Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pvclust

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pvclust

Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
11 versions
Latest release: about 5 years ago
12 dependent packages
3,406 downloads last month

Papers Mentioning pvclust 442

10.7717/peerj.11206
Influence of hunting strategy on foraging efficiency in Galapagos sea lions
Cited by: 6
Author(s): Jessica-Anne Blakeway, John P. Y. Arnould, Andrew J. Hoskins, Patricia Martin-Cabrera, Grace J. Sutton, Luis A. Hückstädt, Daniel P. Costa, Diego Páez‐Rosas, Stella Villegas‐Amtmann
Software Mentions: 4
Published: over 3 years ago
10.1186/s12862-017-0902-6
Transcriptomic insights into the genetic basis of mammalian limb diversity
Cited by: 19
Author(s): Jennifer Maier, Marcelo Rivas‐Astroza, Jenny Deng, Anna Dowling, Paige Oboikovitz, Xiaoyi Cao, Richard R. Behringer, Chris J. Cretekos, John J. Rasweiler, Sheng Zhong, Karen E. Sears
Software Mentions: 4
Published: over 7 years ago
10.3389/fmicb.2019.00979
Wood Decay Characteristics and Interspecific Interactions Control Bacterial Community Succession in Populus grandidentata (Bigtooth Aspen)
Cited by: 6
Author(s): Eiko E. Kuramae, Márcio Fernandes Alves Leite, Afnan Khalil Ahmad Suleiman, Christopher M. Gough, Buck T. Castillo, Lewis Faller, Rima B. Franklin, John Syring
Software Mentions: 4
Published: over 5 years ago
10.3389/fphys.2018.00019
Comparison of Fatty Acid and Gene Profiles in Skeletal Muscle in Normal and Obese C57BL/6J Mice before and after Blunt Muscle Injury
Cited by: 6
Author(s): Jens-Uwe Werner, Klaus Tödter, Pengfei Xu, Lydia Lockhart, Markus Jähnert, Pascal Gottmann, Annette Schürmann, Ludger Scheja, Martin Wabitsch, Uwe Knippschild
Software Mentions: 4
Published: almost 7 years ago
10.1080/21505594.2017.1342910
<i>Pseudogymnoascus destructans</i> transcriptome changes during white-nose syndrome infections
Cited by: 22
Author(s): Sophia Reeder, Jonathan M. Palmer, Jenni M. Prokkola, Thomas M. Lilley, DeeAnn M. Reeder, Kenneth A. Field
Software Mentions: 4
Published: over 7 years ago
10.3389/fmicb.2015.01531
Metagenomic Analysis Suggests Modern Freshwater Microbialites Harbor a Distinct Core Microbial Community
Cited by: 43
Author(s): Richard Allen White, Amy M. Chan, Gregory S. Gavelis, Brian S. Leander, A. L. Brady, G. F. Slater, D. S. S. Lim, Curtis A. Suttle
Software Mentions: 4
Published: almost 9 years ago
10.3389/fmicb.2019.01432
Innate Immune Genes Associated With Newcastle Disease Virus Load in Chick Embryos From Inbred and Outbred Lines
Cited by: 9
Author(s): Megan A. Schilling, Sahar Memari, Isabella M. Cattadori, Robab Katani, Amandus P. Muhairwa, Joram Buza, Peter J. Hudson
Software Mentions: 4
Published: over 5 years ago
10.1186/s12866-020-02026-9
A longitudinal study on morpho-genetic diversity of pathogenic Rhizoctonia solani from sugar beet and dry beans of western Nebraska
Cited by: 4
Author(s): Saurav Das, T. Plyler-Harveson, Dipak K. Santra, Bijesh Maharjan, Kathy A. Nielson, Robert M. Harveson
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-017-19004-3
Gene and MicroRNA Perturbations of Cellular Response to Pemetrexed Implicate Biological Networks and Enable Imputation of Response in Lung Adenocarcinoma
Cited by: 12
Author(s): Eric R. Gamazon, Matthew R. Trendowski, Yujia Wen, Claudia Wing, Shannon M. Delaney, Won Jae Huh, Shan S. Wong, Nancy J. Cox, Eileen Dolan
Software Mentions: 4
Published: almost 7 years ago
10.1371/journal.pone.0179901
Microarray analyses of otospheres derived from the cochlea in the inner ear identify putative transcription factors that regulate the characteristics of otospheres
Cited by: 2
Author(s): Takehiro Iki, Michihiro Tanaka, Shin‐ichiro Kitajiri, Tomoko Kita, Yoshihisa Kawasaki, Akifumi Mizukoshi, Wataru Fujibuchi, Takayuki Nakagawa, Tatsutoshi Nakahata, Juichi Ito, Koichi Omori, Megumu K. Saito
Software Mentions: 4
Published: over 7 years ago
10.1038/srep23050
Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies
Cited by: 39
Author(s): Yuvraj Indoliya, Poonam Tiwari, Abhisekh Singh Chauhan, Ridhi Goel, Manju Shri, Sumit K. Bag, Debasis Chakrabarty
Software Mentions: 4
Published: over 8 years ago
10.1038/srep33446
Maternal Genetic Ancestry and Legacy of 10th Century AD Hungarians
Cited by: 28
Author(s): Aranka Csősz, Anna Szécsényi-Nagy, Veronika Csákyová, Péter Langó, Viktória Bódis, Kitti Köhler, Gyöngyvér Tömöry, Milan Nagy, Balázs Gusztáv Mende
Software Mentions: 4
Published: about 8 years ago
10.1371/journal.ppat.1005168
The White-Nose Syndrome Transcriptome: Activation of Anti-fungal Host Responses in Wing Tissue of Hibernating Little Brown Myotis
Cited by: 90
Author(s): Kenneth A. Field, Joseph S. Johnson, Thomas M. Lilley, Sophia Reeder, Elizabeth J. Rogers, Melissa Behr, DeeAnn M. Reeder
Software Mentions: 4
Published: about 9 years ago
10.1098/rspb.2020.2244
Koala methylomes reveal divergent and conserved DNA methylation signatures of X chromosome regulation
Cited by: 3
Author(s): Devika Singh, Dan Sun, Andrew King, David E. Alquezar‐Planas, Rebecca N. Johnson, David Alvarez‐Ponce, Soojin V. Yi
Software Mentions: 4
Published: over 3 years ago
10.1186/s12864-015-1491-7
Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum
Cited by: 53
Author(s): Rafael D. Rosengarten, Balaji Santhanam, Danny Fuller, Mariko Katoh-Kurasawa, William F. Loomis, Blaž Zupan, Gad Shaulsky
Software Mentions: 4
Published: over 9 years ago
10.1186/s12920-018-0378-2
Identification of differential gene expression profile from peripheral blood cells of military pilots with hypertension by RNA sequencing analysis
Cited by: 10
Author(s): Xiaohu Zhao, Shaohua Yang, Yi-Shang Yan, Xin Zhang, Lin Zhang, Bo Jiao, Shuai Jiang, Zhi‐Bin Yu
Software Mentions: 4
Published: over 6 years ago
10.1002/ece3.3625
Cryptic genetic variation in an inbreeding and cosmopolitan pest, <i>Xylosandrus crassiusculus</i> , revealed using dd <scp>RAD</scp> seq
Cited by: 29
Author(s): Caroline Storer, Adam C. Payton, Stuart F. McDaniel, Bjarte H. Jordal, Jiří Hulcr
Software Mentions: 4
Published: about 7 years ago
10.1016/j.molmet.2019.03.001
Discovering metabolic disease gene interactions by correlated effects on cellular morphology
Cited by: 12
Author(s): Yang Jiao, Umer Ahmed, M.F. Michelle Sim, Andrea Bejar, Xiaolan Zhang, Mesbah Talukder, Robert H. Rice, Jason Flannick, Anna I. Podgornaia, Dermot F. Reilly, Jesse M. Engreitz, Maria Kost‐Alimova, Kate Hartland, Josep M. Mercader, Sara A. Georges, Vilas Wagh, Marija Tadin‐Strapps, John G. Doench, J. Michael Edwardson, Justin J. Rochford, Evan D. Rosen, Amit R. Majithia
Software Mentions: 4
Published: over 5 years ago
10.15252/msb.20145141
Intercellular network structure and regulatory motifs in the human hematopoietic system
Cited by: 56
Author(s): Wenlian Qiao, Weijia Wang, Elisa Laurenti, Andrei L. Turinsky, Shoshana J. Wodak, Gary D. Bader, John E. Dick, Peter W. Zandstra
Software Mentions: 4
Published: over 10 years ago
10.1128/JB.00272-19
Isolates from Colonic Spirochetosis in Humans Show High Genomic Divergence and Potential Pathogenic Features but Are Not Detected Using Standard Primers for the Human Microbiota
Cited by: 10
Author(s): Kaisa Thorell, Linn Inganäs, Annette Backhans, Lars Agréus, Åke Öst, Marjorie M. Walker, Nicholas J. Talley, Lars Kjellström, Anna Andréasson, Lars Engstrand
Software Mentions: 4
Published: about 5 years ago
10.1038/s41438-021-00502-5
Strawberry sweetness and consumer preference are enhanced by specific volatile compounds
Cited by: 41
Author(s): Zhen Fan, Tomas Hasing, Timothy S. Johnson, Drake M. Garner, Michael L. Schwieterman, Christopher R. Barbey, Thomas A. Colquhoun, Charles A. Sims, M. D. V. de Resende, Vance M. Whitaker
Software Mentions: 4
Published: over 3 years ago
10.1186/gm551
Early aberrant DNA methylation events in a mouse model of acute myeloid leukemia
Cited by: 28
Author(s): Miriam Sonnet, Rainer Claus, Natália Becker, Manuela Zucknick, Jana Petersen, Daniel B. Lipka, Christopher C. Oakes, Mindaugas Andrulis, Amelie Lier, Michael D. Milsom, Tania Witte, Lei Gu, Soo Zin Kim-Wanner, Peter Schirmacher, Michael Wulfert, Norbert Gattermann, Michael Lübbert, Frank Rosenbauer, Michael Rehli, Lars Bullinger, Dieter Weichenhan, Christoph Plass
Software Mentions: 4
Published: almost 11 years ago
10.3390/microorganisms8060842
Transcriptome Profiling of Toxoplasma gondii-Infected Human Cerebromicrovascular Endothelial Cell Response to Treatment with Monensin
Cited by: 5
Author(s): Mohammad Syamsul Reza Harun, Mica Taylor, Xing‐Quan Zhu, Hany M. Elsheikha
Software Mentions: 4
Published: over 4 years ago
10.1186/1471-2105-15-76
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
Cited by: 185
Author(s): Simon Roux, Jérémy Tournayre, Antoine Mahul, Didier Debroas, François Enault
Software Mentions: 4
Published: over 10 years ago
10.1186/s12864-019-5667-4
Postovulatory maternal transcriptome in Atlantic salmon and its relation to developmental potential of embryos
Cited by: 8
Author(s): Teshome Tilahun Bizuayehu, Maren Mommens, Arvind Sundaram, Anusha K. S. Dhanasiri, Igor Babiak
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2015.00966
Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential
Cited by: 39
Author(s): Richard Allen White, Ian M. Power, Gregory M. Dipple, Gordon Southam, Curtis A. Suttle
Software Mentions: 4
Published: about 9 years ago
10.1136/openhrt-2018-000915
Lamin mutation location predicts cardiac phenotype severity: combined analysis of the published literature
Cited by: 14
Author(s): Gabriella Captur, Eloisa Arbustini, Petros Syrris, Dina Radenković, Benjamin O’Brien, William J. McKenna, James Moon
Software Mentions: 4
Published: about 6 years ago
10.1186/s40462-015-0060-7
Shadowed by scale: subtle behavioral niche partitioning in two sympatric, tropical breeding albatross species
Cited by: 33
Author(s): Melinda G. Conners, Elliott L. Hazen, Daniel P. Costa, Scott A. Shaffer
Software Mentions: 4
Published: about 9 years ago
10.1186/s12915-017-0352-z
The landscape of sex-differential transcriptome and its consequent selection in human adults
Cited by: 180
Author(s): Moran Gershoni, Shmuel Pietrokovski
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12864-016-3286-x
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
Cited by: 91
Author(s): Ann C. Gregory, Sergei A. Solonenko, J. Cesar Ignacio‐Espinoza, Kurt LaButti, Alex Copeland, Sebastian Sudek, Ashley Maitland, Lauren Chittick, Filipa Santos, Joshua S. Weitz, Alexandra Z. Worden, Tanja Woyke, Matthew B. Sullivan
Software Mentions: 4
Published: about 8 years ago
10.1371/journal.pone.0242940
Development of a minimal KASP marker panel for distinguishing genotypes in apple collections
Cited by: 7
Author(s): Mark Winfield, Amanda Burridge, Matthew Ordidge, Helen Harper, Paul Wilkinson, Daniel Thorogood, Liz Copas, Keith J. Edwards, Gary Barker
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13059-017-1353-5
Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines
Cited by: 165
Author(s): Rajarshi Ghosh, Ninad Oak, Sharon E. Plon
Software Mentions: 4
Published: almost 7 years ago
10.1186/s12864-018-5146-3
Cell-type specific RNA-Seq reveals novel roles and regulatory programs for terminally differentiated Dictyostelium cells
Cited by: 18
Author(s): Koryu Kin, Gillian Forbes, Andrew Cassidy, Pauline Schaap
Software Mentions: 4
Published: about 6 years ago
10.1128/mSystems.00200-18
Antimicrobial Chemicals Associate with Microbial Function and Antibiotic Resistance Indoors
Cited by: 59
Author(s): Ashkaan K. Fahimipour, Sarah Ben Maamar, Alexander McFarland, Ryan A. Blaustein, Jing Chen, A. Glawe, Jeff Kline, Jessica L. Green, Rolf U. Halden, Kevin Van Den Wymelenberg, Curtis Huttenhower, Erica M. Hartmann
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0023628
Rhythmic Diel Pattern of Gene Expression in Juvenile Maize Leaf
Cited by: 12
Author(s): Maciej Jończyk, Alicja Sobkowiak, Paweł Siedlecki, Przemysław Biecek, Joanna Trzcińska-Danielewicz, Jerzy Tiuryn, Jan Fronk, Paweł Sowiński
Software Mentions: 4
Published: over 13 years ago
10.1371/journal.pone.0244038
Rapid nucleus-scale reorganization of chromatin in neurons enables transcriptional adaptation for memory consolidation
Cited by: 9
Author(s): Manuel Peter, Dominik F. Aschauer, Renata Rose, Anne Sinning, Florian Grössl, Dominic Kargl, Klaus Kraitsy, Thomas R Burkard, Heiko J. Luhmann, Wulf Haubensak, Simon Rumpel
Software Mentions: 4
Published: over 3 years ago
10.1128/mBio.00586-21
Intraspecies Transcriptional Profiling Reveals Key Regulators of Candida albicans Pathogenic Traits
Cited by: 13
Author(s): Joshua M. Wang, Andrew L. Woodruff, Matthew J. Dunn, Robert J. Fillinger, Richard J. Bennett, Matthew Anderson
Software Mentions: 4
Published: over 3 years ago
10.3390/ijms20194665
Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee
Cited by: 15
Author(s): Rayan Awada, Claudine Campa, Estelle Gibault, Eveline Déchamp, Frédéric Georget, Maud Lepelley, Cécile Abdallah, Alexender Erban, Federico Martinez‐Seidel, Joachim Kopka, Laurent Legendre, Sophie Léran, Geneviève Conéjéro, Jean‐Luc Verdeil, Dominique Crouzillat, D. Breton, Benoît Bertrand, Hervé Etienne
Software Mentions: 4
Published: about 5 years ago
10.3389/fpls.2016.00524
Comparative Analysis of Membrane Lipids in Psychrophilic and Mesophilic Freshwater Dinoflagellates
Cited by: 20
Author(s): Andrea Anesi, Ulrike Obertegger, Gert H. Hansen, Assaf Sukenik, Giovanna Flaim, Graziano Guella
Software Mentions: 4
Published: over 8 years ago
10.1371/journal.pone.0094284
Differences in Forage-Acquisition and Fungal Enzyme Activity Contribute to Niche Segregation in Panamanian Leaf-Cutting Ants
Cited by: 21
Author(s): Pepijn W. Kooij, Joanito Liberti, Konstantinos Giampoudakis, Morten Schiøtt, Jacobus J. Boomsma
Software Mentions: 4
Published: over 10 years ago
10.26508/lsa.201800098
An integrative machine learning approach for prediction of toxicity-related drug safety
Cited by: 38
Author(s): Artem Lysenko, Alok Sharma, Keith A. Boroevich, Tatsuhiko Tsunoda
Software Mentions: 4
Published: almost 6 years ago
10.1534/g3.117.044099
Phenotypic Diagnosis of Lineage and Differentiation During Sake Yeast Breeding
Cited by: 20
Author(s): Shinsuke Ohnuki, Hiroki Okada, Anne Friedrich, Yoichiro Kanno, Tetsuya Goshima, Hirokazu Hasuda, Masaaki Inahashi, Naoto Okazaki, Hiroyasu Tamura, R. Nakamura, Dai Hirata, Hisashi Fukuda, Hitoshi Shimoi, Katsuhiko Kitamoto, Dai Watanabe, Joseph Schacherer, Takeshi Akao, Yoshikazu Ohya
Software Mentions: 4
Published: over 7 years ago
10.1186/1471-2164-13-619
Molecular characterisation of cell line models for triple-negative breast cancers
Cited by: 63
Author(s): Anita Grigoriadis, Alan Mackay, Elodie Noël, Pei Jun Wu, Rachael Natrajan, Jessica Frankum, Jorge S. Reis‐Filho, Andrew Tutt
Software Mentions: 4
Published: almost 13 years ago
10.1371/journal.pone.0135731
A Dissolved Oxygen Threshold for Shifts in Bacterial Community Structure in a Seasonally Hypoxic Estuary
Cited by: 71
Author(s): Rachel L. Spietz, Cheryl M. Williams, Gabrielle Rocap, M. Claire Horner-Devine
Software Mentions: 4
Published: over 9 years ago
10.3390/cancers12051143
Differential B-Cell Receptor Signaling Requirement for Adhesion of Mantle Cell Lymphoma Cells to Stromal Cells
Cited by: 8
Author(s): Laia Sadeghi, Gustav Arvidsson, Magali Merrien, Agata M. Wasik, André Görgens, C. I. Edvard Smith, Birgitta Sander, Anthony P. H. Wright
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-017-07975-2
Signs of innate immune activation and premature immunosenescence in psoriasis patients
Cited by: 30
Author(s): Liisi Šahmatova, Elena Sügis, Marina Šunina, Helen Hermann, Ele Prans, Maire Pihlap, Kristi Abram, Ana Rebane, Hedi Peterson, Pärt Peterson, Külli Kingo, Kai Kisand
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pcbi.1006453
Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression
Cited by: 81
Author(s): Matthew L. Bendall, Miguel de Mulder, Luis P. Íñiguez, Aarón Lecanda, Marcos Pérez‐Losada, Mario Ostrowski, R. Brad Jones, Lubbertus C. F. Mulder, Gustavo Reyes‐Terán, Keith A. Crandall, Christopher E. Ormsby, Douglas F. Nixon
Software Mentions: 4
Published: about 5 years ago
10.3389/fphys.2018.00674
Diet-Induced Obesity Affects Muscle Regeneration After Murine Blunt Muscle Trauma—A Broad Spectrum Analysis
Cited by: 19
Author(s): Pengfei Xu, Jens-Uwe Werner, Sebastian Milerski, Carmen M. Hamp, Tatjana Kuzenko, Markus Jähnert, Pascal Gottmann, Luisa de Roy, Daniela Warnecke, Alireza Abaei, Annette Palmer, Markus Huber‐Lang, Lutz Dürselen, Volker Rasche, Annette Schürmann, Martin Wabitsch, Uwe Knippschild
Software Mentions: 4
Published: over 6 years ago
10.3390/ijms22041811
Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions in Mitochondrial Genomes
Cited by: 15
Author(s): Liina Kinkar, Robin B. Gasser, Bonnie L. Webster, David Rollinson, D. Timothy J. Littlewood, Bill C.H. Chang, Andreas J. Stroehlein, Pasi K. Korhonen, Neil D. Young
Software Mentions: 4
Published: almost 4 years ago
10.1038/s42003-021-01651-y
Kaiso (ZBTB33) subcellular partitioning functionally links LC3A/B, the tumor microenvironment, and breast cancer survival
Cited by: 9
Author(s): Sandeep K. Singhal, Jung S. Byun, Samson Park, Tingfen Yan, Ryan Yancey, Ambar Caban, Sara Gil Hernandez, Stephen M. Hewitt, Heike Boisvert, Stephanie Hennek, Mark Bobrow, Shakir Ahmed, Jason White, Clayton Yates, Andrew Aukerman, R. Vanguri, Rohan Bareja, Romina Lenci, Paula Lucía Farré, Adriana De Siervi, Anna María Nápoles, Nasreen A. Vohra, Kevin Gardner
Software Mentions: 4
Published: almost 4 years ago
10.3389/fmicb.2014.00487
Aerobic methanotrophic communities at the Red Sea brine-seawater interface
Cited by: 28
Author(s): Rehab Z. Abdallah, Mustafa Adel, Amged Ouf, Ahmed A. Sayed, Mohamed A. Ghazy, Intikhab Álam, Magbubah Essack, Feras F. Lafi, Vladimir B. Bajic, Hamza A. El-Dorry, Rania Siam
Software Mentions: 3
Published: about 10 years ago
10.1038/s41598-019-43183-w
Goth migration induced changes in the matrilineal genetic structure of the central-east European population
Cited by: 15
Author(s): Ireneusz Stolarek, Luiza Handschuh, Anna Juras, Wioletta Nowaczewska, Hanna Kóčka-Krenz, Andrzej Michałowski, Janusz Piontek, Piotr Kozlowski, Marek Figlerowicz
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-019-49452-y
Defining Dysbiosis for a Cluster of Chronic Diseases
Cited by: 182
Author(s): Lamont Wilkins, Manoj Monga, Aaron W. Miller
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pbio.1001637
Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome
Cited by: 238
Author(s): Nathan P. McNulty, Meng Wu, Alison R. Erickson, Chongle Pan, Brian K. Erickson, Eric C. Martens, Nicholas A. Pudlo, Brian D. Muegge, Bernard Henrissat, Robert L. Hettich, Jeffrey I. Gordon
Software Mentions: 3
Published: over 11 years ago
10.1038/s41598-019-38744-y
Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover
Cited by: 27
Author(s): Lorrie Maccario, Shelly D. Carpenter, Jody W. Deming, Timothy M. Vogel, Catherine Larose
Software Mentions: 3
Published: almost 6 years ago
10.3389/fonc.2020.00747
LAPTM5–CD40 Crosstalk in Glioblastoma Invasion and Temozolomide Resistance
Cited by: 13
Author(s): Anne Berberich, Frank Bartels, Zheng Tang, Maximilian Knoll, S Pusch, Nanina Hucke, Tobias Keßler, Zhong Dong, Benedikt Wiestler, Frank Winkler, Michael Platten, Wolfgang Wick, Amir Abdollahi, Dieter Lemke
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-019-51073-4
Global airborne microbial communities controlled by surrounding landscapes and wind conditions
Cited by: 50
Author(s): Romie Tignat-Perrier, Aurélien Dommergue, Alban Thollot, Christoph Keuschnig, Olivier Magand, Timothy M. Vogel, Catherine Larose
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2017.02501
Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
Cited by: 88
Author(s): María del Carmen Montero-Calasanz, Jan P. Meier‐Kolthoff, Dao‐Feng Zhang, Adnan Yaramis, Manfred Rohde, Tanja Woyke, Nikos C. Kyrpides, Peter Schümann, Wenjun Li, Markus Göker
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-019-53973-x
Identification of Sero-Diagnostic Antigens for the Early Diagnosis of Johne’s Disease using MAP Protein Microarrays
Cited by: 6
Author(s): Lingling Li, John P. Bannantine, Joseph J. Campo, Arlo Randall, Yrjo T. Gröhn, Megan A. Schilling, Robab Katani, Jessica Radzio‐Basu, Laurel A. Easterling, Vivek Kapur
Software Mentions: 3
Published: almost 5 years ago
10.1186/1756-0500-5-617
Lung Cancer Signature Biomarkers: tissue specific semantic similarity based clustering of Digital Differential Display (DDD) data
Cited by: 33
Author(s): Mousami Srivastava, Pankaj Khurana, R. Sugadev
Software Mentions: 3
Published: about 12 years ago
10.7717/peerj.382
Characterisation of the horse transcriptome from immunologically active tissues
Cited by: 6
Author(s): Joanna Moreton, Sunir Malla, A. Aziz Aboobaker, Rachael Tarlinton, Richard D. Emes
Software Mentions: 3
Published: over 10 years ago
10.3389/fmicb.2014.00335
Structural and functional changes in the gut microbiota associated to Clostridium difficile infection
Cited by: 64
Author(s): Ana Elena Pérez‐Cobas, Alejandro Artacho, Stephan Ott, Andrés Moya, María José Gosalbes, Amparo Latorre
Software Mentions: 3
Published: over 10 years ago
10.1038/s41598-017-18506-4
Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces
Cited by: 69
Author(s): Camilla Urbaniak, Aleksandra Checinska Sielaff, K. G. Frey, Jonathan Allen, Nitin Kumar Singh, Crystal Jaing, Kevin Wheeler, Kasthuri Venkateswaran
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12870-015-0430-8
Non-targeted metabolite profiling of citrus juices as a tool for variety discrimination and metabolite flow analysis
Cited by: 32
Author(s): Vicent Arbona, Domingo J. Iglesias
Software Mentions: 3
Published: almost 10 years ago
10.1038/s41598-018-25434-4
Identification and application of exogenous dsRNA confers plant protection against Sclerotinia sclerotiorum and Botrytis cinerea
Cited by: 135
Author(s): Austein McLoughlin, Nick Wytinck, P.L. Walker, Ian J. Girard, K. Y. Rashid, Teresa de Kievit, W. G. Dilantha Fernando, Steve Whyard, Mark F. Belmonte
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-017-09431-7
Biogeography shaped the metabolome of the genus Espeletia: a phytochemical perspective on an Andean adaptive radiation
Cited by: 25
Author(s): Guillermo F. Padilla-González, Mauricio Diazgranados, Fernando Batista Da Costa
Software Mentions: 3
Published: over 7 years ago
10.3897/zookeys.572.7177
Revision of the Malagasy Camponotus edmondi species group (Hymenoptera, Formicidae, Formicinae): integrating qualitative morphology and multivariate morphometric analysis
Cited by: 7
Author(s): Jean Claude Rakotonirina, Sándor Csősz, Brian L. Fisher
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0233896
Phenotypic responses of foxtail millet (Setaria italica) genotypes to phosphate supply under greenhouse and natural field conditions
Cited by: 12
Author(s): S. Antony Ceasar, Muthusamy Ramakrishnan, K. K. Vinod, G. Victor Roch, Hari D. Upadhyaya, Alison Baker, S. Ignacimuthu
Software Mentions: 3
Published: over 4 years ago
10.3897/zookeys.526.6037
Diagnostic survey of Malagasy Nesomyrmex species-groups and revision of hafahafa group species via morphology based cluster delimitation protocol
Cited by: 22
Author(s): Sándor Csősz, Brian L. Fisher
Software Mentions: 3
Published: about 9 years ago
10.1186/s12864-020-07191-9
Immune challenge reduces gut microbial diversity and triggers fertility-dependent gene expression changes in a social insect
Cited by: 5
Author(s): Matteo Negroni, Francisca H. I. D. Segers, Fanny Vogelweith, Susanne Foitzik
Software Mentions: 3
Published: almost 4 years ago
10.3389/fmicb.2015.00265
Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions
Cited by: 46
Author(s): Cheryl-Emiliane T. Chow, Danielle M. Winget, Richard Allen White, Steven J. Hallam, Curtis A. Suttle
Software Mentions: 3
Published: over 9 years ago
10.1038/s41598-017-08563-0
Patterns of transcriptional parallelism and variation in the developing olfactory system of Drosophila species
Cited by: 7
Author(s): Jia-Wern Pan, Qingyun Li, Scott Barish, Sumie Okuwa, Shuaiguo Zhao, Charles Soeder, Matthew Kanke, Corbin D. Jones, Pelin Volkan
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0127433
Data Mining Approaches for Genomic Biomarker Development: Applications Using Drug Screening Data from the Cancer Genome Project and the Cancer Cell Line Encyclopedia
Cited by: 25
Author(s): David G. Covell
Software Mentions: 3
Published: over 9 years ago
10.1038/srep12062
Differential and coherent processing patterns from small RNAs
Cited by: 21
Author(s): Sachin Pundhir, Jan Gorodkin
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0184373
Identification of sero-reactive antigens for the early diagnosis of Johne’s disease in cattle
Cited by: 14
Author(s): Lingling Li, John P. Bannantine, Joseph J. Campo, Arlo Randall, Yrjo T. Gröhn, Robab Katani, Megan A. Schilling, Jessica Radzio‐Basu, Vivek Kapur
Software Mentions: 3
Published: about 7 years ago
10.15252/msb.20177952
Modeling signaling‐dependent pluripotency with Boolean logic to predict cell fate transitions
Cited by: 42
Author(s): Ayako Yachie‐Kinoshita, Kento Onishi, Joel Östblom, Matthew A Langley, Eszter Pósfai, Janet Rossant, Peter W. Zandstra
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0064497
Gene Expression Profiling of Solitary Fibrous Tumors
Cited by: 21
Author(s): François Bertucci, Corinne Bouvier‐Labit, Pascal Finetti, Philippe Métellus, José Adelaı̈de, Karima Mokhtari, Dominique Figarella‐Branger, Anne‐Valérie Decouvelaere, Catherine Miquel, Jean‐Michel Coindre, Daniel Birnbaum
Software Mentions: 3
Published: over 11 years ago
10.1002/ece3.1896
Quantitative and qualitative shifts in defensive metabolites define chemical defense investment during leaf development in <i><scp>I</scp>nga</i>, a genus of tropical trees
Cited by: 44
Author(s): Natasha L. Wiggins, Dale L. Forrister, María‐José Endara, Phyllis D. Coley, Thomas A. Kursar
Software Mentions: 3
Published: almost 9 years ago
10.1111/mmi.14237
Systematic analysis of Type I‐E <i>Escherichia coli</i> CRISPR‐Cas PAM sequences ability to promote interference and primed adaptation
Cited by: 26
Author(s): Olga Musharova, Vasily Sitnik, Marnix Vlot, Ekaterina Savitskaya, Kirill A. Datsenko, Andrey Krivoy, Ivan Fedorov, Ekaterina Semenova, Stan J. J. Brouns, Konstantin Severinov
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.762
Disentangling environmental correlates of vascular plant biodiversity in a <scp>M</scp> editerranean hotspot
Cited by: 34
Author(s): Rafael Molina‐Venegas, Abelardo Aparicio, Francisco José Pina, B. Valdés, Juan Arroyo
Software Mentions: 3
Published: about 11 years ago
10.1002/ece3.3674
High site fidelity and restricted ranging patterns in southern Australian bottlenose dolphins
Cited by: 29
Author(s): Cecilia Passadore, Luciana M. Möller, Fernando Diaz‐Aguirre, Guido J. Parra
Software Mentions: 3
Published: almost 7 years ago
10.3390/proteomes7020019
A Preliminary Metagenome Analysis Based on a Combination of Protein Domains
Cited by: 0
Author(s): Yoji Igarashi, Daisuke Mori, Susumu Mitsuyama, Kazutoshi Yoshitake, Hiroaki Ono, Tsuyoshi Watanabe, Yukiko Taniuchi, Tomoko Sakami, Akira Kuwata, Takanori Kobayashi, Yuji Ishino, Shugo Watabe, Takashi Gojobori, Shuichi Asakawa
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0138210
Systems Analysis of Adaptive Responses to MAP Kinase Pathway Blockade in BRAF Mutant Melanoma
Cited by: 9
Author(s): Brian J. Capaldo, Devin G. Roller, Mark J. Axelrod, Alexander F. Koeppel, Emanuel F. Petricoin, Craig L. Slingluff, Michael J. Weber, Aaron J. Mackey, Daniel Gioeli, Stefan Bekiranov
Software Mentions: 3
Published: about 9 years ago
10.3390/jcdd6010007
Temporal Change of Extracellular Matrix during Vein Arterialization Remodeling in Rats
Cited by: 1
Author(s): Ayumi Aurea Miyakawa, Vinícius Bassaneze, Nubia Esteban Duarte, Thais Girão-Silva, Monica Nunes Bizerra, Julliana Carvalho de Campos, José Eduardo Krieger
Software Mentions: 3
Published: almost 6 years ago
10.1186/1471-2164-13-S6-S14
Methods for high-throughput MethylCap-Seq data analysis
Cited by: 16
Author(s): Blanca Rodriguez, David Frankhouser, Mark W. Murphy, Michael Trimarchi, Hok Hei Tam, John Curfman, Rita Huang, Michael W.Y. Chan, Hung Cheng Lai, Deval Parikh, Bryan Ball, Sebastian Schwind, William Blum, Guido Marcucci, Pearlly S. Yan, Ralf Bundschuh
Software Mentions: 3
Published: about 12 years ago
10.1111/jcmm.13370
Gα12 regulates osteoclastogenesis by modulating NFATc1 expression
Cited by: 10
Author(s): Min Kyoung Song, Cheol‐Kyu Park, Yong Deok Lee, Haemin Kim, Min Kyung Kim, Jun-Oh Kwon, Ja Hyun Koo, Min Sung Joo, Sang Geon Kim, Hong-Hee Kim
Software Mentions: 3
Published: about 7 years ago
10.1038/s41419-019-1892-7
Epigenetic re-wiring of breast cancer by pharmacological targeting of C-terminal binding protein
Cited by: 7
Author(s): Jung S. Byun, Samson Park, Dae Ik Yi, Jee-Hye Shin, Sara Gil Hernandez, Stephen M. Hewitt, Marc C. Nicklaus, Megan L. Peach, Laura Guasch, Binwu Tang, Lalage M. Wakefield, Tingfen Yan, Ambar Caban, Alana Jones, Mohamed Kabbout, Nasreen A. Vohra, Anna María Nápoles, Sandeep K. Singhal, Ryan Yancey, Adriana De Siervi, Kevin Gardner
Software Mentions: 3
Published: about 5 years ago
10.1016/j.molcel.2017.02.005
ERK-Induced Activation of TCF Family of SRF Cofactors Initiates a Chromatin Modification Cascade Associated with Transcription
Cited by: 43
Author(s): Cyril Esnault, Francesco Gualdrini, Stuart Horswell, Gavin Kelly, Aengus Stewart, Philip East, Nik Matthews, Richard Treisman
Software Mentions: 3
Published: over 7 years ago
10.1186/1755-8794-3-59
Birt-Hogg-Dubé renal tumors are genetically distinct from other renal neoplasias and are associated with up-regulation of mitochondrial gene expression
Cited by: 71
Author(s): Jeff Klomp, David Petillo, Natalie M. Niemi, Karl Dykema, Jindong Chen, Ximing J. Yang, Annika Sääf, Peter Zickert, Markus Aly, Ulf S.R. Bergerheim, Magnus Nordenskjöld, Sophie Gad, Sophie Giraud, Yves Denoux, Laurent Yonneau, A. Méjean, Viorel Vasiliu, Stéphane Richard, Jeffrey P. MacKeigan, Bin Tean Teh, Kyle A. Furge
Software Mentions: 3
Published: almost 14 years ago
10.1186/s13336-014-0015-z
Copy number variation analysis based on AluScan sequences
Cited by: 10
Author(s): Jian Feng Yang, Xueliang Ding, Lei Chen, Wai Kin Mat, Michelle Zhi Xu, Jin Fei Chen, Jian-Min Wang, Lin Xu, Wai Sang Poon, Ava Kwong, Gilberto Ka Kit Leung, Tze-Ching Tan, Chi Hung Yu, Yue Bin Ke, Xin Xu, Xiaoyan Ke, Rong Ma, Juliana C.N. Chan, Wei Qing Wan, Li Wei Zhang, Yogesh Kumar, Suk Ying Tsang, Shao Li, Hong Yang Wang, Hong Xue
Software Mentions: 3
Published: almost 10 years ago
10.1371/journal.pone.0222232
A half-century of changes in migratory landbird numbers along coastal Massachusetts
Cited by: 3
Author(s): Matthew Kamm, Trevor L. Lloyd-Evans, Maina C. Handmaker, J. Michael Reed
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0075057
Origins of Myc Proteins – Using Intrinsic Protein Disorder to Trace Distant Relatives
Cited by: 21
Author(s): Amir Mahani, Johan Henriksson, Anthony P. H. Wright
Software Mentions: 3
Published: about 11 years ago
10.1186/s40168-017-0266-6
Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences
Cited by: 113
Author(s): Emily K. Cope, Andrew N. Goldberg, Steven D. Pletcher, Susan V. Lynch
Software Mentions: 3
Published: over 7 years ago
10.1242/dmm.021105
From drug response profiling to target addiction scoring in cancer cell models
Cited by: 12
Author(s): Bhagwan Yadav, Peddinti Gopalacharyulu, Tea Pemovska, Suleiman A. Khan, Agnieszka Szwajda, Jing Tang, Krister Wennerberg, Tero Aittokallio
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.pone.0136047
Intraspecific Phenotypic Variation and Morphological Divergence of Strains of Folsomia candida (Willem) (Collembola: Isotomidae), the "Standard" Test Springtaill
Cited by: 11
Author(s): Thomas N. Tully, Mikhail Potapov
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.pone.0243336
Bioinformatic analysis linking genomic defects to chemosensitivity and mechanism of action
Cited by: 0
Author(s): David G. Covell
Software Mentions: 3
Published: over 3 years ago
10.1186/s40168-018-0522-4
Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
Cited by: 56
Author(s): Paula Dalcin Martins, Robert Danczak, Simon Roux, J. Howard Frank, Mikayla A. Borton, Richard A. Wolfe, Marie Burris, Michael J. Wilkins
Software Mentions: 3
Published: over 6 years ago
10.3390/cancers12040820
Frequent FOXA1-Activating Mutations in Extramammary Paget’s Disease
Cited by: 12
Author(s): Takuya Takeichi, Yusuke Okuno, Takaaki Matsumoto, Nobuyuki Tsunoda, Kyogo Suzuki, Kana Tanahashi, Michihiro Kono, Toyone Kikumori, Yoshinao Muro, Masashi Akiyama
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.ppat.1000781
Genome-Wide mRNA Expression Correlates of Viral Control in CD4+ T-Cells from HIV-1-Infected Individuals
Cited by: 166
Author(s): Margalida Rotger, Kristen K. Dang, Jacques Fellay, Erin L. Heinzen, Sheng Feng, Patrick Descombes, Kevin V. Shianna, Dongliang Ge, Huldrych F Günthard, David B. Goldstein, Amalio Telenti, Aids Immunology
Software Mentions: 3
Published: over 14 years ago
10.1038/s41598-017-04793-4
Identification of the ESKAPE pathogens by mass spectrometric analysis of microbial membrane glycolipids
Cited by: 56
Author(s): Lisa M. Leung, William E. Fondrie, Yohei Doi, J. Kristie Johnson, Dudley K. Strickland, Robert K. Ernst, David R. Goodlett
Software Mentions: 3
Published: over 7 years ago