Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.1002/2211-5463.12897
A digital mRNA expression signature to classify challenging Spitzoid melanocytic neoplasms
Cited by: 1
Author(s): Lisa M. Hillen, Milan S. Geybels, Ivelina Spassova, Juergen C. Becker, Thilo Gambichler, Marjan Garmyn, Axel zur Hausen, Joost van den Oord, Véronique Winnepenninckx
Software Mentions: 3
Published: over 4 years ago
10.15252/msb.202110207
A genome‐scale yeast library with inducible expression of individual genes
Cited by: 30
Author(s): Yuko Arita, Griffin Kim, Li Z, Helena Friesen, Gina Turco, Rebecca Y. Wang, Dale Climie, Matej Ušaj, Manuel Hotz, Emily H. Stoops, Anastasia Baryshnikova, Charles Boone, David Botstein, Brenda Andrews, R. Scott McIsaac
Software Mentions: 3
Published: over 3 years ago
10.1002/2211-5463.13078
Identification of key modules and hub genes in glioblastoma multiforme based on co‐expression network analysis
Cited by: 5
Author(s): Chun Li, Bangming Pu, Lianzhi Gu, Mingwei Zhang, Hongping Shen, Yuan Yuan, Lishang Liao
Software Mentions: 3
Published: almost 4 years ago
10.3906/biy-2005-21
Signature changes in the expressions of protein-coding genes, lncRNAs, and repeat elements in early and late cellular senescence
Cited by: 4
Author(s): Gökhan Karakülah, Cihangir Yandım
Software Mentions: 3
Published: almost 4 years ago
10.1002/2211-5463.12737
Transcriptome analysis of roots from resistant and susceptible rice varieties infected with <i>Hirschmanniella mucronata</i>
Cited by: 7
Author(s): Xiaotang Sun, Lei Zhang, Ziqing Tang, Xugen Shi, Jian Ma, Ruqiang Cui
Software Mentions: 3
Published: about 5 years ago
10.1002/fsn3.2291
Dynamic changes of volatile compounds and bacterial diversity during fourth to seventh rounds of Chinese soy sauce aroma liquor
Cited by: 12
Author(s): Lingchang Wang, Kai Zhong, Aimin Luo, Jian Chen, Yi Shen, Xi Wang, Qiang He, Hong Gao
Software Mentions: 3
Published: over 3 years ago
10.1002/fsn3.1841
A comparative UPLC‐Q‐Orbitrap‐MS untargeted metabolomics investigation of different parts of <i>Clausena lansium</i> (Lour.) Skeels
Cited by: 15
Author(s): Ruiyi Fan, Cheng Peng, Xinxin Zhang, Diyang Qiu, Genlin Mao, Yusheng Lu, Jiwu Zeng
Software Mentions: 3
Published: about 4 years ago
10.18632/aging.102612
ASPM promotes glioblastoma growth by regulating G1 restriction point progression and Wnt-β-catenin signaling
Cited by: 29
Author(s): Xin Chen, Lijie Huang, Yang Yang, Suhua Chen, Jianjun Sun, Chang-cheng Ma, Jingcheng Xie, Yongmei Song, Jun Yang
Software Mentions: 3
Published: almost 5 years ago
10.18632/aging.103811
A newly defined risk signature, consisting of three m6A RNA methylation regulators, predicts the prognosis of ovarian cancer
Cited by: 25
Author(s): Lili Fan, Yu Lin, Lei Han, Guang Shu, Lingyun He, Zhipeng Yan, Rihan Hai, Gang Yin
Software Mentions: 3
Published: about 4 years ago
10.1186/s12935-021-02174-6
Carcinogenic effect of adenylosuccinate lyase (ADSL) in prostate cancer development and progression through the cell cycle pathway
Cited by: 3
Author(s): Jinling Liao, Qiong Song, Jie Li, Kechen Du, Chen Yang, Chunlin Zou, Zengnan Mo
Software Mentions: 3
Published: about 3 years ago
10.3389/fbioe.2020.00930
Immune Cytolytic Activity as an Indicator of Immune Checkpoint Inhibitors Treatment for Prostate Cancer
Cited by: 18
Author(s): Zhe Gao, Yiran Tao, Yue‐Yun Lai, Qiong Wang, Zean Li, Shirong Peng, Junxiu Chen, Wenli Cai, Kaiwen Li, Hai Huang
Software Mentions: 3
Published: over 4 years ago
10.3389/fcvm.2021.655869
AMPA-Type Glutamate Receptors Associated With Vascular Smooth Muscle Cell Subpopulations in Atherosclerosis and Vascular Injury
Cited by: 5
Author(s): Alessandro L Gallina, Urszula Rykaczewska, Robert Wirka, April S. Caravaca, Vladimir S. Shavva, Mohamad Youness, Glykeria Karadimou, Mariette Lengquist, Anton Razuvaev, Gabrielle Paulsson-Berne, Thomas Quertermous, Anton Gisterå, Stephen Malin, Laura Tarnawski, Ljubica Matic, Peder S. Olofsson
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.11145
COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
Cited by: 32
Author(s): Qishun Geng, Zhibo Shen, Lifeng Li, Jie Zhao
Software Mentions: 3
Published: over 3 years ago
10.3389/fcvm.2020.597932
Expression Profiles of Circular RNA in Human Atrial Fibrillation With Valvular Heart Diseases
Cited by: 13
Author(s): Xiyu Zhu, Xingming Tang, Hoshun Chong, Hailong Cao, Fudong Fan, Jun Pan, Dongjin Wang, Qing Zhou
Software Mentions: 3
Published: about 4 years ago
10.3390/ijms21176322
The Lysine Specific Demethylase-1 Negatively Regulates the COL9A1 Gene in Human Articular Chondrocytes
Cited by: 6
Author(s): Anne-Laure Durand, Alexandre Dufour, E. Aubert-Foucher, Christine Oger-Desfeux, Marielle Pasdeloup, Sébastien Lustig, Elvire Servien, Gualter Vaz, Emeline Perrier‐Groult, Frédéric Mallein-Gerin, J. Lafont
Software Mentions: 3
Published: about 4 years ago
10.3389/fcvm.2021.680065
Analysis of Hub Genes and the Mechanism of Immune Infiltration in Stanford Type a Aortic Dissection
Cited by: 11
Author(s): Haoyu Gao, Xiaogang Sun, Yanxiang Liu, Shenghua Liang, Bowen Zhang, Luchen Wang, Ji-Hua Ren
Software Mentions: 3
Published: over 3 years ago
10.1186/s12870-015-0627-x
Transcriptomic comparison of the self-pollinated and cross-pollinated flowers of Erigeron breviscapus to analyze candidate self-incompatibility-associated genes
Cited by: 19
Author(s): Wei Zhang, Wei Xiang, Meng Heng-lin, Chunhua Ma, Ni-Hao Jiang, Guanghui Zhang, Shengchao Yang
Software Mentions: 3
Published: about 9 years ago
10.7717/peerj.6251
Different revegetation types alter soil physical-chemical characteristics and fungal community in the Baishilazi Nature Reserve
Cited by: 26
Author(s): Jiaojiao Deng, You Yin, Jiyao Luo, Wenxu Zhu, Yongbin Zhou
Software Mentions: 3
Published: almost 6 years ago
10.3389/fcell.2021.669145
Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
Cited by: 7
Author(s): Qianhui Xu, Hao Xu, Ruilong Deng, Nanjun Li, Ruiqi Mu, Zhixuan Qi, Yunuo Shen, Zijie Wang, Jingchao Wen, Jiaxin Zhao, Di Weng, Wen Huang
Software Mentions: 3
Published: over 3 years ago
10.1042/BSR20202921
Immune-associated biomarkers for early diagnosis of Parkinson’s disease based on hematological lncRNA–mRNA co-expression
Cited by: 8
Author(s): Kecheng Lei, Liwen Zhang, Yijing He, Hui Sun, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 3
Published: almost 4 years ago
10.3390/toxins12110728
Diversity Assessment of Toxic Cyanobacterial Blooms during Oxidation
Cited by: 20
Author(s): Saber Moradinejad, Hana Trigui, Juan Maldonado, B. Jesse Shapiro, Yves Terrat, Arash Zamyadi, Sarah Dorner, Michèle Prévost
Software Mentions: 3
Published: about 4 years ago
10.1186/s13018-020-01839-8
Bioinformatics analysis of differentially expressed genes in subchondral bone in early experimental osteoarthritis using microarray data
Cited by: 2
Author(s): Wang Zhao, Yong Ji, Hongwei Bao
Software Mentions: 3
Published: over 4 years ago
10.1186/s12870-020-02634-7
The Transcriptome of Cunninghamia lanceolata male/female cone reveal the association between MIKC MADS-box genes and reproductive organs development
Cited by: 12
Author(s): Dandan Wang, Zhaodong Hao, Xiaofei Long, Zhanjun Wang, Xianrui Zheng, Daiquan Ye, Peng Ye, Weihuang Wu, Xiangyang Hu, Guibin Wang, Renhua Zheng, Jisen Shi, Jinhui Chen
Software Mentions: 3
Published: about 4 years ago
10.1186/s13287-021-02247-3
Analyses of the pericyte transcriptome in ischemic skeletal muscles
Cited by: 9
Author(s): Yuan-chi Teng, Alfredo L. Porfírio‐Sousa, Giulia M. Ribeiro, Marcela Corso Arend, Lindolfo da Silva Meirelles, Elizabeth Chen, Daniela Santoro Rosa, Sang Won Han
Software Mentions: 3
Published: over 3 years ago
10.3390/ijms221810073
Systemic Expression of Genes Involved in the Plant Defense Response Induced by Wounding in Senna tora
Cited by: 11
Author(s): Ji-Nam Kang, Woo-Haeng Lee, So Youn Won, Saemin Chang, Jaemin Hong, Tae‐Jin Oh, Si Myung Lee, Sang-Ho Kang
Software Mentions: 3
Published: about 3 years ago
10.1186/s12870-021-03078-3
Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)
Cited by: 17
Author(s): Bin Huang, Zhinuo Huang, Ruifang Ma, Muthusamy Ramakrishnan, Jialu Chen, Zhijun Zhang, Kim Yrjälä
Software Mentions: 3
Published: over 3 years ago
10.1186/s13287-020-01729-0
Role of CD133 in human embryonic stem cell proliferation and teratoma formation
Cited by: 21
Author(s): Hua Wang, Peng Gong, Jie Li, Yudong Fu, Zhongli Zhou, Lin Liu
Software Mentions: 3
Published: over 4 years ago
10.1186/s12870-020-02499-w
Genetic diversity of SAD and FAD genes responsible for the fatty acid composition in flax cultivars and lines
Cited by: 17
Author(s): Alexey A. Dmitriev, Parfait Kezimana, Tatiana A. Rozhmina, А. А. Жученко, Liubov V. Povkhova, Elena N. Pushkova, Roman O. Novakovskiy, Miroslav Pavelek, Gleb Vladimirov, Evgeny N. Nikolaev, Oxana Kovaleva, Yury Kostyukevich, Vitaliy Chagovets, Е. В. Романова, Anastasiya V. Snezhkina, Anna V. Kudryavtseva, George S. Krasnov, Nataliya V. Melnikova
Software Mentions: 3
Published: about 4 years ago
10.3389/fcell.2021.594640
Overexpression of Long Non-coding RNA 4933425B07Rik Causes Urinary Malformations in Mice
Cited by: 2
Author(s): Lihong Tan, Minghui Yu, Yaxin Li, Shanshan Xue, Jing Chen, Yi­hui Zhai, Xiaoyan Fang, Jialu Liu, Jiaojiao Liu, Xiaohui Wu, Hong Xu, Qian Shen
Software Mentions: 3
Published: almost 4 years ago
10.3389/fcell.2020.582282
Increased Expression of Zyxin and Its Potential Function in Androgenetic Alopecia
Cited by: 5
Author(s): Qingmei Liu, Xiaofeng Shi, Yue Zhang, Yan Huang, Kai Yang, Yulong Tang, Yanyun Ma, Yuting Zhang, Ji'an Wang, Li Zhang, Qi Zhang, Lei Xiao, Jinran Lin, Jiucun Wang, Wenyu Wu
Software Mentions: 3
Published: almost 4 years ago
10.7717/peerj.9453
Microenvironment-related gene TNFSF13B predicts poor prognosis in kidney renal clear cell carcinoma
Cited by: 5
Author(s): Mingzhe Jiang, Jiaxing Lin, Haotian Xing, Jing An, Jieping Yang, Biao Wang, Meng Yu, Yuyan Zhu
Software Mentions: 3
Published: over 4 years ago
10.1038/bcj.2017.86
Meis2 as a critical player in MN1-induced leukemia
Cited by: 15
Author(s): Courteney K. Lai, Gudmundur L. Norddahl, Tobias Maetzig, Patty Rosten, Tanner Lohr, Lea Sanchez Milde, Niklas von Krosigk, T. Roderick Docking, Michael Heuser, Aly Karsan, R. Keith Humphries
Software Mentions: 3
Published: about 7 years ago
10.18632/aging.102178
Prognostic value of genome-wide DNA methylation patterns in noncoding miRNAs and lncRNAs in uveal melanomas
Cited by: 1
Author(s): Zheng Zhang, Dan Xu, Ke–Qing Shi, Minfeng Chen, Fan Liu
Software Mentions: 3
Published: over 5 years ago
10.18632/oncotarget.27732
Novel combination therapy for melanoma induces apoptosis via a gap junction positive feedback mechanism
Cited by: 3
Author(s): Archis Bagati, Timothy C. Hutcherson, Zethan Koch, Joseph Pechette, Hossein Dianat, Cory Higley, Lisa Chiu, Yesul Song, Jay B. Shah, Elana Chazen, Andrew Nicolais, Peter Casey, Kyle Thompson, K. Burke, Mikhail A. Nikiforov, J. Zirnheld, Shoshanna N. Zucker
Software Mentions: 3
Published: about 4 years ago
10.3390/ijms20235912
Quantitative Trait Module-Based Genetic Analysis of Alzheimer’s Disease
Cited by: 4
Author(s): Shaoxun Yuan, Haitao Li, Jingjing Xie, Xiao Sun
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0234893
Nutritional combinatorial impact on the gut microbiota and plasma short-chain fatty acids levels in the prevention of mammary cancer in Her2/neu estrogen receptor-negative transgenic mice
Cited by: 16
Author(s): Manvi Sharma, Itika Arora, Matthew L. Stoll, Yuanyuan Li, Casey D. Morrow, Stephen Barnes, Taylor F. Berryhill, Shizhao Li, Trygve O. Tollefsbol
Software Mentions: 3
Published: almost 4 years ago
10.3389/fmicb.2018.02023
Vertical Distribution of Microbial Eukaryotes From Surface to the Hadal Zone of the Mariana Trench
Cited by: 34
Author(s): Zhimeng Xu, Min Wang, Wenxue Wu, Yifan Li, Qian Liu, Yuye Han, Hongbing Shao, Andrew McMinn, Hongbin Liu
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pntd.0009217
Effects and interaction of meteorological factors on hemorrhagic fever with renal syndrome incidence in Huludao City, northeastern China, 2007–2018
Cited by: 12
Author(s): Wanwan Sun, Xiaobo Liu, Li Ming Wen, Zhiyuan Mao, Jimin Sun, Liang Lu
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pntd.0009297
Expression profiling of Echinococcus multilocularis miRNAs throughout metacestode development in vitro
Cited by: 7
Author(s): Natalia Macchiaroli, Matías Preza, Moira Pérez, Laura Kamenetzky, Marcela Alejandra Cucher, Uriel Koziol, Estela Castillo, Matthew Berriman, Klaus Brehm, Mara Cecília Rosenzvit
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2019.01424
The Diversity and Geographic Distribution of Cultivable Bacillus-Like Bacteria Across Black Soils of Northeast China
Cited by: 17
Author(s): Junjie Liu, Xiao Yang Cui, Zhuxiu Liu, Guo Zhaokui, Zhenhua Yu, Qin Yao, Yueyu Sui, Jian Jin, Xiaobing Liu
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pntd.0006280
Transcriptomes of Trypanosoma brucei rhodesiense from sleeping sickness patients, rodents and culture: Effects of strain, growth conditions and RNA preparation methods
Cited by: 27
Author(s): Julius Mulindwa, Kevin Leiss, David Ibberson, Kevin Kamanyi Marucha, Claudia Helbig, Larissa Mélo do Nascimento, Eleanor Silvester, Keith R. Matthews, Enock Matovu, John Enyaru, Christine Clayton
Software Mentions: 3
Published: almost 7 years ago
10.7554/eLife.56095
Inflammatory osteolysis is regulated by site-specific ISGylation of the scaffold protein NEMO
Cited by: 16
Author(s): Naga Suresh Adapala, Gaurav Swarnkar, Manoj Arra, Jie Shen, Gabriel Mbalaviele, Ke Ke, Yousef Abu‐Amer
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2021.679135
Age-Related Changes in the Ruminal Microbiota and Their Relationship With Rumen Fermentation in Lambs
Cited by: 10
Author(s): Xin Yin, Shoukun Ji, Chunhui Duan, Peizhi Tian, Sisi Ju, Hui Yan, Yingjie Zhang, Yueqin Liu
Software Mentions: 3
Published: about 3 years ago
10.3389/fmicb.2020.01038
Involvement of PaSNF1 in Fungal Development, Sterigmatocystin Biosynthesis, and Lignocellulosic Degradation in the Filamentous Fungus Podospora anserina
Cited by: 10
Author(s): Yuanjing Li, Ping Yan, Xiaojie Lu, Yanling Qiu, Liang Shang, Gang Liu, Shuangfei Li, Lin Ma, Ning Xie
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2020.589326
Temporospatial Flavonoids Metabolism Variation in Ginkgo biloba Leaves
Cited by: 17
Author(s): Ying Guo, Tongli Wang, Fangfang Fu, Guibin Wang
Software Mentions: 3
Published: about 4 years ago
10.3389/fgene.2020.594824
The Active Constituent From Gynostemma Pentaphyllum Prevents Liver Fibrosis Through Regulation of the TGF-β1/NDRG2/MAPK Axis
Cited by: 8
Author(s): Hui Huang, Kuifeng Wang, Qian Liu, Feihong Ji, Hu Zhou, Shanhua Fang, Jiansheng Zhu
Software Mentions: 3
Published: about 4 years ago
10.3389/fmicb.2020.01794
Fermentation Characteristics of Lactococcus lactis subsp. lactis Isolated From Naturally Fermented Dairy Products and Screening of Potential Starter Isolates
Cited by: 16
Author(s): Weicheng Li, Ren Min, Lana Duo, Jing Li, Shuai Wang, Yaru Sun, Min Li, Weiyi Ren, Qiangchuan Hou, Jie Yu, Zhihong Sun, Tingting Sun
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2021.628055
CAZymes in Maribacter dokdonensis 62–1 From the Patagonian Shelf: Genomics and Physiology Compared to Related Flavobacteria and a Co-occurring Alteromonas Strain
Cited by: 11
Author(s): Laura Wolter, Maximilian Mitulla, Jovan Kalem, Rolf Daniel, Meinhard Simon, Matthias Wietz
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2020.586814
Differential Expression and Bioinformatics Analysis of circRNA in Non-small Cell Lung Cancer
Cited by: 21
Author(s): Qian Sun, Xia Li, Muchen Xu, Li Zhang, Haiwei Zuo, Yong Xin, Longzhen Zhang, Ping Gong
Software Mentions: 3
Published: about 4 years ago
10.3389/fmolb.2021.640387
Lipidomic Perturbations in Cynomolgus Monkeys are Regulated by Thyroid Stimulating Hormone
Cited by: 2
Author(s): Tao Xu, Yi-Yan Yang, Xing Huang, Jianhong Ren, Ting Xu, Wei Xie
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2021.583568
Aberrantly DNA Methylated-Differentially Expressed Genes in Pancreatic Cancer Through an Integrated Bioinformatics Approach
Cited by: 4
Author(s): Haifeng Sun, Rui Xin, Changjun Zheng, Ge Huang
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2019.01045
Population Genetic Analysis of Modern and Ancient DNA Variations Yields New Insights Into the Formation, Genetic Structure, and Phylogenetic Relationship of Northern Han Chinese
Cited by: 25
Author(s): Pengyu Chen, Jian Wu, Li Luo, Hongyan Gao, Mengge Wang, Xing Zou, Yingxiang Li, Chen Gang, Haibo Luo, Limei Yu, Yanyan Han, Jia Fu, Guanglin He
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pbio.3000335
Mouse HSA+ immature cardiomyocytes persist in the adult heart and expand after ischemic injury
Cited by: 13
Author(s): Mariana Valente, Tatiana P. Resende, Diana S. Nascimento, Odile Burlen-Defranoux, Francisca Soares-da-Silva, B. Dupont, Ana Cumano, Perpétua Pinto-do-Ó
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2021.648158
Identification and Comparative Analysis of Long Non-coding RNAs in High- and Low-Fecundity Goat Ovaries During Estrus
Cited by: 3
Author(s): Yaokun Li, Xiangping Xu, Ming Deng, Xian Zou, Zhifeng Zhao, Sixiu Huang, Dewu Liu, Guangbin Liu
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2020.589076
Identification of mRNAs and lncRNAs Involved in the Regulation of Follicle Development in Goat
Cited by: 7
Author(s): Zhifeng Zhao, Xian Zou, Tingting Lu, Ming Deng, Yaokun Li, Yongqing Guo, Baoli Sun, Guangbin Liu, Dewu Liu
Software Mentions: 3
Published: almost 4 years ago
10.7554/eLife.13552
Neural clocks and Neuropeptide F/Y regulate circadian gene expression in a peripheral metabolic tissue
Cited by: 58
Author(s): Renske Erion, Anna N. King, Gang Wu, John B. Hogenesch, Amita Sehgal
Software Mentions: 3
Published: over 8 years ago
10.3389/fgene.2019.00561
Genome-Wide Identification and Homoeologous Expression Analysis of PP2C Genes in Wheat (Triticum aestivum L.)
Cited by: 44
Author(s): Xiao‐Lan Yu, Jiapeng Han, Efan Wang, Jie Xiao, Rui Hu, Guangxiao Yang, Guoqing He
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2019.00373
Identification of Potential Crucial Genes Associated With the Pathogenesis and Prognosis of Endometrial Cancer
Cited by: 45
Author(s): Li Liu, Jiajing Lin, Haiyang He
Software Mentions: 3
Published: over 5 years ago
10.3389/fonc.2020.597569
Identification and Validation of an Autophagy-Related lncRNA Signature for Patients With Breast Cancer
Cited by: 13
Author(s): Ruyue Zhang, Qingwen Zhu, Dengke Yin, Zichang Yang, Jiahao Guo, Jingmin Zhang, Yubing Zhou, Jane Yu
Software Mentions: 3
Published: almost 4 years ago
10.3389/fncel.2018.00352
IFN-γ Producing Th1 Cells Induce Different Transcriptional Profiles in Microglia and Astrocytes
Cited by: 22
Author(s): Chittappen Kandiyil Prajeeth, Oliver Dittrich‐Breiholz, Steven R. Talbot, Philippe A. Robert, Jochen Huehn, Martin Stangel
Software Mentions: 3
Published: about 6 years ago
10.3389/fncel.2018.00528
Identification of Altered Developmental Pathways in Human Juvenile HD iPSC With 71Q and 109Q Using Transcriptome Profiling
Cited by: 24
Author(s): Karolina Świtońska, Wojciech J. Szlachcic, Luiza Handschuh, Paweł Wojciechowski, Łukasz Marczak, Michał Stelmaszczuk, Marek Figlerowicz, Maciej Figiel
Software Mentions: 3
Published: almost 6 years ago
10.3389/fcimb.2020.608298
Analysis of Long Non-Coding RNA in Cryptosporidium parvum Reveals Significant Stage-Specific Antisense Transcription
Cited by: 18
Author(s): Yiran Li, Rodrigo P. Baptista, Adam Sateriale, Boris Striepen, Jessica C. Kissinger
Software Mentions: 3
Published: almost 4 years ago
10.3389/fonc.2021.647512
Transcriptomic and Mutational Analysis Discovering Distinct Molecular Characteristics Among Chinese Thymic Epithelial Tumor Patients
Cited by: 5
Author(s): Ning Liang, Lei Liu, Cheng Huang, Huan Liu, Chao Guo, Ji Li, Weiwei Wang, Nan Li, Rui Lin, Tao Wang, Lieming Ding, Li Mao, Shanqing Li
Software Mentions: 3
Published: about 3 years ago
10.3389/fcimb.2020.615876
Niche-Specific Adaptive Evolution of Lactobacillus plantarum Strains Isolated From Human Feces and Paocai
Cited by: 10
Author(s): Qiqi Pan, Shi Cen, Leilei Yu, Fengwei Tian, Hao Zhang, Qixiao Zhai
Software Mentions: 3
Published: almost 4 years ago
10.3389/fonc.2021.605296
Prediction of Post-hepatectomy Liver Failure in Patients With Hepatocellular Carcinoma Based on Radiomics Using Gd-EOB-DTPA-Enhanced MRI: The Liver Failure Model
Cited by: 15
Author(s): Yuyan Chen, Zelong Liu, Yun Xian Mo, Bin Li, Qian Zhou, Sui Peng, Shaoqiang Li, Ming Kuang
Software Mentions: 3
Published: over 3 years ago
10.7554/eLife.43785
Predominance of cis-regulatory changes in parallel expression divergence of sticklebacks
Cited by: 73
Author(s): Jukka‐Pekka Verta, Felicity C. Jones
Software Mentions: 3
Published: over 5 years ago
10.3389/fonc.2020.553628
Up-regulation of L Antigen Family Member 3 Associates With Aggressive Progression of Breast Cancer
Cited by: 3
Author(s): Xubin Dong, Shihui Lv, Di Gu, Xiaohua Zhang, Zhiqiang Ye
Software Mentions: 3
Published: almost 4 years ago
10.3389/fonc.2021.634617
CD96 Correlates With Immune Infiltration and Impacts Patient Prognosis: A Pan-Cancer Analysis
Cited by: 31
Author(s): Wenrui Ye, Cong Luo, Fangkun Liu, Zhixiong Liu, Fenghua Chen
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pgen.1007909
Dual role of DMXL2 in olfactory information transmission and the first wave of spermatogenesis
Cited by: 10
Author(s): Clara Gobé, Maëva Elzaïat, Nicolas Meunier, Marjolaine André, Eli Sellem, Patrice Congar, Luc Jouneau, Aurélie Allais‐Bonnet, Ikrame Naciri, Bruno Passet, Eric Pailhoux, Maëlle Pannetier
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0248430
High mutation burden in the checkpoint and micro-RNA processing genes in myelodysplastic syndrome
Cited by: 5
Author(s): Ivan S. Moiseev, Nikolai Tsvetkov, Ildar Barkhatov, Maria V. Barabanshikova, Dmitrii S. Bug, Natalya Vitalievna Petuhova, Артем Тишков, Evgeny Bakin, Е. А. Измайлова, Alena I. Shakirova, Alexander Kulagin, Elena Morozova
Software Mentions: 3
Published: over 3 years ago
10.3389/fonc.2021.693353
Identification of Key Genes Related to CD8+ T-Cell Infiltration as Prognostic Biomarkers for Lung Adenocarcinoma
Cited by: 6
Author(s): Minjun Du, Yicheng Liang, Zixu Liu, Xingkai Li, Mei Liang, Boxuan Zhou, Yushun Gao
Software Mentions: 3
Published: about 3 years ago
10.3389/fonc.2020.553983
Human Endogenous Retrovirus Expression Is Upregulated in the Breast Cancer Microenvironment of HIV Infected Women: A Pilot Study
Cited by: 8
Author(s): Gislaine Curty, Greta A. Beckerle, Luis P. Íñiguez, Robert L. Furler, Pedro S. de Carvalho, Jez L. Marston, Stéphane Champiat, Jonas J. Heymann, Christopher E. Ormsby, Gustavo Reyes‐Terán, Marcelo A. Soares, Douglas F. Nixon, Matthew L. Bendall, Fábio E. Leal, Miguel de Mulder Rougvie
Software Mentions: 3
Published: about 4 years ago
10.3389/fonc.2021.551160
Analysis of the EGFR Amplification and CDKN2A Deletion Regulated Transcriptomic Signatures Reveals the Prognostic Significance of SPATS2L in Patients With Glioma
Cited by: 16
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 3
Published: over 3 years ago
10.7554/eLife.59659
Def6 regulates endogenous type-I interferon responses in osteoblasts and suppresses osteogenesis
Cited by: 9
Author(s): Zhonghao Deng, Courtney Ng, Kenzo Inoue, Ziyu Chen, Yuhan Xia, Xiaoyu Hu, Matthew B. Greenblatt, Alessandra B. Pernis, Baohong Zhao
Software Mentions: 3
Published: almost 4 years ago
10.7554/eLife.49882
Obesity-linked suppression of membrane-bound O-acyltransferase 7 (MBOAT7) drives non-alcoholic fatty liver disease
Cited by: 84
Author(s): Robert N Helsley, Venkateshwari Varadharajan, Amanda Brown, Anthony D. Gromovsky, Rebecca C. Schugar, Iyappan Ramachandiran, Kevin Fung, Mohammad Nasser Kabbany, Rakhee Banerjee, Chase Neumann, Chelsea Finney, Preeti Pathak, Danny Orabi, Lucas J Osborn, William Massey, Renliang Zhang, Anagha Kadam, Brian E. Sansbury, Calvin Pan, Jessica Sacks, Richard G. Lee, Rosanne M. Crooke, Mark Graham, Madeleine E. Lemieux, Valentin Gogonea, John P. Kirwan, Daniela S. Allende, Mete Civelek, Paul L. Fox, Lawrence L. Rudel, Aldons J. Lusis, Matthew Spite
Software Mentions: 3
Published: about 5 years ago
10.3389/fonc.2020.01646
Ultrasound-Based Radiomics Analysis for Preoperatively Predicting Different Histopathological Subtypes of Primary Liver Cancer
Cited by: 33
Author(s): Yung-Hsing Peng, Peng Lin, Linyong Wu, Da Wan, Yujia Zhao, Li Liang, Xin Ma, Hui Qin, Yichen Liu, Xin Li, Xinrong Wang, Yun He, Hong Yang
Software Mentions: 3
Published: about 4 years ago
10.7150/jca.41123
Prognostic significance of age related genes in patients with lower grade glioma
Cited by: 15
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0160331
Differential Analysis of the Nasal Microbiome of Pig Carriers or Non-Carriers of Staphylococcus aureus
Cited by: 27
Author(s): Carmen Espinosa-Gongora, Niels Larsen, Kristian Schønning, Merete Fredholm, Luca Guardabassi
Software Mentions: 3
Published: over 8 years ago
10.7150/jca.50472
High Expression of RhoBTB3 Predicts Favorable Chemothrapy Outcomes in non-M3 Acute Myeloid Leukemia
Cited by: 3
Author(s): Shuanghui Yang, Wei Liu, Jie Peng, Yajing Xu, Yanfeng Liu, Yan Li, Minyuan Peng, Zhao Ouyang, Cong Chen, Enyi Liu
Software Mentions: 3
Published: almost 4 years ago
10.1111/jcmm.16264
Construction of co‐expression modules related to survival by WGCNA and identification of potential prognostic biomarkers in glioblastoma
Cited by: 22
Author(s): Jing Zhou, Hao Guo, Likun Liu, Shulan Hao, Zhi Guo, Fupeng Zhang, Yu Tang Gao, Zhi Wang, Weiwei Zhang
Software Mentions: 3
Published: almost 4 years ago
10.1210/clinem/dgaa382
Effect of Gut Microbiota and <i>PNPLA3</i> rs738409 Variant on Nonalcoholic Fatty Liver Disease (NAFLD) in Obese Youth
Cited by: 39
Author(s): Ayesha Monga Kravetz, Todd Testerman, Brittany Galuppo, Joerg Graf, Bridget Pierpont, Stephan Siebel, Richard Feinn, Nicola Santoro
Software Mentions: 3
Published: over 4 years ago
10.3390/nu13061808
Short- and Branched-Chain Fatty Acids as Fecal Markers for Microbiota Activity in Vegans and Omnivores
Cited by: 24
Author(s): Iris Trefflich, Suzanne W. Dietrich, Annett Braune, Klaus Abraham, Cornelia Weikert
Software Mentions: 3
Published: over 3 years ago
10.3390/jcm9092920
A Pilot Study on MicroRNA Profile in Tear Fluid to Predict Response to Anti-VEGF Treatments for Diabetic Macular Edema
Cited by: 9
Author(s): Hwei Wuen Chan, Binxia Yang, Wai P. Wong, Paul Blakeley, Ivan Seah, Queenie Shu Woon Tan, Haofei Wang, Mayuri Bhargava, Hazel Anne Lin, Charmaine Chai, Erlangga Ariadarma Mangunkusumo, Thet Naing, Yew Sen Yuen, Raman Sethi, Si Wang, Walter Hunziker, Lingam Gopal, Xinyi Su
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.ppat.1008006
Shigella sonnei infection of zebrafish reveals that O-antigen mediates neutrophil tolerance and dysentery incidence
Cited by: 17
Author(s): Vincenzo Torraca, Myrsini Kaforou, Jayne Watson, Gina Duggan, Hazel Guerrero-Gutierrez, Sina Krokowski, Michael Hollinshead, Tom Clarke, Rafal Mostowy, Gillian S. Tomlinson, Vanessa Sancho‐Shimizu, Abigail Clements, Serge Mostowy
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0188082
Global analysis of gene expression mediated by OX1 orexin receptor signaling in a hypothalamic cell line
Cited by: 4
Author(s): Eric Koesema, Thomas Kodadek
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.ppat.1008803
Closely related reovirus lab strains induce opposite expression of RIG-I/IFN-dependent versus -independent host genes, via mechanisms of slow replication versus polymorphisms in dsRNA binding σ3 respectively
Cited by: 17
Author(s): Adil Mohamed, Prathyusha Konda, Heather E. Eaton, Shashi Gujar, James R. Smiley, Maya Shmulevitz
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.ppat.1008870
Eomes cannot replace its paralog T-bet during expansion and differentiation of CD8 effector T cells
Cited by: 7
Author(s): Jonas Fixemer, Jonas Hummel, Frederic Arnold, Christoph S. N. Klose, Alexis Hofherr, Kristoffer Weißert, Tamara Kögl, Michael Köttgen, Sebastian J. Arnold, Peter Aichele, Yakup Tanriver
Software Mentions: 3
Published: about 4 years ago
10.1098/rsos.210113
Gene expression associated with disease resistance and long-term growth in a reef-building coral
Cited by: 9
Author(s): Emma R. Kelley, Robin S. Sleith, Mikhail V. Matz, Rachel M. Wright
Software Mentions: 3
Published: over 3 years ago
10.1186/s12958-021-00801-5
Trophoblast derived extracellular vesicles specifically alter the transcriptome of endometrial cells and may constitute a critical component of embryo-maternal communication
Cited by: 19
Author(s): Kasun Godakumara, James Ord, Freddy Lättekivi, Keerthie Dissanayake, Janeli Viil, Nageswara Rao Boggavarapu, Omid R. Faridani, Kersti Jääger, Agne Velthut-Meikas, Ülle Jaakma, Andres Salumets, Alireza Fazeli
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pgen.1008941
A point mutation decouples the lipid transfer activities of microsomal triglyceride transfer protein
Cited by: 16
Author(s): Meredith H. Wilson, Sujith Rajan, Aidan Danoff, Richard White, Monica R. Hensley, Vanessa H. Quinlivan, Rosario Recacha, James H. Thierer, Frederick J. Tan, Elisabeth M Busch-Nentwich, Lloyd W. Ruddock, M. Mahmood Hussain, Steven A. Farber
Software Mentions: 3
Published: over 4 years ago
10.21203/rs.3.rs-86169/v1
Clofazimine is a broad-spectrum coronavirus inhibitor that antagonizes SARS-CoV-2 replication in primary human cell culture and hamsters
Cited by: 11
Author(s): Shuofeng Yuan, Xin Yin, Xiangzhi Meng, Jasper Fuk Woo Chan, Zi‐Wei Ye, Laura Riva, Lars Pache, Chris Chun-Yiu Chan, Pok-Man Lai, Chris Chun Yiu Chan, Vincent Kwok Man Poon, Naoko Matsunaga, Yuan Pu, Chun-Kit Yuen, Jianli Cao, Ronghui Liang, Kaiming Tang, Sheng Li, Yushen Du, Wan Xu, Kong-Hung Sze, Jinxia Zhang, Hin Chu, Kin‐Hang Kok, Kelvin Kai-Wang To, Dong-Yan Jin, Ren Sun, Sumit K. Chanda, Kwok‐Yung Yuen
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0210650
LncRNA expression profile and ceRNA analysis in tomato during flowering
Cited by: 24
Author(s): Zhenchao Yang, Chengcheng Yang, Zhengyan Wang, Yang Zhao, Danyan Chen, Yongjun Wu
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12931-019-0995-0
Identification of differentially expressed proteins in the injured lung from zinc chloride smoke inhalation based on proteomics analysis
Cited by: 13
Author(s): Xiaowei Xie, Jiemin Zhao, Lei Xie, Haiyan Wang, Yan Xiao, Yingjia She, Lingyun Ma
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0242263
Identification of prognostic genes in uveal melanoma microenvironment
Cited by: 23
Author(s): Huan Luo, Chi Ma
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0241924
Identification of a 6-gene signature for the survival prediction of breast cancer patients based on integrated multi-omics data analysis
Cited by: 7
Author(s): Wenju Mo, Yuqin Ding, Shuai Zhao, Dayang Zou, Xiaowen Ding
Software Mentions: 3
Published: about 4 years ago
10.1038/s41597-020-00754-1
Transcriptome dataset of human corneal endothelium based on ribosomal RNA-depleted RNA-Seq data
Cited by: 13
Author(s): Yoshiyuki Tokuda, Naoki Okumura, Yuya Komori, Naoya Hanada, Kei Tashiro, Noriko Koizumi, Masakazu Nakano
Software Mentions: 3
Published: about 4 years ago
10.1038/srep12978
From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization
Cited by: 42
Author(s): Xiaofang Li, Philip L. Bond, Joy D. Van Nostrand, Jizhong Zhou, Longbin Huang
Software Mentions: 3
Published: over 9 years ago
10.1038/srep13888
Comprehensive urinary metabolomic profiling and identification of potential noninvasive marker for idiopathic Parkinson’s disease
Cited by: 107
Author(s): Hemi Luan, Liang-Feng Liu, Tian Zhi, Manwen Zhang, Ka-Kit Chua, Ju‐Xian Song, Vincent Mok, Min Li, Zongwei Cai
Software Mentions: 3
Published: about 9 years ago
10.1038/srep27623
Multiplex giant magnetoresistive biosensor microarrays identify interferon-associated autoantibodies in systemic lupus erythematosus
Cited by: 31
Author(s): J. Lee, D. James Haddon, Hannah Wand, J. M. Price, Vivian K. Diep, Drew A. Hall, Michelle Petri, Emily C. Baechler, Imelda Balboni, Paul J. Utz, Shan X. Wang
Software Mentions: 3
Published: over 8 years ago
10.1038/srep28075
Cellular responses to HSV-1 infection are linked to specific types of alterations in the host transcriptome
Cited by: 52
Author(s): Benxia Hu, Li X, Yongxia Huo, Yafen Yu, Qiuping Zhang, Guijun Chen, Yaping Zhang, Nigel W. Fraser, Dong‐Dong Wu, Jumin Zhou
Software Mentions: 3
Published: over 8 years ago