cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1186/s12879-019-4123-z

DisV-HPV16, versatile and powerful software to detect HPV in RNA sequencing data
Cited by: 1
Author(s): Bingqing Yan, Xinyi Liu, Siwei Zhang, Siyang Yu, Fangjia Tong, Huanhuan Xie, Lixia Song, Yan Zhang, Lanlan Wei
Software Mentions: 2
Published: over 5 years ago

10.7150/ijms.60261

The underlying molecular mechanism and drugs for treatment in adrenal cortical carcinoma
Cited by: 4
Author(s): Chengquan Ma, Jian Xiong, Hao Su, Hongjun Li
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12865-021-00403-1

Comprehensive analysis of immunoglobulin and clinical variables identifies functional linkages and diagnostic indicators associated with Behcet’s disease patients receiving immunomodulatory treatment
Cited by: 3
Author(s): Linlin Cheng, Li Yang, Ziyan Wu, Liubing Li, Chenxi Liu, Jianhua Liu, Jiayu Dai, Wenjie Zheng, Fengchun Zhang, Liujun Tang, Xiaobo Yu, Yongzhe Li
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-019-43025-9

Fungal Elevational Rapoport pattern from a High Mountain in Japan
Cited by: 29
Author(s): Matthew Chidozie Ogwu, Koichi Takahashi, Ke Dong, Huacan Song, Itumeleng Moroenyane, Bruce Waldman, Jonathan M. Adams
Software Mentions: 2
Published: over 5 years ago

10.1186/s12935-021-02163-9

Effects of RNA methylation N6-methyladenosine regulators on malignant progression and prognosis of melanoma
Cited by: 15
Author(s): Jinfang Liu, Zijian Zhou, Ling Ma, Chujun Li, Yongcheng Lin, Ting Yu, Ji‐Fu Wei, Lingjun Zhu, Gang Yao
Software Mentions: 2
Published: over 3 years ago

10.3390/ani10060935

Ruminal Methanogenic Responses to the Thiamine Supplementation in High-Concentrate Diets
Cited by: 2
Author(s): Fuguang Xue, Yue Wang, Yiguang Zhao, Xuemei Nan, Dengke Hua, Fuyu Sun, Liguo Yang, Linshu Jiang, Benhai Xiong
Software Mentions: 2
Published: over 4 years ago

10.1186/s12967-019-1936-x

Molecular profiling of microinvasive breast cancer microenvironment progression
Cited by: 6
Author(s): Francesca Lessi, Cristian Scatena, Paolo Aretini, Michele Menicagli, Sara Franceschi, Antonio Giuseppe Naccarato, Chiara Maria Mazzanti
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.625244

Neutrophils Encompass a Regulatory Subset Suppressing T Cells in Apparently Healthy Cattle and Mice
Cited by: 10
Author(s): Marion Rambault, Émilie Doz-Deblauwe, Yves Le Vern, Florence Carreras, Patricia Cunha, Pierre Germon, Pascal Rainard, Nathalie Winter, Aude Rémot
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-021-07539-9

Whole-genome analysis of probiotic product isolates reveals the presence of genes related to antimicrobial resistance, virulence factors, and toxic metabolites, posing potential health risks
Cited by: 26
Author(s): Ying Wang, Qian Liang, Boxun Lu, Hong Shen, Shuyan Liu, Yue Shi, Sebastian Leptihn, Hong Li, Wei Jin, Chengzhi Liu, Hailong Xiao, Xiaowei Zheng, Chao Liu, Huan Chen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12863-021-00995-y

Genome-wide association studies of yield-related traits in high-latitude japonica rice
Cited by: 5
Author(s): Guomin Zhang, Rongsheng Wang, Junxun Ma, Hongjiang Gao, Lingwei Deng, Nanbo Wang, Yongli Wang, Jun Zhang, Kun Li, Wei Zhang, Fengchen Mu, Hui Liu, Ying Wang
Software Mentions: 2
Published: about 3 years ago

10.1155/2020/3925189

Genetic Polymorphisms and Forensic Efficiencies of a Set of Novel Autosomal InDel Markers in a Chinese Mongolian Group
Cited by: 4
Author(s): Wenqing Zhang, Xiaoye Jin, Yijie Wang, Tingting Kong, Wei Cui, Chong Chen, Yuxin Guo, Bofeng Zhu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmed.2021.713312

Topical Application of the PI3Kβ-Selective Small Molecule Inhibitor TGX-221 Is an Effective Treatment Option for Experimental Epidermolysis Bullosa Acquisita
Cited by: 4
Author(s): Hannah Zillikens, Anika Kasprick, Colin Osterloh, Natalie Gross, Michael Radziewitz, Cindy Hass, Veronika Hartmann, Martina Behnen-Härer, Nancy Ernst, Katharina Boch, Gestur Vidarsson, Remco Visser, Tamás Laskay, Xinhua Yu, Frank Petersen, Ralf J. Ludwig, Katja Bieber
Software Mentions: 2
Published: about 3 years ago

10.3390/ijms21031070

Local and Systemic Humoral Response to Autologous Lineage-Negative Cells Intrathecal Administration in ALS Patients
Cited by: 10
Author(s): Bartłomiej Baumert, Anna Sobuś, Monika Gołąb-Janowska, Zofia Ulańczyk, Edyta Paczkowska, Karolina Łuczkowska, Alicja Zawiślak, Sławomir Milczarek, Bogumiła Osękowska, Agnieszka Meller, Karolina Machowska-Sempruch, Agnieszka Wełnicka, Krzysztof Safranow, Przemysław Nowacki, Bogusław Machaliński
Software Mentions: 2
Published: almost 5 years ago

10.1111/acel.13446

The intrinsic chaperone network of Arabidopsis stem cells confers protection against proteotoxic stress
Cited by: 11
Author(s): Ernesto Llamas, Salvador Torres‐Montilla, Hyun Ju Lee, M. Victoria Barja, Elena Schlimgen, Nick Dunken, Prerana Wagle, Wolfgang Werr, Alga Zuccaro, Manuel Rodrı́guez-Concepción, David Vı́lchez
Software Mentions: 2
Published: over 3 years ago

10.3390/vaccines8020314

Search of Potential Vaccine Candidates against Trueperella pyogenes Infections through Proteomic and Bioinformatic Analysis
Cited by: 5
Author(s): Ángela Galán‐Relaño, Lídia Gómez-Gascón, Antonio Rodríguez-Franco, Inmaculada Luque, Belén Huerta, Carmen Tarradas, Manuel J. Rodríguez-Ortega
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.13139

FGFR3, as a receptor tyrosine kinase, is associated with differentiated biological functions and improved survival of glioma patients
Cited by: 10
Author(s): Zheng Wang, Chuanbao Zhang, Lihua Sun, Jingshan Liang, Xing Liu, Guanzhang Li, Kun Yao, Wei Zhang, Tao Jiang
Software Mentions: 2
Published: about 8 years ago

10.1523/JNEUROSCI.2571-18.2019

The Spinal Transcriptome after Cortical Stroke: In Search of Molecular Factors Regulating Spontaneous Recovery in the Spinal Cord
Cited by: 22
Author(s): Julia Kaiser, Martina A. Maibach, Iris Salpeter, Niels Hagenbuch, Vladimir B. C. de Souza, Mark D. Robinson, Martin E. Schwab
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-016-1148-9

IGDD: a database of intronless genes in dicots
Cited by: 21
Author(s): Hanwei Yan, Xiaogang Dai, Kai Feng, Qiuyue Ma, Tongming Yin
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-47332-z

Roux-Y Gastric Bypass and Sleeve Gastrectomy directly change gut microbiota composition independent of surgery type
Cited by: 53
Author(s): Fernanda L. Paganelli, Misha D. P. Luyer, C. Marijn Hazelbag, Hae‐Won Uh, Malbert R. C. Rogers, Danielle Adriaans, Roos-Marijn Berbers, Antoni P. A. Hendrickx, Marco C. Viveen, James Groot, Marc J. M. Bonten, Ad C. Fluit, Rob J. L. Willems, Helen L. Leavis
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8040488

Pectin Degradation is an Important Determinant for Alfalfa Silage Fermentation through the Rescheduling of the Bacterial Community
Cited by: 15
Author(s): Bing Wang, Zhiqiang Sun, Zhu Yu
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2017.02630

The Expressed MicroRNA—mRNA Interactions of Toxoplasma gondii
Cited by: 9
Author(s): İlhan E. Acar, Müşerref Duygu Saçar Demirci, Uwe Groß, Jens Allmer
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12902-019-0356-5

Genetic and epigenetic characteristics in ovarian tissues from polycystic ovary syndrome patients with irregular menstruation resemble those of ovarian cancer
Cited by: 24
Author(s): Jiao Jiao, Matthew Sagnelli, Bei Shi, Yuanyuan Fang, Zi-Qi Shen, Tianyu Tang, Bingying Dong, Da Li, Xiuxia Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.653283

Illumina Sequencing and Metabolomics Analysis Reveal Thiamine Modulation of Ruminal Microbiota and Metabolome Characteristics in Goats Fed a High-Concentrate Diet
Cited by: 15
Author(s): Yuxiang Ma, Chao Wang, Hao Zhang, Lihuai Yu, Dong Li, Daoqing Gong, Junhu Yao, Hongrong Wang
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.03012

Combined Application of High-Throughput Sequencing and Metabolomics Reveals Metabolically Active Microorganisms During Panxian Ham Processing
Cited by: 32
Author(s): Yu Mu, Wei Su, Yingchun Mu, Li Jiang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2021.653998

Characterization and Comparison of Bacterial Communities of an Invasive and Two Native Caribbean Seagrass Species Sheds Light on the Possible Influence of the Microbiome on Invasive Mechanisms
Cited by: 7
Author(s): Tânia Aires, Tamara M. Stuij, Gerard Muyzer, Ester A. Serrão, Aschwin H. Engelen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-018-4901-9

LTR-retrotransposon transcriptome modulation in response to endotoxin-induced stress in PBMCs
Cited by: 22
Author(s): Marine Mommert, Olivier Tabone, Guy Oriol, Elisabeth Cerrato, Audrey Guichard, Magali Naville, Paola Fournier, Jean‐Nicolas Volff, Alexandre Pachot, Guillaume Monneret, Fabienne Venet, Karen Brengel‐Pesce, Julien Textoris, François Mallet
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-019-6144-9

Genome-wide identification, expression profiles and regulatory network of MAPK cascade gene family in barley
Cited by: 42
Author(s): Licao Cui, Guang Yang, Jiali Yan, Yan Pan, Xiaojun Nie
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.00399

Unique Microbial Diversity and Metabolic Pathway Features of Fermented Vegetables From Hainan, China
Cited by: 36
Author(s): Qingyun Peng, Shuaiming Jiang, Jieling Chen, Chenchen Ma, Dongxue Huo, Yiming Shao, Jiachao Zhang
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms8020277

Diverse Microbial Community Profiles of Propionate-Degrading Cultures Derived from Different Sludge Sources of Anaerobic Wastewater Treatment Plants
Cited by: 16
Author(s): Pantakan Puengrang, Benjaphon Suraraksa, Peerada Prommeenate, Nimaradee Boonapatcharoen, Supapon Cheevadhanarak, Morakot Tanticharoen, Kanthida Kusonmano
Software Mentions: 2
Published: almost 5 years ago

10.1042/BSR20204394

Five candidate biomarkers associated with the diagnosis and prognosis of cervical cancer
Cited by: 8
Author(s): Hui-Lin Han, Jiang-Tao Mou, Wenping Jiang, Xiuming Zhai, Kun Deng
Software Mentions: 2
Published: almost 4 years ago

10.7150/ijms.47301

Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma
Cited by: 7
Author(s): Zeyu Liu, Yuxiang Wan, Yuqin Qiu, Xuewei Qi, Ming Yang, Jinchang Huang, Qiao‐Li Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21030866

Reduced miR-26b Expression in Megakaryocytes and Platelets Contributes to Elevated Level of Platelet Activation Status in Sepsis
Cited by: 27
Author(s): Bernadett Szilágyi, Zsolt Fejes, Szilárd Póliska, Marianna Pócsi, Zsolt Czimmerer, Andreas Patsalos, Ferenc Fenyvesi, Ágnes Rusznyák, György M. Nagy, György Kerekes, Mariann Berhés, István Szűcs, Satya P. Kunapuli, János Kappelmayer, Béla Nagy
Software Mentions: 2
Published: almost 5 years ago

10.3390/microorganisms9020235

Living Lithic and Sublithic Bacterial Communities in Namibian Drylands
Cited by: 6
Author(s): Steffi Genderjahn, Simon Lewin, Fabian Horn, Anja M. Schleicher, Kai Mangelsdorf, Dirk Wagner
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12935-020-01271-2

Identification of immune-related biomarkers associated with tumorigenesis and prognosis in cutaneous melanoma patients
Cited by: 40
Author(s): Biao Huang, Wei Han, Zu-Feng Sheng, Ge Shen
Software Mentions: 2
Published: over 4 years ago

10.1186/s13293-020-00343-2

MicroRNA profiling of the pig periaqueductal grey (PAG) region reveals candidates potentially related to sex-dependent differences
Cited by: 0
Author(s): Klaudia Pawlina-Tyszko, Maria Oczkowicz, Artur Gurgul, Tomasz Szmatoła, Monika Bugno‐Poniewierska
Software Mentions: 2
Published: about 4 years ago

10.1186/s42523-020-00041-9

Microbiome–host co-oscillation patterns in remodeling of colonic homeostasis during adaptation to a high-grain diet in a sheep model
Cited by: 8
Author(s): Limei Lin, Yue Wang, Liping Xu, Junhua Liu, Weiyun Zhu, Shengyong Mao
Software Mentions: 2
Published: over 4 years ago

10.1186/s13567-021-00914-0

A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets
Cited by: 7
Author(s): Zhigang Zhang, Tianshu Zhai, Mingshuo Li, Kun Zhang, Jingrui Li, Zheng Xu, Chaonan Tian, Chen Rui, Jianhui Dong, En‐Min Zhou, Yuchen Nan, Chunyan Wu
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-021-07459-8

Identification of the molecular regulation of differences in lipid deposition in dedifferentiated preadipocytes from different chicken tissues
Cited by: 10
Author(s): Zheng Ma, Na Luo, Lu Liu, Huanxian Cui, Jing Li, Hai Xiang, Hao Kang, Hua Li, Guiping Zhao
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-021-07442-3

Genomic insight into diet adaptation in the biological control agent Cryptolaemus montrouzieri
Cited by: 5
Author(s): Hao‐Sen Li, Yu‐Hao Huang, Meilan Chen, Renbin Zhan, Bo-Yuan Qiu, Patrick De Clercq, Gerald Heckel
Software Mentions: 2
Published: almost 4 years ago

10.1515/biol-2021-0063

In silico analysis of glycosyltransferase 2 family genes in duckweed (Spirodela polyrhiza) and its role in salt stress tolerance
Cited by: 0
Author(s): Meiqin Jiang, Peng Wang, Ligang Xu, Xiuxu Ye, Hongxiang Fan, Junxiang Cheng, Jinting Chen
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2016.00889

Responses of Aquatic Bacteria to Terrestrial Runoff: Effects on Community Structure and Key Taxonomic Groups
Cited by: 12
Author(s): Huong T. Le, Cuong Tu Ho, Quan Hong Trinh, Anh Duc Trinh, Minh Thi Nguyet Luu, Hai S. Tran, Didier Orange, Jean‐Louis Janeau, A. Merroune, Emma Rochelle-Newall, Thomas Pommier
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-62108-6

A genome-wide identification, characterization and functional analysis of salt-related long non-coding RNAs in non-model plant Pistacia vera L. using transcriptome high throughput sequencing
Cited by: 24
Author(s): Masoomeh Jannesar, Seyed Mahdi Seyedi, Maryam Moazzam Jazi, Vahid Niknam, Hassan Ebrahimzadeh, Christopher Botanga
Software Mentions: 2
Published: over 4 years ago

10.18632/aging.203318

MicroRNA-106b-5p inhibits growth and progression of lung adenocarcinoma cells by downregulating IGSF10
Cited by: 1
Author(s): Bowen Ling, Xin Liao, Qiang Tang, Guangbin Ye, Xiaoyun Bin, Jianchu Wang, Yaqin Pang, Guangzi Qi
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms20194864

Genome-Wide Identification, Evolution, and Expression Analysis of RING Finger Gene Family in Solanum lycopersicum
Cited by: 15
Author(s): Liang Yang, Mingjun Miao, Hongjun Lyu, Xue Cao, Ju Li, Li YueJian, Zhi Li, Wei Chang
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-021-01060-7

Strain engraftment competition and functional augmentation in a multi-donor fecal microbiota transplantation trial for obesity
Cited by: 46
Author(s): Brooke C. Wilson, Tommi Vatanen, Thilini N. Jayasinghe, Karen S. W. Leong, José G. B. Derraik, Benjamin B. Albert, Valentina Chiavaroli, Darren Svirskis, Kathryn Beck, Cathryn A. Conlon, Yannan Jiang, William Schierding, David J. Holland, Wayne S. Cutfield, Justin M. O’Sullivan
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-017-0324-0

Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes
Cited by: 56
Author(s): Cheng Wang, Dan Dong, Peter James Strong, Wenjie Zhu, Zhongshui Ma, Yong Qin, Weixiang Wu
Software Mentions: 2
Published: over 7 years ago

10.1186/s41065-020-00166-6

Immunological analysis and differential genes screening of venous thromboembolism
Cited by: 2
Author(s): Lina Gao, Qiang Li, Jianqin Xie, Wan-Xia Yang, Chongge You
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms20102491

Deep Insight into the Transcriptome of the Single Silk Gland of Bombyx mori
Cited by: 10
Author(s): Run Shi, Sanyuan Ma, Ting He, Jian Peng, Tong Zhang, Xiaoxu Chen, Xiaogang Wang, Jiasong Chang, Qingyou Xia, Ping Zhao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-021-03816-3

Proteomics of extracellular vesicles in plasma reveals the characteristics and residual traces of COVID-19 patients without underlying diseases after 3 months of recovery
Cited by: 20
Author(s): Kaimin Mao, Qi Tan, Yanling Ma, Sufei Wang, Hua Zhong, Yuhan Liao, Qi Huang, Wenjing Xiao, Hui Xia, Xingyi Tan, Ping Luo, Jing Xu, Danling Long, Yang Jin
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2164-14-S5-S8

Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes
Cited by: 29
Author(s): Ruosi Zhang, Lili Hao, Lingping Wang, Meili Chen, Wen Li, Rujiao Li, Jun Yu, Jingfa Xiao, Jiayan Wu
Software Mentions: 2
Published: about 11 years ago

10.1186/s40168-016-0215-9

The developing hypopharyngeal microbiota in early life
Cited by: 41
Author(s): Martin Steen Mortensen, Asker Brejnrod, Michael Roggenbuck, Waleed Abu Al‐Soud, Christina Balle, Karen A. Krogfelt, Jakob Stokholm, Jonathan Thorsen, Johannes Waage, Morten Arendt Rasmussen, Hans Bisgaard, Søren J. Sørensen
Software Mentions: 2
Published: about 8 years ago

10.1186/s41065-021-00190-0

Bioinformatics analysis of differentially expressed genes and identification of an miRNA–mRNA network associated with entorhinal cortex and hippocampus in Alzheimer’s disease
Cited by: 4
Author(s): Haoming Li, Lin Zou, Jinhong Shi, Xiao Han
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms20061519

Wnt/β-Catenin Pathway Is Involved in Cadmium-Induced Inhibition of Osteoblast Differentiation of Bone Marrow Mesenchymal Stem Cells
Cited by: 28
Author(s): Lu Wu, Qiujing Wei, Yingjian Lv, Junchao Xue, Bo Zhang, Qiang Sun, Tian Xiao, Rui Huang, Ping Wang, Xiangyu Dai, Haibo Xia, Jun-Jie Liu, Xingfen Yang, Qizhan Liu
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.01886

Pan-Genomic Study of Mycobacterium tuberculosis Reflecting the Primary/Secondary Genes, Generality/Individuality, and the Interconversion Through Copy Number Variations
Cited by: 29
Author(s): Tingting Yang, Jun Zhong, Ju Zhang, Cuidan Li, Xia Yu, Jingfa Xiao, Xiaoyun Jia, Nan Ding, Ge Ma, Guirong Wang, Liya Yue, Qian Liang, Yongjie Sheng, Yanhong Sun, Hairong Huang, Fei Chen
Software Mentions: 2
Published: over 6 years ago

10.1042/BSR20192436

Bioinformatics analysis of the potential biomarkers for acute respiratory distress syndrome
Cited by: 3
Author(s): Lin Liao, Liao Pinhu
Software Mentions: 2
Published: over 4 years ago

10.1186/s12935-019-0977-9

Inactivation of the Wnt/β-catenin signaling pathway underlies inhibitory role of microRNA-129-5p in epithelial–mesenchymal transition and angiogenesis of prostate cancer by targeting ZIC2
Cited by: 19
Author(s): Zhenming Jiang, Yuxi Zhang, Xi Chen, Pingeng Wu, Dong Chen
Software Mentions: 2
Published: about 5 years ago

10.1186/s13148-020-00940-3

Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
Cited by: 10
Author(s): Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qing
Software Mentions: 2
Published: about 4 years ago

10.7717/peerj.3881

Integration of lncRNA–miRNA–mRNA reveals novel insights into oviposition regulation in honey bees
Cited by: 37
Author(s): Xiao Chen, Ce Ma, Chao Chen, Qian Lü, Wei Shi, Zhiguang Liu, Huihua Wang, Haiyang Guo
Software Mentions: 2
Published: about 7 years ago

10.3390/molecules24010015

Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants
Cited by: 9
Author(s): He Su, Yang Chu, Junqi Bai, Lu Gong, Juan Huang, Wen Xu, Jing Zhang, Xiaohui Qiu, Jiang Xu, Zhixing Huang
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-47950-7

The large repertoire of conifer NLR resistance genes includes drought responsive and highly diversified RNLs
Cited by: 42
Author(s): Cyril Van Ghelder, Gérard Parent, Philippe Rigault, Julien Prunier, Isabelle Giguère, S. Caron, Juliana Stival Sena, Annie Deslauriers, Jean Bousquet, Daniel Esmenjaud, John J. MacKay
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01863

Transcriptome Analysis of the Clostridioides difficile Response to Different Doses of Bifidobacterium breve
Cited by: 7
Author(s): Jingpeng Yang, Hong Yang
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2017.01296

In-silico Taxonomic Classification of 373 Genomes Reveals Species Misidentification and New Genospecies within the Genus Pseudomonas
Cited by: 36
Author(s): Phuong Tran, Michael A. Savka, Han Ming Gan
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.00454

Rare Plankton Subcommunities Are Far More Affected by DNA Extraction Kits Than Abundant Plankton
Cited by: 23
Author(s): Min Liu, Yuanyuan Xue, Jun Yang
Software Mentions: 2
Published: over 5 years ago

10.1002/mbo3.673

High‐production dairy cattle exhibit different rumen and fecal bacterial community and rumen metabolite profile than low‐production cattle
Cited by: 33
Author(s): Yingyu Mu, Xueyan Lin, Zhonghua Wang, Qiuling Hou, Yun Wang, Zhiyong Hu
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-76887-5

Streptomyces sp. strain TOR3209: a rhizosphere bacterium promoting growth of tomato by affecting the rhizosphere microbial community
Cited by: 31
Author(s): Dong Hu, Shuhong Li, Ying Li, Jie Peng, Xiaoyan Wei, Jia Ma, Cuimian Zhang, Jun Nan, Entao Wang, Zhanwu Wang
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2018.00749

Overview of Virus Metagenomic Classification Methods and Their Biological Applications
Cited by: 95
Author(s): Sam Nooij, Dennis Schmitz, Harry Vennema, Annelies Kroneman, Marion Koopmans
Software Mentions: 2
Published: over 6 years ago

10.1038/s41438-020-00381-2

Coexpression network analysis reveals an MYB transcriptional activator involved in capsaicinoid biosynthesis in hot peppers
Cited by: 43
Author(s): Binmei Sun, Xin Zhou, Changming Chen, Chengjie Chen, Kunhao Chen, Muxi Chen, Shaoqun Liu, Guoju Chen, Bihao Cao, Fanrong Cao, Jing Liu, Zhiwen Zhu
Software Mentions: 2
Published: about 4 years ago

10.1186/s12935-021-01797-z

MicroRNA-1182 and let-7a exert synergistic inhibition on invasion, migration and autophagy of cholangiocarcinoma cells through down-regulation of NUAK1
Cited by: 16
Author(s): Xin Pan, Gang Wang, Baoming Wang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41438-021-00470-w

Isolation and comparative proteomic analysis of mitochondria from the pulp of ripening citrus fruit
Cited by: 10
Author(s): Xin Li, Yingfang Chai, Hong-Chang Yang, Zhen Tian, Chengyang Li, Rangwei Xu, Chunmei Shi, Feng Zhu, Yunliu Zeng, Xiuxin Deng, Pengwei Wang, Yunjiang Cheng
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41419-019-2177-x

Vitamin D promotes the cisplatin sensitivity of oral squamous cell carcinoma by inhibiting LCN2-modulated NF-κB pathway activation through RPS3
Cited by: 46
Author(s): Zheng‐Ming Huang, Yin Zhang, Haigang Li, Yufeng Zhou, Qianyu Zhang, Rui Chen, Tingting Jin, Kaishun Hu, Shihao Li, Yan Wang, Wei‐liang Chen, Zhiquan Huang
Software Mentions: 2
Published: almost 5 years ago

10.15698/mic2018.05.630

Spontaneous mutations in CYC8 and MIG1 suppress the short chronological lifespan of budding yeast lacking SNF1/AMPK
Cited by: 11
Author(s): Nazif Maqani, Ryan D. Fine, Mehreen Shahid, Mingguang Li, Elisa Enriquez-Hesles, Jeffrey S. Smith
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/1097602

Identification of a Robust Five-Gene Risk Model in Prostate Cancer: A Robust Likelihood-Based Survival Analysis
Cited by: 11
Author(s): Yutao Wang, Jiaxing Lin, Kexin Yan, Jianfeng Wang
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/6626094

Screening of Hub Genes Associated with Pulmonary Arterial Hypertension by Integrated Bioinformatic Analysis
Cited by: 9
Author(s): Yu Zeng, Nanhong Li, Zhenzhen Zheng, Riken Chen, Min Peng, Wang Liu, Jiang Zhu, Mingqing Zeng, Junfen Cheng, Cheng Hong
Software Mentions: 2
Published: over 3 years ago

10.1038/cddis.2017.398

Three-dimensional tumor cell growth stimulates autophagic flux and recapitulates chemotherapy resistance
Cited by: 40
Author(s): Corinna Bingel, E Koeneke, Johannes Ridinger, Annika Bittmann, Martin Sill, Heike Peterziel, Jagoda K. Wrobel, Inga Edeltraud Rettig, Till Milde, Uta Fernekorn, Frank Weise, Andreas Schober, Olaf Witt, Ina Oehme
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-69978-w

Immune outcomes of Zika virus infection in nonhuman primates
Cited by: 5
Author(s): Blake Schouest, Marissa Fahlberg, Elizabeth A. Scheef, Matthew J. Ward, Kyra Headrick, Dawn Szeltner, Robert V Blair, Margaret H. Gilbert, Lara A. Doyle-Meyers, Victoria W. Danner, Myrna C. Bonaldo, Dawn M. Wesson, Antonito T. Panganiban, Nicholas J. Maness
Software Mentions: 2
Published: over 4 years ago

10.1038/s41438-020-0261-0

Coriander Genomics Database: a genomic, transcriptomic, and metabolic database for coriander
Cited by: 31
Author(s): Xiaoming Song, Fulei Nie, Wei Chen, Xiao Ma, Ke Gong, Qing Yang, Jinpeng Wang, Nan Li, Pengchuan Sun, Qiaoying Pei, Tong Yu, Jingjing Hu, Xinyu Li, Tong Wu, Shuyan Feng, Xiuqing Li, Xiyin Wang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-021-07501-9

Transcriptomes analysis reveals novel insight into the molecular mechanisms of somatic embryogenesis in Hevea brasiliensis
Cited by: 15
Author(s): Ying Wang, Hui‐Liang Li, Yong-Kai Zhou, Dong Guo, Jiahong Zhu, Shi-Qing Peng
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules22122255

Identification of the Sex-Biased Gene Expression and Putative Sex-Associated Genes in Eucommia ulmoides Oliver Using Comparative Transcriptome Analyses
Cited by: 14
Author(s): Wencai Wang, Xianzhi Zhang
Software Mentions: 1
Published: almost 7 years ago

10.3390/molecules26030745

Fungicidal Activity of Volatile Organic Compounds Emitted by Burkholderia gladioli Strain BBB-01
Cited by: 15
Author(s): Yingtong Lin, Cheng-Cheng Lee, Wei-Ming Leu, Je-Jia Wu, Yu-Cheng Huang, Menghsiao Meng
Software Mentions: 1
Published: almost 4 years ago

10.3390/molecules25010137

A Widely Metabolomic Analysis Revealed Metabolic Alterations of Epimedium Pubescens Leaves at Different Growth Stages
Cited by: 12
Author(s): Zhenxian Qin, Dengqun Liao, Yalan Chen, Chenyang Zhang, Ruipeng An, Qing Zeng, Xianen Li
Software Mentions: 1
Published: almost 5 years ago

10.1002/mgg3.1404

Development of an immune‐related prognostic model for pediatric acute lymphoblastic leukemia patients
Cited by: 3
Author(s): Xi Quan, Nan Zhang, Ying Chen, Hanqing Zeng, Junming Deng
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21030975

Genome-Wide Analysis of the MYB Transcription Factor Superfamily in Physcomitrella patens
Cited by: 32
Author(s): Xiaojun Pu, Lixin Yang, Lina Liu, Xueyi Dong, Silin Chen, Zexi Chen, Gaojing Liu, Yulin Jia, Wenya Yuan, Li Liu
Software Mentions: 1
Published: almost 5 years ago

10.1590/1414-431X20164897

Analyzing gene expression profiles in dilated cardiomyopathy via bioinformatics methods
Cited by: 3
Author(s): Liming Wang, Li Zhu, Rumei Luan, L. Wang, Jian Fu, X. Wang, Li Sui
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms21072394

Comparative Proteomic Analysis by iTRAQ Reveals that Plastid Pigment Metabolism Contributes to Leaf Color Changes in Tobacco (Nicotiana tabacum) during Curing
Cited by: 20
Author(s): Shengjiang Wu, Yushuang Guo, Muhammad Faheem Adil, Shafaque Sehar, Bin Cai, Zhangmin Xiang, Youyou Tu, Degang Zhao, Imran Haider Shamsi
Software Mentions: 1
Published: over 4 years ago

10.1016/j.omtn.2019.04.013

MicroRNA-1305 Inhibits the Stemness of LCSCs and Tumorigenesis by Repressing the UBE2T-Dependent Akt-Signaling Pathway
Cited by: 35
Author(s): Xiaoyong Wei, Xiaolong You, Jianlong Zhang, Cuncai Zhou
Software Mentions: 1
Published: over 5 years ago

10.1080/21505594.2020.1747799

Molecularly defined extraintestinal pathogenic Escherichia coli status predicts virulence in a murine sepsis model better than does virotype, individual virulence genes, or clonal subset among E. coli ST131 isolates
Cited by: 12
Author(s): Irene Merino, Stephen Porter, Brian Johnston, Connie Clabots, Paul Thuras, Patrícia Ruíz-Garbajosa, Rafael Cantón, James R. Johnson
Software Mentions: 1
Published: over 4 years ago

10.3390/v11111070

A Multi-Omics Study of Chicken Infected by Nephropathogenic Infectious Bronchitis Virus
Cited by: 17
Author(s): Puzhi Xu, Ping Liu, Changming Zhou, Yan Shi, Qingpeng Wu, Yulin Yang, Guyue Li, Guoliang Hu, Xiaomin Guo
Software Mentions: 1
Published: about 5 years ago

10.3390/v13040671

Characterization of a Novel Group of Listeria Phages That Target Serotype 4b Listeria monocytogenes
Cited by: 8
Author(s): Yaxiong Song, Tracey L. Peters, Daniel W. Bryan, Lauren K. Hudson, Thomas G. Denes
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21082938

Hemokinin-1 Gene Expression Is Upregulated in Trigeminal Ganglia in an Inflammatory Orofacial Pain Model: Potential Role in Peripheral Sensitization
Cited by: 11
Author(s): Tímea Aczél, Angela Kecskés, József Kun, Kálmán Szenthe, Ferenc Bánáti, Susan Szathmáry, Róbert Herczeg, Péter Urbán, Attila Gyenesei, Balázs Gaszner, Zsuzsanna Helyes, Kata Bölcskei
Software Mentions: 1
Published: over 4 years ago

10.1186/s13068-019-1511-y

Quantitative proteomic analysis reveals the ethanologenic metabolism regulation of Ethanoligenens harbinense by exogenous ethanol addition
Cited by: 13
Author(s): Huahua Li, Xiaoxue Mei, Bingfeng Liu, Guo-Jun Xie, Nanqi Ren, Defeng Xing
Software Mentions: 1
Published: over 5 years ago

10.1186/s40851-019-0146-y

Gene expression profiles of dicyemid life-cycle stages may explain how dispersing larvae locate new hosts
Cited by: 0
Author(s): Tsai-Ming Lu, Hidetaka Furuya, Noriyuki Satoh
Software Mentions: 1
Published: about 5 years ago

10.3390/pathogens3010211

Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors
Cited by: 23
Author(s): Arthur Wasukira, Max Coulter, Noorah Al-Sowayeh, Richard Thwaites, Konrad Paszkiewicz, Jerome Kubiriba, J. J. Smith, Murray Grant, David J. Studholme
Software Mentions: 1
Published: over 10 years ago

10.1002/bit.27836

Assessing the influence of perfusion on cardiac microtissue maturation: A heart‐on‐chip platform embedding peristaltic pump capabilities
Cited by: 10
Author(s): Daniela Cruz-Moreira, Roberta Visone, Francisco Vasques‐Nóvoa, António S. Barros, Adelino Leite‐Moreira, Alberto Redaelli, Matteo Moretti
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21113991

AtSK11 and AtSK12 Mediate the Mild Osmotic Stress-Induced Root Growth Response in Arabidopsis
Cited by: 9
Author(s): Long Dong, Zhixin Wang, Jing Liu, Xuelu Wang
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.6455

Amorphous silica nanoparticles induce tumorigenesis via regulating ATP5H/SOD1-related oxidative stress, oxidative phosphorylation and EIF4G2/PABPC1-associated translational initiation
Cited by: 5
Author(s): Dongli Xie, Yang Zhou, Xiaogang Luo
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.11329

Genome-wide identification, classification, and expression analysis of the HSF gene family in pineapple (Ananas comosus)
Cited by: 7
Author(s): Lulu Wang, Qing Liu, Mengnan Chai, Huihuang Chen, Mohammad Aslam, Xiaoping Niu, Yuan Qin, Hanyang Cai
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21165721

Induction of Glucoraphasatin Biosynthesis Genes by MYB29 in Radish (Raphanus sativus L.) Roots
Cited by: 6
Author(s): Ji-Nam Kang, So Youn Won, Mi-Suk Seo, Jeongyeo Lee, Si Myung Lee, Soo-Jin Kwon, Jung Sun Kim
Software Mentions: 1
Published: over 4 years ago

Projects: cran: pheatmap

Papers Mentioning pheatmap 2,572