cran: pvclust | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0193578

Maternal DNA lineages at the gate of Europe in the 10th century AD
Cited by: 8
Author(s): Ioana Rusu, Alessandra Modi, Stefania Vai, Elena Pilli, Cristina Mircea, Claudia Radu, Claudia Urduzia, Zeno Karl Pinter, Vitalie Bodolică, Cătălin Dobrinescu, Montserrat Hervella, Octavian Popescu, Martina Lari, David Caramelli, Beatrice Kelemen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0051636

Convergent Evolution Associated with Habitat Decouples Phenotype from Phylogeny in a Clade of Lizards
Cited by: 36
Author(s): Shelley Edwards, Bieke Vanhooydonck, Anthony Herrel, John Measey, Krystal A. Tolley
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0186125

A question of data quality—Testing pollination syndromes in Balsaminaceae
Cited by: 18
Author(s): Stefan Abrahamczyk, Sissi Lozada‐Gobilard, Markus Ackermann, Eberhard Fischer, Vera Krieger, Almut Redling, Maximilian Weigend
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0200437

The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei
Cited by: 19
Author(s): Thaís Lima de Brito, Amanda B. Campos, F. A. Bastiaan von Meijenfeldt, Júlio Paulino Daniel, Gabriella B. Ribeiro, Genivaldo G. Z. Silva, Diego Veras Wilke, Deovaldo de Moraes, Bas E. Dutilh, Pedro Milet Meirelles, Amaro E. Trindade-Silva
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-76590-5

Seasonal impact of grazing, viral mortality, resource availability and light on the group-specific growth rates of coastal Mediterranean bacterioplankton
Cited by: 9
Author(s): Olga Sánchez, Isabel Ferrera, Isabel Mabrito, Carlota R. Gazulla, Marta Sebastián, Adrià Auladell, Carolina Marín-Vindas, Clara Cardelús, Isabel Sanz-Sáez, Massimo C. Pernice, Cèlia Marrasé, M. Montserrat Sala, Josep M. Gasol
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0054487

RNA-Seq for Enrichment and Analysis of IRF5 Transcript Expression in SLE
Cited by: 41
Author(s): Rivka C. Stone, Peicheng Du, Di Feng, Kopal Dhawan, Lars Rönnblom, Maija‐Leena Eloranta, Robert Donnelly, Betsy J. Barnes
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0055326

Relative Susceptibility of Vitis vinifera Cultivars to Vector-Borne Xylella fastidiosa through Time
Cited by: 21
Author(s): Arash Rashed, Joyce Kwan, Breanna Baraff, Diane C. Ling, Matthew P. Daugherty, Nabil Killiny, Rodrigo P. P. Almeida
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0194729

Comparison of the oral microbiome in mouthwash and whole saliva samples
Cited by: 30
Author(s): Xiaozhou Fan, Brandilyn A. Peters, Deborah Min, Jiyoung Ahn, Richard B. Hayes
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0190933

Skin transcriptome reveals the dynamic changes in the Wnt pathway during integument morphogenesis of chick embryos
Cited by: 19
Author(s): Husile Gong, Hong Wang, YueXing Wang, Xue Bai, Bin Liu, Jinfeng He, Jianghong Wu, Wang-Mei Qi, Wenguang Zhang
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0025901

Comparison of Gene Expression and Genome-Wide DNA Methylation Profiling between Phenotypically Normal Cloned Pigs and Conventionally Bred Controls
Cited by: 20
Author(s): Fei Gao, Yonglun Luo, Shengting Li, Jian Li, Lin Lin, Anders Lade Nielsen, Charlotte Brandt Sørensen, Gábor Vajta, Jun Wang, Xiuqing Zhang, Yutao Du, Huanming Yang, Lars Bolund
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0023228

Quantitative Expression Profile of Distinct Functional Regions in the Adult Mouse Brain
Cited by: 59
Author(s): Takeya Kasukawa, Koh hei Masumoto, Itoshi Nikaido, Mamoru Nagano, Kenichiro D. Uno, Kaori Tsujino, Carina Hanashima, Yasufumi Shigeyoshi, Hiroki R. Ueda
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0020687

Tissue and Serum microRNAs in the KrasG12D Transgenic Animal Model and in Patients with Pancreatic Cancer
Cited by: 78
Author(s): Joseph J. LaConti, Narayan Shivapurkar, Anju Preet, Anne Deslattes Mays, Ivana Peran, Sung Eun Kim, John L. Marshall, Anna T. Riegel, Anton Wellstein
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0124544

Integrative Genomic Signatures Of Hepatocellular Carcinoma Derived from Nonalcoholic Fatty Liver Disease
Cited by: 55
Author(s): Itziar Frades, Erik Andréasson, José M. Mato, Erik Alexandersson, Rune Matthiesen, María Luz Martínez‐Chantar
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0003911

Human Gene Coexpression Landscape: Confident Network Derived from Tissue Transcriptomic Profiles
Cited by: 211
Author(s): Carlos Prieto, Alberto Risueño, Celia Fontanillo, Javier De Las Rivas
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0234560

First steps towards sustainability? University freshmen perceptions on nature versus environment
Cited by: 9
Author(s): Michaela Maurer, Franz X. Bogner
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-53969-7

Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania
Cited by: 9
Author(s): Robab Katani, Megan A. Schilling, Beatus Lyimo, Triza Tonui, Isabella M. Cattadori, Ernest Eblate, Andimile Martin, Anna B. Estes, Teresia Buza, Dennis Rentsch, Karen W. Davenport, Blake T. Hovde, Samson Lyimo, Lydia Munuo, Francesca Stomeo, Christian Keambou Tiambo, Jessica Radzio‐Basu, Fausta Mosha, Peter J. Hudson, Joram Buza, Vivek Kapur
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.ymben.2016.12.002

Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes
Cited by: 73
Author(s): Joana R. Xavier, Kiran Raosaheb Patil, Isabel Rocha
Software Mentions: 1
Published: almost 8 years ago

10.1074/jbc.M116.749291

Tuning the Transcriptional Response to Hypoxia by Inhibiting Hypoxia-inducible Factor (HIF) Prolyl and Asparaginyl Hydroxylases
Cited by: 82
Author(s): Mun Chiang Chan, Nicholas E. Ilott, Johannes Schödel, David Sims, Anthony Tumber, Kerstin Lippl, David R. Mole, Christopher W. Pugh, Peter J. Ratcliffe, Chris P. Ponting, Christopher J. Schofield
Software Mentions: 1
Published: about 8 years ago

10.1186/s40709-015-0024-5

Paralia (Bacillariophyta) stowaways in ship ballast: implications for biogeography and diversity of the genus
Cited by: 7
Author(s): Michael L. MacGillivary, Irena Kaczmarska
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0057793

Deltex-1 Activates Mitotic Signaling and Proliferation and Increases the Clonogenic and Invasive Potential of U373 and LN18 Glioblastoma Cells and Correlates with Patient Survival
Cited by: 35
Author(s): Roland M. Huber, Michal Rajski, Balasubramanian Sivasankaran, Gerald Moncayo, Brian A. Hemmings, Adrian Merlo
Software Mentions: 1
Published: over 11 years ago

10.1186/s12863-016-0431-0

Characterization of novel SSR markers in diverse sainfoin (Onobrychis viciifolia) germplasm
Cited by: 24
Author(s): Katharina Kempf, Marina Mora-Ortiz, Lydia Smith, Roland Kölliker, Leif Skøt
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0017806

A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome
Cited by: 96
Author(s): Stephan Krueger, Patrick Giavalisco, Leonard Krall, Marie-Caroline Steinhauser, Dirk Büssis, Björn Usadel, Ulf‐Ingo Flügge, Alisdair R. Fernie, Lothar Willmitzer, Dirk Steinhauser
Software Mentions: 1
Published: over 13 years ago

10.1093/jxb/eru330

Vitamin C deficiency improves somatic embryo development through distinct gene regulatory networks in Arabidopsis
Cited by: 18
Author(s): Michael G. Becker, Ainsley Chan, Xingyu Mao, Ian J. Girard, Samantha A. Lee, Mohamed Elhiti, Claudio Stasolla, Mark F. Belmonte
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-14-35

Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies
Cited by: 35
Author(s): Wilson Wen Bin Goh, Mengyuan Fan, Hong Sang Low, Marek Sergot, Limsoon Wong
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12863-015-0198-8

Assessment of the genetic variability amongst mandarin (Citrus reticulata Blanco) accessions in Bhutan using AFLP markers
Cited by: 6
Author(s): Kinley Dorji, C. Yapwattanaphun
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1003834

An In-Depth Comparison of Latent HIV-1 Reactivation in Multiple Cell Model Systems and Resting CD4+ T Cells from Aviremic Patients
Cited by: 351
Author(s): Celsa A. Spina, Jenny L. Anderson, Nancie M. Archin, Alberto Bosque, Jonathan Ch Chan, Marylinda Famiglietti, Warner C. Greene, Angela D. M. Kashuba, Sharon R. Lewin, David M. Margolis, Matthew Mau, Debbie S. Ruelas, Suha Saleh, Kotaro Shirakawa, Robert F. Siliciano, Akul Singhania, Paula C. Soto, Valeri H. Terry, Eric Verdin, Christopher H. Woelk, Stacey Wooden, Sifei Xing, Vicente Planelles
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0214225

Cytogenetics, genomics and biodiversity of the South American and African Arapaimidae fish family (Teleostei, Osteoglossiformes)
Cited by: 21
Author(s): Ezequiel Aguiar de Oliveira, Luiz Antônio Carlos Bertollo, Petr Ráb, Tariq Ezaz, Cássia Fernanda Yano, Terumi Hatanaka, Oladele Ilesanmi Jegede, Alongklod Tanomtong, Thomas Liehr, Alexandr Sember, Sandra Regina Maruyama, Eliana Feldberg, Patrik Ferreira Viana, Marcelo de Bello Cioffi
Software Mentions: 1
Published: over 5 years ago

10.1007/s10549-012-2051-3

Oncogene amplification in male breast cancer: analysis by multiplex ligation-dependent probe amplification
Cited by: 56
Author(s): Robert Kornegoor, Cathy B. Moelans, Anoek H J Verschuur-Maes, Marieke C.H. Hogenes, Peter C. de Bruin, Joost J. Oudejans, Luigi Marchionni, Paul J. van Diest
Software Mentions: 1
Published: over 12 years ago

10.1098/rspb.2021.0940

The evolution of trait correlations constrains phenotypic adaptation to high CO 2 in a eukaryotic alga
Cited by: 15
Author(s): Nathan G. Walworth, Jana Hinners, Phoebe Argyle, Suzana Gonçalves Leles, Martina A. Doblin, Sinéad Collins, Naomi M. Levine
Software Mentions: 1
Published: over 3 years ago

10.3390/nu10091238

A MALDI-TOF MS Approach for Mammalian, Human, and Formula Milks’ Profiling
Cited by: 15
Author(s): Laura Di Francesco, Francesco Girolamo, Maurizio Mennini, Andrea Masotti, Guglielmo Salvatori, Giuliano Rigon, Fabrizio Signore, Emanuela Pietrantoni, Margherita Scapaticci, Isabella Lante, Bianca Maria Goffredo, Oscar Mazzina, Ahmed Ibrahim Elbousify, Paola Roncada, Andrea Dotta, Alessandro Fiocchi, Lorenza Putignani
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0197636

Functional feeding traits as predictors of invasive success of alien freshwater fish species using a food-fish model
Cited by: 19
Author(s): L.A.J. Nagelkerke, Eline van Onselen, Nils Kessel, R.S.E.W. Leuven
Software Mentions: 1
Published: over 6 years ago

10.1098/rsos.190337

Migratory convergence facilitates cultural transmission of humpback whale song
Cited by: 29
Author(s): Clare Owen, Luke Rendell, Rochelle Constantine, Michael J. Noad, Jenny Allen, Olive Andrews, Claire Garrigue, M. Michael Poole, David Donnelly, Nan Hauser, Ellen C. Garland
Software Mentions: 1
Published: about 5 years ago

10.1098/rsos.201084

Migratory insights from singing humpback whales recorded around central New Zealand
Cited by: 11
Author(s): Victoria E. Warren, Rochelle Constantine, Michael J. Noad, Claire Garrigue, Ellen C. Garland
Software Mentions: 1
Published: about 4 years ago

10.1002/reg2.37

Gene expression during the first 28 days of axolotl limb regeneration I: Experimental design and global analysis of gene expression
Cited by: 65
Author(s): S. Randal Voss, Alex Palumbo, Radha Nagarajan, David M. Gardiner, Ken Muneoka, Arnold J. Stromberg, Antony Athippozhy
Software Mentions: 1
Published: over 9 years ago

10.1038/sdata.2018.35

Human pluripotent stem cell derived HLC transcriptome data enables molecular dissection of hepatogenesis
Cited by: 8
Author(s): Wasco Wruck, James Adjaye
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-68165-1

Regional transcriptome analysis of AMPA and GABAA receptor subunit expression generates E/I signatures of the human brain
Cited by: 5
Author(s): Kevin Shen, Tommaso Zeppillo, Agenor Limón
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-15-716

Marked methylation changes in intestinal genes during the perinatal period of preterm neonates
Cited by: 49
Author(s): Fei Gao, Jie Zhang, Pingping Jiang, Desheng Gong, Junwen Wang, Yudong Xia, Morten Østergaard, Jun Wang, Per Torp Sangild
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.32785

A transcription factor collective defines the HSN serotonergic neuron regulatory landscape
Cited by: 44
Author(s): Carla Lloret-Fernández, Miren Maicas, Carlos Mora‐Martinez, Alejandro Artacho, Ángela Jimeno-Martín, Laura Chirivella, Peter J. Weinberg, Nuria Flames
Software Mentions: 1
Published: over 6 years ago

10.1038/srep15118

Delineation of Natural Killer Cell Differentiation from Myeloid Progenitors in Human
Cited by: 21
Author(s): Yi‐Ping Phoebe Chen, Weijian Ye, Wei Jian Tan, Kylie Su Mei Yong, Min Liu, Shaohua Tan, Eva Loh, Kenneth Chang, Thiam Chye Tan, Peter R. Preiser, Jianzhu Chen
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0051113

An Integrated In Silico Approach to Design Specific Inhibitors Targeting Human Poly(A)-Specific Ribonuclease
Cited by: 16
Author(s): Dimitriοs Vlachakis, Athanasia Pavlopoulou, Georgia Tsiliki, Dimitri Komiotis, Constantinos Stathopoulos, Nikolaos A. A. Balatsos, Σοφία Κοσσίδα
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-020-71976-x

Design principles of gene evolution for niche adaptation through changes in protein–protein interaction networks
Cited by: 1
Author(s): Gon Carmi, Somnath Tagore, Alessandro Gorohovski, Aviad Sivan, Dorith Raviv-Shay, Milana Frenkel‐Morgenstern
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2164-15-939

Microsatellite abundance across the Anthozoa and Hydrozoa in the phylum Cnidaria
Cited by: 6
Author(s): Dannise V. Ruiz‐Ramos, Iliana B. Baums
Software Mentions: 1
Published: almost 11 years ago

10.1186/bcr3246

Gene-expression profiling of microdissected breast cancer microvasculature identifies distinct tumor vascular subtypes
Cited by: 27
Author(s): François Pépin, Nicholas Bertos, Julie Laferrière, Svetlana Sadekova, Margarita Souleimanova, Hong Zhao, Greg Finak, Sarkis Meterissian, Michael Hallett, Morag Park
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0010174

A Protein Allergen Microarray Detects Specific IgE to Pollen Surface, Cytoplasmic, and Commercial Allergen Extracts
Cited by: 23
Author(s): Katinka A. Vigh‐Conrad, Donald F. Conrad, Daphne Preuss
Software Mentions: 1
Published: over 14 years ago

10.1038/srep26501

Pattern Genes Suggest Functional Connectivity of Organs
Cited by: 9
Author(s): Yangmei Qin, Jianbo Pan, Mei-Chun Cai, Lixia Yao, Zhi-Liang Ji
Software Mentions: 1
Published: over 8 years ago

10.1155/2018/4343196

Comparative Analysis of the Gut Microbial Composition and Meat Flavor of Two Chicken Breeds in Different Rearing Patterns
Cited by: 21
Author(s): Jing Sun, Yan Wang, Nianzhen Li, Huan Zhong, Hengyong Xu, Qing Zhu, Yiping Liu
Software Mentions: 1
Published: about 6 years ago

10.1038/srep35990

Phylogenetic and functional potential links pH and N2O emissions in pasture soils
Cited by: 61
Author(s): Sainur Samad, Ambarish Biswas, Lars R. Bakken, Tim J. Clough, Cecile A. M. de Klein, Karl G. Richards, Gary Lanigan, Sergio E. Morales
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0134592

Extensive Genomic Diversity among Bovine-Adapted Staphylococcus aureus: Evidence for a Genomic Rearrangement within CC97
Cited by: 33
Author(s): Kathleen E. Budd, Finola McCoy, Stefan Monecke, Paul Cormican, Joan S. Mitchell, Orla M. Keane
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0099785

Identification of Adipokine Clusters Related to Parameters of Fat Mass, Insulin Sensitivity and Inflammation
Cited by: 108
Author(s): Gesine Flehmig, Markus Scholz, Nora Klöting, Mathias Faßhauer, Anke Tönjes, Michael Stümvoll, Byung-Soo Youn, Matthias Blüher
Software Mentions: 1
Published: over 10 years ago

10.1186/s40364-018-0136-9

Kinomic profiling of glioblastoma cells reveals PLCG1 as a target in restricted glucose
Cited by: 11
Author(s): Kiera Walker, Nathaniel H. Boyd, Joshua C. Anderson, Christopher D. Willey, Anita B. Hjelmeland
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0206164

Identification of a piscine reovirus-related pathogen in proliferative darkening syndrome (PDS) infected brown trout (Salmo trutta fario) using a next-generation technology detection pipeline
Cited by: 17
Author(s): Ralph Kuehn, Bernhard C. Stoeckle, Marc Young, L Popp, Jens‐Eike Taeubert, Michael W. Pfaffl, Juergen Geist
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-04511-0

Method for preparing DNA from feces in guanidine thiocyanate solution affects 16S rRNA-based profiling of human microbiota diversity
Cited by: 47
Author(s): Koji Hosomi, Harumi Ohno, Haruka Murakami, Yayoi Natsume-Kitatani, Kumpei Tanisawa, Soichiro Hirata, Haruo Suzuki, Takahiro Nagatake, Tomomi Nishino, Kenji Mizuguchi, Motohiko Miyachi, Jun Kunisawa
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0070067

Candidate Transcriptomic Sources of Inbreeding Depression in Drosophila melanogaster
Cited by: 5
Author(s): Carlos Garcı́a, V. S. de Avila, Humberto Quesada, Armando Caballero
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-9-360

The C1C2: A framework for simultaneous model selection and assessment
Cited by: 13
Author(s): Martin Eklund, Ola Spjuth, Jarl E. S. Wikberg
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0158753

CATALISE: A Multinational and Multidisciplinary Delphi Consensus Study. Identifying Language Impairments in Children
Cited by: 461
Author(s): Dorothy V. M. Bishop, Pamela Snow, Paul A. Thompson, Trisha Greenhalgh
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0071030

Seasonal Phenology and Species Composition of the Aphid Fauna in a Northern Crop Production Area
Cited by: 13
Author(s): Sascha Kirchner, Lea Hiltunen, Thomas Döring, Elina Virtanen, Jukka P. Palohuhta, Jari P. T. Valkonen
Software Mentions: 1
Published: over 11 years ago

10.1093/dnares/dst049

Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species
Cited by: 191
Author(s): Hideki Hirakawa, Kenta Shirasawa, Shunichi Kosugi, Kosuke Tashiro, Shinobu Nakayama, Manabu Yamada, Mistuyo Kohara, Akïharu Watanabe, Yoshie Kishida, Tsunakazu Fujishiro, Hisano Tsuruoka, Chiharu Minami, Shigemi Sasamoto, Midori Kato, Keiko Nanri, Akiko Komaki, Tetsuo Yanagi, Qin Guo-xin, Fumi Maeda, M. Ishikawa, Satoru Kuhara, Shusei Sato, Satoshi Tabata, Sachiko Isobe
Software Mentions: 1
Published: almost 11 years ago

10.1098/rsbl.2014.0709

Trophic convergence drives morphological convergence in marine tetrapods
Cited by: 51
Author(s): Neil P. Kelley, Ryosuke Motani
Software Mentions: 1
Published: almost 10 years ago

10.1155/2018/5068701

The Protein Expression of PDL1 Is Highly Correlated with Those of eIF2α and ATF4 in Lung Cancer
Cited by: 10
Author(s): Liang‐Che Chang, Tzu-Ping Chen, Wei-Ke Kuo, Chung-Ching Hua
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.24800

Genetic rearrangements, hotspot mutations, and microRNA expression in the progression of metastatic adenoid cystic carcinoma of the salivary gland
Cited by: 13
Author(s): Simon Andreasen, Tina Klitmøller Agander, Kristine Bjørndal, Daiva Erentaite, Steffen Heegaard, Stine Rosenkilde Larsen, Linea Cecilie Melchior, Qihua Tan, Benedicte Parm Ulhøi, Irene Wessel, Preben Homøe
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.4781

Pollinator‐mediated interactions between cultivated papaya and co‐flowering plant species
Cited by: 10
Author(s): Raúl Badillo‐Montaño, Armando Aguirre, Miguel A. Munguía‐Rosas
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0023642

Nature's Swiss Army Knives: Ovipositor Structure Mirrors Ecology in a Multitrophic Fig Wasp Community
Cited by: 40
Author(s): Mahua Ghara, Lakshminath Kundanati, Renée M. Borges
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-021-98295-z

Humpback whale song recordings suggest common feeding ground occupation by multiple populations
Cited by: 8
Author(s): Elena Schall, Karolin Thomisch, Olaf Boebel, Gabriele Gerlach, Sari Mangia Woods, I. Roca, Ilse van Opzeeland
Software Mentions: 1
Published: about 3 years ago

10.1186/s12864-015-1512-6

Virulence related sequences; insights provided by comparative genomics of Streptococcus uberis of differing virulence
Cited by: 31
Author(s): Maqsud Hossain, Sharon A. Egan, Tracey J. Coffey, Philip N. Ward, Reginald H. Wilson, James A. Leigh, Richard D. Emes
Software Mentions: 1
Published: over 9 years ago

10.1002/ece3.2263

Invading a mutualistic network: to be or not to be similar
Cited by: 18
Author(s): Henintsoa Onivola Minoarivelo, Cang Hui
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0061534

Multi-Country Evaluation of Affective Experience: Validation of an Abbreviated Version of the Day Reconstruction Method in Seven Countries
Cited by: 29
Author(s): José Luís Ayuso-Mateos, Marta Miret, Francisco Félix Caballero, Beatriz Olaya, Josep María Haro, Paul Kowal, Somnath Chatterji
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0146740

DNA Copy Number Aberrations, and Human Papillomavirus Status in Penile Carcinoma. Clinico-Pathological Correlations and Potential Driver Genes
Cited by: 19
Author(s): Susannah La-Touche, Christophe Lemetre, Maryou B. Lambros, Elżbieta Stankiewicz, Charlotte K.Y. Ng, Britta Weigelt, Ramzi Rajab, Brendan Tinwell, Cathy Corbishley, Nick Watkin, Daniel M. Berney, Jorge S. Reis‐Filho
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms150813697

A Sensitive and Effective Proteomic Approach to Identify She-Donkey’s and Goat’s Milk Adulterations by MALDI-TOF MS Fingerprinting
Cited by: 28
Author(s): Francesco Girolamo, Andrea Masotti, Guglielmo Salvatori, Margherita Scapaticci, Maurizio Muraca, Lorenza Putignani
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-11-493

Identification of response-modulated genetic interactions by sensitivity-based epistatic analysis
Cited by: 5
Author(s): Cory Batenchuk, Lioudmila Tepliakova, Mads Kærn
Software Mentions: 1
Published: about 14 years ago

10.1007/s00394-018-1736-8

Gene expression changes by high-polyphenols cocoa powder intake: a randomized crossover clinical study
Cited by: 15
Author(s): Paloma K Barrera-Reyes, N. Hernández-Ramírez, Jorge Alberto Cortés, Laure Poquet, Karine Redeuil, Claudia Rangel‐Escareño, Martin Kussmann, Irma Silva‐Zolezzi, M. Elizabeth Tejero
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0200632

Geospatial distribution of Mycobacterium tuberculosis genotypes in Africa
Cited by: 46
Author(s): Violet Chihota, Antoinette Niehaus, Elizabeth M. Streicher, Xia Wang, Samantha L. Sampson, Peter R. Mason, Gunilla Källenius, Sayoki Mfinanga, Marnomorney Pillay, Marisa Klopper, Webster Kasongo, Marcel A. Behr, Nicolaas C. Gey van Pittius, Paul D. van Helden, David Couvin, Nalin Rastogi, Robin M. Warren
Software Mentions: 1
Published: over 6 years ago

10.1002/1873-3468.13311

Time‐resolved interaction proteomics of the<scp>GIGANTEA</scp>protein under diurnal cycles inArabidopsis
Cited by: 33
Author(s): Johanna Krahmer, Greg S. Goralogia, Atsuhito Kubota, Argyris Zardilis, Richard S. Johnson, Young Hun Song, Michael J. MacCoss, Thierry Le Bihan, Karen Halliday, Takato Imaizumi, Andrew J. Millar
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0048699

Self-Renewal and Pluripotency Acquired through Somatic Reprogramming to Human Cancer Stem Cells
Cited by: 30
Author(s): Shogo Nagata, Kunio Hirano, Michele Kanemori, Liang-Tso Sun, Takashi Tada
Software Mentions: 1
Published: about 12 years ago

10.1016/j.fawpar.2019.e00045

Genetic diversity of Echinococcus multilocularis in red foxes from two Scandinavian countries: Denmark and Sweden
Cited by: 10
Author(s): Jenny Knapp, Gérald Umhang, Helene Wahlström, Mohammad Nafi Solaiman Al‐Sabi, Erik Ågren, Heidi L. Enemark
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-13931-x

Comparative sphingolipidomics of disease-causing trypanosomatids reveal unique lifecycle- and taxonomy-specific lipid chemistries
Cited by: 13
Author(s): Xue Li Guan, Pascal Mäser
Software Mentions: 1
Published: about 7 years ago

10.3389/fcimb.2020.571147

Robust, Comprehensive Molecular, and Phenotypical Characterisation of Atypical Candida albicans Clinical Isolates From Bogotá, Colombia
Cited by: 0
Author(s): Giovanni Rodríguez-Leguizamón, Andrés Ceballos-Garzón, Carlos F. Suárez, Manuel A. Patarroyo, Claudia Marcela Parra-Giraldo
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2019.00231

Transcriptomic Analysis of Seed Germination Under Salt Stress in Two Desert Sister Species (Populus euphratica and P. pruinosa)
Cited by: 30
Author(s): Caihua Zhang, Wei Luo, Yanda Li, Xu Zhang, Xiaotao Bai, Zhimin Niu, Xiao Zhang, Zhijun Li, Dongshi Wan
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2017.00098

Assessment of Genetic Diversity and Structure of Large Garlic (Allium sativum) Germplasm Bank, by Diversity Arrays Technology “Genotyping-by-Sequencing” Platform (DArTseq)
Cited by: 55
Author(s): Leticia A. Egea, Rosa Mérida-García, Andrzej Kilian, Pilar Hernández, Gabriel Dorado
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2016.00144

Detection of Significant Groups in Hierarchical Clustering by Resampling
Cited by: 16
Author(s): Paola Sebastiani, Thomas T. Perls
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2013.00133

MicroRNA discovery by similarity search to a database of RNA-seq profiles
Cited by: 8
Author(s): Sachin Pundhir, Jan Gorodkin
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0009116

Individual Variation in Pheromone Response Correlates with Reproductive Traits and Brain Gene Expression in Worker Honey Bees
Cited by: 53
Author(s): Sarah D. Kocher, Julien F. Ayroles, Eric A. Stone, Christina M. Grozinger
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0098738

Additional Nitrogen Fertilization at Heading Time of Rice Down-Regulates Cellulose Synthesis in Seed Endosperm
Cited by: 22
Author(s): Keiko Midorikawa, Masaharu Kuroda, Kaede Terauchi, Masako Hoshi, Sachiko Ikenaga, Yoshiro Ishimaru, Keiko Abe, Tomiko Asakura
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0011426

Quantifying Phenotypic Variation in Isogenic Caenorhabditis elegans Expressing Phsp-16.2::gfp by Clustering 2D Expression Patterns
Cited by: 15
Author(s): Alexander K. Seewald, James R. Cypser, Alexander Mendenhall, Thomas E. Johnson
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0211962

How to integrate wet lab and bioinformatics procedures for wine DNA admixture analysis and compositional profiling: Case studies and perspectives
Cited by: 9
Author(s): Rita Vignani, Píetro Lió, Monica Scali
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pntd.0003978

Transcription Profiling of Malaria-Naïve and Semi-immune Colombian Volunteers in a Plasmodium vivax Sporozoite Challenge
Cited by: 31
Author(s): Mónica L. Rojas-Peña, Andrés Vallejo, Greg Gibson, Myriam Arévalo‐Herrera
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pntd.0001779

The MASP Family of Trypanosoma cruzi: Changes in Gene Expression and Antigenic Profile during the Acute Phase of Experimental Infection
Cited by: 53
Author(s): Sara Lopes dos Santos, Leandro Martins de Freitas, Francisco Pereira Lobo, Gabriela F. Rodrigues-Luiz, Tiago Antônio de Oliveira Mendes, Anny Carolline Silva Oliveira, Luciana O. Andrade, Égler Chiari, Ricardo T. Gazzinelli, Santuza Maria Ribeiro Teixeira, Ricardo Toshio Fujiwara, Daniella Castanheira Bartholomeu
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms160920896

A Simple and Effective Mass Spectrometric Approach to Identify the Adulteration of the Mediterranean Diet Component Extra-Virgin Olive Oil with Corn Oil
Cited by: 21
Author(s): Francesco Girolamo, Andrea Masotti, Isabella Lante, Margherita Scapaticci, Cosima Damiana Calvano, Carlo Zambonin, Maurizio Muraca, Lorenza Putignani
Software Mentions: 1
Published: about 9 years ago

10.3390/toxins11050288

Microcystis Chemotype Diversity in the Alimentary Tract of Bigheaded Carp
Cited by: 8
Author(s): Milán Riba, Attila Kiss‐Szikszai, Sándor Gonda, Gergely Boros, Zoltán Vitál, Andrea K. Borsodi, Gergely Krett, Gábor Borics, Andrea Zsuzsanna Ujvárosi, Gábor Vasas
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0040398

The Effect of Dietary Adaption on Cranial Morphological Integration in Capuchins (Order Primates, Genus Cebus)
Cited by: 85
Author(s): Jana Makedonska, Barth W. Wright, David S. Strait
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2020.01583

In-Depth Bioinformatic Analyses of Nidovirales Including Human SARS-CoV-2, SARS-CoV, MERS-CoV Viruses Suggest Important Roles of Non-canonical Nucleic Acid Structures in Their Lifecycles
Cited by: 54
Author(s): Martin Bartas, Václav Brázda, Natália Bohálová, Alessio Cantara, Adriana Volná, Tereza Stachurová, Kateřina Malachová, Eva Brázdová Jagelská, Otília Porubiaková, Jiří Červeň, Petr Pečínka
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-13-510

Is the C-terminal insertional signal in Gram-negative bacterial outer membrane proteins species-specific or not?
Cited by: 41
Author(s): Nagarajan Paramasivam, Michael Habeck, Dirk Linke
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0053372

Genome-Wide Analysis Reveals the Unique Stem Cell Identity of Human Amniocytes
Cited by: 49
Author(s): Colin T. Maguire, Bradley L. Demarest, John E. Hill, James D. Palmer, Arthur R. Brothman, H. Joseph Yost, Maureen L. Condic
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pcbi.1002060

Differential Producibility Analysis (DPA) of Transcriptomic Data with Metabolic Networks: Deconstructing the Metabolic Response of M. tuberculosis
Cited by: 20
Author(s): Bhushan Bonde, Dany J. V. Beste, Emma Laing, Andrzej M. Kierzek, Johnjoe McFadden
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2018.01223

Viral Communities of Shark Bay Modern Stromatolites
Cited by: 23
Author(s): Richard Allen White, Hon Lun Wong, Rendy Ruvindy, Brett A. Neilan, Brendan P. Burns
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.566415

Core and Accessory Genome Comparison of Australian and International Strains of O157 Shiga Toxin-Producing Escherichia coli
Cited by: 3
Author(s): Alexander Pintara, Amy V. Jennison, Irani Rathnayake, Glen E. Mellor, Flavia Huygens
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pcbi.1004405

Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers
Cited by: 110
Author(s): Shaun S. Sanders, Dale D.O. Martin, Stefanie Butland, Mathieu Lavallée‐Adam, Diego Calzolari, Chris Kay, John R. Yates, Michael R. Hayden
Software Mentions: 1
Published: over 9 years ago

Projects: cran: pvclust

Papers Mentioning pvclust 442