cran: pheatmap | Projects | Ecosyste.ms: Papers

10.3389/fonc.2020.556084

LINC01315 Impairs microRNA-211-Dependent DLG3 Downregulation to Inhibit the Development of Oral Squamous Cell Carcinoma
Cited by: 11
Author(s): Fu-Bo Chen, Peng Wu, Rong Zhou, Qixiang Yang, Xu Zhang, Raorao Wang, Shengcai Qi, Xi Yang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-020-6515-2

Comprehensive profiling of circular RNA expressions reveals potential diagnostic and prognostic biomarkers in multiple myeloma
Cited by: 44
Author(s): Fan Zhou, Dongjiao Wang, Wei Wei, Haimin Chen, Haotian Shi, Nina Zhou, Lixia Wu, Rong Peng
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-020-02431-2

Genome-wide identification and functional characterization of cotton (Gossypium hirsutum) MAPKKK gene family in response to drought stress
Cited by: 22
Author(s): Jingbo Zhang, Xinpeng Wang, Ya-Chao Wang, Yi-Hao Chen, Jingwen Luo, Deng-Di Li, Xuebao Li
Software Mentions: 2
Published: over 6 years ago

10.1002/brb3.1319

Identification of key genes and upstream regulators in ischemic stroke
Cited by: 8
Author(s): Qian Zhang, Wenjie Chen, Siqia Chen, Shunxian Li, Dang Wei, Wenzhen He
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0228496

The distal intestinal microbiome of hybrids of Hainan black goats and Saanen goats
Cited by: 8
Author(s): Shuaiming Jiang, Dongxue Huo, Zhengkai You, Qingyun Peng, Chenchen Ma, Haibo Chang, Xiangguo Lin, Lu Wang, Jiachao Zhang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0169874

Spatial and Host-Related Variation in Prevalence and Population Density of Wheat Curl Mite (Aceria tosichella) Cryptic Genotypes in Agricultural Landscapes
Cited by: 22
Author(s): Anna Skoracka, Mariusz Lewandowski, B. G. Rector, Wiktoria Szydło, Lechosław Kuczyński
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2018.00264

Panax notoginseng Root Cell Death Caused by the Autotoxic Ginsenoside Rg1 Is Due to Over-Accumulation of ROS, as Revealed by Transcriptomic and Cellular Approaches
Cited by: 30
Author(s): Min Yang, Youcong Chuan, Changhong Guo, Jingjing Liao, Yanguo Xu, Xinyue Mei, Yixiang Liu, Huichuan Huang, Xiahong He, Shusheng Zhu
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0220374

Molecular identification of the phosphate transporter family 1 (PHT1) genes and their expression profiles in response to phosphorus deprivation and other abiotic stresses in Brassica napus
Cited by: 30
Author(s): Li Yu, Xue Wang, Hao Zhang, Sheliang Wang, Xiangsheng Ye, Lei Shi, Fangsen Xu, Guangda Ding
Software Mentions: 2
Published: about 7 years ago

10.1186/1742-4690-10-160

Transcriptional profiling reveals molecular signatures associated with HIV permissiveness in Th1Th17 cells and identifies Peroxisome Proliferator-Activated Receptor Gammaas an intrinsic negative regulator of viral replication
Cited by: 44
Author(s): Annie Bernier, Aurélie Cleret-Buhot, Yuwei Zhang, Jean-Philippe Goulet, Patricia Monteiro, Annie Gosselin, Sandrina DaFonseca, Vanessa Sue Wacleche, Mohammad Ali Jenabian, Jean Pierre Routy, Cécile Tremblay, Petronela Ancuța
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12974-021-02098-y

Transcriptome profiling of long noncoding RNAs and mRNAs in spinal cord of a rat model of paclitaxel-induced peripheral neuropathy identifies potential mechanisms mediating neuroinflammation and pain
Cited by: 30
Author(s): Yuanyuan Li, Chengyu Yin, Boyu Liu, Huimin Nie, Jie Wang, Danyi Zeng, Ruixiang Chen, Xiaofen He, Jiaqi Fang, Junying Du, Yi Liang, Yongliang Jiang, Jianqiao Fang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pntd.0007673

Transcriptional blood signatures for active and amphotericin B treated visceral leishmaniasis in India
Cited by: 14
Author(s): Michaela Fakiola, O. P. Singh, Genevieve Syn, T. N. Singh, Bhawana Singh, Jaya Chakravarty, Jenefer M. Blackwell
Software Mentions: 2
Published: about 7 years ago

10.1186/s12284-021-00459-y

Genomics Analyses Reveal Unique Classification, Population Structure and Novel Allele of Neo-Tetraploid Rice
Cited by: 12
Author(s): Hang Yu, Qihang Li, Yudi Li, Haijun Yang, Zengjun Lu, Jinwen Wu, Zemin Zhang, Muhammad Qasim Shahid, Xiangdong Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12284-021-00524-6

Metabolomic and Transcriptomic Changes Induced by Potassium Deficiency During Sarocladium oryzae Infection Reveal Insights into Rice Sheath Rot Disease Resistance
Cited by: 9
Author(s): Jianglin Zhang, Zhifeng Lu, Tao Ren, Rihuan Cong, Xiaokun Li
Software Mentions: 2
Published: almost 5 years ago

10.1155/2020/9747826

Screening of a Novel Upregulated lncRNA, A2M-AS1, That Promotes Invasion and Migration and Signifies Poor Prognosis in Breast Cancer
Cited by: 11
Author(s): Kai Fang, Chen Hu, Xiufen Zhang, Zijian Guo, Lihua Li
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.202647

A dynamic nomogram for predicting diabetic macular edema in type 2 diabetes patients based on plasma cytokines
Cited by: 3
Author(s): Ning Zhang, Jing Ke, Dawei Zhang, Yuanyuan Zhang, Ying Fu, Bin Cao, Dong Zhao
Software Mentions: 2
Published: over 5 years ago

10.1126/sciadv.abg4081

Immune checkpoint inhibitors increase T cell immunity during SARS-CoV-2 infection
Cited by: 26
Author(s): Nader Yatim, Jérémy Boussier, P. Tétu, Nikaïa Smith, Timothée Bruel, Bruno Charbit, Laura Barnabei, Aurélien Corneau, Laetitia Da Meda, Clara Allayous, Barouyr Baroudjian, Majdi Jebali, F. Herms, Ludivine Grzelak, Isabelle Staropoli, Vincent Calmettes, Jérôme Hadjadj, Olivier Peyrony, C. Cassius, Jérôme LeGoff, N. Kramkimel, S. Aractingi, Magnus Fontes, Catherine Blanc, Frédéric Rieux‐Laucat, Olivier Schwartz, Benjamin Terrier, Darragh Duffy, Célèste Lebbe
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.676124

Malignant Tumor Purity Reveals the Driven and Prognostic Role of CD3E in Low-Grade Glioma Microenvironment
Cited by: 10
Author(s): Xiuqin Lu, Chuanyu Li, Wenhao Xu, Yuanyuan Wu, Jian Wang, Shuxian Chen, Ye Zhang, Hao Huang, Haiyang Huang, Wangrui Liu
Software Mentions: 2
Published: almost 5 years ago

10.1038/sdata.2015.30

Comparative, transcriptome analysis of self-organizing optic tissues
Cited by: 10
Author(s): Munazah Andrabi, Shigehiro Kuraku, Nozomu Takata, Yoshiki Sasai, Nick R. Love
Software Mentions: 2
Published: about 11 years ago

10.1038/cddis.2017.398

Three-dimensional tumor cell growth stimulates autophagic flux and recapitulates chemotherapy resistance
Cited by: 40
Author(s): Corinna Bingel, E Koeneke, Johannes Ridinger, Annika Bittmann, Martin Sill, Heike Peterziel, Jagoda K. Wrobel, Inga Edeltraud Rettig, Till Milde, Uta Fernekorn, Frank Weise, Andreas Schober, Olaf Witt, Ina Oehme
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pgen.1009234

A novel gene-diet interaction promotes organismal lifespan and host protection during infection via the mitochondrial UPR
Cited by: 13
Author(s): Mustafi Raisa Amin, Siraje Arif Mahmud, Jonathan Dowgielewicz, Madhab Sapkota, Mark W. Pellegrino
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-020-02651-6

Comprehensive analysis of the Ppatg3 mutant reveals that autophagy plays important roles in gametophore senescence in Physcomitrella patens
Cited by: 6
Author(s): Zexi Chen, Wenbo Wang, Xiaojun Pu, Xueyi Dong, Bei Gao, Ping Li, Yulin Jia, Aizhong Liu, Li Liu
Software Mentions: 2
Published: almost 6 years ago

10.1111/liv.14692

The biological process of lysine‐tRNA charging is therapeutically targetable in liver cancer
Cited by: 8
Author(s): Ruyi Zhang, Lisanne Noordam, Xumin Ou, Bo Ma, Yunlong Li, Priyadip Das, Shaojun Shi, Jiaye Liu, Ling Wang, Pengfei Li, Monique M A Verstegen, D. Srinivasa Reddy, Luc J. W. van der Laan, Maikel P. Peppelenbosch, Jaap Kwekkeboom, Ron Smits
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2021.659123

Long Non-Coding RNA LINC01410 Promoted Tumor Progression via the ErbB Signaling Pathway by Targeting STAT5 in Gallbladder Cancer
Cited by: 0
Author(s): Lili Lü, Shilong Zhang, Zhengqing Song, Weiqi Lu, Zhiming Wang, Yuhong Zhou
Software Mentions: 2
Published: about 5 years ago

10.1038/srep11606

Microbial population dynamics in response to Pectobacterium atrosepticum infection in potato tubers
Cited by: 45
Author(s): Viia Kõiv, Märt Roosaare, Eve Vedler, Paula Ann Kivistik, Kristel Toppi, David W. Schryer, Maido Remm, Tanel Tenson, Andres Mäe
Software Mentions: 2
Published: about 11 years ago

10.1038/srep12601

Inner workings of thrombolites: spatial gradients of metabolic activity as revealed by metatranscriptome profiling
Cited by: 42
Author(s): Jennifer M. Mobberley, Christina L. Khodadad, Pieter T. Visscher, R. Pamela Reid, Paul D. Hagan, Jamie S. Foster
Software Mentions: 2
Published: about 11 years ago

10.1002/cam4.2905

Characterization of the immune microenvironment in brain metastases from different solid tumors
Cited by: 8
Author(s): Jinling Jiang, Lihong Wu, Fei Yuan, Jun Ji, Xiaojing Lin, Wanning Yang, Junwei Wu, Min Shi, Hui Yang, Yanna Ma, Song Xue, Zhenggang Zhu, Henghui Zhang, Jun Zhang
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-019-1644-y

Elevated CO2 concentration promotes photosynthesis of grape (Vitis vinifera L. cv. ‘Pinot noir’) plantlet in vitro by regulating RbcS and Rca revealed by proteomic and transcriptomic profiles
Cited by: 25
Author(s): Xin Zhao, Wenfang Li, Ying Wang, Zhiying Ma, Shuai Yang, Qi Zhou, Juan Mao, Baihong Chen
Software Mentions: 2
Published: over 7 years ago

10.1155/2020/3925189

Genetic Polymorphisms and Forensic Efficiencies of a Set of Novel Autosomal InDel Markers in a Chinese Mongolian Group
Cited by: 4
Author(s): Wenqing Zhang, Xiaoye Jin, Yijie Wang, Tingting Kong, Wei Cui, Chong Chen, Yuxin Guo, Bofeng Zhu
Software Mentions: 2
Published: over 6 years ago

10.1128/AEM.00180-19

Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile <i>Methanocaldococcus jannaschii</i> during Hydrogen-Limited Growth and Interspecies Hydrogen Transfer
Cited by: 17
Author(s): Begüm D. Topçuoğlu, Cem Meydan, Tran B. Nguyen, Susan Q. Lang, James F. Holden
Software Mentions: 2
Published: over 7 years ago

10.1038/srep20602

Intestinal Microbiota Distinguish Gout Patients from Healthy Humans
Cited by: 213
Author(s): Zhuang Guo, Jiachao Zhang, Zhanli Wang, Kay Ying Ang, Shi Huang, Qiangchuan Hou, Xiaoquan Su, Jun Qiao, Yi Zheng, Lifeng Wang, Eileen Y. Koh, Ho Danliang, Jian Xu, Yuan Kun Lee, Heping Zhang
Software Mentions: 2
Published: over 10 years ago

10.1038/srep22919

Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans
Cited by: 27
Author(s): Salah Zangenah, Nasir M. Abbasi, Anders F. Andersson, Peter Bergman
Software Mentions: 2
Published: over 10 years ago

10.1038/srep24984

Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids
Cited by: 29
Author(s): Dejun Li, Rizhong Zeng, Yan Li, Manman Zhao, Jinquan Chao, Li Yu, Kai Wang, Lihuang Zhu, Weimin Tian, Chengzhi Liang
Software Mentions: 2
Published: over 10 years ago

10.1038/srep27256

Induction of Germ Cell-like Cells from Porcine Induced Pluripotent Stem Cells
Cited by: 33
Author(s): Hanning Wang, Jinzhu Xiang, Wei Zhang, Junhong Li, Qingqing Wei, Zhong Liu, Hongsheng Ouyang, Jianyong Han
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0195771

High-resolution temporal and regional mapping of MAPT expression and splicing in human brain development
Cited by: 55
Author(s): Marco M. Hefti, Kurt Farrell, SoongHo Kim, Kathryn R. Bowles, Mary Fowkes, Towfique Raj, John F. Crary
Software Mentions: 2
Published: over 8 years ago

10.1186/s12890-021-01655-8

DNA methylation and gene expression profiles to identify childhood atopic asthma associated genes
Cited by: 4
Author(s): Rui Chen, Li-Zhen Piao, Ling Liu, Xiaofei Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.611081

STAM Prolongs Clear Cell Renal Cell Carcinoma Patients' Survival via Inhibiting Cell Growth and Invasion
Cited by: 2
Author(s): Tuo Deng, Zihao He, Xiaolu Duan, Danan Gu, Chao Cai, Wenqi Wu, Yongda Liu, Guohua Zeng
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers11121981

The Hidden Story of Heterogeneous B-raf V600E Mutation Quantitative Protein Expression in Metastatic Melanoma—Association with Clinical Outcome and Tumor Phenotypes
Cited by: 17
Author(s): Lázaro Betancourt, Attila Marcell Szász, Magdalena Kuras, Jimmy Rodriguez Murillo, Y. Sugita, Indira Pla, Zsolt Horváth, Krzysztof Pawłowski, Melinda Rezeli, Kenichi Miharada, Jeovanis Gil, Jonatan Eriksson, Roger Appelqvist, Tasso Miliotis, Bo Baldetorp, Christian Ingvar, Håkan Olsson, Lotta Lundgren, Péter Horvatovich, Charlotte Welinder, Elisabet Wieslander, Ho Jeong Kwon, Johan Malm, István Németh, Göran Jönsson, David Fenyö, Aniel Sánchez, György Markó-Varga
Software Mentions: 2
Published: over 6 years ago

10.1038/srep32524

Metagenomic approach reveals microbial diversity and predictive microbial metabolic pathways in Yucha, a traditional Li fermented food
Cited by: 61
Author(s): Jiachao Zhang, Xiaoru Wang, Dongxue Huo, Wu Li, Qisong Hu, Chang Xu, Sixin Liu, Congfa Li
Software Mentions: 2
Published: about 10 years ago

10.1186/s12944-021-01545-2

Negative correlation between endoglin levels and coronary atherosclerosis
Cited by: 2
Author(s): Haibin Chen, Yiping Wang, Bing Sun, Xiao Bao, Yu Tang, Feifei Huang, Sibo Zhu, Jiahong Xu
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13018-020-01655-0

MicroRNA-1202 plays a vital role in osteoarthritis via KCNQ1OT1 has-miR-1202-ETS1 regulatory pathway
Cited by: 9
Author(s): Changzeng Liu, Jianming Gao, Guangyan Su, Yu‐Tao Xiang, Wei Le
Software Mentions: 2
Published: over 6 years ago

10.1038/s41419-020-2666-y

ΔNp63α-induced DUSP4/GSK3β/SNAI1 pathway in epithelial cells drives endometrial fibrosis
Cited by: 24
Author(s): Guangfeng Zhao, Ruotian Li, Yun Cao, Minmin Song, Pengju Jiang, Qianwen Wu, Zhenhua Zhou, Hui Zhu, Huiyan Wang, Chenyan Dai, Dan Liú, Simin Yao, Haining Lv, Limin Wang, Jianwu Dai, Yan Zhou, Yali Hu
Software Mentions: 2
Published: about 6 years ago

10.1186/s12870-017-1063-x

Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton
Cited by: 17
Author(s): Yanpeng Li, Yang Tie-gang, Dandan Dai, Ying Hu, Xiaoyang Guo, Hongwei Guo
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pgen.1008401

A small set of conserved genes, including sp5 and Hox, are activated by Wnt signaling in the posterior of planarians and acoels
Cited by: 23
Author(s): Aneesha G. Tewari, Jared H. Owen, Christian P. Petersen, Daniel E. Wagner, Peter W. Reddien
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep37929

Variations in abundance, diversity and community composition of airborne fungi in swine houses across seasons
Cited by: 44
Author(s): Priyanka Kumari, Cheolwoon Woo, Naomichi Yamamoto, Hee Sun Choi
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep38709

Regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern Zhejiang, East China Sea
Cited by: 33
Author(s): Kai Wang, Xiansen Ye, Huajun Zhang, Heping Chen, Demin Zhang, Lian Liu
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2020.607893

Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae)
Cited by: 11
Author(s): Mert Dogan, Milan Pouch, Terezie Mandáková, Petra Hloušková, Xi Guo, P.J.D. Winter, Zuzana Chumová, Adriaan van Niekerk, Klaus Mummenhoff, Ihsan A. Al‐Shehbaz, Ladislav Mucina, Martin A. Lysak
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo11080490

Exploring Genotype-by-Environment Interactions of Chemical Composition of Raspberry by Using a Metabolomics Approach
Cited by: 10
Author(s): Sara Durán-Soria, Delphine M. Pott, Frank Will, Jennifer Mesa‐Marín, M. Lewandowski, Karolina Celejewska, A. Masny, E. Żurawicz, Nikki Jennings, Anita Sønsteby, Erika Krüger, Sonia Osorio
Software Mentions: 2
Published: about 5 years ago

10.1523/JNEUROSCI.2571-18.2019

The Spinal Transcriptome after Cortical Stroke: In Search of Molecular Factors Regulating Spontaneous Recovery in the Spinal Cord
Cited by: 22
Author(s): Julia Kaiser, Martina A. Maibach, Iris Salpeter, Niels Hagenbuch, Vladimir B. C. de Souza, Mark D. Robinson, Martin E. Schwab
Software Mentions: 2
Published: over 7 years ago

10.1155/2019/6706354

Integrative Analysis Reveals Comprehensive Altered Metabolic Genes Linking with Tumor Epigenetics Modification in Pan-Cancer
Cited by: 6
Author(s): Yahui Shi, Jinjia Wei, Zixi Chen, Yuhong Yuan, Xingsong Li, Yanyu Zhang, Yuhuan Meng, Yumin Hu, Hongli Du
Software Mentions: 2
Published: almost 7 years ago

10.1186/1755-8794-8-S2-S5

Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research
Cited by: 56
Author(s): Bin Chen, Marina Sirota, Hua Fan-Minogue, Dexter Hadley, Atul J. Butte
Software Mentions: 2
Published: over 11 years ago

10.1128/AEM.00885-21

Mining the Factors Driving the Evolution of the Pit Mud Microbiome under the Impact of Long-Term Production of Strong-Flavor Baijiu
Cited by: 30
Author(s): Li‐Juan Chai, Wei Qian, Xiao-Zhong Zhong, Xiaojuan Zhang, Zhen‐Ming Lu, Suyi Zhang, Songtao Wang, Caihong Shen, Jin‐Song Shi, Zhenghong Xu
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0199621

A microRNA signature and TGF-β1 response were identified as the key master regulators for spaceflight response
Cited by: 30
Author(s): Afshin Beheshti, Shayoni Ray, Homer Fogle, Daniel C. Berrios, Sylvain V. Costes
Software Mentions: 2
Published: about 8 years ago

10.1186/s12974-020-01834-0

Expression profiling of spinal cord dorsal horn in a rat model of complex regional pain syndrome type-I uncovers potential mechanisms mediating pain and neuroinflammation responses
Cited by: 25
Author(s): Ruixiang Chen, Chengyu Yin, Quanteng Hu, Boyu Liu, Yan Tai, Xiaoli Zheng, Yuanyuan Li, Jianqiao Fang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0211378

The epiphytic microbiota of sour rot-affected grapes differs minimally from that of healthy grapes, indicating causal organisms are already present on healthy berries
Cited by: 10
Author(s): Megan E. Hall, Isabelle O’Bryon, Wayne F. Wilcox, Michael V. Osier, Lance Cadle‐Davidson
Software Mentions: 2
Published: over 7 years ago

10.1038/s41419-019-2177-x

Vitamin D promotes the cisplatin sensitivity of oral squamous cell carcinoma by inhibiting LCN2-modulated NF-κB pathway activation through RPS3
Cited by: 46
Author(s): Zheng‐Ming Huang, Yin Zhang, Haigang Li, Yufeng Zhou, Qianyu Zhang, Rui Chen, Tingting Jin, Kaishun Hu, Shihao Li, Yan Wang, Wei‐liang Chen, Zhiquan Huang
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.104199

Identification of prognostic aging-related genes associated with immunosuppression and inflammation in head and neck squamous cell carcinoma
Cited by: 20
Author(s): Jing Yang, Qingshan Jiang, Lijun Liu, Hong Peng, Yaya Wang, Shuyan Li, Yanhua Tang, Jian Yu, Runliang Gan, Zhifeng Liu
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.203318

MicroRNA-106b-5p inhibits growth and progression of lung adenocarcinoma cells by downregulating IGSF10
Cited by: 1
Author(s): Bowen Ling, Xin Liao, Qiang Tang, Guangbin Ye, Xiaoyun Bin, Jianchu Wang, Yaqin Pang, Guangzi Qi
Software Mentions: 2
Published: about 5 years ago

10.1186/s13023-019-1192-4

New insights on congenital pulmonary airways malformations revealed by proteomic analyses
Cited by: 9
Author(s): Constance Barazzone-Argiroffo, J. Lascano Maillard, Isabelle Vidal, Marie‐Luce Bochaton‐Piallat, Sanja Blaskovic, Yves Donati, Barbara E. Wildhaber, Anne‐Laure Rougemont, Christophe Delacourt, Isabelle Ruchonnet-Métrailler
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-80264-7

Integrated mRNA and miRNA expression profile analysis of female and male gonads in Hyriopsis cumingii
Cited by: 10
Author(s): Yayu Wang, Shenghua Duan, Guiling Wang, Jiale Li
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0229125

Comparative genomic analysis of Proteus spp. isolated from tree shrews indicated unexpectedly high genetic diversity
Cited by: 9
Author(s): Wenpeng Gu, Wenguang Wang, Pinfen Tong, Chenxiu Liu, Jinsheng Jia, Caixia Lü, Yuanyuan Han, Xiaomei Sun, Dexuan Kuang, Na Li, Jiejie Dai
Software Mentions: 2
Published: over 6 years ago

10.1002/mgg3.934

MtDNA polymorphism analyses in the Chinese Mongolian group: Efficiency evaluation and further matrilineal genetic structure exploration
Cited by: 11
Author(s): Qiong Lan, Ting Xie, Xiaoye Jin, Yingying Fang, Shuyan Mei, Guang Yang, Bofeng Zhu
Software Mentions: 2
Published: about 7 years ago

10.1002/mgg3.1235

A novel compound heterozygous missense mutation in <i>ASNS</i> broadens the spectrum of asparagine synthetase deficiency
Cited by: 5
Author(s): Chun Wang, Guiyuan He, Yakun Ge, Runjie Li, Zhenguo Li, Yongzhong Lin
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2015.00882

Evolution, diversification, and expression of KNOX proteins in plants
Cited by: 37
Author(s): Jie Gao, Xue Yang, Wei Zhao, Tiange Lang, Tore Samuelsson
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-021-82709-z

Structural changes in the oral microbiome of the adolescent patients with moderate or severe dental fluorosis
Cited by: 7
Author(s): Qian Wang, Xuelan Chen, Huan Hu, Xiaoyuan Wei, Xiaofan Wang, Zhiqing Peng, Rui Ma, Qian Zhao, Jiangchao Zhao, Jianguo Liu, Feilong Deng
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/9601876

Serum miR-1228-3p and miR-181a-5p as Noninvasive Biomarkers for Non-Small Cell Lung Cancer Diagnosis and Prognosis
Cited by: 21
Author(s): Weixiao Xue, Meng-Yu Zhang, Rui Li, Xiao Liu, Yunhong Yin, Yi-Qing Qu
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2021.711838

Plasmodiophora brassicae-Triggered Cell Enlargement and Loss of Cellular Integrity in Root Systems Are Mediated by Pectin Demethylation
Cited by: 8
Author(s): Karolina Stefanowicz, Monika Szymańska-Chargot, William Truman, Piotr Walerowski, Marcin Olszak, Adam Augustyniak, Arkadiusz Kosmala, Artur Zdunek, Robert Malinowski
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.00406

Genome-Wide Identification of Peanut KCS Genes Reveals That AhKCS1 and AhKCS28 Are Involved in Regulating VLCFA Contents in Seeds
Cited by: 18
Author(s): Dongxin Huai, Xiaomeng Xue, Yang Li, Peng Wang, Jianguo Li, Liying Yan, Yuning Chen, Xin Wang, Nian Liu, Yanping Kang, Zhihui Wang, Yi Huang, Huifang Jiang, Yong Lei, Boshou Liao
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-82252-x

Inhibition of androgen/AR signaling inhibits diethylnitrosamine (DEN) induced tumour initiation and remodels liver immune cell networks
Cited by: 8
Author(s): Timothy H. Helms, Riley Mullins, Jennifer M. Thomas‐Ahner, Samuel K. Kulp, Moray J. Campbell, Fabienne Lucas, Nathan W. Schmidt, D. Lemoine, Surafel Getaneh, Zhiliang Xie, Mitch A. Phelps, Steven K. Clinton, Christopher C. Coss
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83752-6

Allelopathic effect of Artemisia argyi on the germination and growth of various weeds
Cited by: 29
Author(s): Jinxin Li, Le Chen, Qiaohuan Chen, Yuhuan Miao, Peng Zheng, Bisheng Huang, Lan-Ping Guo, Dahui Liu, Hongzhi Du
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0192812

Transcriptome-based signature predicts the effect of taxol in serous ovarian cancer
Cited by: 6
Author(s): Shunyu Hou, Jing Dai
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-84177-x

Effects of different proportions of soft rock additions on organic carbon pool and bacterial community structure of sandy soil
Cited by: 2
Author(s): Wanying Li, Zhen Guo, Juan Li, Jichang Han
Software Mentions: 2
Published: over 5 years ago

10.1186/s12879-019-4123-z

DisV-HPV16, versatile and powerful software to detect HPV in RNA sequencing data
Cited by: 1
Author(s): Bingqing Yan, Xinyi Liu, Siwei Zhang, Siyang Yu, Fangjia Tong, Huanhuan Xie, Lixia Song, Yan Zhang, Lanlan Wei
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2021.725988

Gene Expression Profiling for Differential Diagnosis of Liver Metastases: A Multicenter, Retrospective Cohort Study
Cited by: 3
Author(s): Qifeng Wang, Fen Li, Qingming Jiang, Yifeng Sun, Qiong Liao, Hong‐Wei An, Lili Li, Zhenyu Li, Lifang Fan, Fang Guo, Qinghua Xu, Yixin Wo, Wanli Ren, Junqiu Yue, Bin Meng, Weiping Liu, Xiaoyan Zhou
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-85246-x

A highly expressed mRNA signature for predicting survival in patients with stage I/II non-small-cell lung cancer after operation
Cited by: 6
Author(s): Nan Ma, Lu Si, Meiling Yang, Meihua Li, He Zhou
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-021-03863-w

Multilevel regulation of Wnt signaling by Zic2 in colon cancer due to mutation of β-catenin
Cited by: 5
Author(s): Zhengshui Xu, Jianbao Zheng, Zilu Chen, Jing Guo, Xiaopeng Li, Xingjie Wang, Chao Qu, Liyue Yuan, Cheng Chen, Xuejun Sun, Ji Hee Yu
Software Mentions: 2
Published: about 5 years ago

10.3390/molecules24010015

Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants
Cited by: 9
Author(s): He Su, Yang Chu, Junqi Bai, Lu Gong, Juan Huang, Wen Xu, Jing Zhang, Xiaohui Qiu, Jiang Xu, Zhixing Huang
Software Mentions: 2
Published: over 7 years ago

10.1186/s12870-020-2288-7

Comparative functional genomics analysis of cytochrome P450 gene superfamily in wheat and maize
Cited by: 45
Author(s): Yixuan Li, Kaifa Wei
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.664032

Expression and Prognostic Significance of PD-L2 in Diffuse Large B-Cell Lymphoma
Cited by: 5
Author(s): Qianhui Gu, Jing Li, Zhuolin Chen, Jie Zhang, Hui Shen, Xiaobing Miao, Zhe Ying, Xiaohong Xu, Song He
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-86259-2

Meta-QTL and ortho-MQTL analyses identified genomic regions controlling rice yield, yield-related traits and root architecture under water deficit conditions
Cited by: 35
Author(s): Bahman Khahani, Elahe Tavakol, Vahid Shariati, Laura Rossini
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.685641

Global Analysis of Microbiota Signatures in Four Major Types of Gastrointestinal Cancer
Cited by: 13
Author(s): Jihan Wang, Yangyang Wang, Zhenzhen Li, Xiaoguang Gao, Dageng Huang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41419-021-03816-3

Proteomics of extracellular vesicles in plasma reveals the characteristics and residual traces of COVID-19 patients without underlying diseases after 3 months of recovery
Cited by: 20
Author(s): Kaimin Mao, Qi Tan, Yanling Ma, Sufei Wang, Hua Zhong, Yuhan Liao, Qi Huang, Wenjing Xiao, Hui Xia, Xingyi Tan, Ping Luo, Jing Xu, Danling Long, Yang Jin
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86970-0

Biosyntheses characterization of alkaloids and flavonoids in Sophora flavescens by combining metabolome and transcriptome
Cited by: 9
Author(s): Guangfei Wei, Yongzhong Chen, Xiaotong Guo, Jianhe Wei, Lixin Dong, Shilin Chen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87048-7

Genome-wide identification and analysis of long non-coding RNAs involved in fatty acid biosynthesis in young soybean pods
Cited by: 9
Author(s): Ben Ma, Aijing Zhang, Qiuzhu Zhao, Zeyuan Li, Abraham Lamboro, Haobo He, Yue Li, Suqi Jiao, Shuyan Guan, Siyan Liu, Dan Yao, Jun Zhang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87542-y

The application of ozonated water rearranges the Vitis vinifera L. leaf and berry transcriptomes eliciting defence and antioxidant responses
Cited by: 8
Author(s): Ana Campayo, Stefania Savoi, Charles Romieu, Alberto José López-Jiménez, Kortes Serrano de la Hoz, M. Rosario Salinas, Laurent Torregrosa, Gonzalo L. Alonso
Software Mentions: 2
Published: over 5 years ago

10.1016/j.bbalip.2017.11.005

Specific oxygenation of plasma membrane phospholipids by Pseudomonas aeruginosa lipoxygenase induces structural and functional alterations in mammalian cells
Cited by: 24
Author(s): Maceler Aldrovandi, Swathi Banthiya, Sven W. Meckelmann, You Zhou, Dagmar Heydeck, Valerie Bridget O'Donnell, Hartmut Kühn
Software Mentions: 2
Published: over 8 years ago

10.1042/BSR20201704

Data mining of immune-related prognostic genes in metastatic melanoma microenvironment
Cited by: 4
Author(s): Wei Han, Biao Huang, Xiaoyu Zhao, Ge Shen
Software Mentions: 2
Published: almost 6 years ago

10.3390/molecules22122126

Biochemical, Physiological and Transcriptomic Comparison between Burley and Flue-Cured Tobacco Seedlings in Relation to Carbohydrates and Nitrate Content
Cited by: 17
Author(s): Yafei Li, Huijuan Yang, Dong Chil Chang, Shuzhen Lin, Yuqing Feng, Jingjing Li, Hongzhi Shi
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2021.667929

Genome-Wide Identification and Evolutionary Analysis of Gossypium Tubby-Like Protein (TLP) Gene Family and Expression Analyses During Salt and Drought Stress
Cited by: 13
Author(s): Nasreen Bano, Shafquat Fakhrah, Chandra Sekhar Mohanty, Sumit K. Bag
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89713-3

Heme cytotoxicity is the consequence of endoplasmic reticulum stress in atherosclerotic plaque progression
Cited by: 2
Author(s): Dávid Pethő, Zoltán Hendrik, Annamária Nagy, Lívia Beke, Andreas Patsalos, László Nagy, Szilárd Póliska, Gábor Méhes, Csaba Tóth, László Potor, John W. Eaton, Harry S. Jacob, György Balla, József Balla, Tamás Gáll
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.00625

Genome-Wide Association Study Reveals the Genetic Architecture of Stripe Rust Resistance at the Adult Plant Stage in Chinese Endemic Wheat
Cited by: 6
Author(s): Jing Li, Yunfeng Jiang, Fangjie Yao, Long Li, Yuqi Wang, Yu Wu, Hao Li, Jirui Wang, Qiantao Jiang, Houyang Kang, Wei Li, Pengfei Qi, Jian Ma, Zhien Pu, Shoufen Dai, Yuming Wei, Youliang Zheng, Guoyue Chen
Software Mentions: 2
Published: over 6 years ago

10.3390/molecules26113172

Modification of Sensory Expression of 3-Isobutyl-2-methoxypyrazine in Wines through Blending Technique
Cited by: 6
Author(s): Mengqi Ling, Yu Zhou, Yi-Bin Lan, Chi Cheng, Guangfeng Wu, Chang‐Qing Duan, Ying Shi
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-016-1148-9

IGDD: a database of intronless genes in dicots
Cited by: 21
Author(s): Hanwei Yan, Xiaogang Dai, Kai Feng, Qiuyue Ma, Tongming Yin
Software Mentions: 2
Published: about 10 years ago

10.1155/2021/6626094

Screening of Hub Genes Associated with Pulmonary Arterial Hypertension by Integrated Bioinformatic Analysis
Cited by: 9
Author(s): Yu Zeng, Nanhong Li, Zhenzhen Zheng, Riken Chen, Min Peng, Wang Liu, Jiang Zhu, Mingqing Zeng, Junfen Cheng, Cheng Hong
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.676364

Role of RNA N6-Methyladenosine Modification in Male Infertility and Genital System Tumors
Cited by: 10
Author(s): Shuai Liu, Yongfeng Lao, Yanan Wang, Rongxin Li, Xuefeng Fang, Yunchang Wang, Xiaolong Gao, Zhong Dong
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2021.659505

Non-Lactobacillus-Dominated Vaginal Microbiota Is Associated With a Tubal Pregnancy in Symptomatic Chinese Women in the Early Stage of Pregnancy: A Nested Case–Control Study
Cited by: 3
Author(s): Xiaofeng Ruan, Yingxuan Zhang, Si Chen, Xiaorong Liu, Fangfang Zhu, Yu‐Ning Huang, Xiaojing Liu, Songping Luo, Gaopi Deng, Jie Gao
Software Mentions: 2
Published: about 5 years ago

10.3389/fcimb.2019.00246

Variability in Genomic and Virulent Properties of Porphyromonas gingivalis Strains Isolated From Healthy and Severe Chronic Periodontitis Individuals
Cited by: 16
Author(s): Katterinne N. Mendez, Anilei Hoare, Cristopher Soto, Isaac Maximiliano Bugueno, Marcela Olivera, Claudio Meneses, José M. Pérez-Donoso, Eduardo Castro-Nallar, Denisse Bravo
Software Mentions: 2
Published: about 7 years ago

10.3389/fimmu.2020.614343

Use of the Tissue Common Rejection Module Score in Kidney Transplant as an Objective Measure of Allograft Inflammation
Cited by: 5
Author(s): Arya Zarinsefat, José Manuel Arreola Guerra, Tara K. Sigdel, Izabella Damm, Reuben D. Sarwal, Chitranon Chan-on, Gyula Szabó, Jorge L. Aguilar-Frasco, Xicohténcatl Ixtlapale-Carmona, Carlos Salinas-Ramos, Leonardo Ramirez-Martinez, C B. Ramirez, Mario Vilatobá, Luis Eduardo Morales Buenrostro, Josefina Alberú, Minnie M. Sarwal
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.623280

Thymic Epithelial Cell-Derived IL-15 and IL-15 Receptor α Chain Foster Local Environment for Type 1 Innate Like T Cell Development
Cited by: 5
Author(s): Huishan Tao, Lei Li, Nan‐Shih Liao, Kimberly S. Schluns, Shirley Luckhart, John W. Sleasman, Xiao‐Ping Zhong
Software Mentions: 2
Published: over 5 years ago

10.1002/2211-5463.12952

miRNA profiling of primate cervicovaginal lavage and extracellular vesicles reveals miR‐186‐5p as a potential antiretroviral factor in macrophages
Cited by: 8
Author(s): Zezhou Zhao, Dillon C. Muth, Kathleen Mulka, Zhaohao Liao, Bonita H. Powell, Grace Hancock, Kelly A. Metcalf Pate, Kenneth W. Witwer
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2021.708770

Transcriptional Profiling and Functional Analysis of N1/N2 Neutrophils Reveal an Immunomodulatory Effect of S100A9-Blockade on the Pro-Inflammatory N1 Subpopulation
Cited by: 21
Author(s): Andreea C. Mihaila, Letitia Ciortan, Razvan D. Macarie, Mihaela Vadana, Sergiu Cecoltan, Mihai Bogdan Preda, Ariana Hudiță, Ana-Maria Gan, Gabriel Jakobsson, Monica Pirvulescu, E. Magda Barbu, Șerban Mihai Bălănescu, Maya Simionescu, Alexandru Schiopu, Elena Butoi
Software Mentions: 2
Published: about 5 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572