Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: picante

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/picante

Integrating Phylogenies and Ecology
28 versions
Latest release: over 4 years ago
24 dependent packages
4,746 downloads last month

Papers Mentioning picante 414

10.3389/fmicb.2019.02887
Soil Microbial Networks Shift Across a High-Elevation Successional Gradient
Cited by: 13
Author(s): Emily C. Farrer, Dorota L. Porazinska, Marko J. Spasojevic, Andrew J. King, Clifton P. Bueno de Mesquita, Samuel A. Sartwell, J. A. Smith, C. T. White, Steven K. Schmidt, Katharine N. Suding
Software Mentions: 6
Published: almost 5 years ago
10.3389/fmicb.2021.659918
Phylogeny- and Abundance-Based Metrics Allow for the Consistent Comparison of Core Gut Microbiome Diversity Indices Across Host Species
Cited by: 12
Author(s): Alice Risely, Mark A. F. Gillingham, Arnaud Béchet, Stefan Dominik Brändel, Alexander Christoph Heni, Marco Heurich, Sebastian Menke, Marta B. Manser, Marco Tschapka, . Wasimuddin, Simone Sommer
Software Mentions: 6
Published: over 3 years ago
10.3389/fmicb.2015.01013
Evolutionary history influences the salinity preference of bacterial taxa in wetland soils
Cited by: 65
Author(s): Ember M. Morrissey, Rima B. Franklin
Software Mentions: 6
Published: about 9 years ago
10.7717/peerj.997
Deep sequencing of the viral<i>phoH</i>gene reveals temporal variation, depth-specific composition, and persistent dominance of the same viral<i>phoH</i>genes in the Sargasso Sea
Cited by: 34
Author(s): Dawn B. Goldsmith, Rachel Parsons, Damitu Beyene, Peter Salamon, Mya Breitbart
Software Mentions: 6
Published: over 9 years ago
10.1128/mSystems.00423-19
Network Analysis of the Papaya Orchard Virome from Two Agroecological Regions of Chiapas, Mexico
Cited by: 25
Author(s): Ricardo I. Alcalá-Briseño, Kena Casarrubias-Castillo, Diana López-Ley, Karen A. Garrett, Laura Silva-Rosales
Software Mentions: 6
Published: almost 5 years ago
10.1111/1462-2920.15260
The biogeochemical variability of Arctic thermokarst ponds is reflected by stochastic and niche‐driven microbial community assembly processes
Cited by: 11
Author(s): Alizée Le Moigne, Maciej Bartosiewicz, Gabriela Schaepman‐Strub, Samuel Abiven, Jakob Pernthaler
Software Mentions: 6
Published: about 4 years ago
10.1002/ece3.2871
Assessing the relationships between phylogenetic and functional singularities in sharks (Chondrichthyes)
Cited by: 12
Author(s): Marie Cachera, François Le Loc’h
Software Mentions: 6
Published: over 7 years ago
10.1186/s12870-020-02680-1
Is salinity the main ecological factor that influences foliar nutrient resorption of desert plants in a hyper-arid environment?
Cited by: 11
Author(s): Lilong Wang, Xinfang Zhang, Shuang Xu
Software Mentions: 6
Published: about 4 years ago
10.1038/s41598-020-76917-2
Different response of the taxonomic, phylogenetic and functional diversity of birds to forest fragmentation
Cited by: 15
Author(s): Michał Bełcik, Magdalena Lenda, Tatsuya Amano, Piotr Skórka
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pone.0087553
Body Size Reductions in Nonmammalian Eutheriodont Therapsids (Synapsida) during the End-Permian Mass Extinction
Cited by: 63
Author(s): Adam K. Huttenlocker
Software Mentions: 6
Published: almost 11 years ago
10.3389/fmicb.2020.01624
Phylogenetic Responses of Marine Free-Living Bacterial Community to Phaeocystis globosa Bloom in Beibu Gulf, China
Cited by: 13
Author(s): Nan Li, Huaxian Zhao, Gonglingxia Jiang, Qiangsheng Xu, Junwu Tang, Xiaoli Li, Jiemei Wen, Huimin Liu, Cui Tang, Ke Dong, Zhenjun Kang
Software Mentions: 6
Published: over 4 years ago
10.1371/journal.pone.0251231
Assessment of the gut bacterial microbiome and metabolome of girls and women with Rett Syndrome
Cited by: 6
Author(s): Santosh Thapa, Alamelu Venkatachalam, Nabeel Khan, Mohammed Naqvi, Miriam Balderas, Jessica K. Runge, Anthony M. Haag, Kathleen M. Hoch, Daniel G. Glaze, Ruth Ann Luna, Kathleen J. Motil
Software Mentions: 6
Published: over 3 years ago
10.1186/s12866-020-01913-5
Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau
Cited by: 11
Author(s): Mengjun Zhang, Liwei Chai, Muke Huang, Weiqian Jia, Jiabao Guo, Yi Huang
Software Mentions: 6
Published: over 4 years ago
10.1093/femsec/fiz108
Diversity of tryptophan halogenases in sponges of the genus Aplysina
Cited by: 9
Author(s): Johanna Gutleben, Jasper J. Koehorst, Kyle McPherson, Shirley A. Pomponi, René H. Wijffels, Hauke Smidt, Detmer Sipkema
Software Mentions: 6
Published: over 5 years ago
10.1038/s41396-018-0264-0
Strong succession in arbuscular mycorrhizal fungal communities
Cited by: 78
Author(s): Cheng Gao, Liliam Montoya, Limei Xu, Mary Madera, Joy Hollingsworth, Elizabeth Purdom, Robert B. Hutmacher, Jeff Dahlberg, Devin Coleman‐Derr, Peggy G. Lemaux, John W. Taylor
Software Mentions: 6
Published: about 6 years ago
10.1371/journal.pone.0105043
Phylobetadiversity among Forest Types in the Brazilian Atlantic Forest Complex
Cited by: 56
Author(s): Leandro da Silva Duarte, Rodrigo Scarton Bergamin, Vinícius Marcilio-Silva, Guilherme Dubal dos Santos Seger, Márcia C. M. Marques
Software Mentions: 5
Published: over 10 years ago
10.1371/journal.pone.0173146
The effect of excluding juveniles on apparent adult olive baboons (Papio anubis) social networks
Cited by: 26
Author(s): Piotr Fedurek, Julia Lehmann
Software Mentions: 5
Published: over 7 years ago
10.3389/fmicb.2020.596589
The Transition From Stochastic to Deterministic Bacterial Community Assembly During Permafrost Thaw Succession
Cited by: 24
Author(s): Stacey J. Doherty, Robyn A. Barbato, A. Stuart Grandy, W. Kelley Thomas, Sylvain Monteux, Ellen Dorrepaal, Margareta Johansson, Jessica G. Ernakovich
Software Mentions: 5
Published: about 4 years ago
10.1002/ece3.7734
High foliar K and P resorption efficiencies in old‐growth tropical forests growing on nutrient‐poor soils
Cited by: 17
Author(s): Ifigenia Urbina, Oriol Grau, Jordi Sardans, Olga Margalef, Guille Peguero, Dolores Asensio, Joan Llusià, Romà Ogaya, Albert Gargallo‐Garriga, Leandro Van Langenhove, Lore T. Verryckt, Elodie A. Courtois, Clément Stahl, Jennifer L. Soong, Jérôme Chave, Bruno Hérault, Ivan A. Janssens, Emma J. Sayer, Josep Peñuelas
Software Mentions: 5
Published: over 3 years ago
10.3390/microorganisms9020229
Arbuscular Mycorrhizal Fungal Communities in the Soils of Desert Habitats
Cited by: 15
Author(s): Martti Vasar, John Davison, Siim‐Kaarel Sepp, Maarja Öpik, Mari Moora, Kadri Koorem, Yiming Meng, Jane Oja, Asem A. Akhmetzhanova, Saleh Al‐Quraishy, В. Г. Онипченко, Juan José Cantero, Sydney I. Glassman, Wael N. Hozzein, Martin Zobel
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41598-018-24931-w
Exposure to toxic metals triggers unique responses from the rat gut microbiota
Cited by: 85
Author(s): Joshua B. Richardson, Blair C. R. Dancy, Cassandra L. Horton, Young S. Lee, Michael S. Madejczyk, Zhenjiang Zech Xu, Gail Ackermann, Gregory Humphrey, Gustavo Palacios, Rob Knight, John A. Lewis
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0099871
Species Divergence and Phylogenetic Variation of Ecophysiological Traits in Lianas and Trees
Cited by: 12
Author(s): Rodrigo S. Ríos, Cristian Salgado‐Luarte, Ernesto Gianoli
Software Mentions: 5
Published: over 10 years ago
10.1371/journal.pone.0145364
Evolution and Phylogenetic Diversity of Yam Species (Dioscorea spp.): Implication for Conservation and Agricultural Practices
Cited by: 26
Author(s): Marie Florence Sandrine Ngo Ngwe, Dénis Ndoumou Omokolo, Simon Joly
Software Mentions: 5
Published: almost 9 years ago
10.1002/ece3.1665
Effects of size, neighbors, and site condition on tree growth in a subtropical evergreen and deciduous broad‐leaved mixed forest, China
Cited by: 29
Author(s): Xiaofeng Chi, Zhiyao Tang, Zongqiang Xie, Qiang Guo, Mi Zhang, Jielin Ge, Guoxing Xiong, Jingyun Fang
Software Mentions: 5
Published: about 9 years ago
10.1002/ece3.5711
Site‐specific responses of foliar fungal microbiomes to nutrient addition and herbivory at different spatial scales
Cited by: 15
Author(s): Candice Y. Lumibao, Elizabeth T. Borer, Bradford Condon, Linda L. Kinkel, Georgiana May, Eric W. Seabloom
Software Mentions: 5
Published: about 5 years ago
10.1098/rsos.160421
Phylogeny affects host's weight, immune response and parasitism in damselflies and dragonflies
Cited by: 18
Author(s): Jaakko J. Ilvonen, Jukka Suhonen
Software Mentions: 5
Published: about 8 years ago
10.1002/ece3.3942
Heard but not seen: Comparing bat assemblages and study methods in a mosaic landscape in the Western Ghats of India
Cited by: 16
Author(s): Claire F. R. Wordley, Mahesh Sankaran, Divya Mudappa, John D. Altringham
Software Mentions: 5
Published: over 6 years ago
10.1002/ece3.7434
Tree diversity and functional leaf traits drive herbivore‐associated microbiomes in subtropical China
Cited by: 1
Author(s): Yang Li, Douglas Chesters, Ming‐Qiang Wang, Tesfaye Wubet, Andreas Schuldt, Perttu Anttonen, Pengfei Guo, Jing‐Ting Chen, Qianxiong Zhou, Nai‐Li Zhang, Keping Ma, Helge Bruelheide, Chunsheng Wu, Chao‐Dong Zhu
Software Mentions: 5
Published: over 3 years ago
10.1002/ece3.5795
Climatic and vegetational drivers of insect beta diversity at the continental scale
Cited by: 10
Author(s): Douglas Chesters, Philip Beckschäfer, Michael C. Orr, Sarah J. Adamowicz, Kwok Pan Chun, Chao Zhu
Software Mentions: 5
Published: almost 5 years ago
10.1002/ece3.7776
Phylogenetic restriction of plant invasion in drought‐stressed environments: Implications for insect‐pollinated plant communities in water‐limited ecosystems
Cited by: 2
Author(s): Andrew D. F. Simon, Hannah E. Marx, Brian M. Starzomski
Software Mentions: 5
Published: over 3 years ago
10.1186/s42523-021-00115-2
Environmentally enriched housing conditions affect pig welfare, immune system and gut microbiota in early life
Cited by: 21
Author(s): Caifang Wen, I.D.E. van Dixhoorn, Dirkjan Schokker, H. Woelders, Norbert Stockhofe-Zurwieden, Johanna M.J. Rebel, Hauke Smidt
Software Mentions: 5
Published: over 3 years ago
10.7717/peerj.8549
Invasive vegetation affects amphibian skin microbiota and body condition
Cited by: 7
Author(s): Obed Hernández‐Gómez, Allison Q. Byrne, Alex R. Gunderson, Thomas S. Jenkinson, Clay F. Noss, Andrew P. Rothstein, Molly C. Womack, Erica Bree Rosenblum
Software Mentions: 5
Published: almost 5 years ago
10.3389/fpls.2020.575861
Effect of Inorganic N Top Dressing and Trichoderma harzianum Seed-Inoculation on Crop Yield and the Shaping of Root Microbial Communities of Wheat Plants Cultivated Under High Basal N Fertilization
Cited by: 29
Author(s): María Illescas, M. Belén Rubio, Víctor Hernández-Ruiz, María E. Morán-Diez, Ángel Emilio Martínez de Alba, Carlos Nicolás, Enrique Monte, Rosa Hermosa
Software Mentions: 5
Published: about 4 years ago
10.1186/s13059-021-02463-3
Deterministic transition of enterotypes shapes the infant gut microbiome at an early age
Cited by: 50
Author(s): Liwen Xiao, Jinfeng Wang, Jiayong Zheng, Xiaoqing Li, Fangqing Zhao
Software Mentions: 5
Published: over 3 years ago
10.3389/fmolb.2019.00115
Diazotroph Diversity and Nitrogen Fixation in Summer Active Perennial Grasses in a Mediterranean Region Agricultural Soil
Cited by: 26
Author(s): Vadakattu V. S. R. Gupta, Bangzhou Zhang, C. Ryan Penton, Julian Yu, James M. Tiedje
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0104787
Relationship between Phylogeny and Immunity Suggests Older Caribbean Coral Lineages Are More Resistant to Disease
Cited by: 36
Author(s): H C Jorge Pinzón, Joshuah Beach-Letendre, Ernesto Weil, Laura D. Mydlarz
Software Mentions: 5
Published: over 10 years ago
10.3390/insects10110391
Do Host Plant and Associated Ant Species Affect Microbial Communities in Myrmecophytes?
Cited by: 5
Author(s): Mario X. Ruiz-González, Céline Leroy, Alain Déjean, Hervé Gryta, Patricia Jargeat, Angelo D. Armijos Carrión, Jérôme Orivel
Software Mentions: 5
Published: about 5 years ago
10.1002/ece3.574
Physical disturbance shapes vascular plant diversity more profoundly than fire in the sagebrush steppe of southeastern Idaho, U.S.A
Cited by: 14
Author(s): Matt Lavin, Tyler J. Brummer, Ryan Lane. Quire, Bruce D. Maxwell, Lisa J. Rew
Software Mentions: 5
Published: over 11 years ago
10.1126/sciadv.aay1276
Evolutionary transitions toward pair living in nonhuman primates as stepping stones toward more complex societies
Cited by: 29
Author(s): Peter M. Kappeler, Luca Pozzi
Software Mentions: 5
Published: almost 5 years ago
10.7717/peerj.3688
Skin bacterial microbiome of a generalist Puerto Rican frog varies along elevation and land use gradients
Cited by: 45
Author(s): Myra C. Hughey, Janelle A. Pena, R. Vazquez Reyes, Daniel Medina, Lisa K. Belden, Patricia A. Burrowes
Software Mentions: 5
Published: about 7 years ago
10.3390/biology10030195
Extinction Risk Assessment of the Greek Endemic Flora
Cited by: 40
Author(s): Konstantinos Kougioumoutzis, Ioannis Kokkoris, Maria Panitsa, Arne Strid, Panayotis Dimopoulos
Software Mentions: 5
Published: over 3 years ago
10.1242/bio.014902
Feliform carnivores have a distinguished constitutive innate immune response
Cited by: 23
Author(s): Sonja K. Heinrich, Bettina Wachter, Ortwin Aschenborn, Susanne Thalwitzer, Jörg Melzheimer, Heribert Hofer, Gábor Á. Czirják
Software Mentions: 5
Published: over 8 years ago
10.1111/eva.12703
Manipulating plant phylogenetic diversity for green roof ecosystem service delivery
Cited by: 20
Author(s): J. Scott MacIvor, Nicholas Sookhan, Carlos Alberto Arnillas, Anushree Bhatt, Shameek Das, Simone-Louise E. Yasui, Garland Xie, Marc W. Cadotte
Software Mentions: 5
Published: about 6 years ago
10.1038/s41396-020-0625-3
Microbial symbionts and ecological divergence of Caribbean sponges: A new perspective on an ancient association
Cited by: 22
Author(s): Christopher Freeman, Cole G. Easson, Kenan O. Matterson, Robert Thacker, David M. Baker, Valerie J. Paul
Software Mentions: 5
Published: over 4 years ago
10.1007/s11356-019-06245-0
The effect of railways on bird diversity in farmland
Cited by: 9
Author(s): Joanna Kajzer‐Bonk, Piotr Skórka, Maciej Bonk, Magdalena Lenda, Elżbieta Rożej-Pabijan, Marta Wantuch, Dawid Moroń
Software Mentions: 5
Published: about 5 years ago
10.1186/s40793-021-00377-y
Archaeal and bacterial communities assembly and co-occurrence networks in subtropical mangrove sediments under Spartina alterniflora invasion
Cited by: 45
Author(s): Weidong Chen, Donghui Wen
Software Mentions: 5
Published: over 3 years ago
10.1038/s41396-019-0543-4
Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
Cited by: 124
Author(s): Selma Vieira, Johannes Sikorski, Sophie Dietz, Katharina Herz, Marion Schrumpf, Helge Bruelheide, Dierk Scheel, Michael W. Friedrich, Jörg Overmann
Software Mentions: 5
Published: about 5 years ago
10.7717/peerj.11012
Changes in diversity and community assembly of jumping spiders (Araneae: Salticidae) after rainforest conversion to rubber and oil palm plantations
Cited by: 13
Author(s): André Junggebauer, Tamara R. Hartke, Daniel Ramos, Ina Schaefer, Damayanti Buchori, Purnama Hidayat, Stefan Scheu, Jochen Drescher
Software Mentions: 5
Published: over 3 years ago
10.1186/s12866-020-01884-7
Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Cited by: 24
Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós‐Alió, Olga Sánchez, Silvia G. Acinas
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2018.01282
Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities
Cited by: 37
Author(s): Brandon Kieft, Li Zhou, Samuel Bryson, Byron C. Crump, Robert L. Hettich, Chongle Pan, Xavier Mayali, Robert F. Mueller
Software Mentions: 5
Published: over 6 years ago
10.1002/ece3.1203
Life history variation in <scp>B</scp> arents <scp>S</scp> ea fish: implications for sensitivity to fishing in a changing environment
Cited by: 35
Author(s): Magnus Aune Wiedmann, Raul Primicerio, Andrey V. Dolgov, Camilla A. Meyer Ottesen, Michaela Aschan
Software Mentions: 5
Published: about 10 years ago
10.1111/mec.15538
The balance between deterministic and stochastic processes in structuring lake bacterioplankton community over time
Cited by: 39
Author(s): Pablo S. Aguilar, Rubén Sommaruga
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0194131
Instar- and host-associated differentiation of bacterial communities in the Mediterranean fruit fly Ceratitis capitata
Cited by: 55
Author(s): Antonino Malacrinò, Orlando Campolo, Raúl F. Medina, Vincenzo Palmeri
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0240957
Relationships between climate and phylogenetic community structure of fossil pollen assemblages are not constant during the last deglaciation
Cited by: 0
Author(s): Kavya Pradhan, Diego Nieto‐Lugilde, Matthew C. Fitzpatrick
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-020-76289-7
Plant functional traits are correlated with species persistence in the herb layer of old-growth beech forests
Cited by: 14
Author(s): Giandiego Campetella, Stefano Chelli, Enrico Simonetti, Claudia Damiani, Sándor Bartha, Camilla Wellstein, Daniele Giorgini, Nicola Puletti, Ladislav Mucina, Marco Cervellini, Roberto Canullo
Software Mentions: 5
Published: about 4 years ago
10.1128/mSystems.00087-17
Tree Leaf Bacterial Community Structure and Diversity Differ along a Gradient of Urban Intensity
Cited by: 43
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 5
Published: almost 7 years ago
10.1002/ece3.4619
Environmental and evolutionary drivers of diversity patterns in the tea family (Theaceae s.s.) across China
Cited by: 17
Author(s): M. Babu Rao, Manuel J. Steinbauer, Xiao‐Guo Xiang, Minggang Zhang, Xiangcheng Mi, Jintun Zhang, Keping Ma, Jens‐Christian Svenning
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-019-56631-4
Helicobacter pylori infection associates with fecal microbiota composition and diversity
Cited by: 41
Author(s): Fabian Frost, Tim Kacprowski, Malte Rühlemann, Corinna Bang, André Franke, Kathrin Zimmermann, Matthias Nauck, Uwe Völker, Henry Völzke, Reiner Biffar, Christian Schulz, Julia Mayerle, Frank Ulrich Weiss, Georg Homuth, Markus M. Lerch
Software Mentions: 4
Published: almost 5 years ago
10.3390/microorganisms9030561
New Insights into Microbial Diversity of the Traditional Packed Table Olives Aloreña de Málaga through Metataxonomic Analysis
Cited by: 10
Author(s): Elio López-García, Antonio Benítez-Cabello, Javier Ramiro-García, Verónica Romero‐Gil, Francisco Rodríguez‐Gómez, Francisco Noé Arroyo‐López
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-59620-0
Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms
Cited by: 5
Author(s): Takashi Shirouzu, Shiro Matsuoka, Hideyuki Doi, Nobuaki Nagata, Masayuki Ushio, Kentaro Hosaka
Software Mentions: 4
Published: almost 5 years ago
10.3390/microorganisms9040822
Rootstocks Shape Their Microbiome—Bacterial Communities in the Rhizosphere of Different Grapevine Rootstocks
Cited by: 16
Author(s): Leonie Dries, Simone Bussotti, Carlo Pozzi, Robert Kunz, Sylvia Schnell, Otmar Löhnertz, Anne Vortkamp
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2019.01015
Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere
Cited by: 48
Author(s): Xin Qian, Hanzhou Li, Yong-Long Wang, Bian Wu, Mingsong Wu, Liang Chen, Xingchun Li, Ying Zhang, Xiangping Wang, Miaomiao Shi, Yong Zheng, Liang‐Dong Guo, Dianxiang Zhang
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2015.00891
Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland
Cited by: 85
Author(s): Rebecca C. Mueller, Jayne Belnap, Cheryl R. Kuske
Software Mentions: 4
Published: about 9 years ago
10.1038/s41598-019-42827-1
Contrasting latitudinal patterns in phylogenetic diversity between woody and herbaceous communities
Cited by: 23
Author(s): Jhonny Capichoni Massante, Lars Götzenberger, Krista Takkis, Tiit Hallikma, Ants Kaasik, Lauri Laanisto, Michael J. Hutchings, Pille Gerhold
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2012.00293
Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat
Cited by: 30
Author(s): David Armitage, Kimberley L. Gallagher, Nicholas D. Youngblut, Daniel H. Buckley, Stephen H. Zinder
Software Mentions: 4
Published: almost 13 years ago
10.1038/s41598-020-64801-y
Body-size Scaling is Related to Gut Microbial Diversity, Metabolism and Dietary Niche of Arboreal Folivorous Flying Squirrels
Cited by: 7
Author(s): Po‐Yu Liu, An-Chi Cheng, Shu‐Mei Huang, Hsiao Pei Lu, Tatsuo Oshida, Wenhua Liu, Hongjun Yu
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2016.00703
Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil
Cited by: 122
Author(s): Charles Pepe-Ranney, Ashley Campbell, Chantal Koechli, Sean T. Berthrong, Daniel H. Buckley
Software Mentions: 4
Published: over 8 years ago
10.3390/microorganisms7120611
Elevation is Associated with Human Skin Microbiomes
Cited by: 16
Author(s): Huan Li, Yijie Wang, Qiaoling Yu, Tianshu Feng, Rui Zhou, Liye Shao, Jiapeng Qu, Nan Li, Tingbei Bo, Huakun Zhou
Software Mentions: 4
Published: almost 5 years ago
10.3389/fmicb.2016.01933
Local and Regional Diversity Reveals Dispersal Limitation and Drift as Drivers for Groundwater Bacterial Communities from a Fractured Granite Formation
Cited by: 16
Author(s): Danielle Beaton, Bradley S. Stevenson, K.J. King-Sharp, Blake W. Stamps, Heather S. Nunn, Marilyne Stuart
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12866-020-01979-1
Habitat disturbance influences the skin microbiome of a rediscovered neotropical-montane frog
Cited by: 14
Author(s): Randall R. Jiménez, Gilbert Alvarado, José Luís Sandoval, Simone Sommer
Software Mentions: 4
Published: about 4 years ago
10.3389/fmicb.2019.01448
Decoupling the Dynamics of Bacterial Taxonomy and Antibiotic Resistance Function in a Subtropical Urban Reservoir as Revealed by High-Frequency Sampling
Cited by: 24
Author(s): Peiju Fang, Peng Feng, Xiaofei Gao, Peng Xiao, Jun Yang
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-018-33671-w
Disentangling direct and indirect effects of water availability, vegetation, and topography on avian diversity
Cited by: 12
Author(s): Vladimír Remeš, Lenka Harmáčková
Software Mentions: 4
Published: about 6 years ago
10.1186/s40168-018-0400-0
Effects of predation stress and food ration on perch gut microbiota
Cited by: 47
Author(s): Yinghua Zha, Alexander Eiler, Frank Johansson, Richard Svanbäck
Software Mentions: 4
Published: almost 7 years ago
10.3389/fmicb.2018.00169
Compost Addition Enhanced Hyphal Growth and Sporulation of Arbuscular Mycorrhizal Fungi without Affecting Their Community Composition in the Soil
Cited by: 48
Author(s): Wei Yang, Song Gu, Ying Xin, Ayodeji Bello, Wanqing Sun, Xiuhong Xu
Software Mentions: 4
Published: almost 7 years ago
10.3389/fmicb.2020.580363
Compositions and Co-occurrence Patterns of Bacterial Communities Associated With Polymer- and ASP-Flooded Petroleum Reservoir Blocks
Cited by: 6
Author(s): Guoling Ren, Jinlong Wang, Lei Qu, Wei Li, Min Hu, Lihong Bian, Yiting Zhang, Jing Liu, Xumou Dou, Xinhong Chen, Lulu Bai, Yue Li
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12864-016-3286-x
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
Cited by: 91
Author(s): Ann C. Gregory, Sergei A. Solonenko, J. Cesar Ignacio‐Espinoza, Kurt LaButti, Alex Copeland, Sebastian Sudek, Ashley Maitland, Lauren Chittick, Filipa Santos, Joshua S. Weitz, Alexandra Z. Worden, Tanja Woyke, Matthew B. Sullivan
Software Mentions: 4
Published: about 8 years ago
10.1038/s41598-017-00166-z
Environmental filtering structures tree functional traits combination and lineages across space in tropical tree assemblages
Cited by: 33
Author(s): Mengesha Asefa, Min Cao, Guocheng Zhang, Xiuqin Ci, Jie Li, Jie Yang
Software Mentions: 4
Published: over 7 years ago
10.1002/ece3.5303
Parthenogenetic <i>vs</i>. sexual reproduction in oribatid mite communities
Cited by: 24
Author(s): Mark Maraun, Tancredi Caruso, Jonathan Hense, Ricarda Lehmitz, Levan Mumladze, Maka Murvanidze, Ioana Nae, Julia Schulz, Anna Seniczak, Stefan Scheu
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2021.610823
The Structure of Rhizosphere Fungal Communities of Wild and Domesticated Rice: Changes in Diversity and Co-occurrence Patterns
Cited by: 23
Author(s): Jingjing Chang, Yu Sun, Lei Tian, Ji Li, Shasha Luo, Fahad Nasir, Eiko E. Kuramae, Chunjie Tian
Software Mentions: 4
Published: almost 4 years ago
10.1002/ece3.5019
Area and distance from mainland affect in different ways richness and phylogenetic diversity of snakes in Atlantic Forest coastal islands
Cited by: 10
Author(s): José Thales da Motta Portillo, Lilian Sayuri Ouchi-Melo, Lucas Batista Crivellari, Thiago Alves Lopes de Oliveira, Ricardo J. Sawaya, Leonardo da Silva Duarte
Software Mentions: 4
Published: over 5 years ago
10.1038/srep09396
A phylogenetically informed delineation of floristic regions within a biodiversity hotspot in Yunnan, China
Cited by: 39
Author(s): Rong Li, Nathan J. B. Kraft, Jie Yang, Yuhua Wang
Software Mentions: 4
Published: over 9 years ago
10.1002/ece3.3207
Phylogenetic conservatism and trait correlates of spring phenological responses to climate change in northeast China
Cited by: 20
Author(s): Yanjun Du, Jingru Chen, Charles G. Willis, Zhiqiang Zhou, Tong Liu, Wujun Dai, Yuan Zhao, Keping Ma
Software Mentions: 4
Published: over 7 years ago
10.1038/s41598-018-34640-z
Reduced diversity of gut microbiota in two Aedes mosquitoes species in areas of recent invasion
Cited by: 30
Author(s): Fausta Rosso, Valentina Tagliapietra, Davide Albanese, Massimo Pindo, Frédéric Baldacchino, Daniele Arnoldi, Claudio Donati, Annapaola Rizzoli
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-020-68497-y
Species traits predict the aryl hydrocarbon receptor 1 (AHR1) subtypes responsible for dioxin sensitivity in birds
Cited by: 5
Author(s): Kristin Bianchini, Christy A. Morrissey
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.7237
Occurrence data uncover patterns of allopatric divergence and interspecies interactions in the evolutionary history of <i>Sceloporus</i> lizards
Cited by: 6
Author(s): Julio A. Rivera, Heather N. Rich, A. Michelle Lawing, Michael S. Rosenberg, Emilı́a P. Martins
Software Mentions: 4
Published: almost 4 years ago
10.1002/ece3.6320
Changes in taxonomic and functional diversity of fish communities after catastrophic habitat alteration caused by construction of Three Gorges Dam
Cited by: 11
Author(s): Chen Zhang, Masami Fujiwara, Michaela Pawluk, Huanzhang Liu, Weiguo Cao, Xin Gao
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2019.00346
Successional Dynamics and Seascape-Level Patterns of Microbial Communities on the Canopy-Forming Kelps Nereocystis luetkeana and Macrocystis pyrifera
Cited by: 56
Author(s): Brooke L. Weigel, Catherine A. Pfister
Software Mentions: 4
Published: over 5 years ago
10.1002/ece3.3613
The roles of environment, space, and phylogeny in determining functional dispersion of rodents (Rodentia) in the Hengduan Mountains, China
Cited by: 18
Author(s): Yuanbao Du, Zhixin Wen, Jinlong Zhang, Xue Lv, Jilong Cheng, Deyan Ge, Lin Xia, Qisen Yang
Software Mentions: 4
Published: about 7 years ago
10.1098/rspb.2020.1070
Phylogenetic and functional distinctiveness explain alien plant population responses to competition
Cited by: 10
Author(s): Sam Levin, Raelene M. Crandall, Tyler Pokoski, Cláudia Stein, Tiffany M. Knight
Software Mentions: 4
Published: over 4 years ago
10.14814/phy2.14199
Oral vancomycin treatment does not alter markers of postprandial inflammation in lean and obese subjects
Cited by: 10
Author(s): Guido J. Bakker, Johan G. Schnitzler, Siroon Bekkering, Nicolien C. de Clercq, Annefleur M. Koopen, Annick V. Hartstra, Emma C. E. Meessen, Torsten P. M. Scheithauer, Maaike Winkelmeijer, Geesje M. Dallinga‐Thie, Patrice D. Cani, E. Marleen Kemper, Maarten R. Soeters, Jeffrey Kroon, Albert K. Groen, Daniël H. van Raalte, Hilde Herrema, Max Nieuwdorp
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2021.666584
Combined Stochastic and Deterministic Processes Drive Community Assembly of Anaerobic Microbiomes During Granule Flotation
Cited by: 63
Author(s): Anna Christine Trego, Paul G. McAteer, Corine Nzeteu, Thérèse Mahony, Florence Abram, Umer Zeeshan Ijaz, Vincent O’Flaherty
Software Mentions: 4
Published: over 3 years ago
10.1186/s12862-015-0289-1
Higher speciation and lower extinction rates influence mammal diversity gradients in Asia
Cited by: 17
Author(s): Krishnapriya Tamma, Uma Ramakrishnan
Software Mentions: 4
Published: almost 10 years ago
10.3389/fmicb.2020.00912
Microbial Composition and Functional Diversity Differ Across Urban Green Infrastructure Types
Cited by: 25
Author(s): Amanjit Gill, Kai Purnell, Matthew I. Palmer, Jaime A. Stein, Krista L. McGuire
Software Mentions: 4
Published: over 4 years ago
10.1093/cid/ciz906
Gut Microbiota Features Associated With Campylobacter Burden and Postnatal Linear Growth Deficits in a Peruvian Birth Cohort
Cited by: 19
Author(s): Saba Rouhani, Nicholas W. Griffin, Pablo Peñataro Yori, Maribel Paredes Olórtegui, Mery Siguas Salas, Dixner Rengifo Trigoso, Lawrence H. Moulton, Eric R. Houpt, Michael J. Barratt, Margaret Kosek, Jeffrey I. Gordon
Software Mentions: 4
Published: about 5 years ago
10.3389/fmicb.2021.626671
Impacts of Urbanization Undermine Nestedness of the Plant–Arbuscular Mycorrhizal Fungal Network
Cited by: 1
Author(s): Litao Lin, Yun Chen, Guoce Xu, Yuxin Zhang, Shuang Zhang, Keping Ma
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2021.689674
Adaptation of Soil Fungal Community Structure and Assembly to Long- Versus Short-Term Nitrogen Addition in a Tropical Forest
Cited by: 15
Author(s): Jinhong He, Shuo Jiao, Xiangping Tan, Hui Wei, Xiaomin Ma, Yonggang Nie, Juxiu Liu, Xiankai Lu, Jiangming Mo, Weijun Shen
Software Mentions: 4
Published: about 3 years ago
10.3389/fmicb.2020.01953
Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe
Cited by: 106
Author(s): Leho Tedersoo, Sten Anslan, Mohammad Bahram, Rein Drenkhan, Karin Pritsch, Franz Buegger, Allar Padari, Niloufar Hagh‐Doust, Vladimir Mikryukov, Daniyal Gohar, Rasekh Amiri, Indrek Hiiesalu, Reimo Lutter, Raul Rosenvald, Elisabeth Rähn, Kalev Adamson, Tiia Drenkhan, Hardi Tullus, Katrin Jürimaa, Ivar Sibul, Eveli Otsing, Sergei Põlme, Marek Metslaid, Kaire Loit, Ahto Agan, Rasmus Puusepp, Inge Varik, Urmas Kõljalg, Kessy Abarenkov
Software Mentions: 4
Published: about 4 years ago
10.1002/ece3.7005
Plant phylogeny drives arboreal caterpillar assemblages across the Holarctic
Cited by: 8
Author(s): Carlo L. Seifert, Martin Volf, Leonardo Ré Jorge, Tomokazu Abe, Grace Carscallen, Pavel Drozd, Rajesh Kumar, Greg P. A. Lamarre, Martin Libra, María Eugenia Losada, Scott E. Miller, Masashi Murakami, Geoffrey Nichols, Petr Pyszko, Martin Šigut, David L. Wagner, Vojtěch Novotný
Software Mentions: 4
Published: about 4 years ago
10.1002/ece3.4448
Functional Redundancy in bird community decreases with riparian forest width reduction
Cited by: 11
Author(s): Lucas Andrigo Maure, Rodolpho Credo Rodrigues, Ângelo V. Alcântara, Bruno F. C. B. Adorno, Douglas Luiz dos Santos, Eduardo Abreu, Rafael Mitsuo Tanaka, R. Manoel Gonçalves, Érica Hasui
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0145747
Relative Roles of Deterministic and Stochastic Processes in Driving the Vertical Distribution of Bacterial Communities in a Permafrost Core from the Qinghai-Tibet Plateau, China
Cited by: 30
Author(s): Weigang Hu, Qi Zhang, Tian Tian, Dingyao Li, Gang Cheng, Jing Mu, Qingbai Wu, Fujun Niu, James C. Stegen, Lizhe An, Huyuan Feng
Software Mentions: 4
Published: almost 9 years ago