cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-86259-2

Meta-QTL and ortho-MQTL analyses identified genomic regions controlling rice yield, yield-related traits and root architecture under water deficit conditions
Cited by: 35
Author(s): Bahman Khahani, Elahe Tavakol, Vahid Shariati, Laura Rossini
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-86970-0

Biosyntheses characterization of alkaloids and flavonoids in Sophora flavescens by combining metabolome and transcriptome
Cited by: 9
Author(s): Guangfei Wei, Yongzhong Chen, Xiaotong Guo, Jianhe Wei, Lixin Dong, Shilin Chen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-87048-7

Genome-wide identification and analysis of long non-coding RNAs involved in fatty acid biosynthesis in young soybean pods
Cited by: 9
Author(s): Ben Ma, Aijing Zhang, Qiuzhu Zhao, Zeyuan Li, Abraham Lamboro, Haobo He, Yue Li, Suqi Jiao, Shuyan Guan, Siyan Liu, Dan Yao, Jun Zhang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-87542-y

The application of ozonated water rearranges the Vitis vinifera L. leaf and berry transcriptomes eliciting defence and antioxidant responses
Cited by: 8
Author(s): Ana Campayo, Stefania Savoi, Charles Romieu, Alberto José López-Jiménez, Kortes Serrano de la Hoz, M. Rosario Salinas, Laurent Torregrosa, Gonzalo L. Alonso
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89713-3

Heme cytotoxicity is the consequence of endoplasmic reticulum stress in atherosclerotic plaque progression
Cited by: 2
Author(s): Dávid Pethő, Zoltán Hendrik, Annamária Nagy, Lívia Beke, Andreas Patsalos, László Nagy, Szilárd Póliska, Gábor Méhes, Csaba Tóth, László Potor, John W. Eaton, Harry S. Jacob, György Balla, József Balla, Tamás Gáll
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91934-5

Differential methylation of G-protein coupled receptor signaling genes in gastrointestinal neuroendocrine tumors
Cited by: 5
Author(s): Seyoun Byun, Kajsa E. Affolter, Angela K. Snow, Karen Curtin, Austin R. Cannon, Lisa Cannon-Albright, Ramya Thota, Deborah W. Neklason
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91742-x

Gender specific airway gene expression in COPD sub-phenotypes supports a role of mitochondria and of different types of leukocytes
Cited by: 7
Author(s): Anna Esteve‐Codina, Thomas P. Hofer, Dorothe Burggraf, Marion Heiß-Neumann, Wolfgang Gesierich, Anne Boland, Robert Olaso, Marie-Thérèse Bihoreau, Jean‐François Deleuze, Winfried Moeller, Otmar Schmid, María Soler Artigas, Kathrin Renner, Jens M. Hohlfeld, Tobias Welte, Thomas Fuehner, Lukas Jerrentrup, Andreas Rembert Koczulla, Timm Greulich, Antje Prasse, Joachim Müller–Quernheim, Sumit Gupta, Christopher Brightling, Deepak Subramanian, David Parr, Umme Kolsum, Vandana Gupta, Imre Barta, Balázs Döme, J. Strausz, Mariarita Stendardo, Marco Piattella, Pierà Boschetto, Damian Korzybski, Dorota Górecka, Adam Nowiński, Marc Dabad, Marcos Fernández-Callejo, David Endesfelder, Wolfgang zu Castell, Pieter S. Hiemstra, Per Venge, Elfriede Noeßner, Thasso Griebel, Simon Heath, Dave Singh, Marta Gut, Loems Ziegler-Heitbrock
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92701-2

Integrated network analysis identifying potential novel drug candidates and targets for Parkinson's disease
Cited by: 8
Author(s): Pusheng Quan, Kai Wang, Yan Shi, Shirong Wen, Chengqun Wei, Xinyu Zhang, Jingwei Cao, Lifen Yao
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-94287-1

Silicon mitigates nutritional stress in quinoa (Chenopodium quinoa Willd.)
Cited by: 19
Author(s): Ana Paula de Assis Sales, Cid Naudi Silva Campos, Jonás Pereira de Souza, Dalila Lopes da Silva, Kamilla Silva Oliveira, Larissa Pereira Ribeiro Teodoro, Paulo Eduardo Teodoro
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-98184-5

The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids
Cited by: 5
Author(s): Tue Kjærgaard Nielsen, Benjamin Horemans, Cédric Lood, Jeroen T’Syen, Vera van Noort, Rob Lavigne, Lea Ellegaard-Jensen, Ole Hylling, Jens Aamand, Dirk Springael, Lars Hestbjerg Hansen
Software Mentions: 2
Published: about 3 years ago

10.1126/scitranslmed.abf8654

High titers and low fucosylation of early human anti–SARS-CoV-2 IgG promote inflammation by alveolar macrophages
Cited by: 145
Author(s): Willianne Hoepel, Hung Jen Chen, Chiara E. Geyer, Sona Allahverdiyeva, Xue D. Manz, Steven W. de Taeye, Jurjan Aman, Lynn Mes, Maurice Steenhuis, Guillermo R. Griffith, Peter I. Bonta, Philip J.M. Brouwer, Tom G. Caniels, Karlijn van der Straten, Korneliusz Golebski, René E. Jonkers, Mads Delbo Larsen, Federica Linty, Jan Nouta, Cindy P. A. A. van Roomen, Frank E.H.P. van Baarle, Cornelis M. van Drunen, Gertjan Wolbink, Alexander P.J. Vlaar, Godelieve J. de Bree, Rogier W. Sanders, Lisa Willemsen, Annette E. Neele, Diederik van de Beek, Theo Rispens, Manfred Wuhrer, Harm Jan Bogaard, Marit J. van Gils, Gestur Vidarsson, Menno P.J. de Winther, Jeroen den Dunnen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41392-021-00690-5

The zinc finger transcription factor, KLF2, protects against COVID-19 associated endothelial dysfunction
Cited by: 27
Author(s): Suowen Xu, Yujie Liu, Yu Ding, Sihui Luo, Xueying Zheng, Xiumei Wu, Zhenghong Liu, Iqra Ilyas, Su-Yu Chen, Shuxin Han, Peter J. Little, Mukesh K. Jain, Jianping Weng
Software Mentions: 2
Published: over 3 years ago

10.1016/j.stemcr.2020.03.026

Myogenic Progenitor Cell Lineage Specification by CRISPR/Cas9-Based Transcriptional Activators
Cited by: 15
Author(s): Jennifer B. Kwon, Ashish Vankara, Adarsh R. Ettyreddy, Joel D. Bohning, Charles A. Gersbach
Software Mentions: 2
Published: over 4 years ago

10.1186/s13287-019-1235-8

microRNA-301b-3p downregulation underlies a novel inhibitory role of long non-coding RNA MBNL1-AS1 in non-small cell lung cancer
Cited by: 34
Author(s): Peng Li, Wei Xing, Jinliang Xu, Dandan Yuan, Guanghui Liang, Baoxing Liu, MA Hollywood
Software Mentions: 2
Published: over 5 years ago

10.1186/s13287-020-02047-1

Targeted expression profiling reveals distinct stages of early canine fibroblast reprogramming are regulated by 2-oxoglutarate hydroxylases
Cited by: 6
Author(s): Ian C Tobias, Mian-Mian C. Kao, Thomas Parmentier, Hailey Hunter, Jonathan LaMarre, Dean H. Betts
Software Mentions: 2
Published: about 4 years ago

10.1186/s13287-021-02244-6

Exosomes from human umbilical cord mesenchymal stem cells attenuate the inflammation of severe steroid-resistant asthma by reshaping macrophage polarization
Cited by: 36
Author(s): Bing Dong, Chao Wang, Jing Zhang, Jinrong Zhang, Yinuo Gu, Xiaoping Guo, Xu Zuo, Pan He, Alan Hsu, Guoqiang Wang, Fang Wang
Software Mentions: 2
Published: over 3 years ago

10.1186/s13287-021-02480-w

Hypoxic preconditioning rejuvenates mesenchymal stem cells and enhances neuroprotection following intracerebral hemorrhage via the miR-326-mediated autophagy
Cited by: 29
Author(s): Jianyang Liu, Jialin He, Lite Ge, Han Xiao, Yan Huang, Lei Zeng, Zheng Jiang, Ming Lu
Software Mentions: 2
Published: over 3 years ago

10.7150/thno.31502

A Comprehensive Study of Vesicular and Non-Vesicular miRNAs from a Volume of Cerebrospinal Fluid Compatible with Clinical Practice
Cited by: 16
Author(s): Endika Prieto-Fernández, Ana M. Aransay, Félix Royo, Esperanza González, Juan José Lozano, Borja Santos-Zorrozúa, Nuria Macías-Cámara, Monika González, Raquel Pérez Garay, Javier Benito, África García-Orad, Juan Manuel Falcón‐Pérez
Software Mentions: 2
Published: almost 6 years ago

10.7150/thno.57701

TGF-β loaded exosome enhances ischemic wound healing in vitro and in vivo
Cited by: 46
Author(s): Ao Shi, Jialun Li, Xiaozhen Guo, Michael S. Sabbah, Soulmaz Boroumand, Tony Chieh-Ting Huang, Chunfeng Zhao, André Terzic, Atta Behfar, Steven L. Moran
Software Mentions: 2
Published: almost 4 years ago

10.1111/1759-7714.13411

Exosome miR‐27a‐3p secreted from adipocytes targets ICOS to promote antitumor immunity in lung adenocarcinoma
Cited by: 13
Author(s): Xuehan Fan, Jingya Wang, Tingting Qin, Yujia Zhang, Wenting Liu, Kaiting Jiang, Dingzhi Huang
Software Mentions: 2
Published: over 4 years ago

10.3390/toxins12070429

Insights into Aflatoxin B1 Toxicity in Cattle: An In Vitro Whole-Transcriptomic Approach
Cited by: 22
Author(s): Marianna Pauletto, Roberta Tolosi, Mery Giantin, Giorgia Guerra, Andrea Barbarossa, Anna Zaghini, Mauro Dacasto
Software Mentions: 2
Published: over 4 years ago

10.1101/2020.12.28.424565

SARS-CoV-2 disease severity and transmission efficiency is increased for airborne but not fomite exposure in Syrian hamsters
Cited by: 13
Author(s): Julia R Port, Claude Kwe Yinda, Irene Offei Owusu, Myndi G. Holbrook, Robert J. Fischer, Trenton Bushmaker, Victoria A. Avanzato, Jonathan Schulz, Neeltje van Doremalen, Chad S. Clancy, Vincent J. Munster
Software Mentions: 2
Published: almost 4 years ago

10.1101/2020.08.11.246314

K18-hACE2 mice develop respiratory disease resembling severe COVID-19
Cited by: 21
Author(s): Claude Kwe Yinda, Julia R Port, Trenton Bushmaker, Irene Offei Owusu, Victoria A. Avanzato, Robert J. Fischer, Jonathan Schulz, Myndi G. Holbrook, Madison J. Hebner, Rebecca Rosenke, Tina Thomas, Andrea Marzi, Sonja M. Best, Emmie de Wit, Carl Shaia, Neeltje van Doremalen, Vincent J. Munster
Software Mentions: 2
Published: over 4 years ago

10.1128/mBio.00703-17

Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow’s Capacity To Harvest Energy from Its Feed
Cited by: 99
Author(s): Goor Sasson, Sheerli Kruger Ben-Shabat, Eyal Seroussi, Adi Doron‐Faigenboim, Naama Shterzer, Shamay Yaacoby, Margret E. Berg Miller, Bryan A. White, Eran Halperin, Itzhak Mizrahi
Software Mentions: 2
Published: about 7 years ago

10.1128/mBio.02940-20

SARS-CoV-2 Infection Severity Is Linked to Superior Humoral Immunity against the Spike
Cited by: 75
Author(s): Jenna J. Guthmiller, Olivia Stovicek, Jiaolong Wang, Siriruk Changrob, Lei Li, Peter Halfmann, Nai Ying Zheng, Henry A. Utset, Christopher T. Stamper, Haley L. Dugan, William Miller, Min Huang, Ya-Nan Dai, Christopher A. Nelson, Paige D. Hall, Maud O. Jansen, Kumaran Shanmugarajah, Jessica S. Donington, Florian Krammer, Daved H. Fremont, A. Joachimiak, Yoshihiro Kawaoka, Vera Tešić, Maria Lucia Madariaga, Patrick C. Wilson
Software Mentions: 2
Published: almost 4 years ago

10.1128/mBio.03328-20

Balancing Positive and Negative Selection: In Vivo Evolution of Candida lusitaniae MRR1
Cited by: 7
Author(s): Elora G. Demers, Jason E. Stajich, Alix Ashare, Patricia Occhipinti, Deborah A. Hogan
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.00863-21

Functional Genomic and Biochemical Analysis Reveals Pleiotropic Effect of Congo Red on Aspergillus fumigatus
Cited by: 18
Author(s): Liu Z, Shriya Raj, Norman van Rhijn, Marcin G. Fraczek, Jean‐Philippe Michel, Odile Sismeiro, Rachel Legendre, Hugo Varet, Thierry Fontaine, Michael Bromley, Jean‐Paul Latgé
Software Mentions: 2
Published: over 3 years ago

10.1128/mSphere.00762-20

Staphylococcus aureus Tolerance and Genomic Response to Photodynamic Inactivation
Cited by: 10
Author(s): Sara B. Snell, Ann Lindley Gill, Constantine G. Haidaris, Thomas H. Foster, Timothy M. Baran, Steven R. Gill
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12967-021-02814-5

Gut microbiota accelerates cisplatin-induced acute liver injury associated with robust inflammation and oxidative stress in mice
Cited by: 31
Author(s): Shenhai Gong, Ying Feng, Yunong Zeng, Huanrui Zhang, Meiping Pan, Fangjie He, Rong Wu, Jingrui Chen, Jiuling Lu, Siyou Zhang, Songhua Yuan, Xia Chen
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/8951907

Baicalin Represses C/EBPβ via Its Antioxidative Effect in Parkinson’s Disease
Cited by: 24
Author(s): Kecheng Lei, Yijue Shen, Yijing He, Liwen Zhang, Jingxing Zhang, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 2
Published: over 4 years ago

10.1016/j.immuni.2020.10.020

Antagonistic Inflammatory Phenotypes Dictate Tumor Fate and Response to Immune Checkpoint Blockade
Cited by: 113
Author(s): Eduardo Bonavita, Christian P. Bromley, Gustav Jonsson, Victoria S. Pelly, Sudhakar Sahoo, Katherine Walwyn-Brown, Sofia Mensurado, Agrin Moeini, Eimear Flanagan, Charlotte R. Bell, Shih‐Chieh Chiang, C.P. Chikkanna-Gowda, Neil C. Rogers, Bruno Silva‐Santos, Sébastien Jaillon, Alberto Mantovani, Caetano Reis e Sousa, Nadia Guerra, Daniel M. Davis, Santiago Zelenay
Software Mentions: 2
Published: about 4 years ago

10.7150/jca.59948

Low expression of CDHR1 is an independent unfavorable prognostic factor in glioma
Cited by: 7
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Yingying Lin, Ji Zhang, Hua Cao
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13019-020-01262-4

Network construction of aberrantly expressed miRNAs and their target mRNAs in ventricular myocardium with ischemia–reperfusion arrhythmias
Cited by: 5
Author(s): Jian Tang, Hong Gao, Yanqiu Li, Jing Song, Yue Feng, Guilong Wang, Youqin He
Software Mentions: 2
Published: over 4 years ago

10.1002/mgg3.934

MtDNA polymorphism analyses in the Chinese Mongolian group: Efficiency evaluation and further matrilineal genetic structure exploration
Cited by: 11
Author(s): Qiong Lan, Ting Xie, Xiaoye Jin, Yingying Fang, Shuyan Mei, Guang Yang, Bofeng Zhu
Software Mentions: 2
Published: about 5 years ago

10.1111/jcmm.14062

MiR‐552 promotes the proliferation, migration and <scp>EMT</scp> of hepatocellular carcinoma cells by inhibiting <scp>AJAP</scp>1 expression
Cited by: 31
Author(s): Wei-Qing Qu, Xinyuan Wen, Keli Su, Wei Gou
Software Mentions: 2
Published: almost 6 years ago

10.1002/mgg3.1235

A novel compound heterozygous missense mutation in ASNS broadens the spectrum of asparagine synthetase deficiency
Cited by: 5
Author(s): Chun Wang, Guiyuan He, Yakun Ge, Runjie Li, Zhenguo Li, Yongzhong Lin
Software Mentions: 2
Published: over 4 years ago

10.3390/molecules24010015

Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants
Cited by: 9
Author(s): He Su, Yang Chu, Junqi Bai, Lu Gong, Juan Huang, Wen Xu, Jing Zhang, Xiaohui Qiu, Jiang Xu, Zhixing Huang
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.15317

microRNA‐128‐3p overexpression inhibits breast cancer stem cell characteristics through suppression of Wnt signalling pathway by down‐regulating NEK2
Cited by: 29
Author(s): Yuanwen Chen, Nian Wu, Lei Liu, Dong Huang, Xinao Liu
Software Mentions: 2
Published: over 4 years ago

10.3390/molecules22122126

Biochemical, Physiological and Transcriptomic Comparison between Burley and Flue-Cured Tobacco Seedlings in Relation to Carbohydrates and Nitrate Content
Cited by: 17
Author(s): Yafei Li, Huijuan Yang, Dong Chil Chang, Shuzhen Lin, Yuqing Feng, Jingjing Li, Hongzhi Shi
Software Mentions: 2
Published: almost 7 years ago

10.3390/molecules26113172

Modification of Sensory Expression of 3-Isobutyl-2-methoxypyrazine in Wines through Blending Technique
Cited by: 6
Author(s): Mengqi Ling, Yu Zhou, Yi-Bin Lan, Chi Cheng, Guangfeng Wu, Chang‐Qing Duan, Ying Shi
Software Mentions: 2
Published: over 3 years ago

10.3390/molecules26061644

Anti-Cancer Effects of Carnosine—A Dipeptide Molecule
Cited by: 13
Author(s): Monica D. Prakash, Sarah Fraser, Jennifer C. Boer, Magdalena Plebanski, Barbora de Courten, Vasso Apostolopoulos
Software Mentions: 2
Published: over 3 years ago

10.1111/jcmm.15972

Role of miR‐218‐GREM1 axis in epithelial‐mesenchymal transition of oral squamous cell carcinoma: An in vivo and vitro study based on microarray data
Cited by: 7
Author(s): Yanpeng Wang, Yifeng Jiang, Long Chen
Software Mentions: 2
Published: about 4 years ago

10.1111/jcmm.16084

Herbal formula LLKL ameliorates hyperglycaemia, modulates the gut microbiota and regulates the gut‐liver axis in Zucker diabetic fatty rats
Cited by: 12
Author(s): Mei Li, Lei Ding, Yuli Hu, Lingling Qin, You Wu, Wei Liu, Lili Wu, Tonghua Liu
Software Mentions: 2
Published: about 4 years ago

10.1111/jcmm.15573

Human bone marrow mesenchymal stem cell‐derived extracellular vesicles impede the progression of cervical cancer via the miR‐144‐3p/CEP55 pathway
Cited by: 13
Author(s): Meng Qin, Baofang Zhang, Ying‐Ming Zhang, Shuyan Wang, Xiaohui Zhu
Software Mentions: 2
Published: almost 4 years ago

10.1111/mec.15734

Environmental DNA metabarcoding of cow dung reveals taxonomic and functional diversity of invertebrate assemblages
Cited by: 16
Author(s): Eva Egelyng Sigsgaard, Kent Olsen, Morten D. D. Hansen, Ole Ingemann Hansen, Toke T. Høye, Jens‐Christian Svenning, Philip Francis Thomsen
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.mcpro.2021.100126

Proteomics, Lipidomics, Metabolomics, and 16S DNA Sequencing of Dental Plaque From Patients With Diabetes and Periodontal Disease
Cited by: 15
Author(s): Katherine A. Overmyer, Timothy W. Rhoads, Anna E. Merrill, Zhan Ye, Michael S. Westphall, Amit Acharya, Sanjay Kumar Shukla, Joshua J. Coon
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms22115908

Smooth Muscle Specific Ablation of CXCL12 in Mice Downregulates CXCR7 Associated with Defective Coronary Arteries and Cardiac Hypertrophy
Cited by: 7
Author(s): Santhosh Kumar Ghadge, Moritz Messner, H Seiringer, Thomas Maurer, Simon Staggl, Tanja Zeller, Christian Müller, Daniela Börnigen, Wolfgang J. Weninger, Stefan H. Geyer, Sieghart Sopper, Anne Krogsdam, Gerhard Pölzl, Axel Bauer, Marc-Michael Zaruba
Software Mentions: 2
Published: over 3 years ago

10.1172/JCI128865

Innate and adaptive nasal mucosal immune responses following experimental human pneumococcal colonization
Cited by: 33
Author(s): Simon P. Jochems, Karin de Ruiter, Carla Solórzano, Astrid Voskamp, Elena Mitsi, Elissavet Nikolaou, Beatriz F. Carniel, Sherin Pojar, Esther L. German, Jesús Reiné, Alessandra Soares‐Schanoski, Helen Hill, Rachel Robinson, Angela Hyder-Wright, Caroline M. Weight, Pascal F. Durrenberger, Robert S. Heyderman, Stephen B. Gordon, Hermelijn H. Smits, Britta C. Urban, Jamie Rylance, Andrea Collins, Mark D. Wilkie, L Lazarova, Samuel Leong, Maria Yazdanbakhsh, Daniela M. Ferreira
Software Mentions: 2
Published: about 5 years ago

10.1172/JCI132139

Fetal alcohol spectrum disorder predisposes to metabolic abnormalities in adulthood
Cited by: 28
Author(s): Olivia Weeks, Gabriel D. Bossé, Isaac M. Oderberg, Sebastian Akle, Yariv Houvras, Paul J. Wrighton, Kyle A. LaBella, Isabelle Iversen, Sahar Tavakoli, Isaac Adatto, Arkadi Schwartz, Daan J. Kloosterman, Allison Tsomides, Michael E. Charness, Randall T. Peterson, Matthew L. Steinhauser, Pouneh K. Fazeli, Wolfram Goessling
Software Mentions: 2
Published: over 4 years ago

10.1002/jcla.23428

Hsa_circ_0023642 promotes proliferation, invasion, and migration of gastric cancer by sponging microRNA‐223
Cited by: 6
Author(s): Yi Zhang, Lei Xia, Jing Wu, Xinyu Xu, Gang Li
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms9081767

Different Responses of Microbiota across Intestinal Tract to Enterococcus faecium HDRsEf1 and Their Correlation with Inflammation in Weaned Piglets
Cited by: 7
Author(s): Junlan Zhou, Ji Luo, Sen Yang, Qiling Xiao, Xiliang Wang, Zutao Zhou, Yufei Xiao, Deshi Shi
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms9051027

Bioinformatics Analysis of Oral, Vaginal, and Rectal Microbial Profiles during Pregnancy: A Pilot Study on the Bacterial Co-Residence in Pregnant Women
Cited by: 5
Author(s): Megumi Fudaba, Toshikazu Kamiya, Daisuke Tachibana, Masayasu Koyama, Naoko Ohtani
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/5445349

Integrated Bioinformatics-Based Identification of Potential Diagnostic Biomarkers Associated with Diabetic Foot Ulcer Development
Cited by: 7
Author(s): Long Qian, Zhipeng Xia, Ming Zhang, Qi Han, Die Hu, Qiuying Sha, Dan Xing, Yan Chen, Xin Zhao
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms9091793

The Intestinal Bacterial Community and Functional Potential of Litopenaeus vannamei in the Coastal Areas of China
Cited by: 7
Author(s): Yimeng Cheng, Chaorong Ge, Wei Li, Huaiying Yao
Software Mentions: 2
Published: over 3 years ago

10.1093/jxb/ert437

Genome-wide identification, splicing, and expression analysis of the myosin gene family in maize (Zea mays)
Cited by: 13
Author(s): Guifeng Wang, Mingyu Zhong, Jiajia Wang, Jushan Zhang, Yiming Tang, Wang Gang, Rentao Song
Software Mentions: 2
Published: almost 11 years ago

10.1093/jxb/erw361

Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways
Cited by: 94
Author(s): Qili Fei, Yang Li, Wanqi Liang, Dabing Zhang, Blake C. Meyers
Software Mentions: 2
Published: about 8 years ago

10.1093/jxb/erz541

Mutations of two FERONIA-like receptor genes enhance rice blast resistance without growth penalty
Cited by: 35
Author(s): Zhuhong Yang, Junjie Xing, Long Wang, Yue Liu, Jianing Qu, Yang Tan, Xiqin Fu, Qinlu Lin, Huafeng Deng, Feng Yu
Software Mentions: 2
Published: almost 5 years ago

10.1093/jxb/erz552

Morphological and stage-specific transcriptome analyses reveal distinct regulatory programs underlying yam (Dioscorea alata L.) bulbil growth
Cited by: 13
Author(s): Zhigang Wu, Jiang Wu, Zheng-Ming Tao, Xiao-Jun Pan, Wenhui Yu, Huilian Huang
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.ppat.1004566

Cellular Oxidative Stress Response Controls the Antiviral and Apoptotic Programs in Dengue Virus-Infected Dendritic Cells
Cited by: 194
Author(s): David Olagnier, Suraj Peri, Courtney Steel, Nadine van Montfoort, Cindy Chiang, Vladimir Beljanski, Michael Slifker, Zhong He, Carmen N. Nichols, Rongtuan Lin, Siddharth Balachandran, John Hiscott
Software Mentions: 2
Published: almost 10 years ago

10.3390/microorganisms9061287

Comparative Exoproteome Analysis of Streptococcus suis Human Isolates
Cited by: 0
Author(s): Esther Prados de la Torre, Antonio Rodríguez-Franco, Manuel J. Rodríguez-Ortega
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms9081653

Uncovering the Worldwide Diversity and Evolution of the Virome of the Mosquitoes Aedes aegypti and Aedes albopictus
Cited by: 19
Author(s): Rhys Parry, Maddie E. James, Sassan Asgari
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22147508

4-Acetyl-Antroquinonol B Improves the Sensitization of Cetuximab on Both Kras Mutant and Wild Type Colorectal Cancer by Modulating the Expression of Ras/Raf/miR-193a-3p Signaling Axis
Cited by: 7
Author(s): Yi Cheng Chu, Tung Yao Tsai, Vijesh Kumar Yadav, Li Deng, Chun Chih Huang, Yew Min Tzeng, Chi Tai Yeh, Ming‐Yao Chen
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22157876

Males and Females Have Distinct Molecular Events in the Articular Cartilage during Knee Osteoarthritis
Cited by: 5
Author(s): Chenshuang Li, Zhong Zheng
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1009028

Vesicular trafficking permits evasion of cGAS/STING surveillance during initial human papillomavirus infection
Cited by: 31
Author(s): Brittany L. Uhlorn, Robert Jackson, Shuaizhi Li, Shauna M. Bratton, Koenraad Van Doorslaer, Samuel K. Campos
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms9091796

Metagenomic Analysis of Bacterial Communities in Agricultural Soils from Vietnam with Special Attention to Phosphate Solubilizing Bacteria
Cited by: 16
Author(s): Anna Hegyi, Tran Bao Khuyen Nguyen, Katalin Posta
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1009195

K18-hACE2 mice develop respiratory disease resembling severe COVID-19
Cited by: 200
Author(s): Claude Kwe Yinda, Julia R Port, Trenton Bushmaker, Irene Offei Owusu, Jyothi N. Purushotham, Victoria A. Avanzato, Robert J. Fischer, Jonathan Schulz, Myndi G. Holbrook, Madison J. Hebner, Rebecca Rosenke, Tina Thomas, Andrea Marzi, Sonja M. Best, Emmie de Wit, Carl Shaia, Neeltje van Doremalen, Vincent J. Munster
Software Mentions: 2
Published: almost 4 years ago

10.3390/microorganisms8040488

Pectin Degradation is an Important Determinant for Alfalfa Silage Fermentation through the Rescheduling of the Bacterial Community
Cited by: 15
Author(s): Bing Wang, Zhiqiang Sun, Zhu Yu
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms8020277

Diverse Microbial Community Profiles of Propionate-Degrading Cultures Derived from Different Sludge Sources of Anaerobic Wastewater Treatment Plants
Cited by: 16
Author(s): Pantakan Puengrang, Benjaphon Suraraksa, Peerada Prommeenate, Nimaradee Boonapatcharoen, Supapon Cheevadhanarak, Morakot Tanticharoen, Kanthida Kusonmano
Software Mentions: 2
Published: almost 5 years ago

10.3390/microorganisms9020235

Living Lithic and Sublithic Bacterial Communities in Namibian Drylands
Cited by: 6
Author(s): Steffi Genderjahn, Simon Lewin, Fabian Horn, Anja M. Schleicher, Kai Mangelsdorf, Dirk Wagner
Software Mentions: 2
Published: almost 4 years ago

10.1073/pnas.2009053117

Male reproductive aging arises via multifaceted mating-dependent sperm and seminal proteome declines, but is postponable in Drosophila
Cited by: 35
Author(s): Irem Sepil, Ben R. Hopkins, Rebecca Dean, Eleanor Bath, Solomon Friedman, B.F. Swanson, Harrison J Ostridge, Lucy Harper, Norene A. Buehner, Mariana F. Wolfner, Rebecca Konietzny, Marie‐Laëtitia Thézénas, Elizabeth Sandham, P. David Charles, Román Fischer, Josefa Steinhauer, Benedikt M. Kessler, Stuart Wigby
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-021-01060-7

Strain engraftment competition and functional augmentation in a multi-donor fecal microbiota transplantation trial for obesity
Cited by: 46
Author(s): Brooke C. Wilson, Tommi Vatanen, Thilini N. Jayasinghe, Karen S. W. Leong, José G. B. Derraik, Benjamin B. Albert, Valentina Chiavaroli, Darren Svirskis, Kathryn Beck, Cathryn A. Conlon, Yannan Jiang, William Schierding, David J. Holland, Wayne S. Cutfield, Justin M. O’Sullivan
Software Mentions: 2
Published: over 3 years ago

10.1007/s13238-019-00662-0

Contact-dependent delivery of IL-2 by dendritic cells to CD4 T cells in the contraction phase promotes their long-term survival
Cited by: 4
Author(s): Dan Tong, Li Zhang, Fei Ning, Ying Xu, Xiaoyu Hu, Yan Shi
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-017-0324-0

Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes
Cited by: 56
Author(s): Cheng Wang, Dan Dong, Peter James Strong, Wenjie Zhu, Zhongshui Ma, Yong Qin, Weixiang Wu
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms22168815

A New Glycosyltransferase Enzyme from Family 91, UGT91P3, Is Responsible for the Final Glucosylation Step of Crocins in Saffron (Crocus sativus L.)
Cited by: 13
Author(s): Alberto José López-Jiménez, Sarah Frusciante, Enrique Niza, Oussama Ahrazem, Ángela Rubio-Moraga, Gianfranco Diretto, Lourdes Gómez-Gómez
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-016-0215-9

The developing hypopharyngeal microbiota in early life
Cited by: 41
Author(s): Martin Steen Mortensen, Asker Brejnrod, Michael Roggenbuck, Waleed Abu Al‐Soud, Christina Balle, Karen A. Krogfelt, Jakob Stokholm, Jonathan Thorsen, Johannes Waage, Morten Arendt Rasmussen, Hans Bisgaard, Søren J. Sørensen
Software Mentions: 2
Published: about 8 years ago

10.1002/mbo3.673

High‐production dairy cattle exhibit different rumen and fecal bacterial community and rumen metabolite profile than low‐production cattle
Cited by: 33
Author(s): Yingyu Mu, Xueyan Lin, Zhonghua Wang, Qiuling Hou, Yun Wang, Zhiyong Hu
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms22179553

A Transcriptomic Meta-Analysis Shows Lipid Metabolism Dysregulation as an Early Pathological Mechanism in the Spinal Cord of SOD1 Mice
Cited by: 15
Author(s): Luis C. Fernández-Beltrán, Juan Miguel Godoy-Corchuelo, Maria Losa-Fontangordo, Debbie Williams, Jorge Matías‐Guiu, Silvia Corrochano
Software Mentions: 2
Published: about 3 years ago

10.15698/mic2018.05.630

Spontaneous mutations in CYC8 and MIG1 suppress the short chronological lifespan of budding yeast lacking SNF1/AMPK
Cited by: 11
Author(s): Nazif Maqani, Ryan D. Fine, Mehreen Shahid, Mingguang Li, Elisa Enriquez-Hesles, Jeffrey S. Smith
Software Mentions: 2
Published: over 6 years ago

10.1186/1742-4690-10-160

Transcriptional profiling reveals molecular signatures associated with HIV permissiveness in Th1Th17 cells and identifies Peroxisome Proliferator-Activated Receptor Gammaas an intrinsic negative regulator of viral replication
Cited by: 44
Author(s): Annie Bernier, Aurélie Cleret-Buhot, Yuwei Zhang, Jean-Philippe Goulet, Patricia Monteiro, Annie Gosselin, Sandrina DaFonseca, Vanessa Sue Wacleche, Mohammad Ali Jenabian, Jean Pierre Routy, Cécile Tremblay, Petronela Ancuța
Software Mentions: 2
Published: about 11 years ago

10.3390/metabo11080487

Antibiotic-Induced Dysbiosis of Microbiota Promotes Chicken Lipogenesis by Altering Metabolomics in the Cecum
Cited by: 15
Author(s): Tao Zhang, Hao Ding, Lan Chen, Yueyue Lin, Yongshuang Gong, Zhiming Pan, Genxi Zhang, Kaizhou Xie, Guojun Dai, Jinyu Wang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12284-021-00459-y

Genomics Analyses Reveal Unique Classification, Population Structure and Novel Allele of Neo-Tetraploid Rice
Cited by: 12
Author(s): Hang Yu, Qihang Li, Yudi Li, Haijun Yang, Zengjun Lu, Jinwen Wu, Zemin Zhang, Muhammad Qasim Shahid, Xiangdong Liu
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12284-021-00524-6

Metabolomic and Transcriptomic Changes Induced by Potassium Deficiency During Sarocladium oryzae Infection Reveal Insights into Rice Sheath Rot Disease Resistance
Cited by: 9
Author(s): Jianglin Zhang, Zhifeng Lu, Tao Ren, Rihuan Cong, Xiaokun Li
Software Mentions: 2
Published: about 3 years ago

10.3390/metabo11080490

Exploring Genotype-by-Environment Interactions of Chemical Composition of Raspberry by Using a Metabolomics Approach
Cited by: 10
Author(s): Sara Durán-Soria, Delphine M. Pott, Frank Will, Jennifer Mesa‐Marín, M. Lewandowski, Karolina Celejewska, A. Masny, E. Żurawicz, Nikki Jennings, Anita Sønsteby, Erika Krüger, Sonia Osorio
Software Mentions: 2
Published: over 3 years ago

10.1126/sciadv.abg4081

Immune checkpoint inhibitors increase T cell immunity during SARS-CoV-2 infection
Cited by: 26
Author(s): Nader Yatim, Jérémy Boussier, P. Tétu, Nikaïa Smith, Timothée Bruel, Bruno Charbit, Laura Barnabei, Aurélien Corneau, Laetitia Da Meda, Clara Allayous, Barouyr Baroudjian, Majdi Jebali, F. Herms, Ludivine Grzelak, Isabelle Staropoli, Vincent Calmettes, Jérôme Hadjadj, Olivier Peyrony, C. Cassius, Jérôme LeGoff, N. Kramkimel, S. Aractingi, Magnus Fontes, Catherine Blanc, Frédéric Rieux‐Laucat, Olivier Schwartz, Benjamin Terrier, Darragh Duffy, Célèste Lebbe
Software Mentions: 2
Published: over 3 years ago

10.3390/metabo9050082

Multi-Omics Analyses Detail Metabolic Reprogramming in Lipids, Carnitines, and Use of Glycolytic Intermediates between Prostate Small Cell Neuroendocrine Carcinoma and Prostate Adenocarcinoma
Cited by: 24
Author(s): Bei Gao, Hui Wen Lue, Jennifer Podolak, Sili Fan, Ying Zhang, Archana Serawat, Joshi J. Alumkal, Oliver Fiehn, George V. Thomas
Software Mentions: 2
Published: over 5 years ago

10.1038/sdata.2015.30

Comparative, transcriptome analysis of self-organizing optic tissues
Cited by: 10
Author(s): Munazah Andrabi, Shigehiro Kuraku, Nozomu Takata, Yoshiki Sasai, Nick R. Love
Software Mentions: 2
Published: over 9 years ago

10.3390/metabo10080325

Comparative Metabolomic Analysis of Dendrobium officinale under Different Cultivation Substrates
Cited by: 23
Author(s): Si-Min Zuo, Hai‐Dong Yu, Weimin Zhang, Qiuping Zhong, Wenxue Chen, Yong‐Huan Yun, Haiming Chen
Software Mentions: 2
Published: over 4 years ago

10.1038/srep11606

Microbial population dynamics in response to Pectobacterium atrosepticum infection in potato tubers
Cited by: 45
Author(s): Viia Kõiv, Märt Roosaare, Eve Vedler, Paula Ann Kivistik, Kristel Toppi, David W. Schryer, Maido Remm, Tanel Tenson, Andres Mäe
Software Mentions: 2
Published: over 9 years ago

10.1038/srep12601

Inner workings of thrombolites: spatial gradients of metabolic activity as revealed by metatranscriptome profiling
Cited by: 42
Author(s): Jennifer M. Mobberley, Christina L. Khodadad, Pieter T. Visscher, R. Pamela Reid, Paul D. Hagan, Jamie S. Foster
Software Mentions: 2
Published: over 9 years ago

10.1021/acs.jproteome.1c00378

Evaluation of Spin Columns for Human Plasma Depletion to Facilitate MS-Based Proteomics Analysis of Plasma
Cited by: 21
Author(s): Xiaofang Cao, AnnSofi Sandberg, J.E. Araújo, Filip Cvetkovski, Erik Berglund, Lars E. Eriksson, Maria Pernemalm
Software Mentions: 2
Published: over 3 years ago

10.1186/s42523-020-00041-9

Microbiome–host co-oscillation patterns in remodeling of colonic homeostasis during adaptation to a high-grain diet in a sheep model
Cited by: 8
Author(s): Limei Lin, Yue Wang, Liping Xu, Junhua Liu, Weiyun Zhu, Shengyong Mao
Software Mentions: 2
Published: over 4 years ago

10.1038/srep20602

Intestinal Microbiota Distinguish Gout Patients from Healthy Humans
Cited by: 213
Author(s): Zhuang Guo, Jiachao Zhang, Zhanli Wang, Kay Ying Ang, Shi Huang, Qiangchuan Hou, Xiaoquan Su, Jun Qiao, Yi Zheng, Lifeng Wang, Eileen Y. Koh, Ho Danliang, Jian Xu, Yuan Kun Lee, Heping Zhang
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep22919

Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans
Cited by: 27
Author(s): Salah Zangenah, Nasir M. Abbasi, Anders F. Andersson, Peter Bergman
Software Mentions: 2
Published: over 8 years ago

10.1038/srep24984

Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids
Cited by: 29
Author(s): Dejun Li, Rizhong Zeng, Yan Li, Manman Zhao, Jinquan Chao, Li Yu, Kai Wang, Lihuang Zhu, Weimin Tian, Chengzhi Liang
Software Mentions: 2
Published: over 8 years ago

10.1038/srep27256

Induction of Germ Cell-like Cells from Porcine Induced Pluripotent Stem Cells
Cited by: 33
Author(s): Hanning Wang, Jinzhu Xiang, Wei Zhang, Junhong Li, Qingqing Wei, Zhong Liu, Hongsheng Ouyang, Jianyong Han
Software Mentions: 2
Published: over 8 years ago

10.1111/acel.13446

The intrinsic chaperone network of Arabidopsis stem cells confers protection against proteotoxic stress
Cited by: 11
Author(s): Ernesto Llamas, Salvador Torres‐Montilla, Hyun Ju Lee, M. Victoria Barja, Elena Schlimgen, Nick Dunken, Prerana Wagle, Wolfgang Werr, Alga Zuccaro, Manuel Rodrı́guez-Concepción, David Vı́lchez
Software Mentions: 2
Published: over 3 years ago

10.3390/medicina57030261

Identification of Breast Cancer Subtype-Specific Biomarkers by Integrating Copy Number Alterations and Gene Expression Profiles
Cited by: 6
Author(s): Claudia Cava, Mirko Pisati, Marco Frasca, Isabella Castiglioni
Software Mentions: 2
Published: over 3 years ago

10.1038/srep32524

Metagenomic approach reveals microbial diversity and predictive microbial metabolic pathways in Yucha, a traditional Li fermented food
Cited by: 61
Author(s): Jiachao Zhang, Xiaoru Wang, Dongxue Huo, Wu Li, Qisong Hu, Chang Xu, Sixin Liu, Congfa Li
Software Mentions: 2
Published: over 8 years ago

10.18632/aging.203439

Mediation of circ_RPPH1 on miR-146b-3p/E2F2 pathway to hinder the growth and metastasis of breast carcinoma cells
Cited by: 6
Author(s): Hai Feng, Shou-Zhan Sun, Cheng Fang, Nianqu Zhang
Software Mentions: 2
Published: over 3 years ago

10.1515/biol-2021-0052

Potential prognostic markers and significant lncRNA–mRNA co-expression pairs in laryngeal squamous cell carcinoma
Cited by: 4
Author(s): Junguo Wang, Dingding Liu, Yajun Gu, Han Zhou, Hui Li, Xiaohui Shen, Xiaoyun Qian
Software Mentions: 2
Published: almost 4 years ago

Projects: cran: pheatmap

Papers Mentioning pheatmap 2,572