Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.3389/fimmu.2019.00870
The Axial Organ and the Pharynx Are Sites of Hematopoiesis in the Sea Urchin
Cited by: 23
Author(s): Preethi Golconda, Katherine M. Buckley, Caroline R. Reynolds, Jennifer P. Romanello, L. Courtney Smith
Software Mentions: 2
Published: over 5 years ago
10.3389/fcell.2021.736994
Microbiomes and Resistomes in Biopsy Tissue and Intestinal Lavage Fluid of Colorectal Cancer
Cited by: 8
Author(s): Yumeng Yuan, Yihuan Chen, Fen Yao, Mi Zeng, Qingdong Xie, Muhammad Shafiq, Sohail M. Noman, Xiaoyang Jiao
Software Mentions: 2
Published: about 3 years ago
10.3389/fcell.2021.726323
Tumor Cell-Derived Exosomal Circ-0072088 Suppresses Migration and Invasion of Hepatic Carcinoma Cells Through Regulating MMP-16
Cited by: 20
Author(s): Ye Lin, Zehao Zheng, Jianxi Wang, Zhen Zhao, Tianyi Peng
Software Mentions: 2
Published: about 3 years ago
10.3389/fcell.2021.653798
Whole Transcriptome Analysis Reveals a Potential Regulatory Mechanism of LncRNA-FNIP2/miR-24-3p/FNIP2 Axis in Chicken Adipogenesis
Cited by: 13
Author(s): Lingling Guo, Xiaohuan Chao, Weiling Huang, Zhenhui Li, Kang Luan, Mao Ye, Siyu Zhang, Yijie Liu, Hongmei Li, Wen Luo, Qinghua Nie, Xiquan Zhang, Qianyi Luo
Software Mentions: 2
Published: over 3 years ago
10.3389/fbioe.2021.701039
Identification of Key mRNAs as Prediction Models for Early Metastasis of Pancreatic Cancer Based on LASSO
Cited by: 7
Author(s): Ke Xue, Huilin Zheng, Xiaowen Qian, Zheng Chen, Yangjun Gu, Zhenhua Hu, Lei Zhang, Jian Wan
Software Mentions: 2
Published: over 3 years ago
10.3389/fbioe.2021.575724
Effects of Banana Resistant Starch on the Biochemical Indexes and Intestinal Flora of Obese Rats Induced by a High-Fat Diet and Their Correlation Analysis
Cited by: 24
Author(s): Jinfeng Fu, Yuting Wang, Simin Tan, Juan Wang
Software Mentions: 2
Published: almost 4 years ago
10.1002/fsn3.2229
Determination of volatile organic compounds by HS‐GC‐IMS to detect different stages of <i>Aspergillus flavus</i> infection in Xiang Ling walnut
Cited by: 6
Author(s): Shan Wang, Haizhen Mo, Dan Xu, Huiling Hu, Liangbin Hu, Liang Shuai, Hongbo Li
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2020.00347
Bacterial Community Selection of Russula griseocarnosa Mycosphere Soil
Cited by: 9
Author(s): Fei Yu, Jiankun Liang, Jie Song, Shengkun Wang, Junkun Lu
Software Mentions: 2
Published: over 4 years ago
10.1002/2211-5463.12228
Identification of genes associated with histologic tumor grade of esophageal squamous cell carcinoma
Cited by: 10
Author(s): Jiaqiang Xing, Cuicui Liu
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2019.03104
Genomic Analysis of Putative Virulence Factors Affecting Cytotoxicity of Cronobacter
Cited by: 8
Author(s): Jinghua Cui, Jinrui Hu, Xin Du, Chao Yan, Guanhua Xue, Shaoli Li, Zhigang Cui, Hua Huang, Jing Yuan
Software Mentions: 2
Published: almost 5 years ago
10.1002/2211-5463.12952
miRNA profiling of primate cervicovaginal lavage and extracellular vesicles reveals miR‐186‐5p as a potential antiretroviral factor in macrophages
Cited by: 8
Author(s): Zezhou Zhao, Dillon C. Muth, Kathleen Mulka, Zhaohao Liao, Bonita H. Powell, Grace Hancock, Kelly A. Metcalf Pate, Kenneth W. Witwer
Software Mentions: 2
Published: about 4 years ago
10.3389/fmicb.2018.00126
Genome-Wide Identification and Classification of Soybean C2H2 Zinc Finger Proteins and Their Expression Analysis in Legume-Rhizobium Symbiosis
Cited by: 35
Author(s): Songli Yuan, Xiangyong Li, Rong Li, Lei Wang, Chanjuan Zhang, Limiao Chen, Qingnan Hao, Xiaojuan Zhang, Haifeng Chen, Shan Zhang, Zengling Yang, Shuilian Chen, Dandan Qiu, Danxia Ke, Xinan Zhou
Software Mentions: 2
Published: almost 7 years ago
10.1002/2211-5463.13167
Identification of crucial noncoding RNAs and mRNAs in hypertrophic scars via RNA sequencing
Cited by: 6
Author(s): Xiaodong Li, Zeliang He, Julei Zhang, Yan Han
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2018.01274
5-Aminosalicylic Acid Alters the Gut Bacterial Microbiota in Patients With Ulcerative Colitis
Cited by: 89
Author(s): Jianming Xu, Ning Chen, Zhe Wu, Yang Song, Yifan Zhang, Na Wu, Feng Zhang, Xinhua Ren, Yulan Liu
Software Mentions: 2
Published: over 6 years ago
10.1002/advs.202003164
Temporarily Epigenetic Repression in Bergmann Glia Regulates the Migration of Granule Cells
Cited by: 2
Author(s): Shaoxuan Chen, Kunkun Zhang, Boxin Zhang, Mengyun Jiang, Xue Zhang, Yi Guo, Yingying Yu, Tianyu Qin, Hongda Li, Qiang Chen, Zhiyu Cai, Site Luo, Yi Huang, Haixia Jin, Wei Mo
Software Mentions: 2
Published: over 3 years ago
10.1111/eva.12887
The fine‐scale genetic structure and selection signals of Chinese indigenous pigs
Cited by: 25
Author(s): Min Huang, Bin Yang, Hao Chen, Hui Zhang, Zhongping Wu, Huashui Ai, Jun Ren, Lusheng Huang
Software Mentions: 2
Published: about 5 years ago
10.1155/2021/9863714
Based on Network Pharmacology and RNA Sequencing Techniques to Explore the Molecular Mechanism of Huatan Jiangzhuo Decoction for Treating Hyperlipidemia
Cited by: 1
Author(s): Xiaowen Zhou, Zhenqian Yan, Yaxin Wang, Qi Ren, Xiaoqi Liu, Ge Fang, Bin Wang, Xiantao Li
Software Mentions: 2
Published: over 3 years ago
10.1155/2019/6976394
The Chinese Herbal Formula Shenzhu Tiaopi Granule Results in Metabolic Improvement in Type 2 Diabetic Rats by Modulating the Gut Microbiota
Cited by: 16
Author(s): Jindong Zhao, Yan Li, Min Sun, Ling Xin, Tianming Wang, Liangbing Wei, Chanjuan Yu, Mengmeng Liu, Yuan Ni, Ruimin Lu, Taotao Bao, Lu Zhang, Yuanyuan Wu, Zhaohui Fang
Software Mentions: 2
Published: over 5 years ago
10.1186/s12864-016-2778-z
Multiple adaptive routes of Salmonella enterica Typhimurium to biocide and antibiotic exposure
Cited by: 36
Author(s): Tânia Curião, Emmanuela Marchi, Denis Grandgirard, Ricardo León‐Sampedro, Carlo Viti, Stephen L. Leib, Fernando Baquero, Marco R. Oggioni, José Luis Martínez, Teresa M. Coque
Software Mentions: 2
Published: over 8 years ago
10.1186/s40001-014-0052-x
RETRACTED ARTICLE: Ranking candidate genes of esophageal squamous cell carcinomas based on differentially expressed genes and the topological properties of the co-expression network
Cited by: 3
Author(s): Yi Shen, Jicheng Tantai, Heng Zhao
Software Mentions: 2
Published: about 10 years ago
10.3389/fmicb.2017.00484
Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China
Cited by: 21
Author(s): Jing Li, Qiangchuan Hou, Jiachao Zhang, Haiyan Xu, Zhihong Sun, Bilige Menghe, Heping Zhang
Software Mentions: 2
Published: over 7 years ago
10.7150/ijms.60261
The underlying molecular mechanism and drugs for treatment in adrenal cortical carcinoma
Cited by: 4
Author(s): Chengquan Ma, Jian Xiong, Hao Su, Hongjun Li
Software Mentions: 2
Published: almost 4 years ago
10.3389/fmicb.2019.02629
Transcriptomic Profile and Sexual Reproduction-Relevant Genes of Alexandrium minutum in Response to Nutritional Deficiency
Cited by: 12
Author(s): Fan Qiang Meng, Jun Song, Jin Zhou, Zhong Hua Cai
Software Mentions: 2
Published: about 5 years ago
10.1002/ece3.7658
Environmental DNA metabarcoding primers for freshwater fish detection and quantification: In silico and in tanks
Cited by: 17
Author(s): Lu Shu, Arne Ludwig, Zuogang Peng
Software Mentions: 2
Published: over 3 years ago
10.15252/emmm.201911908
Characterization of circulating breast cancer cells with tumorigenic and metastatic capacity
Cited by: 69
Author(s): Claudia Koch, Andra Kuske, Simon A. Joosse, Gökhan Yiğit, George Sflomos, Sonja Thaler, Daniel J Smit, Stefan Werner, Kerstin Borgmann, Sebastian Gärtner, Parinaz Mossahebi Mohammadi, Laura Battista, Laure Cayrefourcq, Janine Altmüller, Gabriela Salinas-Riester, Kaamini Raithatha, Arne Zibat, Y. Goy, Leonie Ott, Kai Bartkowiak, Tuan Zea Tan, Qing Zhou, Michael R. Speicher, Volkmar Müller, Tobias M. Gorges, Manfred Jücker, Jean Paul Thiery, Cathrin Brisken, Sabine Riethdorf, Catherine Alix‐Panabières, Klaus Pantel
Software Mentions: 2
Published: over 4 years ago
10.1186/s13550-020-00728-9
18F-Fluciclovine PET metabolic imaging reveals prostate cancer tumour heterogeneity associated with disease resistance to androgen deprivation therapy
Cited by: 11
Author(s): Gaurav Malviya, Rachana Patel, Mark J. Salji, Rafael S. Martinez, Peter Repiščák, Ernest Mui, Sue Champion, Agata Mrowinska, Emma Johnson, Maha AlRasheedi, Sally L. Pimlott, David Y. Lewis, Hing Y. Leung
Software Mentions: 2
Published: about 4 years ago
10.1242/dmm.033316
Impaired β-cell glucokinase as an underlying mechanism in diet-induced diabetes
Cited by: 17
Author(s): Brian Lu, Kiran Kurmi, Miguel Munoz-Gomez, Egon J. Jacobus, Jason M. Tonne, Kuntol Rakshit, Taro Hitosugi, Yogish C. Kudva, Aleksey V. Matveyenko, Yasuhiro Ikeda
Software Mentions: 2
Published: over 6 years ago
10.1038/s42003-021-01901-z
Inside-out chicken enteroids with leukocyte component as a model to study host–pathogen interactions
Cited by: 38
Author(s): Tessa Nash, Katrina M. Morris, Neil A. Mabbott, Lonneke Vervelde
Software Mentions: 2
Published: over 3 years ago
10.3389/fnmol.2019.00196
Differential Expression Profiles and Functional Prediction of Circular RNAs and Long Non-coding RNAs in the Hippocampus of Nrf2-Knockout Mice
Cited by: 15
Author(s): Runjiao Zhang, Yan Li, Qing Liu, Yanjing Gao, Juan Du, Jun Ma, Shao-Guang Sun, Lei Wang
Software Mentions: 2
Published: over 5 years ago
10.1038/s42003-019-0716-8
NHC-gold compounds mediate immune suppression through induction of AHR-TGFβ1 signalling in vitro and in scurfy mice
Cited by: 14
Author(s): Xinlai Cheng, Stefanie Haeberle, Iart Luca Shytaj, Rodrigo A. Gama-Brambila, Jannick Theobald, Shahrouz Ghafoory, Jessica Wölker, Uttara Basu, Claudia Schmidt, Annika Timm, Katerina Taškova, Andrea S. Bauer, Jörg D. Hoheisel, Nikolaos Tsopoulidis, Oliver T. Fackler, Andrea Savarino, Miguel A. Andrade‐Navarro, Ingo Ott, Marina Lušić, Eva Hadaschik, Stefan Wölfl
Software Mentions: 2
Published: almost 5 years ago
10.1038/s42003-020-1082-2
A smart polymer for sequence-selective binding, pulldown, and release of DNA targets
Cited by: 9
Author(s): Elisha Krieg, Krishna Gupta, Andreas Dahl, Mathias Lesche, Susanne Boye, Albena Lederer, William M. Shih
Software Mentions: 2
Published: over 4 years ago
10.1038/s42003-020-0964-7
Omics-wide quantitative B-cell infiltration analyses identify GPR18 for human cancer prognosis with superiority over CD20
Cited by: 13
Author(s): Yuchen Liu, Li Wang, Kwok Wai Lo, Vivian Wai Yan Lui
Software Mentions: 2
Published: over 4 years ago
10.1038/s42003-021-02676-z
High-throughput single-cell transcriptomics reveals the female germline differentiation trajectory in Arabidopsis thaliana
Cited by: 14
Author(s): Zongliu Hou, Qing Liu, Man Zhang, Lihua Zhao, Xingyue Jin, Liping Liu, Zhenxia Su, Hanyang Cai, Yuan Qin
Software Mentions: 2
Published: about 3 years ago
10.3389/fneur.2020.580997
Electroacupuncture Alleviates Mechanical Allodynia of a Rat Model of CRPS-I and Modulates Gene Expression Profiles in Dorsal Root Ganglia
Cited by: 7
Author(s): Jie Wang, Xiaoli Zheng, Boyu Liu, Chengyu Yin, Ruixiang Chen, Xiaojie Li, Yuanyuan Li, Huimin Nie, Danyi Zeng, Xiaofen He, Yongliang Jiang, Jianqiao Fang
Software Mentions: 2
Published: about 4 years ago
10.1186/s13148-020-00940-3
Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
Cited by: 10
Author(s): Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qing
Software Mentions: 2
Published: about 4 years ago
10.3390/cells10020251
Osteoarthritic Subchondral Bone Release Exosomes That Promote Cartilage Degeneration
Cited by: 26
Author(s): Xiaoxin Wu, Ross Crawford, Yin Xiao, Xinzhan Mao, Indira Prasadam
Software Mentions: 2
Published: almost 4 years ago
10.3390/cells10061410
Regulatory miRNA–mRNA Networks in Parkinson’s Disease
Cited by: 10
Author(s): Bruno Lopes Santos‐Lobato, Amanda Ferreira Vidal, Ândrea Ribeiro-dos-Santos
Software Mentions: 2
Published: over 3 years ago
10.3390/cells9051078
Characterization of Endoplasmic Reticulum (ER) in Human Pluripotent Stem Cells Revealed Increased Susceptibility to Cell Death upon ER Stress
Cited by: 9
Author(s): Tae Won Ha, Ji Hun Jeong, HyeonSeok Shin, Hyun Kyu Kim, Jeong Suk Im, Byung Hoo Song, Jacob Hanna, Jae Sang Oh, Dong Hun Woo, Jaeseok Han, Man Ryul Lee
Software Mentions: 2
Published: over 4 years ago
10.1016/j.celrep.2019.12.078
Probiotic Bacillus subtilis Protects against α-Synuclein Aggregation in C. elegans
Cited by: 98
Author(s): María Eugenia Goya, Feng Xue, Cristina Sampedro-Torres-Quevedo, Sofia Arnaouteli, Lourdes Riquelme-Dominguez, Andrés Romanowski, Jack Brydon, Kathryn L. Ball, Nicola R. Stanley‐Wall, Maria Doitsidou
Software Mentions: 2
Published: almost 5 years ago
10.1016/j.celrep.2021.109230
Integrin intra-heterodimer affinity inversely correlates with integrin activatability
Cited by: 11
Author(s): Guangyu Sun, Emilie Guillon, Scott A. Holley
Software Mentions: 2
Published: over 3 years ago
10.1111/cpr.12634
Inferring immune‐associated signatures based on a co‐expression network in Guillain‐Barré syndrome
Cited by: 1
Author(s): Xiaoming Zhang, Huixue Zhang, Zhaojun Liu, Ruijuan Guan, Jianjian Wang, Xiaotong Kong, Lixia Chen, Chunrui Bo, Jie Li, Ming Bai, Xiaoyu Lu, Jia Shen, Lihua Wang, Mian Guo
Software Mentions: 2
Published: over 5 years ago
10.1016/j.cmet.2016.04.001
Mapping the Human Platelet Lipidome Reveals Cytosolic Phospholipase A2 as a Regulator of Mitochondrial Bioenergetics during Activation
Cited by: 149
Author(s): David A. Slatter, Maceler Aldrovandi, Anne E O’Connor, Stuart M. Allen, Christopher J. Brasher, Robert C. Murphy, Sven Mecklemann, Saranya Ravi, Victor Darley‐Usmar, Valerie Bridget O'Donnell
Software Mentions: 2
Published: over 8 years ago
10.1038/s41419-020-2666-y
ΔNp63α-induced DUSP4/GSK3β/SNAI1 pathway in epithelial cells drives endometrial fibrosis
Cited by: 24
Author(s): Guangfeng Zhao, Ruotian Li, Yun Cao, Minmin Song, Pengju Jiang, Qianwen Wu, Zhenhua Zhou, Hui Zhu, Huiyan Wang, Chenyan Dai, Dan Liú, Simin Yao, Haining Lv, Limin Wang, Jianwu Dai, Yan Zhou, Yali Hu
Software Mentions: 2
Published: over 4 years ago
10.1038/s41419-021-03863-w
Multilevel regulation of Wnt signaling by Zic2 in colon cancer due to mutation of β-catenin
Cited by: 5
Author(s): Zhengshui Xu, Jianbao Zheng, Zilu Chen, Jing Guo, Xiaopeng Li, Xingjie Wang, Chao Qu, Liyue Yuan, Cheng Chen, Xuejun Sun, Ji Hee Yu
Software Mentions: 2
Published: over 3 years ago
10.1038/s41419-019-1402-y
Subverted regulation of Nox1 NADPH oxidase-dependent oxidant generation by protein disulfide isomerase A1 in colon carcinoma cells with overactivated KRas
Cited by: 17
Author(s): Tiphany De Bessa, Alessandra Pagano, Ana Iochabel Soares Moretti, Percíllia Oliveira, Samir Andrade Mendonça, Hervé Kovacic, Francisco Rafael Martins Laurindo
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41419-021-03589-9
Non-canonical role of wild-type SEC23B in the cellular stress response pathway
Cited by: 3
Author(s): Lamis Yehia, Darren Liu, Shuai Fu, Pranav Iyer, Charis Eng
Software Mentions: 2
Published: over 3 years ago
10.1038/s41419-019-1522-4
Overexpression of microRNA-301b accelerates hippocampal microglia activation and cognitive impairment in mice with depressive-like behavior through the NF-κB signaling pathway
Cited by: 26
Author(s): Chao-Zhi Tang, Dongfang Zhang, Juntang Yang, Qinghui Liu, Yaru Wang, Wensheng Wang
Software Mentions: 2
Published: over 5 years ago
10.1155/2021/5536330
The Function and Prognostic Value of RNA-Binding Proteins in Colorectal Adenocarcinoma Were Analyzed Based on Bioinformatics of Smart Medical Big Data
Cited by: 1
Author(s): Haoran Zhao, Peng Wang, Haishi Liu, Yueyang Li, Qian Luo, Man Li, Yubao Zhang, Zengfu Song
Software Mentions: 2
Published: over 3 years ago
10.1038/s41419-021-03800-x
MFG-E8 regulated by miR-99b-5p protects against osteoarthritis by targeting chondrocyte senescence and macrophage reprogramming via the NF-κB pathway
Cited by: 26
Author(s): Yuheng Lu, Liangliang Liu, Jinhe Pan, Bingsheng Luo, Hua Zeng, Yan Shao, Hongbo Zhang, Hong Guan, Dong Guo, Chun Zeng, Rongkai Zhang, Xiaochun Bai, Haiyan Zhang, Daozhang Cai
Software Mentions: 2
Published: over 3 years ago
10.1038/s41419-018-0896-z
Somatic loss of WWOX is associated with TP53 perturbation in basal-like breast cancer
Cited by: 20
Author(s): Suhaib K. Abdeen, Uri Ben‐David, Aya Shweiki, Bella Maly, Rami I. Aqeilan
Software Mentions: 2
Published: over 6 years ago
10.1038/cddis.2017.398
Three-dimensional tumor cell growth stimulates autophagic flux and recapitulates chemotherapy resistance
Cited by: 40
Author(s): Corinna Bingel, E Koeneke, Johannes Ridinger, Annika Bittmann, Martin Sill, Heike Peterziel, Jagoda K. Wrobel, Inga Edeltraud Rettig, Till Milde, Uta Fernekorn, Frank Weise, Andreas Schober, Olaf Witt, Ina Oehme
Software Mentions: 2
Published: over 7 years ago
10.1038/s41419-019-2177-x
Vitamin D promotes the cisplatin sensitivity of oral squamous cell carcinoma by inhibiting LCN2-modulated NF-κB pathway activation through RPS3
Cited by: 46
Author(s): Zheng‐Ming Huang, Yin Zhang, Haigang Li, Yufeng Zhou, Qianyu Zhang, Rui Chen, Tingting Jin, Kaishun Hu, Shihao Li, Yan Wang, Wei‐liang Chen, Zhiquan Huang
Software Mentions: 2
Published: almost 5 years ago
10.3389/fonc.2020.556084
LINC01315 Impairs microRNA-211-Dependent DLG3 Downregulation to Inhibit the Development of Oral Squamous Cell Carcinoma
Cited by: 11
Author(s): Fu-Bo Chen, Peng Wu, Rong Zhou, Qixiang Yang, Xu Zhang, Raorao Wang, Shengcai Qi, Xi Yang
Software Mentions: 2
Published: about 4 years ago
10.1038/s41419-021-03816-3
Proteomics of extracellular vesicles in plasma reveals the characteristics and residual traces of COVID-19 patients without underlying diseases after 3 months of recovery
Cited by: 20
Author(s): Kaimin Mao, Qi Tan, Yanling Ma, Sufei Wang, Hua Zhong, Yuhan Liao, Qi Huang, Wenjing Xiao, Hui Xia, Xingyi Tan, Ping Luo, Jing Xu, Danling Long, Yang Jin
Software Mentions: 2
Published: over 3 years ago
10.1186/s13578-021-00665-7
Effects of low lead exposure on sperm quality and sperm DNA methylation in adult men
Cited by: 6
Author(s): Tiancheng Zhang, Yan Fei Ru, Bin Wu, Haiyan Dong, Chen Liang, Jing Zheng, Jianhui Li, Xin Wang, Zhikai Wang, Xuemei Wang, Xiaorong Shen, Jun Wu, Jun Qian, Maohua Miao, Yihua Gu, Huijuan Shi
Software Mentions: 2
Published: over 3 years ago
10.1186/s13578-020-00487-z
Significant transcriptomic changes are associated with differentiation of bone marrow-derived mesenchymal stem cells into neural progenitor-like cells in the presence of bFGF and EGF
Cited by: 19
Author(s): Amir Ali Khan, Tee Jong Huat, Abdullah Al Mutery, Ahmed T. El‐Serafi, Hassen Hadj Kacem, Sallam Hasan Abdallah, Muhammed Faruque Reza, Jafri Malin Abdullah, Hasnan Jaafar
Software Mentions: 2
Published: about 4 years ago
10.3389/fonc.2021.668424
Selenite Induces Cell Cycle Arrest and Apoptosis via Reactive Oxygen Species-Dependent Inhibition of the AKT/mTOR Pathway in Thyroid Cancer
Cited by: 8
Author(s): Zhen Cheng, Shuang Yu, Weiman He, Jie Li, Tianyi Xu, Junyu Xue, Peijie Shi, Shuwei Chen, Yanbing Li, Shubin Hong, Haipeng Xiao
Software Mentions: 2
Published: over 3 years ago
10.3389/fonc.2021.664032
Expression and Prognostic Significance of PD-L2 in Diffuse Large B-Cell Lymphoma
Cited by: 5
Author(s): Qianhui Gu, Jing Li, Zhuolin Chen, Jie Zhang, Hui Shen, Xiaobing Miao, Zhe Ying, Xiaohong Xu, Song He
Software Mentions: 2
Published: over 3 years ago
10.1186/s13045-021-01045-x
The construction, expression, and enhanced anti-tumor activity of YM101: a bispecific antibody simultaneously targeting TGF-β and PD-L1
Cited by: 90
Author(s): Ming Yi, Jing Zhang, An‐Ping Li, Mengke Niu, Yongxiang Yan, Yanmei Jiao, Suxia Luo, Pengfei Zhou, Kongming Wu
Software Mentions: 2
Published: almost 4 years ago
10.3389/fonc.2019.01246
Silencing of Long Non-coding RNA SMAD5-AS1 Reverses Epithelial Mesenchymal Transition in Nasopharyngeal Carcinoma via microRNA-195-Dependent Inhibition of SMAD5
Cited by: 9
Author(s): Siwei Li, Bo Zhao, Haiying Zhao, Cui Shang, Man Zhang, Xiaofang Xiong, Jinjin Pu, Bo-Hua Kuang, Guo-Min Deng
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12967-021-02814-5
Gut microbiota accelerates cisplatin-induced acute liver injury associated with robust inflammation and oxidative stress in mice
Cited by: 31
Author(s): Shenhai Gong, Ying Feng, Yunong Zeng, Huanrui Zhang, Meiping Pan, Fangjie He, Rong Wu, Jingrui Chen, Jiuling Lu, Siyou Zhang, Songhua Yuan, Xia Chen
Software Mentions: 2
Published: over 3 years ago
10.3390/plants10040740
Taxonomic Revisiting and Phylogenetic Placement of Two Endangered Plant Species: Silene leucophylla Boiss. and Silene schimperiana Boiss. (Caryophyllaceae)
Cited by: 4
Author(s): Ahmed El-Banhawy, Iman H. Nour, Carmen Acedo, Ahmed Elkordy, Ahmed Faried, Widad S Al-Juhani, Ahmed M. H. Gawhari, Asmaa O. Olwey, Faten Y. Ellmouni
Software Mentions: 2
Published: over 3 years ago
10.1007/s00299-020-02520-4
Wheat PP2C-a10 regulates seed germination and drought tolerance in transgenic Arabidopsis
Cited by: 31
Author(s): Xiao‐Lan Yu, Jiapeng Han, Li Li, Qian Zhang, Guangxiao Yang, Guoqing He
Software Mentions: 2
Published: almost 5 years ago
10.3389/fonc.2020.541410
LINC00494 Promotes Ovarian Cancer Development and Progression by Modulating NFκB1 and FBXO32
Cited by: 6
Author(s): Shu Yang, He Zhang, Jinqiu Li, Yanhong Shan
Software Mentions: 2
Published: almost 4 years ago
10.14814/phy2.13794
TGF beta inhibits HGF, FGF7, and FGF10 expression in normal and IPF lung fibroblasts
Cited by: 16
Author(s): Kelly A. Correll, Karen E. Edeen, Elizabeth F. Redente, Rachel L. Zemans, Benjamin Edelman, Thomas Danhorn, Douglas Curran‐Everett, Amanda Mikels‐Vigdal, Robert J. Mason
Software Mentions: 2
Published: over 6 years ago
10.7717/peerj.11386
Prokaryotic communities from a lava tube cave in La Palma Island (Spain) are involved in the biogeochemical cycle of major elements
Cited by: 18
Author(s): Jose Luis Gonzalez-Pimentel, Tamara Martin-Pozas, Valme Jurado, Ana Z. Miller, Ana Teresa Caldeira, Octavio Fernandez-Lorenzo, Sergio Sánchez‐Moral, Cesáreo Sáiz‐Jiménez
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.9006
Identification and expression analysis of the DREB transcription factor family in pineapple (<i>Ananas comosus</i> (L.) Merr.)
Cited by: 18
Author(s): Mengnan Chai, Han Cheng, Mei Yan, S. V. G. N. Priyadarshani, Man Zhang, Qing-Yu He, Youmei Huang, Fangqian Chen, Liping Liu, Xuena Huang, Linyi Lai, Huihuang Chen, Hanyang Cai, Yuan Qin
Software Mentions: 2
Published: over 4 years ago
10.1186/s12864-021-07808-7
Population differentiated copy number variation of Bos taurus, Bos indicus and their African hybrids
Cited by: 11
Author(s): Jung Eun Jang, Kwondo Kim, Young Ho Lee, Heebal Kim
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.8670
Identification of hub genes and small-molecule compounds in medulloblastoma by integrated bioinformatic analyses
Cited by: 8
Author(s): Zhendong Liu, Ruotian Zhang, Zhenying Sun, Jiawei Yao, Penglei Yao, Xin Chen, Xinzhuang Wang, Ming Gao, Jinzhao Wan, Yiqun Du, Shen Zhao
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj.12075
Prediction of the mechanism of miRNAs in laryngeal squamous cell carcinoma based on the miRNA-mRNA regulatory network
Cited by: 1
Author(s): Jun Ma, Xiaodong Hu, Baoqiang Dai, Qiang Wang, Hongqin Wang
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.9353
Effects of supplementary feeding on the rumen morphology and bacterial diversity in lambs
Cited by: 14
Author(s): Feng Lv, Xiaojuan Wang, Xin Pang, Guohua Li
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj.10811
Characterization of the GRAS gene family reveals their contribution to the high adaptability of wheat
Cited by: 5
Author(s): Yanfeng Liu, Wei Wang
Software Mentions: 2
Published: almost 4 years ago
10.7717/peerj.7265
Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
Cited by: 43
Author(s): Gareth Trubl, Simon Roux, Natalie Solonenko, Yueh Fen Li, Benjamin Bolduc, Josué A. Rodríguez-Ramos, Emiley A. Eloe‐Fadrosh, V. I. Rich, Matthew B. Sullivan
Software Mentions: 2
Published: over 5 years ago
10.18632/aging.102149
The long noncoding RNA MIR210HG promotes tumor metastasis by acting as a ceRNA of miR-1226-3p to regulate mucin-1c expression in invasive breast cancer
Cited by: 50
Author(s): Xiaoyü Li, Liye Zhou, Hao Luo, Qi Zhu, Liang Zuo, Guyue Liu, Feng Chu, Jie Zhao, Yuanyuan Zhang, Xue Li
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.3881
Integration of lncRNA–miRNA–mRNA reveals novel insights into oviposition regulation in honey bees
Cited by: 37
Author(s): Xiao Chen, Ce Ma, Chao Chen, Qian Lü, Wei Shi, Zhiguang Liu, Huihua Wang, Haiyang Guo
Software Mentions: 2
Published: about 7 years ago
10.3390/ijerph16050683
Prevalence of Antibiotic Resistance Genes in Air-Conditioning Systems in Hospitals, Farms, and Residences
Cited by: 22
Author(s): Yaying Li, Hongkai Liao, Huaiying Yao
Software Mentions: 2
Published: almost 6 years ago
10.7717/peerj.8948
Response of organic carbon mineralization and bacterial communities to soft rock additions in sandy soils
Cited by: 11
Author(s): Zhen Guo, Jichang Han, Juan Li
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj.8779
Comparative proteogenomics profiling of non-small and small lung carcinoma cell lines using mass spectrometry
Cited by: 6
Author(s): Jingyu Wu, Hao Zou, Chen Ma, Pengfei Li, Liuyi Dang, Shisheng Sun
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj.11576
Dumpster diving for diatom plastid 16S rRNA genes
Cited by: 2
Author(s): Krista L Bonfantine, Stacey M. Trevathan‐Tackett, Ty G. Matthews, Ana Neckovic, Han Ming Gan
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.7152
Microbial community dynamics during aerobic granulation in a sequencing batch reactor (SBR)
Cited by: 5
Author(s): Fabiola Gómez-Basurto, Miguel Vital‐Jácome, Selene Gómez-Acata, Frédéric Thalasso, Marco Luna‐Guido, Luc Dendooven
Software Mentions: 2
Published: over 5 years ago
10.20411/pai.v4i1.270
The Microbiome of Temporal Arteries
Cited by: 15
Author(s): Gary S. Hoffman, Ted M. Getz, Roshan Padmanabhan, Alexandra Villa‐Forte, Alison Clifford, Pauline Funchain, Madhav Sankunny, Julian D. Perry, Alexander D. Blandford, Gregory S. Kosmorsky, Lisa D. Lystad, Leonard H. Calabrese, Charis Eng
Software Mentions: 2
Published: almost 6 years ago
10.3390/pathogens9110888
Genomic Features and Evolution of the Parapoxvirus during the Past Two Decades
Cited by: 4
Author(s): Xiaoting Yao, Ming Pang, Tianxing Wang, Xi Chen, Xidian Tang, Jianjun Chang, Dekun Chen, Wentao Ma
Software Mentions: 2
Published: about 4 years ago
10.1155/2019/6256179
Alterations in Surface Electromyography Are Associated with Subjective Masticatory Muscle Pain
Cited by: 15
Author(s): Davide Pietropaoli, Eleonora Ortu, Mario Giannoni, R Cattaneo, Alessandra Mummolo, Annalisa Monaco
Software Mentions: 2
Published: about 5 years ago
10.1186/s12864-019-5725-y
Expanding dynamics of the virulence-related gene variations in the toxigenic Vibrio cholerae serogroup O1
Cited by: 8
Author(s): Zhenpeng Li, Bo Pang, Duochun Wang, Jie Li, Jialiang Xu, Yujie Fang, Xin Lü, Biao Kan
Software Mentions: 2
Published: over 5 years ago
10.3389/fonc.2021.676124
Malignant Tumor Purity Reveals the Driven and Prognostic Role of CD3E in Low-Grade Glioma Microenvironment
Cited by: 10
Author(s): Xiuqin Lu, Chuanyu Li, Wenhao Xu, Yuanyuan Wu, Jian Wang, Shuxian Chen, Ye Zhang, Hao Huang, Haiyang Huang, Wangrui Liu
Software Mentions: 2
Published: about 3 years ago
10.3389/fonc.2021.659123
Long Non-Coding RNA LINC01410 Promoted Tumor Progression via the ErbB Signaling Pathway by Targeting STAT5 in Gallbladder Cancer
Cited by: 0
Author(s): Lili Lü, Shilong Zhang, Zhengqing Song, Weiqi Lu, Zhiming Wang, Yuhong Zhou
Software Mentions: 2
Published: over 3 years ago
10.1186/s12957-021-02137-1
Identification and validation of a miRNA-related expression signature for tumor mutational burden in colorectal cancer
Cited by: 9
Author(s): Li Xu, Qing Zheng
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12957-020-02026-z
Prognostic biomarkers related to breast cancer recurrence identified based on Logit model analysis
Cited by: 15
Author(s): Xiaoying Zhou, Chuanguang Xiao, Tong Han, Shusheng Qiu, Meng Wang, Jun Chen, Weike Sun, Liang Li, Lili Lin
Software Mentions: 2
Published: about 4 years ago
10.3389/fonc.2021.611081
STAM Prolongs Clear Cell Renal Cell Carcinoma Patients' Survival via Inhibiting Cell Growth and Invasion
Cited by: 2
Author(s): Tuo Deng, Zihao He, Xiaolu Duan, Danan Gu, Chao Cai, Wenqi Wu, Yongda Liu, Guohua Zeng
Software Mentions: 2
Published: over 3 years ago
10.1186/s12957-017-1242-0
Integrated network analysis to explore the key genes regulated by parathyroid hormone receptor 1 in osteosarcoma
Cited by: 10
Author(s): Dong-Hui Guan, Honglai Tian
Software Mentions: 2
Published: about 7 years ago
10.1186/s12957-017-1190-8
Special role of JUN in papillary thyroid carcinoma based on bioinformatics analysis
Cited by: 9
Author(s): Wenzheng Chen, Qingfeng Li, Yunxia Lv, Debin Xu, Wanzhi Chen, Jichun Yu
Software Mentions: 2
Published: over 7 years ago
10.3390/v10050232
Involvement of Pro-Inflammatory Macrophages in Liver Pathology of Pirital Virus-Infected Syrian Hamsters
Cited by: 3
Author(s): Corey L. Campbell, Aaron T. Phillips, Amber B. Rico, Amanda L. McGuire, Tawfik Aboellail, Sandra L. Quackenbush, Ken E. Olson, Tony Schountz
Software Mentions: 2
Published: over 6 years ago
10.3390/v9100271
Antiviral Properties of Chemical Inhibitors of Cellular Anti-Apoptotic Bcl-2 Proteins
Cited by: 37
Author(s): Daria Bulanova, Aleksandr Ianevski, А. Н. Бугай, Yevhen Akimov, Suvi Kuivanen, Henrik Paavilainen, Laura Kakkola, Jatin Nandania, Laura Turunen, Tiina Öhman, Hanna Ala-Hongisto, Hanna M Pesonen, Marika Kuisma, Anni Honkimaa, Emma Louise Walton, Valentyn Oksenych, Martina B. Lorey, Dmitry Guschin, Jungmin Shim, Jinhee Kim, Thoa Thi Than, So Young Chang, Veijo Hukkanen, Evgeny Kulesskiy, Varpu Marjomäki, Ilkka Julkunen, Tuula A. Nyman, Sampsa Matikainen, Jani Saarela, Famara Sané, Didier Hober, Gülşah Gabriel, Jef K. De Brabander, Miika Martikainen, Marc P. Windisch, Ji-Young Min, Roberto Bruzzone, Tero Aittokallio, Markus Vähä‐Koskela, Olli Vapalahti, Arto Pulk, Vidya Velagapudi, Denis E. Kainov
Software Mentions: 2
Published: about 7 years ago
10.1007/s10295-018-2059-8
Genomic and transcriptomic comparison of <i>Aspergillus oryzae</i> strains: a case study in soy sauce koji fermentation
Cited by: 30
Author(s): Yiyi Zhong, Xunyu Lu, Lei Xing, Shiu Woon Allen Ho, Hoi Shan Kwan
Software Mentions: 2
Published: over 6 years ago
10.1186/s12985-020-01420-z
Temporal changes in the vaginal microbiota in self-samples and its association with persistent HPV16 infection and CIN2+
Cited by: 12
Author(s): Malin Berggrund, Inger Gustavsson, Riina Aarnio, Julia Hedlund Lindberg, Karin Sanner, Ingrid Wikström, Stefan Enroth, Ignas Bunikis, Matts Olovsson, Ulf Gyllensten
Software Mentions: 2
Published: about 4 years ago
10.1186/s13567-021-00914-0
A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets
Cited by: 7
Author(s): Zhigang Zhang, Tianshu Zhai, Mingshuo Li, Kun Zhang, Jingrui Li, Zheng Xu, Chaonan Tian, Chen Rui, Jianhui Dong, En‐Min Zhou, Yuchen Nan, Chunyan Wu
Software Mentions: 2
Published: over 3 years ago
10.3389/fonc.2021.725988
Gene Expression Profiling for Differential Diagnosis of Liver Metastases: A Multicenter, Retrospective Cohort Study
Cited by: 3
Author(s): Qifeng Wang, Fen Li, Qingming Jiang, Yifeng Sun, Qiong Liao, Hong‐Wei An, Lili Li, Zhenyu Li, Lifang Fan, Fang Guo, Qinghua Xu, Yixin Wo, Wanli Ren, Junqiu Yue, Bin Meng, Weiping Liu, Xiaoyan Zhou
Software Mentions: 2
Published: about 3 years ago
10.3390/vaccines8020314
Search of Potential Vaccine Candidates against Trueperella pyogenes Infections through Proteomic and Bioinformatic Analysis
Cited by: 5
Author(s): Ángela Galán‐Relaño, Lídia Gómez-Gascón, Antonio Rodríguez-Franco, Inmaculada Luque, Belén Huerta, Carmen Tarradas, Manuel J. Rodríguez-Ortega
Software Mentions: 2
Published: over 4 years ago
10.3390/vaccines8020188
Proteomic and Bioinformatic Analysis of Streptococcus suis Human Isolates: Combined Prediction of Potential Vaccine Candidates
Cited by: 7
Author(s): Esther Prados de la Torre, Antonio Rodríguez-Franco, Manuel J. Rodríguez-Ortega
Software Mentions: 2
Published: over 4 years ago
10.3389/fonc.2021.685641
Global Analysis of Microbiota Signatures in Four Major Types of Gastrointestinal Cancer
Cited by: 13
Author(s): Jihan Wang, Yangyang Wang, Zhenzhen Li, Xiaoguang Gao, Dageng Huang
Software Mentions: 2
Published: over 3 years ago