cran: pheatmap | Projects | Ecosyste.ms: Papers

10.3389/fendo.2019.00872

Dysregulation of the Mitochondrial Proteome Occurs in Mice Lacking Adiponectin Receptor 1
Cited by: 7
Author(s): Mark E Pepin, Christoph Koentges, Katharina Pfeil, Johannes Gollmer, Sophia Kersting, Sebastian Wiese, Michael M. Hoffmann, Katja E. Odening, Constantin von zur Mühlen, Philipp Diehl, Peter Stachon, Dennis Wolf, Adam R. Wende, Christoph Bode, Andreas Zirlik, Heiko Bugger
Software Mentions: 2
Published: over 6 years ago

10.3389/fendo.2021.700049

Differential Gene Expression and Biological Analyses of Primary Hepatocytes Following D-Chiro-Inositol Supplement
Cited by: 4
Author(s): Feier Cheng, Shaojun Yun, Jianhua Cao, Mingchang Chang, Jiao Meng, Jingyu Liu, Yanfen Cheng, Cuiping Feng
Software Mentions: 2
Published: about 5 years ago

10.7150/ijms.47301

Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma
Cited by: 7
Author(s): Zeyu Liu, Yuxiang Wan, Yuqin Qiu, Xuewei Qi, Ming Yang, Jinchang Huang, Qiao‐Li Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2021.689707

Constitutive TRIM22 Expression in the Respiratory Tract Confers a Pre-Existing Defence Against Influenza A Virus Infection
Cited by: 4
Author(s): Matthew Charman, Steven McFarlane, Joanna K. Wojtus, Elizabeth Sloan, Rebecca Dewar, Gail Leeming, Mohammed Al-Saadi, Laura Hunter, Miles W. Carroll, James Stewart, Paul Digard, Edward Hutchinson, Chris Boutell
Software Mentions: 2
Published: almost 5 years ago

10.3390/cancers11121981

The Hidden Story of Heterogeneous B-raf V600E Mutation Quantitative Protein Expression in Metastatic Melanoma—Association with Clinical Outcome and Tumor Phenotypes
Cited by: 17
Author(s): Lázaro Betancourt, Attila Marcell Szász, Magdalena Kuras, Jimmy Rodriguez Murillo, Y. Sugita, Indira Pla, Zsolt Horváth, Krzysztof Pawłowski, Melinda Rezeli, Kenichi Miharada, Jeovanis Gil, Jonatan Eriksson, Roger Appelqvist, Tasso Miliotis, Bo Baldetorp, Christian Ingvar, Håkan Olsson, Lotta Lundgren, Péter Horvatovich, Charlotte Welinder, Elisabet Wieslander, Ho Jeong Kwon, Johan Malm, István Németh, Göran Jönsson, David Fenyö, Aniel Sánchez, György Markó-Varga
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0228496

The distal intestinal microbiome of hybrids of Hainan black goats and Saanen goats
Cited by: 8
Author(s): Shuaiming Jiang, Dongxue Huo, Zhengkai You, Qingyun Peng, Chenchen Ma, Haibo Chang, Xiangguo Lin, Lu Wang, Jiachao Zhang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0199621

A microRNA signature and TGF-β1 response were identified as the key master regulators for spaceflight response
Cited by: 30
Author(s): Afshin Beheshti, Shayoni Ray, Homer Fogle, Daniel C. Berrios, Sylvain V. Costes
Software Mentions: 2
Published: about 8 years ago

10.7150/ijms.60261

The underlying molecular mechanism and drugs for treatment in adrenal cortical carcinoma
Cited by: 4
Author(s): Chengquan Ma, Jian Xiong, Hao Su, Hongjun Li
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0211378

The epiphytic microbiota of sour rot-affected grapes differs minimally from that of healthy grapes, indicating causal organisms are already present on healthy berries
Cited by: 10
Author(s): Megan E. Hall, Isabelle O’Bryon, Wayne F. Wilcox, Michael V. Osier, Lance Cadle‐Davidson
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0229125

Comparative genomic analysis of Proteus spp. isolated from tree shrews indicated unexpectedly high genetic diversity
Cited by: 9
Author(s): Wenpeng Gu, Wenguang Wang, Pinfen Tong, Chenxiu Liu, Jinsheng Jia, Caixia Lü, Yuanyuan Han, Xiaomei Sun, Dexuan Kuang, Na Li, Jiejie Dai
Software Mentions: 2
Published: over 6 years ago

10.1155/2021/5536330

The Function and Prognostic Value of RNA-Binding Proteins in Colorectal Adenocarcinoma Were Analyzed Based on Bioinformatics of Smart Medical Big Data
Cited by: 1
Author(s): Haoran Zhao, Peng Wang, Haishi Liu, Yueyang Li, Qian Luo, Man Li, Yubao Zhang, Zengfu Song
Software Mentions: 2
Published: about 5 years ago

10.1186/s13045-021-01045-x

The construction, expression, and enhanced anti-tumor activity of YM101: a bispecific antibody simultaneously targeting TGF-β and PD-L1
Cited by: 90
Author(s): Ming Yi, Jing Zhang, An‐Ping Li, Mengke Niu, Yongxiang Yan, Yanmei Jiao, Suxia Luo, Pengfei Zhou, Kongming Wu
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0169874

Spatial and Host-Related Variation in Prevalence and Population Density of Wheat Curl Mite (Aceria tosichella) Cryptic Genotypes in Agricultural Landscapes
Cited by: 22
Author(s): Anna Skoracka, Mariusz Lewandowski, B. G. Rector, Wiktoria Szydło, Lechosław Kuczyński
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0192812

Transcriptome-based signature predicts the effect of taxol in serous ovarian cancer
Cited by: 6
Author(s): Shunyu Hou, Jing Dai
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0220374

Molecular identification of the phosphate transporter family 1 (PHT1) genes and their expression profiles in response to phosphorus deprivation and other abiotic stresses in Brassica napus
Cited by: 30
Author(s): Li Yu, Xue Wang, Hao Zhang, Sheliang Wang, Xiangsheng Ye, Lei Shi, Fangsen Xu, Guangda Ding
Software Mentions: 2
Published: about 7 years ago

10.3390/ijerph16050683

Prevalence of Antibiotic Resistance Genes in Air-Conditioning Systems in Hospitals, Farms, and Residences
Cited by: 22
Author(s): Yaying Li, Hongkai Liao, Huaiying Yao
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0122935

Transcriptome Markers of Viral Persistence in Naturally-Infected Andes Virus (Bunyaviridae) Seropositive Long-Tailed Pygmy Rice Rats
Cited by: 5
Author(s): Corey L. Campbell, Fernando Torres-Pérez, Mariana Acuña-Retamar, Tony Schountz
Software Mentions: 2
Published: over 11 years ago

10.1007/s10295-018-2059-8

Genomic and transcriptomic comparison of <i>Aspergillus oryzae</i> strains: a case study in soy sauce koji fermentation
Cited by: 30
Author(s): Yiyi Zhong, Xunyu Lu, Lei Xing, Shiu Woon Allen Ho, Hoi Shan Kwan
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0170199

Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing
Cited by: 100
Author(s): Mathis Hjort Hjelmsø, Maria Hellmér, Xavier Fernández-Cassi, Natàlia Timoneda, Oksana Lukjancenko, Michael Seidel, Dennis Elsäßer, Frank Møller Aarestrup, Charlotta Löfström, Sı́lvia Bofill-Mas, Josep F. Abril, Rosina Gironés, Anna Charlotte Schultz
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0052730

Pyrosequencing Investigation into the Bacterial Community in Permafrost Soils along the China-Russia Crude Oil Pipeline (CRCOP)
Cited by: 53
Author(s): Shuai Yang, Wen Xi, Huijun Jin, Qingbai Wu
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0252866

Nutritional deficiency in scarlet eggplant limits its growth by modifying the absorption and use efficiency of macronutrients
Cited by: 4
Author(s): Gelza Carliane Marques Teixeira, Renato de Mello Prado, Kamilla Silva Oliveira, Antônio Carlos Buchelt, Antônio Márcio Souza Rocha, Michelle de Souza Santos
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0255463

Microbiome of the wasp Vespula pensylvanica in native and invasive populations, and associations with Moku virus
Cited by: 1
Author(s): Jason A. Rothman, Kevin J. Loope, Quinn S. McFrederick, Erin E. Wilson Rankin
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pntd.0007673

Transcriptional blood signatures for active and amphotericin B treated visceral leishmaniasis in India
Cited by: 14
Author(s): Michaela Fakiola, O. P. Singh, Genevieve Syn, T. N. Singh, Bhawana Singh, Jaya Chakravarty, Jenefer M. Blackwell
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pgen.1008401

A small set of conserved genes, including sp5 and Hox, are activated by Wnt signaling in the posterior of planarians and acoels
Cited by: 23
Author(s): Aneesha G. Tewari, Jared H. Owen, Christian P. Petersen, Daniel E. Wagner, Peter W. Reddien
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.jlr.2021.100096

PCSK9 is not secreted from mature differentiated intestinal cells
Cited by: 4
Author(s): François Marchand, Aurélie Thedrez, Damien Garçon, Audrey Ayer, Thibaud Sotin, Wieneke Dijk, Claire Blanchard, Gilliane Chadeuf, Lucie Arnaud, Mikaël Croyal, Laurianne Van Landeghem, Mélissa Touvron, Xavier Prieur, Anna Roubtsova, Nabil G. Seidah, Annik Prat, Bertrand Cariou, Cédric Le May
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0195771

High-resolution temporal and regional mapping of MAPT expression and splicing in human brain development
Cited by: 55
Author(s): Marco M. Hefti, Kurt Farrell, SoongHo Kim, Kathryn R. Bowles, Mary Fowkes, Towfique Raj, John F. Crary
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.40655

Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis
Cited by: 64
Author(s): Leonardo Furci, Ritushree Jain, Joost H. M. Stassen, Oliver Berkowitz, James Whelan, David Roquis, Victoire Baillet, Vincent Colot, Frank Johannes, Jurriaan Ton
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.59795

Amino acid synthesis loss in parasitoid wasps and other hymenopterans
Cited by: 0
Author(s): Xinhai Ye, Shijiao Xiong, Ziwen Teng, Yi Yang, Jiale Wang, Kaili Yu, Huizi Wu, Mei Yang, Zhichao Yan, Sammy Cheng, Chuanlin Yin, Fang Wang, Hongwei Yao, Qi Fang, Qisheng Song, John H. Werren, Gōngyín Yè, Fēi Li
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2021.703667

Convergent Epigenetic Mechanisms Avoid Constitutive Expression of Immune Receptor Gene Subsets
Cited by: 11
Author(s): Damián Alejandro Cambiagno, José Roberto Torres, María Elena Alvarez
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2021.725728

Integrated Genomic Analyses From Low-Depth Sequencing Help Resolve Phylogenetic Incongruence in the Bamboos (Poaceae: Bambusoideae)
Cited by: 3
Author(s): Domitille Chalopin, Lynn G. Clark, William P. Wysocki, Minkyu Park, Melvin R. Duvall, Jeffrey L. Bennetzen
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2017.00271

Transcriptomic Analysis of Thermally Stressed Symbiodinium Reveals Differential Expression of Stress and Metabolism Genes
Cited by: 72
Author(s): Sarah L. Gierz, Sylvain Forêt, William Leggat
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2020.01193

Transcriptome Analysis of Solanum Tuberosum Genotype RH89-039-16 in Response to Chitosan
Cited by: 11
Author(s): Philipp Lemke, Bruno M. Moerschbacher, Ratna Singh
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2021.729328

Genomic Prediction and the Practical Breeding of 12 Quantitative-Inherited Traits in Cucumber (Cucumis sativus L.)
Cited by: 1
Author(s): Ce Liu, Huan Liu, Yike Han, Wang Xiao, Yuanyuan Ding, Huanwen Meng, Zhihui Cheng
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2020.00484

Evolution and Functional Divergence of the Fructokinase Gene Family in Populus
Cited by: 4
Author(s): Weijie Xu, Yiyang Zhao, Sisi Chen, Jianbo Xie, Deqiang Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fpsyt.2020.603014

Risk Factors Underlying COVID-19 Lockdown-Induced Mental Distress
Cited by: 45
Author(s): Jan Sebastian Novotný, Juan P. González-Rivas, Šárka Kunzová, Mária Skladaná, Anna Pospíšilová, Anna Polcrová, Jose Ramon Medina-Inojosa, Francisco López-Jiménez, Yonas E. Geda, Gorazd B. Stokin
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0218279

ZEB1 insufficiency causes corneal endothelial cell state transition and altered cellular processing
Cited by: 21
Author(s): Ricardo F. Frausto, Dang Huu Chung, Payton Boere, Vinay Swamy, Huong Duong, Liyo Kao, Rustam Azimov, Wenlin Zhang, Liam Carrigan, Davey Wong, Marco Morselli, Marina Zakharevich, E. Maryam Hanser, Austin Connor Kassels, Ira Kurtz, Matteo Pellegrini, Anthony J. Aldave
Software Mentions: 2
Published: about 7 years ago

10.3389/fvets.2020.00642

RNA-Seq Whole Transcriptome Analysis of Bovine Mammary Epithelial Cells in Response to Intracellular Staphylococcus aureus
Cited by: 9
Author(s): Xiaozhou Wang, Feng Su, Xiaohui Yu, Nan Geng, Liping Li, Run Wang, Meihua Zhang, Jianzhu Liu, Yongxia Liu, Bo Han
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-03820-8

Tracing the epidemic history of HIV-1 CRF01_AE clusters using near-complete genome sequences
Cited by: 31
Author(s): Xingguang Li, Haizhou Liu, Lu Liu, Yi Feng, Marcia L. Kalish, Simon Y. W. Ho, Yiming Shao
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2020.00625

Genome-Wide Association Study Reveals the Genetic Architecture of Stripe Rust Resistance at the Adult Plant Stage in Chinese Endemic Wheat
Cited by: 6
Author(s): Jing Li, Yunfeng Jiang, Fangjie Yao, Long Li, Yuqi Wang, Yu Wu, Hao Li, Jirui Wang, Qiantao Jiang, Houyang Kang, Wei Li, Pengfei Qi, Jian Ma, Zhien Pu, Shoufen Dai, Yuming Wei, Youliang Zheng, Guoyue Chen
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2021.667929

Genome-Wide Identification and Evolutionary Analysis of Gossypium Tubby-Like Protein (TLP) Gene Family and Expression Analyses During Salt and Drought Stress
Cited by: 13
Author(s): Nasreen Bano, Shafquat Fakhrah, Chandra Sekhar Mohanty, Sumit K. Bag
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-10436-5

Microbial communities in peatlands along a chronosequence on the Sanjiang Plain, China
Cited by: 16
Author(s): Xue Zhou, Zhenqing Zhang, Lei Tian, Xiujun Li, Chunjie Tian
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0086318

CoryneBase: Corynebacterium Genomic Resources and Analysis Tools at Your Fingertips
Cited by: 5
Author(s): Hamed Heydari, Cheuk Chuen Siow, Mui Fern Tan, Nicholas S. Jakubovics, Wei Yee Wee, Naresh V.R. Mutha, George T.F. Wong, Mia Yang Ang, Amir Hessam Yazdi, Siew Woh Choo
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-017-18773-1

Identification and validation of an 18-gene signature highly-predictive of bladder cancer metastasis
Cited by: 8
Author(s): Beihe Wang, Fangning Wan, Haoyue Sheng, Yiping Zhu, Guohai Shi, Ye Zhang, Bo Dai, Yijun Shen, Yao Zhu, Dingwei Ye
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-20935-8

Impact of mid-season sulphur deficiency on wheat nitrogen metabolism and biosynthesis of grain protein
Cited by: 39
Author(s): Zitong Yu, Angéla Juhász, Shahidul Islam, Dean Diepeveen, Jingjuan Zhang, Penghao Wang, Wujun Ma
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-22753-4

Allele-specific expression in a family quartet with autism reveals mono-to-biallelic switch and novel transcriptional processes of autism susceptibility genes
Cited by: 13
Author(s): Chun‐Yen Lin, Kai Wei Chang, Chia Yi Lin, Jia Ying Wu, Hilary Coon, Pei Hsin Huang, Hong Nerng Ho, Schahram Akbarian, Susan Shur‐Fen Gau, Hsien-Sung Huang
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2020.00406

Genome-Wide Identification of Peanut KCS Genes Reveals That AhKCS1 and AhKCS28 Are Involved in Regulating VLCFA Contents in Seeds
Cited by: 18
Author(s): Dongxin Huai, Xiaomeng Xue, Yang Li, Peng Wang, Jianguo Li, Liying Yan, Yuning Chen, Xin Wang, Nian Liu, Yanping Kang, Zhihui Wang, Yi Huang, Huifang Jiang, Yong Lei, Boshou Liao
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-23189-6

The role of cuticular hydrocarbons in mate recognition in Drosophila suzukii
Cited by: 50
Author(s): Yannick Snellings, Beatriz Herrera, Bruna Wildemann, Melissa Beelen, Liesbeth Zwarts, Tom Wenseleers, Patrick Callaerts
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2015.00882

Evolution, diversification, and expression of KNOX proteins in plants
Cited by: 37
Author(s): Jie Gao, Xue Yang, Wei Zhao, Tiange Lang, Tore Samuelsson
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-018-26718-5

Transcriptome analysis of the reef-building octocoral, Heliopora coerulea
Cited by: 16
Author(s): Christine Guzman, Chuya Shinzato, Tsai-Ming Lu, Cecilia Conaco
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-27479-x

Damage-associated molecular pattern recognition is required for induction of retinal neuroprotective pathways in a sex-dependent manner
Cited by: 6
Author(s): Marcus Hooper, Jiangang Wang, Robert Browning, John D. Ash
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pgen.1009234

A novel gene-diet interaction promotes organismal lifespan and host protection during infection via the mitochondrial UPR
Cited by: 13
Author(s): Mustafi Raisa Amin, Siraje Arif Mahmud, Jonathan Dowgielewicz, Madhab Sapkota, Mark W. Pellegrino
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.607893

Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae)
Cited by: 11
Author(s): Mert Dogan, Milan Pouch, Terezie Mandáková, Petra Hloušková, Xi Guo, P.J.D. Winter, Zuzana Chumová, Adriaan van Niekerk, Klaus Mummenhoff, Ihsan A. Al‐Shehbaz, Ladislav Mucina, Martin A. Lysak
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-31432-3

Metabolome and molecular basis for carbohydrate increase and nitrate reduction in burley tobacco seedlings by glycerol through upregulating carbon and nitrogen metabolism
Cited by: 8
Author(s): Yafei Li, Dong Chil Chang, Huijuan Yang, Jing Wang, Hongzhi Shi
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.58124

Quantitative mapping of transcriptome and proteome dynamics during polarization of human iPSC-derived neurons
Cited by: 11
Author(s): Feline W Lindhout, Robbelien Kooistra, Sybren Portegies, Lotte J Herstel, Riccardo Stucchi, L. Basten Snoek, AF Maarten Altelaar, Harold D. MacGillavry, Corette J. Wierenga, Casper C. Hoogenraad
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-018-34614-1

Genome-wide Identification of Jatropha curcas MAPK, MAPKK, and MAPKKK Gene Families and Their Expression Profile Under Cold Stress
Cited by: 17
Author(s): Haibo Wang, Ming Gong, Junyun Guo, Hu Xiu, Yong Gao, Chao Liu, Dong-Qin Dai, Lizhou Tang
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-37565-9

Environmental filtering of bacterial functional diversity along an aridity gradient
Cited by: 14
Author(s): Huacan Song, Yu Shi, Teng Yang, Haiyan Chu, Jin‐Sheng He, Hyoki Kim, Piotr G. Jabłoński, Jonathan M. Adams
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-38186-y

Human macrophages survive and adopt activated genotypes in living zebrafish
Cited by: 18
Author(s): Colin D. Paul, Alexus Devine, Kevin Bishop, Qing Xu, William J. Wulftange, Hannah A. Burr, Kathryn M. Daly, Chaunte Lewis, Daniel S. Green, Jack R. Staunton, Swati Choksi, Zheng-gang Liu, Kandice Tanner
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0186040

De novo transcriptome sequencing of Isaria cateniannulata and comparative analysis of gene expression in response to heat and cold stresses
Cited by: 9
Author(s): Wang Ding-feng, Liangde Li, Guojun Wu, Liette Vasseur, Guang Yang, Pengrong Huang
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.54868

Pattern regulation in a regenerating jellyfish
Cited by: 28
Author(s): Chiara Sinigaglia, Sophie Péron, Jeanne Eichelbrenner, Sandra Chevalier, Julia Steger, Carine Barreau, Evelyn Houliston, Lucas Leclère
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-43025-9

Fungal Elevational Rapoport pattern from a High Mountain in Japan
Cited by: 29
Author(s): Matthew Chidozie Ogwu, Koichi Takahashi, Ke Dong, Huacan Song, Itumeleng Moroenyane, Bruce Waldman, Jonathan M. Adams
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2018.00264

Panax notoginseng Root Cell Death Caused by the Autotoxic Ginsenoside Rg1 Is Due to Over-Accumulation of ROS, as Revealed by Transcriptomic and Cellular Approaches
Cited by: 30
Author(s): Min Yang, Youcong Chuan, Changhong Guo, Jingjing Liao, Yanguo Xu, Xinyue Mei, Yixiang Liu, Huichuan Huang, Xiahong He, Shusheng Zhu
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2019.01289

Transcription Analysis of the Stress and Immune Response Genes to Temperature Stress in Ostrinia furnacalis
Cited by: 26
Author(s): Kangkang Chen, Tai Tang, Qisheng Song, Zhenying Wang, Kanglai He, Xu Liu, Jiahui Song, Libao Wang, Ye Yang, Chao Feng
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-47332-z

Roux-Y Gastric Bypass and Sleeve Gastrectomy directly change gut microbiota composition independent of surgery type
Cited by: 53
Author(s): Fernanda L. Paganelli, Misha D. P. Luyer, C. Marijn Hazelbag, Hae‐Won Uh, Malbert R. C. Rogers, Danielle Adriaans, Roos-Marijn Berbers, Antoni P. A. Hendrickx, Marco C. Viveen, James Groot, Marc J. M. Bonten, Ad C. Fluit, Rob J. L. Willems, Helen L. Leavis
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0165206

Key Microbiota Identification Using Functional Gene Analysis during Pepper (Piper nigrum L.) Peeling
Cited by: 0
Author(s): Jiachao Zhang, Qisong Hu, Chang Xu, Sixin Liu, Congfa Li
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-019-47950-7

The large repertoire of conifer NLR resistance genes includes drought responsive and highly diversified RNLs
Cited by: 42
Author(s): Cyril Van Ghelder, Gérard Parent, Philippe Rigault, Julien Prunier, Isabelle Giguère, S. Caron, Juliana Stival Sena, Annie Deslauriers, Jean Bousquet, Daniel Esmenjaud, John J. MacKay
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-48904-9

Enhanced dechlorination and biodegradation of 2-chloroaniline by a 2-aminoanthraquinone-graphene oxide composite under anaerobic conditions
Cited by: 5
Author(s): Hong Lü, Tiantian Zhang, Yang Zhou, Jiti Zhou, Jing Wang, Xiaolei Wang
Software Mentions: 2
Published: almost 7 years ago

10.3389/fphys.2021.672099

Genome-Wide Transcriptional Responses of Marine Nematode Litoditis marina to Hyposaline and Hypersaline Stresses
Cited by: 7
Author(s): Yusu Xie, Peng‐Chi Zhang, Liusuo Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2018.00532

Effects of Acute Aerobic Exercise on Rats Serum Extracellular Vesicles Diameter, Concentration and Small RNAs Content
Cited by: 62
Author(s): Getúlio Pereira de Oliveira Júnior, William F. Porto, Cintia Palu, Lydyane Menezes Pereira, Bernardo A. Petriz, Jeeser Alves de Almeida, Juliane Cançado Viana, Nezio N. A. Filho, Octávio Luiz Franco, Rinaldo Wellerson Pereira
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-019-55869-2

Multi-omics analysis of multiple missions to space reveal a theme of lipid dysregulation in mouse liver
Cited by: 43
Author(s): Afshin Beheshti, Kaushik Chakravarty, Homer Fogle, Hossein Fazelinia, Willian A. da Silveira, Valery Boyko, San-Huei Lai Polo, Amanda Saravia-Butler, Gary Hardiman, Deanne Taylor, Jonathan M. Galazka, Sylvain V. Costes
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-56367-1

Characterization of a five-microRNA signature as a prognostic biomarker for esophageal squamous cell carcinoma
Cited by: 13
Author(s): Jun Yu, Ming Zhu, Min Lv, Xiaoliu Wu, Xiaomei Zhang, Yuanying Zhang, Jintian Li, Qin Zhang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-56290-5

Fungal and bacterial diversity of Svalbard subglacial ice
Cited by: 44
Author(s): Laura Perini, Cene Gostinčar, Nina Gunde‐Cimerman
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-57182-4

Metabolomic networks and pathways associated with feed efficiency and related-traits in Duroc and Landrace pigs
Cited by: 23
Author(s): Victor Adriano Okstoft Carmelo, Priyanka Banerjee, Wellison J. S. Diniz, Haja N. Kadarmideen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-55013-0

Fibroblasts in urothelial bladder cancer define stroma phenotypes that are associated with clinical outcome
Cited by: 36
Author(s): Artur Mezheyeuski, Ulrika Segersten, Lina Leiss, Per‐Uno Malmström, Jiřı́ Hatina, Arne Östman, Carina Strell
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.66192

Single-cell analysis of mosquito hemocytes identifies signatures of immune cell subtypes and cell differentiation
Cited by: 25
Author(s): Hyeogsun Kwon, Mubasher Mohammed, Oscar Franzén, Johan Ankarklev, Ryan C. Smith
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-58163-8

Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes
Cited by: 46
Author(s): Chandni Talwar, Shekhar Nagar, Roshan Kumar, Joy Scaria, Rup Lal, Ram Krishan Negi
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0198404

Investigation of lignocellulolytic enzymes during different growth phases of Ganoderma lucidum strain G0119 using genomic, transcriptomic and secretomic analyses
Cited by: 23
Author(s): Shuai Zhou, Jingsong Zhang, Fuying Ma, Chuanhong Tang, Qingjiu Tang, Xiaoyu Zhang
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-24266-6

Duplication and diversification of lectin receptor-like kinases (LecRLK) genes in soybean
Cited by: 26
Author(s): Pingli Liu, Yuan Huang, Peng-Hao Shi, Meng Yu, Jianbo Xie, Lulu Xie
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-15994-2

Metabolic regulatory oscillations in intertidal green seaweed Ulva lactuca against tidal cycles
Cited by: 12
Author(s): Vishal Gupta, Hemant R. Kushwaha
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2020.00256

From Chloroplast Biogenesis to Chlorophyll Accumulation: The Interplay of Light and Hormones on Gene Expression in Camellia sinensis cv. Shuchazao Leaves
Cited by: 46
Author(s): Linlin Liu, Ning Lin, Xuyang Liu, Shu Hua Yang, Wei Wang, Xiaochun Wan
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2018.01071

Terpenoid Emissions of Two Mediterranean Woody Species in Response to Drought Stress
Cited by: 30
Author(s): Simon Haberstroh, Jürgen Kreuzwieser, Raquel Lobo‐do‐Vale, María C. Caldeira, Maren Dubbert, Christiane Werner
Software Mentions: 1
Published: about 8 years ago

10.3389/fcimb.2018.00005

Identification and Characterization of Blood and Neutrophil-Associated Microbiomes in Patients with Severe Acute Pancreatitis Using Next-Generation Sequencing
Cited by: 59
Author(s): Qiurong Li, Chenyang Wang, Chunbo Tang, Xiuhe Zhao, Qi He, Jieshou Li
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0213676

Carbohydrate intake attenuates post-exercise plasma levels of cytochrome P450-generated oxylipins
Cited by: 27
Author(s): David C. Nieman, Nicholas D. Gillitt, Guan-Yuan Chen, Qibin Zhang, Camila A. Sakaguchi, Ella H. Stephan
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2018.00879

Genome-Wide Identification and Characterization of Four Gene Families Putatively Involved in Cadmium Uptake, Translocation and Sequestration in Mulberry
Cited by: 35
Author(s): Wei Fan, Changying Liu, Boning Cao, Meiling Qin, Dan Long, Xiang Zhang, Aichun Zhao
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-28220-4

Supraphysiological Levels of Oxygen Exposure During the Neonatal Period Impairs Signaling Pathways Required for Learning and Memory
Cited by: 9
Author(s): Manimaran Ramani, Ranjit Kumar, Brian Halloran, Charitharth Vivek Lal, Namasivayam Ambalavanan, Lori L. McMahon
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2019.00461

A Network-Guided Genetic Approach to Identify Novel Regulators of Adventitious Root Formation in Arabidopsis thaliana
Cited by: 14
Author(s): Sergio Ibáñez, Helena Ruiz-Cano, María Á. Fernández, Ana Belén Sánchez-García, Joan Villanova, José Luis Micol, José Manuel Pérez-Pérez
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0188838

Virulence genes and subclone status as markers of experimental virulence in a murine sepsis model among Escherichia coli sequence type 131 clinical isolates from Spain
Cited by: 7
Author(s): Irene Merino, Stephen Porter, Brian Johnston, Connie Clabots, Evelyn Shaw, Juan Pablo Horcajada, Rafael Cantón, Patrícia Ruíz-Garbajosa, James R. Johnson
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2020.02063

Excessive Neutrophils and Neutrophil Extracellular Traps in COVID-19
Cited by: 184
Author(s): Jun Wang, Qian Li, Yongmei Yin, Yingying Zhang, Yingying Cao, Xiao Lin, Lihua Huang, Daniel Hoffmann, Mengji Lu, Yuanwang Qiu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2019.03055

Avian Pathogenic Escherichia coli (APEC) Strain-Dependent Immunomodulation of Respiratory Granulocytes and Mononuclear Phagocytes in CSF1R-Reporter Transgenic Chickens
Cited by: 33
Author(s): Andreas Alber, Katrina M. Morris, Karen Bryson, Kate Sutton, Melissa S. Monson, Cosmin Chintoan-Uta, Dominika Borowska, Susan J. Lamont, Catherine Schouler, Pete Kaiser, Mark P. Stevens, Lonneke Vervelde
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2016.01897

Characterization and Comparative Expression Profiling of Browning Response in Medinilla formosana after Cutting
Cited by: 7
Author(s): Wang Yan, Yiting Wang, Kunfeng Li, Xijiao Song, Jianping Chen
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-07570-5

Chronic low-level expression of HIV-1 Tat promotes a neurodegenerative phenotype with aging
Cited by: 65
Author(s): Alex M. Dickens, Seung Wan Yoo, Alfred C. Chin, Jiadi Xu, Tory P. Johnson, Amanda L. Trout, Kurt F. Hauser, Norman J. Haughey
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2020.00039

Transcriptional and Post-Transcriptional Regulation and Transcriptional Memory of Chromatin Regulators in Response to Low Temperature
Cited by: 23
Author(s): Kora Vyse, Léa Faivre, Melissa Romich, Majken Pagter, Daniel Schubert, Dirk K. Hincha, Ellen Zuther
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-34183-3

The biological role of N-acyl-homoserine lactone-based quorum sensing (QS) in EPS production and microbial community assembly during anaerobic granulation process
Cited by: 42
Author(s): Haijun Ma, Sijia Ma, Haidong Hu, Lili Ding, Hongqiang Ren
Software Mentions: 1
Published: almost 8 years ago

10.3390/cancers10090317

Transcriptome Signatures of Canine Mammary Gland Tumors and Its Comparison to Human Breast Cancers
Cited by: 18
Author(s): Kanghoon Lee, Hyoung-Min Park, Keun Hong Son, Teo Jeon Shin, Je‐Yoel Cho
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-35058-3

Correlation between genomic index lesions and mpMRI and 68Ga-PSMA-PET/CT imaging features in primary prostate cancer
Cited by: 26
Author(s): Claudia Kesch, Jan Philipp Radtke, Axel Wintsche, Manuel Wiesenfarth, Mariska Luttje, Claudia Gasch, Svenja Dieffenbacher, Carine Pecqueux, Doğu Teber, Gencay Hatiboglu, Joanne Nyarangi‐Dix, Tobias Simpfendörfer, Gita Schönberg, Antonia Dimitrakopoulou-Strauß, Martin T. Freitag, Anette Duensing, Carsten Grüllich, Dirk Jäger, Michael Goetz, Niels Grabe, Michal R. Schweiger, Sascha Pahernik, Sven Perner, Esther Herpel, Wilfried Roth, Kathrin Wieczorek, Klaus H. Maier‐Hein, Jürgen Debus, Uwe Haberkorn, Frederik L. Giesel, Joerg Galle, Boris Hadaschik, Heinz–Peter Schlemmer, Markus Hohenfellner, David Bonekamp, Holger Sültmann, Stefan Duensing
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-35403-6

In-depth validation of total HIV-1 DNA assays for quantification of various HIV-1 subtypes
Cited by: 26
Author(s): Sofie Rutsaert, Ward De Spiegelaere, Clarissa Van Hecke, Marie‐Angélique De Scheerder, Maja Kiselinova, Karen Vervisch, Wim Trypsteen, Linos Vandekerckhove
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-35625-8

Genome-wide identification and characterization of CKIN/SnRK gene family in Chlamydomonas reinhardtii
Cited by: 31
Author(s): Francisco Colina, Joana Amaral, María Teresa Doménech Carbó, Glória Pinto, Amadeu M.V.M. Soares, María Jesús Cañal, Luís Valledor
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1004860

Enhanced Longevity by Ibuprofen, Conserved in Multiple Species, Occurs in Yeast through Inhibition of Tryptophan Import
Cited by: 77
Author(s): Chi He, Scott Tsuchiyama, Quynh T. Nguyen, Ekaterina Plyusnina, Samuel R. Terrill, Sarah Sahibzada, Bhumil Patel, Alena R. Faulkner, Mikhail Shaposhnikov, Ruilin Tian, Mitsuhiro Tsuchiya, Matt Kaeberlein, Alexey Moskalev, Brian K. Kennedy, Michael Polymenis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1006929

Comprehensive analysis of nucleocytoplasmic dynamics of mRNA in Drosophila cells
Cited by: 21
Author(s): Tao Chen, Bas van Steensel
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2020.578086

A Practical Protocol for a Comprehensive Evaluation of Sulfur Fumigation of Trichosanthis Radix Based on Both Non-Targeted and Widely Targeted Metabolomics
Cited by: 7
Author(s): Chuan-Zhi Kang, Chaogeng Lv, Jian Yang, Liping Kang, Wuqiang Ma, Wenjin Zhang, Sheng Wang, Tielin Wang, Jiahui Sun, Yang Ge, Luqi Huang, Lan-Ping Guo
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2018.00279

Population Genetic Diversity and Clustering Analysis for Chinese Dongxiang Group With 30 Autosomal InDel Loci Simultaneously Analyzed
Cited by: 16
Author(s): Bofeng Zhu, Qiong Lan, Yuxin Guo, Ting Xie, Yingying Fang, Xiaoye Jin, Wei Cui, Chong Chen, Yang Zhou, Yong Li
Software Mentions: 1
Published: about 8 years ago

Projects: cran: pheatmap

Science Score: 75/100

Penalties:

Papers Mentioning pheatmap 2,572