cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1111/jcmm.16264

Construction of co‐expression modules related to survival by WGCNA and identification of potential prognostic biomarkers in glioblastoma
Cited by: 22
Author(s): Jing Zhou, Hao Guo, Likun Liu, Shulan Hao, Zhi Guo, Fupeng Zhang, Yu Tang Gao, Zhi Wang, Weiwei Zhang
Software Mentions: 3
Published: over 5 years ago

10.1128/mSystems.00181-19

Proteomic Response of Three Marine Ammonia-Oxidizing Archaea to Hydrogen Peroxide and Their Metabolic Interactions with a Heterotrophic Alphaproteobacterium
Cited by: 41
Author(s): Barbara Bayer, Claus Pelikan, Meriel J. Bittner, Thomas Reinthaler, Martin Könneke, Gerhard J. Herndl, Pierre Offre
Software Mentions: 3
Published: about 7 years ago

10.1128/mSystems.00293-19

A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children
Cited by: 20
Author(s): Zheng Sun, Shi Huang, Pengfei Zhu, Feng Yue, Helen Zhao, Ming Yang, Yinong Niu, Gongchao Jing, Xiaoquan Su, Huiying Li, Chris Callewaert, Rob Knight, Jiquan Liu, Ed Smith, Karl Wei, Jian Xu
Software Mentions: 3
Published: about 7 years ago

10.1128/mSystems.00412-20

Shifts in the Bacterial Population and Ecosystem Functions in Response to Vegetation in the Yellow River Delta Wetlands
Cited by: 17
Author(s): Jia‐Ning Wang, Jingjing Wang, Zhaoke Zheng, Zhifeng Li, Zhiguo Zhang, Decun Zhao, Lidong Wang, Lu Feng, Yuezhong Li
Software Mentions: 3
Published: about 6 years ago

10.1002/2211-5463.12897

A digital mRNA expression signature to classify challenging Spitzoid melanocytic neoplasms
Cited by: 1
Author(s): Lisa M. Hillen, Milan S. Geybels, Ivelina Spassova, Juergen C. Becker, Thilo Gambichler, Marjan Garmyn, Axel zur Hausen, Joost van den Oord, Véronique Winnepenninckx
Software Mentions: 3
Published: over 6 years ago

10.3390/nu13020637

Sex-Dependent Effects of 7,8-Dihydroxyflavone on Metabolic Health Are Associated with Alterations in the Host Gut Microbiome
Cited by: 8
Author(s): Pulkit Sharma, Guojun Wu, Deeptha Kumaraswamy, Natalie Burchat, Hong Ye, Yongjia Gong, Liping Zhao, Yan Y. Lam, Harini Sampath
Software Mentions: 3
Published: over 5 years ago

10.1002/2211-5463.13078

Identification of key modules and hub genes in glioblastoma multiforme based on co‐expression network analysis
Cited by: 5
Author(s): Chun Li, Bangming Pu, Lianzhi Gu, Mingwei Zhang, Hongping Shen, Yuan Yuan, Lishang Liao
Software Mentions: 3
Published: over 5 years ago

10.3389/fcell.2020.615671

Identification of lncRNA-mRNA Regulatory Module to Explore the Pathogenesis and Prognosis of Melanoma
Cited by: 17
Author(s): Jiaqi Zhang, Hui Liu, Wenhao Zhang, Yinfang Li, Zhipeng Fan, Hua Jiang, Judong Luo
Software Mentions: 3
Published: over 5 years ago

10.1098/rsos.210113

Gene expression associated with disease resistance and long-term growth in a reef-building coral
Cited by: 9
Author(s): Emma R. Kelley, Robin S. Sleith, Mikhail V. Matz, Rachel M. Wright
Software Mentions: 3
Published: over 5 years ago

10.3389/fcell.2020.582282

Increased Expression of Zyxin and Its Potential Function in Androgenetic Alopecia
Cited by: 5
Author(s): Qingmei Liu, Xiaofeng Shi, Yue Zhang, Yan Huang, Kai Yang, Yulong Tang, Yanyun Ma, Yuting Zhang, Ji'an Wang, Li Zhang, Qi Zhang, Lei Xiao, Jinran Lin, Jiucun Wang, Wenyu Wu
Software Mentions: 3
Published: over 5 years ago

10.15252/embr.201948375

Class I <scp>HDAC</scp> inhibitors enhance <scp>YB</scp> ‐1 acetylation and oxidative stress to block sarcoma metastasis
Cited by: 63
Author(s): Amal M. El-Naggar, Syam Prakash Somasekharan, Yemin Wang, Hongwei Cheng, Gian Luca Negri, Melvin Pan, Xue Q. Wang, Alberto Delaidelli, Bo Rafn, Jordan Cran, Fan Zhang, Haifeng Zhang, Shane Colborne, Martin Gleave, Anna Mandinova, Nancy Kedersha, Christopher S. Hughes, Didier Surdez, Olivier Delattre, Yuzhuo Wang, David G. Huntsman, Gregg B. Morin, Poul H. Sorensen
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12967-020-02255-6

Development and validation of a novel immune-related prognostic model in hepatocellular carcinoma
Cited by: 60
Author(s): Zheng Wang, Jie Zhu, Yongjuan Liu, Changhong Liu, Wenqi Wang, Fengzhe Chen, Lixian Ma
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.51850

Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets
Cited by: 11
Author(s): David M. Curran, Alexandra Grote, Nirvana Nursimulu, Adam Geber, Denis Voronin, Drew R. Jones, Elodie Ghedin, John Parkinson
Software Mentions: 3
Published: about 6 years ago

10.7150/ijbs.41293

Potential Crosstalk between Liver and Extra-liver Organs in Mouse Models of Acute Liver Injury
Cited by: 12
Author(s): Yufan Zheng, Baiping Cui, Wei Sun, Sining Wang, Xu Huang, Han Gao, Fei Gao, Cheng Qian, Limin Lü, Yanpeng An, Xiaobo Li, Ning Sun
Software Mentions: 3
Published: over 6 years ago

10.1186/s12958-021-00801-5

Trophoblast derived extracellular vesicles specifically alter the transcriptome of endometrial cells and may constitute a critical component of embryo-maternal communication
Cited by: 19
Author(s): Kasun Godakumara, James Ord, Freddy Lättekivi, Keerthie Dissanayake, Janeli Viil, Nageswara Rao Boggavarapu, Omid R. Faridani, Kersti Jääger, Agne Velthut-Meikas, Ülle Jaakma, Andres Salumets, Alireza Fazeli
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2021.605296

Prediction of Post-hepatectomy Liver Failure in Patients With Hepatocellular Carcinoma Based on Radiomics Using Gd-EOB-DTPA-Enhanced MRI: The Liver Failure Model
Cited by: 15
Author(s): Yuyan Chen, Zelong Liu, Yun Xian Mo, Bin Li, Qian Zhou, Sui Peng, Shaoqiang Li, Ming Kuang
Software Mentions: 3
Published: over 5 years ago

10.21203/rs.3.rs-86169/v1

Clofazimine is a broad-spectrum coronavirus inhibitor that antagonizes SARS-CoV-2 replication in primary human cell culture and hamsters
Cited by: 11
Author(s): Shuofeng Yuan, Xin Yin, Xiangzhi Meng, Jasper Fuk Woo Chan, Zi‐Wei Ye, Laura Riva, Lars Pache, Chris Chun-Yiu Chan, Pok-Man Lai, Chris Chun Yiu Chan, Vincent Kwok Man Poon, Naoko Matsunaga, Yuan Pu, Chun-Kit Yuen, Jianli Cao, Ronghui Liang, Kaiming Tang, Sheng Li, Yushen Du, Wan Xu, Kong-Hung Sze, Jinxia Zhang, Hin Chu, Kin‐Hang Kok, Kelvin Kai-Wang To, Dong-Yan Jin, Ren Sun, Sumit K. Chanda, Kwok‐Yung Yuen
Software Mentions: 3
Published: almost 6 years ago

10.1002/ece3.5638

Effect of coupled reduced irrigation and nitrogen fertilizer on soil mite community composition in a wheat field
Cited by: 9
Author(s): Kewei Chen, Fang Ouyang, Xianghui Liu, Ji Ma, Fenghua Zhao, Zhu Ouyang, Feng Ge
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00330-021-07910-0

Prediction of tumor response via a pretreatment MRI radiomics-based nomogram in HCC treated with TACE
Cited by: 47
Author(s): Chunli Kong, Zhongwei Zhao, Weiyue Chen, Xiuling Lv, Shu Gao, Miaoqing Ye, Jingjing Shen, Ying Xiao, Qiaoyou Weng, Wen Jian Weng, Shiji Fang, Minjiang Chen, Jianfei Tu, Jiansong Ji
Software Mentions: 3
Published: over 5 years ago

10.7150/jca.50472

High Expression of RhoBTB3 Predicts Favorable Chemothrapy Outcomes in non-M3 Acute Myeloid Leukemia
Cited by: 3
Author(s): Shuanghui Yang, Wei Liu, Jie Peng, Yajing Xu, Yanfeng Liu, Yan Li, Minyuan Peng, Zhao Ouyang, Cong Chen, Enyi Liu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12931-019-0995-0

Identification of differentially expressed proteins in the injured lung from zinc chloride smoke inhalation based on proteomics analysis
Cited by: 13
Author(s): Xiaowei Xie, Jiemin Zhao, Lei Xie, Haiyan Wang, Yan Xiao, Yingjia She, Lingyun Ma
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.43785

Predominance of cis-regulatory changes in parallel expression divergence of sticklebacks
Cited by: 73
Author(s): Jukka‐Pekka Verta, Felicity C. Jones
Software Mentions: 3
Published: over 7 years ago

10.3389/fmolb.2021.640387

Lipidomic Perturbations in Cynomolgus Monkeys are Regulated by Thyroid Stimulating Hormone
Cited by: 2
Author(s): Tao Xu, Yi-Yan Yang, Xing Huang, Jianhong Ren, Ting Xu, Wei Xie
Software Mentions: 3
Published: over 5 years ago

10.3390/nu13061808

Short- and Branched-Chain Fatty Acids as Fecal Markers for Microbiota Activity in Vegans and Omnivores
Cited by: 24
Author(s): Iris Trefflich, Suzanne W. Dietrich, Annett Braune, Klaus Abraham, Cornelia Weikert
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2020.553628

Up-regulation of L Antigen Family Member 3 Associates With Aggressive Progression of Breast Cancer
Cited by: 3
Author(s): Xubin Dong, Shihui Lv, Di Gu, Xiaohua Zhang, Zhiqiang Ye
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.551160

Analysis of the EGFR Amplification and CDKN2A Deletion Regulated Transcriptomic Signatures Reveals the Prognostic Significance of SPATS2L in Patients With Glioma
Cited by: 16
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2020.597569

Identification and Validation of an Autophagy-Related lncRNA Signature for Patients With Breast Cancer
Cited by: 13
Author(s): Ruyue Zhang, Qingwen Zhu, Dengke Yin, Zichang Yang, Jiahao Guo, Jingmin Zhang, Yubing Zhou, Jane Yu
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2019.01424

The Diversity and Geographic Distribution of Cultivable Bacillus-Like Bacteria Across Black Soils of Northeast China
Cited by: 17
Author(s): Junjie Liu, Xiao Yang Cui, Zhuxiu Liu, Guo Zhaokui, Zhenhua Yu, Qin Yao, Yueyu Sui, Jian Jin, Xiaobing Liu
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2018.02023

Vertical Distribution of Microbial Eukaryotes From Surface to the Hadal Zone of the Mariana Trench
Cited by: 34
Author(s): Zhimeng Xu, Min Wang, Wenxue Wu, Yifan Li, Qian Liu, Yuye Han, Hongbing Shao, Andrew McMinn, Hongbin Liu
Software Mentions: 3
Published: about 8 years ago

10.7554/eLife.56095

Inflammatory osteolysis is regulated by site-specific ISGylation of the scaffold protein NEMO
Cited by: 16
Author(s): Naga Suresh Adapala, Gaurav Swarnkar, Manoj Arra, Jie Shen, Gabriel Mbalaviele, Ke Ke, Yousef Abu‐Amer
Software Mentions: 3
Published: over 6 years ago

10.1002/2211-5463.12737

Transcriptome analysis of roots from resistant and susceptible rice varieties infected with Hirschmanniella mucronata
Cited by: 7
Author(s): Xiaotang Sun, Lei Zhang, Ziqing Tang, Xugen Shi, Jian Ma, Ruqiang Cui
Software Mentions: 3
Published: almost 7 years ago

10.7150/jca.41123

Prognostic significance of age related genes in patients with lower grade glioma
Cited by: 15
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 3
Published: over 6 years ago

10.1002/fsn3.2291

Dynamic changes of volatile compounds and bacterial diversity during fourth to seventh rounds of Chinese soy sauce aroma liquor
Cited by: 12
Author(s): Lingchang Wang, Kai Zhong, Aimin Luo, Jian Chen, Yi Shen, Xi Wang, Qiang He, Hong Gao
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.634617

CD96 Correlates With Immune Infiltration and Impacts Patient Prognosis: A Pan-Cancer Analysis
Cited by: 31
Author(s): Wenrui Ye, Cong Luo, Fangkun Liu, Zhixiong Liu, Fenghua Chen
Software Mentions: 3
Published: over 5 years ago

10.1038/s41597-020-00754-1

Transcriptome dataset of human corneal endothelium based on ribosomal RNA-depleted RNA-Seq data
Cited by: 13
Author(s): Yoshiyuki Tokuda, Naoki Okumura, Yuya Komori, Naoya Hanada, Kei Tashiro, Noriko Koizumi, Masakazu Nakano
Software Mentions: 3
Published: almost 6 years ago

10.1002/fsn3.1841

A comparative UPLC‐Q‐Orbitrap‐MS untargeted metabolomics investigation of different parts of Clausena lansium (Lour.) Skeels
Cited by: 15
Author(s): Ruiyi Fan, Cheng Peng, Xinxin Zhang, Diyang Qiu, Genlin Mao, Yusheng Lu, Jiwu Zeng
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.61736

Paternal multigenerational exposure to an obesogenic diet drives epigenetic predisposition to metabolic diseases in mice
Cited by: 22
Author(s): Georges Raad, Fabrizio Serra, Luc Martin, Marie-Alix Derieppe, Jérôme Gilleron, Vera L. Costa, Didier F. Pisani, Ez-Zoubir Amri, Michèle Trabucchi, Valérie Grandjean
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.ppat.1008006

Shigella sonnei infection of zebrafish reveals that O-antigen mediates neutrophil tolerance and dysentery incidence
Cited by: 17
Author(s): Vincenzo Torraca, Myrsini Kaforou, Jayne Watson, Gina Duggan, Hazel Guerrero-Gutierrez, Sina Krokowski, Michael Hollinshead, Tom Clarke, Rafal Mostowy, Gillian S. Tomlinson, Vanessa Sancho‐Shimizu, Abigail Clements, Serge Mostowy
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.693353

Identification of Key Genes Related to CD8+ T-Cell Infiltration as Prognostic Biomarkers for Lung Adenocarcinoma
Cited by: 6
Author(s): Minjun Du, Yicheng Liang, Zixu Liu, Xingkai Li, Mei Liang, Boxuan Zhou, Yushun Gao
Software Mentions: 3
Published: almost 5 years ago

10.1038/srep12978

From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization
Cited by: 42
Author(s): Xiaofang Li, Philip L. Bond, Joy D. Van Nostrand, Jizhong Zhou, Longbin Huang
Software Mentions: 3
Published: about 11 years ago

10.3389/fbioe.2020.00930

Immune Cytolytic Activity as an Indicator of Immune Checkpoint Inhibitors Treatment for Prostate Cancer
Cited by: 18
Author(s): Zhe Gao, Yiran Tao, Yue‐Yun Lai, Qiong Wang, Zean Li, Shirong Peng, Junxiu Chen, Wenli Cai, Kaiwen Li, Hai Huang
Software Mentions: 3
Published: about 6 years ago

10.3389/fneur.2020.580997

Electroacupuncture Alleviates Mechanical Allodynia of a Rat Model of CRPS-I and Modulates Gene Expression Profiles in Dorsal Root Ganglia
Cited by: 7
Author(s): Jie Wang, Xiaoli Zheng, Boyu Liu, Chengyu Yin, Ruixiang Chen, Xiaojie Li, Yuanyuan Li, Huimin Nie, Danyi Zeng, Xiaofen He, Yongliang Jiang, Jianqiao Fang
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.15972

Role of miR‐218‐GREM1 axis in epithelial‐mesenchymal transition of oral squamous cell carcinoma: An in vivo and vitro study based on microarray data
Cited by: 7
Author(s): Yanpeng Wang, Yifeng Jiang, Long Chen
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.16084

Herbal formula LLKL ameliorates hyperglycaemia, modulates the gut microbiota and regulates the gut‐liver axis in Zucker diabetic fatty rats
Cited by: 12
Author(s): Mei Li, Lei Ding, Yuli Hu, Lingling Qin, You Wu, Wei Liu, Lili Wu, Tonghua Liu
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.15573

Human bone marrow mesenchymal stem cell‐derived extracellular vesicles impede the progression of cervical cancer via the miR‐144‐3p/CEP55 pathway
Cited by: 13
Author(s): Meng Qin, Baofang Zhang, Ying‐Ming Zhang, Shuyan Wang, Xiaohui Zhu
Software Mentions: 2
Published: over 5 years ago

10.3389/fnmol.2019.00196

Differential Expression Profiles and Functional Prediction of Circular RNAs and Long Non-coding RNAs in the Hippocampus of Nrf2-Knockout Mice
Cited by: 15
Author(s): Runjiao Zhang, Yan Li, Qing Liu, Yanjing Gao, Juan Du, Jun Ma, Shao-Guang Sun, Lei Wang
Software Mentions: 2
Published: about 7 years ago

10.3389/fmolb.2021.673044

Altered Glycosylation in the Aging Heart
Cited by: 6
Author(s): Patricia Franzka, Lynn Krüger, Mona K Schurig, Maja Olecka, Steve Hoffmann, Véronique Blanchard, Christian A. Hübner
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.683240

Immunological Significance of Prognostic DNA Methylation Sites in Hepatocellular Carcinoma
Cited by: 12
Author(s): Qianhui Xu, Yuanbo Hu, Shaohuai Chen, Yulun Zhu, Siwei Li, Feng Shen, Yifan Guo, Tao Sun, Xiaoyu Chen, Jinpeng Jiang, Wen Huang
Software Mentions: 2
Published: over 5 years ago

10.1172/JCI128865

Innate and adaptive nasal mucosal immune responses following experimental human pneumococcal colonization
Cited by: 33
Author(s): Simon P. Jochems, Karin de Ruiter, Carla Solórzano, Astrid Voskamp, Elena Mitsi, Elissavet Nikolaou, Beatriz F. Carniel, Sherin Pojar, Esther L. German, Jesús Reiné, Alessandra Soares‐Schanoski, Helen Hill, Rachel Robinson, Angela Hyder-Wright, Caroline M. Weight, Pascal F. Durrenberger, Robert S. Heyderman, Stephen B. Gordon, Hermelijn H. Smits, Britta C. Urban, Jamie Rylance, Andrea Collins, Mark D. Wilkie, L Lazarova, Samuel Leong, Maria Yazdanbakhsh, Daniela M. Ferreira
Software Mentions: 2
Published: almost 7 years ago

10.1172/JCI132139

Fetal alcohol spectrum disorder predisposes to metabolic abnormalities in adulthood
Cited by: 28
Author(s): Olivia Weeks, Gabriel D. Bossé, Isaac M. Oderberg, Sebastian Akle, Yariv Houvras, Paul J. Wrighton, Kyle A. LaBella, Isabelle Iversen, Sahar Tavakoli, Isaac Adatto, Arkadi Schwartz, Daan J. Kloosterman, Allison Tsomides, Michael E. Charness, Randall T. Peterson, Matthew L. Steinhauser, Pouneh K. Fazeli, Wolfram Goessling
Software Mentions: 2
Published: over 6 years ago

10.1002/jcla.23428

Hsa_circ_0023642 promotes proliferation, invasion, and migration of gastric cancer by sponging microRNA‐223
Cited by: 6
Author(s): Yi Zhang, Lei Xia, Jing Wu, Xinyu Xu, Gang Li
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2019.02629

Transcriptomic Profile and Sexual Reproduction-Relevant Genes of Alexandrium minutum in Response to Nutritional Deficiency
Cited by: 12
Author(s): Fan Qiang Meng, Jun Song, Jin Zhou, Zhong Hua Cai
Software Mentions: 2
Published: almost 7 years ago

10.1155/2021/5445349

Integrated Bioinformatics-Based Identification of Potential Diagnostic Biomarkers Associated with Diabetic Foot Ulcer Development
Cited by: 7
Author(s): Long Qian, Zhipeng Xia, Ming Zhang, Qi Han, Die Hu, Qiuying Sha, Dan Xing, Yan Chen, Xin Zhao
Software Mentions: 2
Published: about 5 years ago

10.1093/jxb/ert437

Genome-wide identification, splicing, and expression analysis of the myosin gene family in maize (Zea mays)
Cited by: 13
Author(s): Guifeng Wang, Mingyu Zhong, Jiajia Wang, Jushan Zhang, Yiming Tang, Wang Gang, Rentao Song
Software Mentions: 2
Published: over 12 years ago

10.1093/jxb/erw361

Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways
Cited by: 94
Author(s): Qili Fei, Yang Li, Wanqi Liang, Dabing Zhang, Blake C. Meyers
Software Mentions: 2
Published: almost 10 years ago

10.1093/jxb/erz541

Mutations of two FERONIA-like receptor genes enhance rice blast resistance without growth penalty
Cited by: 35
Author(s): Zhuhong Yang, Junjie Xing, Long Wang, Yue Liu, Jianing Qu, Yang Tan, Xiqin Fu, Qinlu Lin, Huafeng Deng, Feng Yu
Software Mentions: 2
Published: over 6 years ago

10.1093/jxb/erz552

Morphological and stage-specific transcriptome analyses reveal distinct regulatory programs underlying yam (Dioscorea alata L.) bulbil growth
Cited by: 13
Author(s): Zhigang Wu, Jiang Wu, Zheng-Ming Tao, Xiao-Jun Pan, Wenhui Yu, Huilian Huang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1004566

Cellular Oxidative Stress Response Controls the Antiviral and Apoptotic Programs in Dengue Virus-Infected Dendritic Cells
Cited by: 194
Author(s): David Olagnier, Suraj Peri, Courtney Steel, Nadine van Montfoort, Cindy Chiang, Vladimir Beljanski, Michael Slifker, Zhong He, Carmen N. Nichols, Rongtuan Lin, Siddharth Balachandran, John Hiscott
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2017.00484

Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China
Cited by: 21
Author(s): Jing Li, Qiangchuan Hou, Jiachao Zhang, Haiyan Xu, Zhihong Sun, Bilige Menghe, Heping Zhang
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1009028

Vesicular trafficking permits evasion of cGAS/STING surveillance during initial human papillomavirus infection
Cited by: 31
Author(s): Brittany L. Uhlorn, Robert Jackson, Shuaizhi Li, Shauna M. Bratton, Koenraad Van Doorslaer, Samuel K. Campos
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1009195

K18-hACE2 mice develop respiratory disease resembling severe COVID-19
Cited by: 200
Author(s): Claude Kwe Yinda, Julia R Port, Trenton Bushmaker, Irene Offei Owusu, Jyothi N. Purushotham, Victoria A. Avanzato, Robert J. Fischer, Jonathan Schulz, Myndi G. Holbrook, Madison J. Hebner, Rebecca Rosenke, Tina Thomas, Andrea Marzi, Sonja M. Best, Emmie de Wit, Carl Shaia, Neeltje van Doremalen, Vincent J. Munster
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.01274

5-Aminosalicylic Acid Alters the Gut Bacterial Microbiota in Patients With Ulcerative Colitis
Cited by: 89
Author(s): Jianming Xu, Ning Chen, Zhe Wu, Yang Song, Yifan Zhang, Na Wu, Feng Zhang, Xinhua Ren, Yulan Liu
Software Mentions: 2
Published: about 8 years ago

10.1073/pnas.2009053117

Male reproductive aging arises via multifaceted mating-dependent sperm and seminal proteome declines, but is postponable in Drosophila
Cited by: 35
Author(s): Irem Sepil, Ben R. Hopkins, Rebecca Dean, Eleanor Bath, Solomon Friedman, B.F. Swanson, Harrison J Ostridge, Lucy Harper, Norene A. Buehner, Mariana F. Wolfner, Rebecca Konietzny, Marie‐Laëtitia Thézénas, Elizabeth Sandham, P. David Charles, Román Fischer, Josefa Steinhauer, Benedikt M. Kessler, Stuart Wigby
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2018.00126

Genome-Wide Identification and Classification of Soybean C2H2 Zinc Finger Proteins and Their Expression Analysis in Legume-Rhizobium Symbiosis
Cited by: 35
Author(s): Songli Yuan, Xiangyong Li, Rong Li, Lei Wang, Chanjuan Zhang, Limiao Chen, Qingnan Hao, Xiaojuan Zhang, Haifeng Chen, Shan Zhang, Zengling Yang, Shuilian Chen, Dandan Qiu, Danxia Ke, Xinan Zhou
Software Mentions: 2
Published: over 8 years ago

10.1007/s13238-019-00662-0

Contact-dependent delivery of IL-2 by dendritic cells to CD4 T cells in the contraction phase promotes their long-term survival
Cited by: 4
Author(s): Dan Tong, Li Zhang, Fei Ning, Ying Xu, Xiaoyu Hu, Yan Shi
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2019.03104

Genomic Analysis of Putative Virulence Factors Affecting Cytotoxicity of Cronobacter
Cited by: 8
Author(s): Jinghua Cui, Jinrui Hu, Xin Du, Chao Yan, Guanhua Xue, Shaoli Li, Zhigang Cui, Hua Huang, Jing Yuan
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.00347

Bacterial Community Selection of Russula griseocarnosa Mycosphere Soil
Cited by: 9
Author(s): Fei Yu, Jiankun Liang, Jie Song, Shengkun Wang, Junkun Lu
Software Mentions: 2
Published: over 6 years ago

10.1186/1742-4690-10-160

Transcriptional profiling reveals molecular signatures associated with HIV permissiveness in Th1Th17 cells and identifies Peroxisome Proliferator-Activated Receptor Gammaas an intrinsic negative regulator of viral replication
Cited by: 44
Author(s): Annie Bernier, Aurélie Cleret-Buhot, Yuwei Zhang, Jean-Philippe Goulet, Patricia Monteiro, Annie Gosselin, Sandrina DaFonseca, Vanessa Sue Wacleche, Mohammad Ali Jenabian, Jean Pierre Routy, Cécile Tremblay, Petronela Ancuța
Software Mentions: 2
Published: almost 13 years ago

10.1186/s40001-014-0052-x

RETRACTED ARTICLE: Ranking candidate genes of esophageal squamous cell carcinomas based on differentially expressed genes and the topological properties of the co-expression network
Cited by: 3
Author(s): Yi Shen, Jicheng Tantai, Heng Zhao
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12284-021-00459-y

Genomics Analyses Reveal Unique Classification, Population Structure and Novel Allele of Neo-Tetraploid Rice
Cited by: 12
Author(s): Hang Yu, Qihang Li, Yudi Li, Haijun Yang, Zengjun Lu, Jinwen Wu, Zemin Zhang, Muhammad Qasim Shahid, Xiangdong Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12284-021-00524-6

Metabolomic and Transcriptomic Changes Induced by Potassium Deficiency During Sarocladium oryzae Infection Reveal Insights into Rice Sheath Rot Disease Resistance
Cited by: 9
Author(s): Jianglin Zhang, Zhifeng Lu, Tao Ren, Rihuan Cong, Xiaokun Li
Software Mentions: 2
Published: almost 5 years ago

10.1126/sciadv.abg4081

Immune checkpoint inhibitors increase T cell immunity during SARS-CoV-2 infection
Cited by: 26
Author(s): Nader Yatim, Jérémy Boussier, P. Tétu, Nikaïa Smith, Timothée Bruel, Bruno Charbit, Laura Barnabei, Aurélien Corneau, Laetitia Da Meda, Clara Allayous, Barouyr Baroudjian, Majdi Jebali, F. Herms, Ludivine Grzelak, Isabelle Staropoli, Vincent Calmettes, Jérôme Hadjadj, Olivier Peyrony, C. Cassius, Jérôme LeGoff, N. Kramkimel, S. Aractingi, Magnus Fontes, Catherine Blanc, Frédéric Rieux‐Laucat, Olivier Schwartz, Benjamin Terrier, Darragh Duffy, Célèste Lebbe
Software Mentions: 2
Published: about 5 years ago

10.1038/sdata.2015.30

Comparative, transcriptome analysis of self-organizing optic tissues
Cited by: 10
Author(s): Munazah Andrabi, Shigehiro Kuraku, Nozomu Takata, Yoshiki Sasai, Nick R. Love
Software Mentions: 2
Published: about 11 years ago

10.3389/fcimb.2019.00246

Variability in Genomic and Virulent Properties of Porphyromonas gingivalis Strains Isolated From Healthy and Severe Chronic Periodontitis Individuals
Cited by: 16
Author(s): Katterinne N. Mendez, Anilei Hoare, Cristopher Soto, Isaac Maximiliano Bugueno, Marcela Olivera, Claudio Meneses, José M. Pérez-Donoso, Eduardo Castro-Nallar, Denisse Bravo
Software Mentions: 2
Published: about 7 years ago

10.1038/srep11606

Microbial population dynamics in response to Pectobacterium atrosepticum infection in potato tubers
Cited by: 45
Author(s): Viia Kõiv, Märt Roosaare, Eve Vedler, Paula Ann Kivistik, Kristel Toppi, David W. Schryer, Maido Remm, Tanel Tenson, Andres Mäe
Software Mentions: 2
Published: about 11 years ago

10.1038/srep12601

Inner workings of thrombolites: spatial gradients of metabolic activity as revealed by metatranscriptome profiling
Cited by: 42
Author(s): Jennifer M. Mobberley, Christina L. Khodadad, Pieter T. Visscher, R. Pamela Reid, Paul D. Hagan, Jamie S. Foster
Software Mentions: 2
Published: about 11 years ago

10.1038/srep20602

Intestinal Microbiota Distinguish Gout Patients from Healthy Humans
Cited by: 213
Author(s): Zhuang Guo, Jiachao Zhang, Zhanli Wang, Kay Ying Ang, Shi Huang, Qiangchuan Hou, Xiaoquan Su, Jun Qiao, Yi Zheng, Lifeng Wang, Eileen Y. Koh, Ho Danliang, Jian Xu, Yuan Kun Lee, Heping Zhang
Software Mentions: 2
Published: over 10 years ago

10.1038/srep22919

Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans
Cited by: 27
Author(s): Salah Zangenah, Nasir M. Abbasi, Anders F. Andersson, Peter Bergman
Software Mentions: 2
Published: over 10 years ago

10.1038/srep24984

Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids
Cited by: 29
Author(s): Dejun Li, Rizhong Zeng, Yan Li, Manman Zhao, Jinquan Chao, Li Yu, Kai Wang, Lihuang Zhu, Weimin Tian, Chengzhi Liang
Software Mentions: 2
Published: over 10 years ago

10.1038/srep27256

Induction of Germ Cell-like Cells from Porcine Induced Pluripotent Stem Cells
Cited by: 33
Author(s): Hanning Wang, Jinzhu Xiang, Wei Zhang, Junhong Li, Qingqing Wei, Zhong Liu, Hongsheng Ouyang, Jianyong Han
Software Mentions: 2
Published: over 10 years ago

10.1038/srep32524

Metagenomic approach reveals microbial diversity and predictive microbial metabolic pathways in Yucha, a traditional Li fermented food
Cited by: 61
Author(s): Jiachao Zhang, Xiaoru Wang, Dongxue Huo, Wu Li, Qisong Hu, Chang Xu, Sixin Liu, Congfa Li
Software Mentions: 2
Published: about 10 years ago

10.3389/fcimb.2021.659505

Non-Lactobacillus-Dominated Vaginal Microbiota Is Associated With a Tubal Pregnancy in Symptomatic Chinese Women in the Early Stage of Pregnancy: A Nested Case–Control Study
Cited by: 3
Author(s): Xiaofeng Ruan, Yingxuan Zhang, Si Chen, Xiaorong Liu, Fangfang Zhu, Yu‐Ning Huang, Xiaojing Liu, Songping Luo, Gaopi Deng, Jie Gao
Software Mentions: 2
Published: about 5 years ago

10.1038/srep37929

Variations in abundance, diversity and community composition of airborne fungi in swine houses across seasons
Cited by: 44
Author(s): Priyanka Kumari, Cheolwoon Woo, Naomichi Yamamoto, Hee Sun Choi
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep38709

Regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern Zhejiang, East China Sea
Cited by: 33
Author(s): Kai Wang, Xiansen Ye, Huajun Zhang, Heping Chen, Demin Zhang, Lian Liu
Software Mentions: 2
Published: almost 10 years ago

10.3389/fcell.2021.676364

Role of RNA N6-Methyladenosine Modification in Male Infertility and Genital System Tumors
Cited by: 10
Author(s): Shuai Liu, Yongfeng Lao, Yanan Wang, Rongxin Li, Xuefeng Fang, Yunchang Wang, Xiaolong Gao, Zhong Dong
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.678665

Exposure to Copper Compromises the Maturational Competency of Porcine Oocytes by Impairing Mitochondrial Function
Cited by: 7
Author(s): Jingyue Chen, Zhaokang Cui, Yawei Qiu, Xingxing Zhang, Fang Chen, Huili Wang, Bo Xiong, Yun Miao, Qian Gao
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.7658

Environmental DNA metabarcoding primers for freshwater fish detection and quantification: In silico and in tanks
Cited by: 17
Author(s): Lu Shu, Arne Ludwig, Zuogang Peng
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00076-18

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
Cited by: 168
Author(s): Gareth Trubl, Ho Bin Jang, Simon Roux, Joanne B. Emerson, Natalie Solonenko, Dean Vik, Lindsey Solden, Jared Ellenbogen, Alexander T. Runyon, Benjamin Bolduc, Ben J. Woodcroft, S. R. Saleska, Gene W. Tyson, Kelly Wrighton, Matthew B. Sullivan, V. I. Rich
Software Mentions: 2
Published: almost 8 years ago

10.1128/mSystems.00252-18

Independent Microevolution Mediated by Mobile Genetic Elements of Individual Clostridium difficile Isolates from Clade 4 Revealed by Whole-Genome Sequencing
Cited by: 15
Author(s): Yuan Wu, Chen Liu, Wenge Li, Junli Xu, Wenzhu Zhang, Yifei Dai, Jinxing Lu
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00060-19

Marine Chitinolytic Pseudoalteromonas Represents an Untapped Reservoir of Bioactive Potential
Cited by: 38
Author(s): Sara Skøtt Paulsen, Mikael Lenz Strube, Pernille Kjersgaard Bech, Lone Gram, Eva C. Sonnenschein
Software Mentions: 2
Published: about 7 years ago

10.1128/mSystems.00543-20

Reclassification of the Taxonomic Framework of Orders Cellvibrionales, Oceanospirillales, Pseudomonadales , and Alteromonadales in Class Gammaproteobacteria through Phylogenomic Tree Analysis
Cited by: 43
Author(s): Hu Liao, Xiaolan Lin, Yuqian Li, Mingming Qu, Yun Tian
Software Mentions: 2
Published: almost 6 years ago

10.3389/fcell.2020.00199

Molecular Events Controlling Cessation of Trunk Neural Crest Migration and Onset of Differentiation
Cited by: 5
Author(s): Vivian M. Lee, Sergio Hernández, Belle Giang, Chris L. Chabot, Jazmir M. Hernandez, María Elena de Bellard
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.01237-20

Bradyrhizobium diazoefficiens USDA110 Nodulation of Aeschynomene afraspera Is Associated with Atypical Terminal Bacteroid Differentiation and Suboptimal Symbiotic Efficiency
Cited by: 3
Author(s): Quentin Nicoud, Florian Lamouche, Anaïs Chaumeret, Thierry Balliau, Romain Le Bars, Mickaël Bourge, Fabienne Pierre, Florence Guérard, Erika Sallet, Solenn Tuffigo, Olivier Pierre, Yves Dessaux, Françoise Gilard, Bertrand Gakière, István Nagy, Attila Kereszt, Michel Zivy, Peter Mergaert, Benjamin Gourion, Benoît Alunni
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.00175-21

A MicroRNA Gene Panel Predicts the Vaginal Microbiota Composition
Cited by: 4
Author(s): Liqin Cheng, Dominika Kaźmierczak, Johanna Norenhag, Marica Hamsten, Emma Fransson, Ina Schuppe-Koistinen, Matts Olovsson, Lars Engstrand, Per Hydbring, Juan Du
Software Mentions: 2
Published: about 5 years ago

10.1186/s40246-021-00303-w

Screening of disease-related biomarkers related to neuropathic pain (NP) after spinal cord injury (SCI)
Cited by: 11
Author(s): Jia Zhao, Yang Li, Li-Min Huang, Zinan Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2020.590898

T-Box Transcription Factor 22 Is an Immune Microenvironment-Related Biomarker Associated With the BRAFV600E Mutation in Papillary Thyroid Carcinoma
Cited by: 3
Author(s): Xubin Dong, Jingjing Song, Jing Hu, Cheng Zheng, Xiaohua Zhang, Haiguang Liu
Software Mentions: 2
Published: over 5 years ago

10.1093/humrep/dez139

Tissue stiffness at the human maternal–fetal interface
Cited by: 53
Author(s): Yassen Abbas, Alejandro Carnicer‐Lombarte, Lucy Gardner, Jake Thomas, Jan J. Brosens, Ashley Moffett, Andrew Sharkey, Kristian Franze, Graham J. Burton, Michelle L. Oyen
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41396-017-0002-z

Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota
Cited by: 82
Author(s): Lin-Xing Chen, Celia Méndez–García, Nina Dombrowski, Luis E. Servín-Garcidueñas, Emiley A. Eloe‐Fadrosh, Fang Bao, Zhen Luo, Sha Tan, Xiao Zhi, Zheng-Shuang Hua, Esperanza Martı́nez-Romero, Tanja Woyke, Li Huang, Jesús Sánchez, A Peláez, Manuel Ferrer, Brett J. Baker, W. S. Shu
Software Mentions: 2
Published: over 8 years ago

10.1038/s41396-020-00817-6

Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment
Cited by: 33
Author(s): Claus Pelikan, Kenneth Wasmund, Clemens Glombitza, Bela Hausmann, Craig W. Herbold, Mathias Flieder, Alexander Loy
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41396-020-00828-3

Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions
Cited by: 49
Author(s): Barbara Bayer, Mak A. Saito, Matthew R. McIlvin, Sebastian Lücker, Dawn M. Moran, Thomas S. Lankiewicz, Chris L. Dupont, Alyson E. Santoro
Software Mentions: 2
Published: almost 6 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572