cran: pheatmap | Projects | Ecosyste.ms: Papers

10.3389/fgene.2021.664260

Large-Scale Multiplexing Permits Full-Length Transcriptome Annotation of 32 Bovine Tissues From a Single Nanopore Flow Cell
Cited by: 11
Author(s): Michelle M. Halstead, Alma Islas–Trejo, Daniel Estanislao Goszczynski, Juan F. Medrano, Huaijun Zhou, Pablo J. Ross
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2017.01199

Plasmodium berghei NK65 in Combination with IFN-γ Induces Endothelial Glucocorticoid Resistance via Sustained Activation of p38 and JNK
Cited by: 9
Author(s): Karolina Zielińska, Lode De Cauwer, Sofie Knoops, Kristof Van der Molen, Alexander Sneyers, Jonathan Thommis, J. Brian de Souza, Ghislain Opdenakker, Karolien De Bosscher, Philippe E. Van den Steen
Software Mentions: 4
Published: almost 9 years ago

10.3389/fonc.2021.688882

MiR-1236-3p Inhibits the Proliferation, Invasion, and Migration of Colon Cancer Cells and Hinders Epithelial-Mesenchymal Transition by Targeting DCLK3
Cited by: 9
Author(s): Yang Zhao, Hongyi Zhou, Jie Shen, Shaohui Yang, Ke Deng, Qi Li, Wei Cui
Software Mentions: 4
Published: about 5 years ago

10.3389/fnins.2021.605654

Alteration of N6 -Methyladenosine mRNA Methylation in a Rat Model of Cerebral Ischemia–Reperfusion Injury
Cited by: 34
Author(s): Dazhuang Yi, Qunhui Wang, Yuhao Zhao, Shuhui Yu, Hong You, Jian Wang, Renjie Liu, Shi Zhong-qiang, Xuan Chen, Qi Luo
Software Mentions: 4
Published: over 5 years ago

10.1042/BSR20194337

Mining TCGA database for tumor mutation burden and their clinical significance in bladder cancer
Cited by: 71
Author(s): Jia Lv, Yongze Zhu, Alin Ji, Qi Zhang, Guodong Liao
Software Mentions: 4
Published: over 6 years ago

10.1186/s12885-020-07702-7

The effect of a novel glycolysis-related gene signature on progression, prognosis and immune microenvironment of renal cell carcinoma
Cited by: 35
Author(s): Fangshi Xu, Yawen Guan, Li Xue, Sheng‐Li Huang, Ke Gao, Zhen Yang, Tie Chong
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00438-020-01735-0

Major latex protein-like encoding genes contribute to Rhizoctonia solani defense responses in sugar beet
Cited by: 16
Author(s): Louise Holmquist, Fredrik Dölfors, Johan Fogelqvist, Jonathan Cohn, Thomas Kraft, Christina Dixelius
Software Mentions: 4
Published: almost 6 years ago

10.1186/s10020-021-00294-3

Identification of prognostic alternative splicing events related to the immune microenvironment of hepatocellular carcinoma
Cited by: 6
Author(s): Shanshan Yu, Luya Cai, Chuan Liu, Ruihong Gu, Lingyi Cai, Leying Zhuo
Software Mentions: 4
Published: over 5 years ago

10.3389/fneur.2021.576382

Potential Molecular Mechanism of TNF Superfamily-Related Genes in Glioblastoma Multiforme Based on Transcriptome and Epigenome
Cited by: 6
Author(s): Hui Xie, Ce Yuan, Jinjiang Li, Zhaoyang Li, Wei-Cheng Lu
Software Mentions: 4
Published: over 5 years ago

10.1186/s40813-021-00206-1

Antimicrobial resistance in commensal Escherichia coli and Enterococcus spp. is influenced by production system, antimicrobial use, and biosecurity measures on Spanish pig farms
Cited by: 15
Author(s): Óscar Mencía‐Ares, Héctor Argüello, Héctor Puente, Manuel Gómez‐García, Edgar García Manzanilla, Avelino Álvarez‐Ordóñez, Ana Carvajal, Pedro Rubio
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11082241

Transcriptomic Response under Heat Stress in Chickens Revealed the Regulation of Genes and Alteration of Metabolism to Maintain Homeostasis
Cited by: 8
Author(s): Hana Kim, Hye‐Ran Kim, Pil‐Nam Seong, D. K. Arora, Donghyun Shin, Woncheoul Park, Jong-Eun Park
Software Mentions: 4
Published: about 5 years ago

10.1002/1878-0261.12369

Metabolomic profiling of human lung tumor tissues – nucleotide metabolism as a candidate for therapeutic interventions and biomarkers
Cited by: 37
Author(s): Paula Moreno, Carla Jiménez‐Jiménez, Martín Garrido‐Rodriguez, M. Calderón-Santiago, Susana Molina, Maribel Lara‐Chica, Feliciano Priego‐Capote, A. Salvatierra, Eduardo Muñóz, Marco A. Calzado
Software Mentions: 4
Published: almost 8 years ago

10.3390/biom11091286

Lipocalin 2 Deficiency Restrains Aging-Related Reshaping of Gut Microbiota Structure and Metabolism
Cited by: 2
Author(s): Xing‐Biao Qiu, Chi Chen, Xiaoli Chen
Software Mentions: 4
Published: about 5 years ago

10.3389/fmolb.2021.653805

High Expression Levels of CDK1 and CDC20 in Patients With Lung Squamous Cell Carcinoma are Associated With Worse Prognosis
Cited by: 3
Author(s): Huan Deng, Hang Qin, Deyan Shen, Hangjie Ying, Yibi Zhang, Qinying Xu, Ming Chen
Software Mentions: 4
Published: about 5 years ago

10.1186/s12967-021-03057-0

Establishment of a novel glycolysis-related prognostic gene signature for ovarian cancer and its relationships with immune infiltration of the tumor microenvironment
Cited by: 18
Author(s): Jianlei Bi, Fangfang Bi, Xue Pan, Qing Yang
Software Mentions: 4
Published: almost 5 years ago

10.1007/s11302-020-09711-4

High expression levels of pyrimidine metabolic rate–limiting enzymes are adverse prognostic factors in lung adenocarcinoma: a study based on The Cancer Genome Atlas and Gene Expression Omnibus datasets
Cited by: 37
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 4
Published: about 6 years ago

10.1186/s13048-021-00802-3

Small RNA sequencing reveals distinct nuclear microRNAs in pig granulosa cells during ovarian follicle growth
Cited by: 7
Author(s): Derek Toms, Bo Pan, Yinshan Bai, Julang Li
Software Mentions: 4
Published: over 5 years ago

10.1002/advs.201903366

Transferrin Receptor 1 Regulates Thermogenic Capacity and Cell Fate in Brown/Beige Adipocytes
Cited by: 33
Author(s): Jin Li, Xiaohan Pan, Guihua Pan, Zijun Song, Yao He, Susu Zhang, Xueru Ye, Yang Xiang, Enjun Xie, Xinhui Wang, Xudong Mai, Xing Yin, Biyao Tang, Xuan Shu, Pengyu Chen, Xiaoshuang Dai, Ye Tian, Liheng Yao, Mulan Han, Guohuan Xu, Huijie Zhang, Jia Sun, Hong Chen, Fudi Wang, Junxia Min, Liwei Xie
Software Mentions: 4
Published: over 6 years ago

10.21203/rs.3.rs-141578/v1

COVID-19 ARDS is characterized by a dysregulated host response that differs from cytokine storm and is modified by dexamethasone
Cited by: 14
Author(s): Aartik Sarma, Stephanie A. Christenson, Eran Mick, Thomas Deiss, Catherine DeVoe, Angela Oliveira Pisco, Rajani Ghale, Alejandra Jauregui, Ashley Byrne, Farzad Moazed, Natasha Spottiswoode, Pratik Sinha, Beth Shoshana Zha, Norma Neff, Michelle Tan, Paula Hayakawa Serpa, K. Mark Ansel, Jennifer G. Wilson, Aleksandra Leligdowicz, Emily Seigel, Marina Sirota, Joseph L. DeRisi, Michael A. Matthay, Carolyn M. Hendrickson, Kirsten N. Kangelaris, Matthew F. Krummel, Prescott G. Woodruff, David J. Erle, Carolyn S. Calfee, Charles Langelier
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.633059

Prediction of a Competing Endogenous RNA Co-expression Network by Comprehensive Methods in Systemic Sclerosis-Related Interstitial Lung Disease
Cited by: 2
Author(s): Yue-Mei Yan, Ji-Na Zheng, Liwei Wu, Qianwen Rao, Qiaorong Yang, Di Gao, Qiang Wang
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.2006249

Insulin signaling and reduced glucocorticoid receptor activity attenuate postprandial gene expression in liver
Cited by: 35
Author(s): Adrija Kalviša, Majken Siersbæk, Stine M. Præstholm, Line Julie Lindorf Christensen, Ronni Nielsen, Oliver Stöhr, Sabine Vettorazzi, Jan Tuckermann, Morris F. White, Susanne Mandrup, Lars Grøntved
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.202781

One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
Cited by: 3
Author(s): Baoquan Han, Lu Wang, Shuai Yu, Wei Ge, Yaqi Li, Hui Jiang, Wei Shen, Zhongyi Sun
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2018.00699

Clec9a-Mediated Ablation of Conventional Dendritic Cells Suggests a Lymphoid Path to Generating Dendritic Cells In Vivo
Cited by: 18
Author(s): Johanna Salvermoser, Janneke van Blijswijk, Nikos E. Papaioannou, Stephan Rambichler, Mária Pásztói, Dalia Pakalniškytė, Neil C. Rogers, Selina J. Keppler, Tobias Straub, Caetano Reis e Sousa, Barbara U. Schraml
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pbio.3000891

Interphase-arrested Drosophila embryos activate zygotic gene expression and initiate mid-blastula transition events at a low nuclear-cytoplasmic ratio
Cited by: 19
Author(s): I. Strong, Xianfu Lei, Fang Chen, Kai Yuan, Patrick H. O’Farrell
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12931-021-01743-7

RORγt inhibitors block both IL-17 and IL-22 conferring a potential advantage over anti-IL-17 alone to treat severe asthma
Cited by: 11
Author(s): David Lamb, Dorothy De Sousa, Karsten Quast, Katrin Fundel‐Clemens, Jonas Erjefält, Caroline Sandén, Hans Jürgen Hoffmann, Marc Kästle, RM Schmid, Kevin Menden, Denis Delić
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/8848227

A Novel Autophagy-Related lncRNA Gene Signature to Improve the Prognosis of Patients with Melanoma
Cited by: 10
Author(s): Yi Ding, Li Tian, Min Li, Tuersong Tayier, Meilin Zhang, Long Chen, Shumei Feng
Software Mentions: 4
Published: about 5 years ago

10.1155/2020/6784138

Identification of FOS as a Candidate Risk Gene for Liver Cancer by Integrated Bioinformatic Analysis
Cited by: 10
Author(s): Jinwu Hu, Guangyu Ding, Pei-Yao Fu, Wei‐Guo Tang, Qiqing Sun, Xiao‐Dong Zhu, Ying‐Hao Shen, Ji Zhou, Jia Fan, Hui–Chuan Sun, Cheng Huang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1004809

QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks
Cited by: 11
Author(s): Asa Thibodeau, Eladio J. Márquez, Oscar Junhong Luo, Yijun Ruan, Francesca Menghi, Dong-Guk Shin, Michael L. Stitzel, Paola Vera-Licona, Duygu Ucar
Software Mentions: 4
Published: about 10 years ago

10.3389/fmicb.2021.658292

Cross-Talk Between Butyric Acid and Gut Microbiota in Ulcerative Colitis Following Fecal Microbiota Transplantation
Cited by: 21
Author(s): Haoming Xu, Honglan Huang, Jing Xu, Jie He, Chong Zhao, Yuling Peng, Hailan Zhao, Wenqi Huang, Chuangyu Cao, Yongjian Zhou, Yuqiang Nie
Software Mentions: 4
Published: over 5 years ago

10.3389/fnmol.2021.699562

Spatial RNA Sequencing Identifies Robust Markers of Vulnerable and Resistant Human Midbrain Dopamine Neurons and Their Expression in Parkinson’s Disease
Cited by: 20
Author(s): Julio Águila, Shu Cheng, Nigel Kee, Mengshu Cao, Menghan Wang, Qiaolin Deng, Eva Hedlund
Software Mentions: 4
Published: about 5 years ago

10.1038/s41419-021-03826-1

Gata2-L359V impairs primitive and definitive hematopoiesis and blocks cell differentiation in murine chronic myelogenous leukemia model
Cited by: 7
Author(s): Yanbin Fu, Yun Tan, Baichang Wu, Yuting Dai, Xiaoguang Xu, Mengmeng Pan, Zhiwei Chen, Na Qiao, Jing Wu, Lu Jiang, Jing Lu, Bing Chen, Avigail Rein, Shai Izraeli, Xiao Jian Sun, Jinyan Huang, Qiu-Hua Huang, Zhu Chen, Sai‐Juan Chen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009466

activin-2 is required for regeneration of polarity on the planarian anterior-posterior axis
Cited by: 13
Author(s): Jennifer Cloutier, Conor L. McMann, Isaac M. Oderberg, Peter W. Reddien
Software Mentions: 4
Published: over 5 years ago

10.1186/s12284-018-0211-8

Comparative analysis of the root transcriptomes of cultivated and wild rice varieties in response to Magnaporthe oryzae infection revealed both common and species-specific pathogen responses
Cited by: 27
Author(s): Lei Tian, Shaohua Shi, Fahad Nasir, Chunguang Chang, Weiqiang Li, Lam‐Son Phan Tran, Chunjie Tian
Software Mentions: 4
Published: over 8 years ago

10.1155/2020/7594098

Development and Validation of an Immune-Related Prognostic Signature for Ovarian Cancer Based on Weighted Gene Coexpression Network Analysis
Cited by: 6
Author(s): Yuanyuan An, Qing Yang
Software Mentions: 4
Published: over 5 years ago

10.3389/fendo.2021.705154

Weighted Gene Co-Expression Network Analysis Identifies ANGPTL4 as a Key Regulator in Diabetic Cardiomyopathy via FAK/SIRT3/ROS Pathway in Cardiomyocyte
Cited by: 8
Author(s): Lei Dai, Yang Xie, Wenjun Zhang, Xiaodan Zhong, Mengwen Wang, Hongchen Jiang, Zhen He, Xiaolei Liu, Hesong Zeng, Hongjie Wang
Software Mentions: 4
Published: almost 5 years ago

10.1155/2020/8162524

High-Throughput Sequencing and Exploration of the lncRNA-circRNA-miRNA-mRNA Network in Type 2 Diabetes Mellitus
Cited by: 39
Author(s): Fang Yang, Chen Yang, Zhiqiang Xue, Yaogai Lv, Ли Шен, Kexin Li, Pingping Zheng, Pan Pan, Tianyu Feng, Lina Jin, Yan Yao
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.104119

Vascular endothelial growth factor receptor-2 and its association with tumor immune regulatory gene expression in hepatocellular carcinoma
Cited by: 5
Author(s): Ze-Long Liu, Lingling Zhu, Jinghua Liu, Zhaoxia Pu, Zhiping Ruan, Chen Jiang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fncel.2019.00370

Interplay of LIS1 and MeCP2: Interactions and Implications With the Neurodevelopmental Disorders Lissencephaly and Rett Syndrome
Cited by: 10
Author(s): Liraz Keidar, Gabi Gerlitz, Aditya Kshirsagar, Michael Tsoory, Tsviya Olender, Xing Wang, Ying Yang, Yu‐Sheng Chen, Yun‐Gui Yang, Irina Voineagu, Orly Reiner
Software Mentions: 4
Published: about 7 years ago

10.1155/2021/4582082

Identification of a Two-m6A RNA Methylation Regulator Risk Signature as an Independent Prognostic Biomarker in Papillary Renal Cell Carcinoma by Bioinformatic Analysis
Cited by: 5
Author(s): Fusheng Yang, Guojiang Zhao, Liyuan Ge, Yimeng Song, Kai Hong, Hongxian Zhang, Cheng Liu, Hong Peng, Lulin Ma
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1008073

Genetic determinants of gut microbiota composition and bile acid profiles in mice
Cited by: 67
Author(s): Julia H. Kemis, Vanessa Linke, Kelsey L Barrett, Frederick J. Boehm, Lindsay L. Traeger, Mark P. Keller, Mary E. Rabaglia, Kathryn L. Schueler, Donald S. Stapleton, Daniel M. Gatti, Gary A. Churchill, Daniel Amador‐Noguez, John N. Russell, Brian S. Yandell, Karl W. Broman, Joshua J. Coon, Alan D. Attie, Federico E. Rey
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pgen.1006778

Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness
Cited by: 11
Author(s): Adi Hendler, Edgar M. Medina, Anastasiya Kishkevich, Mehtap Abu-Qarn, Steffi Klier, Nicolas E. Buchler, Robertus A.M. de Bruin, Amir Aharoni
Software Mentions: 4
Published: over 9 years ago

10.3389/fcimb.2020.594778

Biliary Microbial Structure of Gallstone Patients With a History of Endoscopic Sphincterotomy Surgery
Cited by: 6
Author(s): Haikang Shen, Juanjuan Zhu, Fuqiang Ye, Danyi Xu, Liang Fang, Jianfeng Yang, Huijie Lv, Qifeng Lou, Hangbin Jin, Ming Ni, Xiaofeng Zhang
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/4980609

The Important Role of Perituberal Tissue in Epileptic Patients with Tuberous Sclerosis Complex by the Transcriptome Analysis
Cited by: 3
Author(s): Shuqiang Li, Huijie Shao, Liansheng Chang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2020.00615

Long Non-coding RNA LINC02195 as a Regulator of MHC I Molecules and Favorable Prognostic Marker for Head and Neck Squamous Cell Carcinoma
Cited by: 29
Author(s): Hao Li, Hong‐Gang Xiong, Yao Xiao, Qi‐Chao Yang, Shao‐Chen Yang, Hongchao Tang, Wenfeng Zhang, Zhi‐Jun Sun
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2021.639913

Comparison of Microbial Communities in Colorado Potato Beetles (Leptinotarsa decemlineata Say) Collected From Different Sources in China
Cited by: 6
Author(s): Yanxue Yu, Yuhan Wang, Hongwei Li, Xiubo Yu, Wangpeng Shi, Junfeng Zhai
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11071849

Environmental Streptococcus uberis Associated with Clinical Mastitis in Dairy Cows: Virulence Traits, Antimicrobial and Biocide Resistance, and Epidemiological Typing
Cited by: 10
Author(s): Norhan K. Abd El-Aziz, Ahmed M. Ammar, Hend M. El Damaty, Rehab A. Abd Elkader, Hosam A. Saad, Waleed El-Kazzaz, Eman Khalifa
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms22041904

Genome-Wide Identification and Characterization of Wheat 14-3-3 Genes Unravels the Role of TaGRF6-A in Salt Stress Tolerance by Binding MYB Transcription Factor
Cited by: 18
Author(s): Wenna Shao, Wang Chen, Xiaofu Zhu, Xiaoyi Zhou, Yingying Jin, Chuang Zhan, Gensen Liu, Xi Liu, Dongfang Ma, Yongli Qiao
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22041591

Reciprocal Changes in miRNA Expression with Pigmentation and Decreased Proliferation Induced in Mouse B16F1 Melanoma Cells by l-Tyrosine and 5-Bromo-2′-Deoxyuridine
Cited by: 4
Author(s): Hernán Mauricio Rivera, Esther Natalia Muñoz, Daniel Osuna, Mauro Florez, Michael Carvajal, Luis Alberto Gómez
Software Mentions: 4
Published: over 5 years ago

10.1038/srep13364

Chimeric peptide constructs comprising linear B-cell epitopes: application to the serodiagnosis of infectious diseases
Cited by: 26
Author(s): Yao Lu, Zhong Li, Huan Teng, Hongke Xu, Songnan Qi, Jianan He, Dayong Gu, Qijun Chen, Hongwei Ma
Software Mentions: 4
Published: about 11 years ago

10.1155/2021/6656943

Glial Cell-Derived Neurotrophic Factor Functions as a Potential Candidate Gene in Obstructive Sleep Apnea Based on a Combination of Bioinformatics and Targeted Capture Sequencing Analyses
Cited by: 3
Author(s): Yuanyuan Cao, Qing Zhu, Xintian Cai, Ting Wu, Xiayire Aierken, Ayguzal Ahmat, Shasha Li, Nanfang Li
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0009425

Profound downregulation of neural transcription factor Npas4 and Nr4a family in fetal mice neurons infected with Zika virus
Cited by: 3
Author(s): Sergio P. Alpuche-Lazcano, James Saliba, Vivian Vasconcelos Costa, Gabriel Henrique Campolina-Silva, Fernanda Martins Marim, Lucas S. Ribeiro, Volker Blank, Andrew J. Mouland, Mauro M. Teixeira, Anne Gatignol
Software Mentions: 4
Published: over 5 years ago

10.18632/oncotarget.14286

Comprehensive tissue-specific gene set enrichment analysis and transcription factor analysis of breast cancer by integrating 14 gene expression datasets
Cited by: 23
Author(s): Wen‐Xing Li, Kan He, Ling Tang, Shao‐Xing Dai, Gong‐Hua Li, Wen Lv, Yicheng Guo, Sanqi An, Guoying Wu, Dahai Liu, Jing‐Fei Huang
Software Mentions: 4
Published: over 9 years ago

10.1038/srep45840

Microbial Biogeography and Core Microbiota of the Rat Digestive Tract
Cited by: 105
Author(s): Dongyao Li, Haiqin Chen, Bingyong Mao, Qin Yang, Jianxin Zhao, Zhennan Gu, Hao Zhang, Yong Q. Chen, Wei Chen
Software Mentions: 4
Published: over 9 years ago

10.1007/s00395-021-00862-y

Fibroblast GATA-4 and GATA-6 promote myocardial adaptation to pressure overload by enhancing cardiac angiogenesis
Cited by: 29
Author(s): Gesine M. Dittrich, Natali Froese, Xue Wang, Hannah Kröger, Honghui Wang, Malgorzata Szaroszyk, Mona Malek Mohammadi, Julio Cordero, Merve Keles, Mortimer Korf‐Klingebiel, Kai C. Wollert, Robert Geffers, Manuel Mayr, Simon J. Conway, Gergana Dobreva, Johann Bauersachs, Joerg Heineke
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22020736

Omics Analysis of Blood-Responsive Regulon in Bordetella pertussis Identifies a Novel Essential T3SS Substrate
Cited by: 2
Author(s): Jakub Držmíšek, Daniel Štipl, Denisa Petráčková, Branislav Večerek, Ana Dienstbier
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-00650-6

Microbial Functional Capacity Is Preserved Within Engineered Soil Formulations Used In Mine Site Restoration
Cited by: 34
Author(s): Deepak Kumaresan, Adam T. Cross, Benjamin Moreira‐Grez, Khalil Kariman, Paul Nevill, Jason C. Stevens, Richard J. N. Allcock, Anthony G. O'Donnell, Kingsley W. Dixon, Andrew S. Whiteley
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-017-01794-1

Hormonal pleiotropy helps maintain queen signal honesty in a highly eusocial wasp
Cited by: 27
Author(s): Ricardo Caliari Oliveira, Ayrton Vollet-Neto, Cíntia Akemi Oi, Jelle S. van Zweden, Fábio Santos do Nascimento, Colin S. Brent, Tom Wenseleers
Software Mentions: 4
Published: over 9 years ago

10.3389/fonc.2018.00585

Plasma-Derived Inflammatory Proteins Predict Oral Squamous Cell Carcinoma
Cited by: 15
Author(s): Kelly Yi Ping Liu, Xian Lu, Yuqi Zhu, Nhu D. Le, Hugh Kim, Catherine F. Poh
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-021-81551-7

The root endophytic bacterial community of Ricinus communis L. resembles the seeds community more than the rhizosphere bacteria independent of soil water content
Cited by: 8
Author(s): Stephanie Hereira-Pacheco, Yendi E. Navarro‐Noya, Luc Dendooven
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0249174

A panel of 8-lncRNA predicts prognosis of breast cancer patients and migration of breast cancer cells
Cited by: 8
Author(s): Lili Zhu, Kang Cui, Lanling Weng, Yu Pan, Yabing Du, Tengfei Zhang, Hong Liu, Bingjie Li, Wei Ma
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-020-02336-0

Morpho-physiological integrators, transcriptome and coexpression network analyses signify the novel molecular signatures associated with axillary bud in chrysanthemum
Cited by: 10
Author(s): Sagheer Ahmad, Cunquan Yuan, Qingqing Yang, Yujie Yang, Tangren Cheng, Jia Wang, Huitang Pan, Qixiang Zhang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-86504-8

Identification and external validation of a prognostic signature associated with DNA repair genes in gastric cancer
Cited by: 5
Author(s): Shimin Chen, Wenbo Liu, Haojun Yu
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.615416

Correlations Between Intestinal Microbial Community and Hematological Profile in Native Tibetans and Han Immigrants
Cited by: 7
Author(s): Yan Ma, Qin Ga, Ri-Li Ge, Shuang Ma
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-88363-9

Transcriptional signatures in prefrontal cortex confer vulnerability versus resilience to food and cocaine addiction-like behavior
Cited by: 11
Author(s): Mohit Navandar, Elena Martín‐García, Rafaël Maldonado, Beat Lutz, Susanne Gerber, Iñigo Ruı́z de Azúa
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00627

High Levels of HIST1H2BK in Low-Grade Glioma Predicts Poor Prognosis: A Study Using CGGA and TCGA Data
Cited by: 20
Author(s): Weidong Liu, Zhentao Xu, Jie Zhou, Shuang Xing, Zhiqiang Li, Xu Gao, Shiyu Feng, Yi Xiao
Software Mentions: 4
Published: over 6 years ago

10.1093/database/bau092

Renal Gene Expression Database (RGED): a relational database of gene expression profiles in kidney disease
Cited by: 18
Author(s): Qingzhou Zhang, Bo Yang, Xujiao Chen, Jing Xu, Changlin Mei, Zhiguo Mao
Software Mentions: 4
Published: almost 12 years ago

10.1128/AAC.01207-19

Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling
Cited by: 50
Author(s): Aubrie O’Rourke, Sinem Beyhan, Yongwook Choi, Pavel Morales, Agnes P. Chan, Josh L. Espinoza, Chris L. Dupont, Kirsten J. Meyer, Amy L. Spoering, Kim Lewis, William C. Nierman, Karen E. Nelson
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.716921

HNRNPA2B1, as a m6A Reader, Promotes Tumorigenesis and Metastasis of Oral Squamous Cell Carcinoma
Cited by: 22
Author(s): Feiya Zhu, Tianru Yang, Meiling Yao, Ting Shen, Changyun Fang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0149171

RNA-Seq Reveals the Angiogenesis Diversity between the Fetal and Adults Bone Mesenchyme Stem Cell
Cited by: 2
Author(s): Xin Zhao, Yingmin Han, Yu Liang, Chao Nie, Jian Wang
Software Mentions: 4
Published: over 10 years ago

10.1038/s41419-020-02884-1

NLRP7 plays a functional role in regulating BMP4 signaling during differentiation of patient-derived trophoblasts
Cited by: 18
Author(s): Aybuke Alici-Garipcan, Burcu Özçimen, Ilke Süder, Volkan Ülker, Tamer T. Önder, Nesrin Özören
Software Mentions: 4
Published: about 6 years ago

10.3390/cells9081846

Caenorhabditis elegans Deficient in DOT-1.1 Exhibit Increases in H3K9me2 at Enhancer and Certain RNAi-Regulated Regions
Cited by: 6
Author(s): Ruben Esse, Alla Grishok
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0223692

Elevated serum alpha-1 antitrypsin is a major component of GlycA-associated risk for future morbidity and mortality
Cited by: 12
Author(s): Scott C. Ritchie, Johannes Kettunen, Marta Brożyńska, Artika P. Nath, Aki S. Havulinna, Satu Männistö, Markus Perola, Veikko Salomaa, Mika Ala‐Korpela, Gad Abraham, Peter Würtz, Michael Inouye
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-021-90105-w

Transcriptomic analysis of atopic dermatitis in African Americans is characterized by Th2/Th17-centered cutaneous immune activation
Cited by: 22
Author(s): Shannon Wongvibulsin, Nishadh Sutaria, Suraj Kannan, Martin P. Alphonse, Micah Belzberg, Kyle Williams, Isabelle Brown, Justin Choi, Youkyung S. Roh, Thomas Pritchard, Raveena Khanna, Amarachi Eseonu, Jaroslaw Jedrych, Carly Dillen, Madan M. Kwatra, Anna L. Chien, Nathan K. Archer, Luis A. Garza, Xinzhong Dong, Sewon Kang, Shawn G. Kwatra
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-90653-1

Totipotency of mouse zygotes extends to single blastomeres of embryos at the four-cell stage
Cited by: 17
Author(s): Marino Maemura, Hiroaki Taketsuru, Yuki Nakajima, Ruiqi Shao, Ayaka Kakihara, Jumpei Nogami, Yasuyuki Ohkawa, Yu Ichi Tsukada
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-90827-x

Ensemble machine learning of factors influencing COVID-19 across US counties
Cited by: 11
Author(s): David McCoy, Whitney Mgbara, Nir Horvitz, Wayne M. Getz, Alan Hubbard
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0212577

Developmental fluoxetine exposure in zebrafish reduces offspring basal cortisol concentration via life stage-dependent maternal transmission
Cited by: 15
Author(s): Rubén Martínez, Marilyn N. Vera-Chang, Majd Haddad, J.B.A. van Zon, Laia Navarro‐Martín, Vance L. Trudeau, Jan A. Mennigen
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0216834

TCGA based integrated genomic analyses of ceRNA network and novel subtypes revealing potential biomarkers for the prognosis and target therapy of tongue squamous cell carcinoma
Cited by: 19
Author(s): Zaiye Li, Canhua Jiang, Yongxiang Yuan
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.102824

Profiles of immune cell infiltration and immune-related genes in the tumor microenvironment of osteosarcoma
Cited by: 103
Author(s): Chi Zhang, Jinghui Zheng, Zong-Han Lin, Haoyuan Lv, Zhuo-Miao Ye, Yueping Chen, Xiaoyun Zhang
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2229-14-169

RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications
Cited by: 190
Author(s): Lei Wang, Chenlong Cao, Qibin Ma, Qiaoying Zeng, Haifeng Wang, Zhihao Cheng, Genfeng Zhu, Ji Qi, Hong Mā, Hai Nian, Yingxiang Wang
Software Mentions: 4
Published: over 12 years ago

10.3389/fmicb.2021.668644

Ecological Divergence Within the Enterobacterial Genus Sodalis: From Insect Symbionts to Inhabitants of Decomposing Deadwood
Cited by: 9
Author(s): Vojtěch Tláskal, Victor Satler Pylro, Lucia Žifčáková, Petr Baldrián
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.579290

Spatiotemporal Patterns in Diversity and Assembly Process of Marine Protist Communities of the Changjiang (Yangtze River) Plume and Its Adjacent Waters
Cited by: 8
Author(s): Xin Guo, Lianghuan Wu, Lingfeng Huang
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0237775

Diet type influences the gut microbiome and nutrient assimilation of Genetically Improved Farmed Tilapia (Oreochromis niloticus)
Cited by: 30
Author(s): Lara Parata, Debashish Mazumder, Jesmond Sammut, Suhelen Egan
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0188640

Epidemiological and genetic characteristics of EV71 in hand, foot, and mouth disease in Guangxi, southern China, from 2010 to 2015
Cited by: 27
Author(s): Minmei Chen, Yu‐Min Ju, Zhiping Xie, Zhou Kai-jiao, Yi Tan, Mo JianJun
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12868-021-00622-7

Construction of competitive endogenous RNA network reveals regulatory role of long non-coding RNAs in intracranial aneurysm
Cited by: 7
Author(s): Yutong Pan, Jianing Lu, Biao Yang, Cameron Lenahan, Jianmin Zhang, Anwen Shao
Software Mentions: 4
Published: over 5 years ago

10.1186/s13054-020-2788-8

Dynamic LTR retrotransposon transcriptome landscape in septic shock patients
Cited by: 5
Author(s): Marine Mommert, Olivier Tabone, Audrey Guichard, Guy Oriol, Elisabeth Cerrato, Mélanie Denizot, Valérie Cheynet, Alexandre Pachot, Alain Lepape, Guillaume Monneret, Fabienne Venet, Karen Brengel‐Pesce, Julien Textoris, François Mallet
Software Mentions: 4
Published: over 6 years ago

10.1186/s12866-020-01990-6

The effects of exopolysaccharides and exopolysaccharide-producing Lactobacillus on the intestinal microbiome of zebrafish (Danio rerio)
Cited by: 17
Author(s): Chenchen Ma, Hongyang Guo, Haibo Chang, Shi Huang, Shuaiming Jiang, Dongxue Huo, Jiachao Zhang, Xiaopeng Zhu
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0240975

RNA sequencing of whole blood in dogs with primary immune-mediated hemolytic anemia (IMHA) reveals novel insights into disease pathogenesis
Cited by: 5
Author(s): Corie Borchert, Adam Herman, Megan Roth, Aimee C. Brooks, Steven G. Friedenberg
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0223031

Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological species
Cited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-92517-0

Impact of a bacterial consortium on the soil bacterial community structure and maize (Zea mays L.) cultivation
Cited by: 13
Author(s): Laura Natali Afanador-Barajas, Yendi E. Navarro‐Noya, Marco Luna‐Guido, Luc Dendooven
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.586820

Tumor Derived SIGLEC Family Genes May Play Roles in Tumor Genesis, Progression, and Immune Microenvironment Regulation
Cited by: 14
Author(s): Chen Zheng, Ming Yu, Lei Guo, Bo Zhang, Shuang Liu, Wentao Zhang, Bing Zhou, Jiuliang Yan, Qianni Ma, Zhixu Yang, Xiao Ye, Yongfeng Xu, Hui Li, Qing–Hai Ye
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40478-020-00968-9

Global alterations to the choroid plexus blood-CSF barrier in amyotrophic lateral sclerosis
Cited by: 29
Author(s): J. Saul, Elizabeth Hutchins, Rebecca Reiman, Michelle Saul, Lyle W. Ostrow, Brent T. Harris, Kendall Van Keuren‐Jensen, Robert Bowser, Nadine Bakkar
Software Mentions: 4
Published: about 6 years ago

10.3390/ijms21093129

Bisphenol A Exposure in utero Disrupts Hypothalamic Gene Expression Particularly Genes Suspected in Autism Spectrum Disorders and Neuron and Hormone Signaling
Cited by: 18
Author(s): Anne De Piante Henriksen, Alejandro Andrade, Erin P. Harris, Emilie F. Rissman, Jennifer T. Wolstenholme
Software Mentions: 4
Published: over 6 years ago

10.1038/s42003-021-02587-z

Probiotic Bifidobacterium longum supplied with methimazole improved the thyroid function of Graves’ disease patients through the gut-thyroid axis
Cited by: 14
Author(s): Dongxue Huo, Chaoping Cen, Haibo Chang, Qianying Ou, Shuaiming Jiang, Pan Yingjie, Kaining Chen, Jiachao Zhang
Software Mentions: 4
Published: about 5 years ago

10.1111/cmi.12397

The co‐transcriptome of uropathogenic<scp><i>E</i></scp><i>scherichia coli</i>‐infected mouse macrophages reveals new insights into host–pathogen interactions
Cited by: 62
Author(s): Charalampos Harris Mavromatis, Nilesh J. Bokil, Makrina Totsika, Asha Kakkanat, Kolja Schaale, Carlo Vittorio Cannistraci, Tae Woo Ryu, Scott A. Beatson, Glen C. Ulett, Mark A. Schembri, Matthew J. Sweet, Timothy Ravasi
Software Mentions: 4
Published: over 11 years ago

10.1186/s12859-021-04301-6

neoDL: a novel neoantigen intrinsic feature-based deep learning model identifies IDH wild-type glioblastomas with the longest survival
Cited by: 3
Author(s): Taixiang Sun, Yufei He, Wendong Li, Guang Liu, Lin Li, Lu Wang, Zixuan Xiao, Xiaohan Han, Hao Wen, Yong Liu, Yifan Chen, Haoyu Wang, Jing Li, Yubo Fan, Wei Zhang, Jing Zhang
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0242382

Molecular assessment and transcriptome profiling of wild fish populations of Oryzias mekongensis and O. songkhramensis (Adrianichthyidae: Beloniformes) from Thailand
Cited by: 0
Author(s): Arin Ngamniyom
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00401-020-02176-0

Congenic expression of poly-GA but not poly-PR in mice triggers selective neuron loss and interferon responses found in C9orf72 ALS
Cited by: 36
Author(s): Katherine D. LaClair, Qihui Zhou, Meike Michaelsen, Benedikt Wefers, Monika S. Brill, Aleksandar Janjic, Birgit Rathkolb, Daniel Farny, Mikolaj Cygan, Martin Hrabě de Angelis, Wolfgang Wurst, Manuela Neumann, Wolfgang Enard, Thomas Misgeld, Thomas Arzberger, Dieter Edbauer
Software Mentions: 4
Published: about 6 years ago

10.1186/s12920-021-00923-0

Screening of gene markers related to the prognosis of metastatic skin cutaneous melanoma based on Logit regression and survival analysis
Cited by: 3
Author(s): Guoliang Jia, Zheyu Song, Zhijun Xu, Youmao Tao, Yue Wu, Xiaoyu Wang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0104355

Copy Number Variation in Thai Population
Cited by: 25
Author(s): Bhoom Suktitipat, Chaiwat Naktang, Wuttichai Mhuantong, Tularak Thitima, Paramita Artiwet, Pasomsap Ekawat, Wallaya Jongjaroenprasert, Suthat Fuchareon, Surakameth Mahasirimongkol, Wasun Chantratita, Boonsit Yimwadsana, Varodom Charoensawan, Natini Jinawath
Software Mentions: 4
Published: about 12 years ago

10.3389/fonc.2020.628608

Upregulation of Long Non-Coding RNA GCC2-AS1 Facilitates Malignant Phenotypes and Correlated With Unfavorable Prognosis for Lung Adenocarcinoma
Cited by: 6
Author(s): Fengqiang Yu, Mingqiang Liang, Weidong Wu, Yu Huang, Juanjuan Zheng, Bin Zheng, Chun Chen
Software Mentions: 4
Published: over 5 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572