Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1006453

https://doi.org/10.1371/journal.pcbi.1006453

Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

Cited by: 81
Author(s): Matthew L. Bendall, Miguel de Mulder, Luis P. Íñiguez, Aarón Lecanda, Marcos Pérez‐Losada, Mario Ostrowski, R. Brad Jones, Lubbertus C. F. Mulder, Gustavo Reyes‐Terán, Keith A. Crandall, Christopher E. Ormsby, Douglas F. Nixon
Published: about 5 years ago

Software Mentions 4

bioconductor: BitSeq
Papers that mentioned: 28
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: pvclust
Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
Papers that mentioned: 442
pypi: TEtranscripts
Tools for estimating differential enrichment of Transposable Elements and other highly repetitive regions
Papers that mentioned: 14