Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.3389/fgene.2020.00176
Integrative Analysis of MicroRNA and Gene Interactions for Revealing Candidate Signatures in Prostate Cancer
Cited by: 34
Author(s): Jingchao Wei, Yinghao Yin, Qiancheng Deng, Jun Zhou, Yong Wang, Guangming Yin, Jianfu Yang, Yuxin Tang
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pgen.1009466
activin-2 is required for regeneration of polarity on the planarian anterior-posterior axis
Cited by: 13
Author(s): Jennifer Cloutier, Conor L. McMann, Isaac M. Oderberg, Peter W. Reddien
Software Mentions: 4
Published: over 3 years ago
10.18632/oncotarget.14286
Comprehensive tissue-specific gene set enrichment analysis and transcription factor analysis of breast cancer by integrating 14 gene expression datasets
Cited by: 23
Author(s): Wen‐Xing Li, Kan He, Ling Tang, Shao‐Xing Dai, Gong‐Hua Li, Wen Lv, Yicheng Guo, Sanqi An, Guoying Wu, Dahai Liu, Jing‐Fei Huang
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12935-019-0975-y
Identification of differentially expressed circRNAs and a novel hsa_circ_0000144 that promote tumor growth in gastric cancer
Cited by: 27
Author(s): Jianming Wei, Jinmiao Wang, Xibo Gao, Feng Qi
Software Mentions: 4
Published: about 5 years ago
10.1186/s12935-021-01792-4
Identification of a prognostic and therapeutic immune signature associated with hepatocellular carcinoma
Cited by: 42
Author(s): Yanan Peng, Chang Liu, Mengting Li, Wenjie Li, Mengna Zhang, Xiang Jiang, Ying Chang, Lan Liu, Wei Fan, Qiu Zhao
Software Mentions: 4
Published: almost 4 years ago
10.1155/2021/7569168
A Robust Panel Based on Mitochondrial Localized Proteins for Prognostic Prediction of Lung Adenocarcinoma
Cited by: 0
Author(s): Weifeng Chen, Jingyao Wang, Qiumei Zhao, Dandan Liu, Donglin Sun, Ningxia Xie, Haohao Zhang, Deji Ye, Chaoyang Li, Yongzhong Liu, Xiaoren Zhang
Software Mentions: 4
Published: about 3 years ago
10.1186/s13048-021-00802-3
Small RNA sequencing reveals distinct nuclear microRNAs in pig granulosa cells during ovarian follicle growth
Cited by: 7
Author(s): Derek Toms, Bo Pan, Yinshan Bai, Julang Li
Software Mentions: 4
Published: over 3 years ago
10.1186/s12862-021-01762-4
Genome-wide characterization of PEBP family genes in nine Rosaceae tree species and their expression analysis in P. mume
Cited by: 10
Author(s): Man Zhang, Ping Li, Xiao-lan Yan, Jia Wang, Tangren Cheng, Qixiang Zhang
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12935-021-02045-0
Identification and validation of a novel glycolysis-related gene signature for predicting the prognosis in ovarian cancer
Cited by: 17
Author(s): Jing Yu, Tingting Liu, Leilei Liang, Jing Liu, Hong‐Qing Cai, Jia Zeng, Tiantian Wang, Jian Li, Lin Xiu, Ning Li, Lingying Wu
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pgen.1008073
Genetic determinants of gut microbiota composition and bile acid profiles in mice
Cited by: 67
Author(s): Julia H. Kemis, Vanessa Linke, Kelsey L Barrett, Frederick J. Boehm, Lindsay L. Traeger, Mark P. Keller, Mary E. Rabaglia, Kathryn L. Schueler, Donald S. Stapleton, Daniel M. Gatti, Gary A. Churchill, Daniel Amador‐Noguez, John N. Russell, Brian S. Yandell, Karl W. Broman, Joshua J. Coon, Alan D. Attie, Federico E. Rey
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pgen.1006778
Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness
Cited by: 11
Author(s): Adi Hendler, Edgar M. Medina, Anastasiya Kishkevich, Mehtap Abu-Qarn, Steffi Klier, Nicolas E. Buchler, Robertus A.M. de Bruin, Amir Aharoni
Software Mentions: 4
Published: over 7 years ago
10.1186/s12872-020-01653-4
Identification of key genes in atrial fibrillation using bioinformatics analysis
Cited by: 4
Author(s): Yueheng Liu, Rui Tang, Ye Zhao, Xuan Jiang, Yuchao Wang, Tingting Gu
Software Mentions: 4
Published: over 4 years ago
10.3389/fgene.2021.608936
Whole Genome Level Analysis of the Wnt and DIX Gene Families in Mice and Their Coordination Relationship in Regulating Cardiac Hypertrophy
Cited by: 6
Author(s): Zhongchao Gai, Yujiao Wang, Lü Tian, Guoli Gong, Jieqiong Zhao
Software Mentions: 4
Published: over 3 years ago
10.3390/toxins13010025
Can Cyanobacterial Diversity in the Source Predict the Diversity in Sludge and the Risk of Toxin Release in a Drinking Water Treatment Plant?
Cited by: 16
Author(s): Farhad Jalili, Hana Trigui, Juan Maldonado, Sarah Dorner, Arash Zamyadi, Ben Shapiro, Yves Terrat, Nathalie Fortin, Sébastien Sauvé, Michèle Prévost
Software Mentions: 4
Published: almost 4 years ago
10.3389/fgene.2021.684281
A Robust Seven-Gene Signature Associated With Tumor Microenvironment to Predict Survival Outcomes of Patients With Stage III–IV Lung Adenocarcinoma
Cited by: 3
Author(s): Hao Zhao, Xuening Zhang, Liting Guo, Songhe Shi, Ciyong Lu
Software Mentions: 4
Published: about 3 years ago
10.3390/ani11071849
Environmental Streptococcus uberis Associated with Clinical Mastitis in Dairy Cows: Virulence Traits, Antimicrobial and Biocide Resistance, and Epidemiological Typing
Cited by: 10
Author(s): Norhan K. Abd El-Aziz, Ahmed M. Ammar, Hend M. El Damaty, Rehab A. Abd Elkader, Hosam A. Saad, Waleed El-Kazzaz, Eman Khalifa
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2020.599834
An Integrated Transcriptome Analysis Reveals IGFBP7 Upregulation in Vasculature in Traumatic Brain Injury
Cited by: 3
Author(s): Jianhao Wang, Xiangyi Deng, Yuan Xie, Jiefu Tang, Ziwei Zhou, Fan Yang, Qiyuan He, Qingze Cao, Lei Zhang, Liqun He
Software Mentions: 4
Published: almost 4 years ago
10.3390/nu13010205
Parenteral Fish-Oil Containing Lipid Emulsions Limit Initial Lipopolysaccharide-Induced Host Immune Responses in Preterm Pigs
Cited by: 5
Author(s): William Yakah, David Ramiro-Cortijo, Pratibha Singh, J. Howard Brown, Barbara J. Stoll, Madhulika Kulkarni, Berthe C Oosterloo, Doug Burrin, Krishna Rao Maddipati, Raina N. Fichorova, Steven D. Freedman, Camilia R. Martin
Software Mentions: 4
Published: almost 4 years ago
10.1155/2020/4348371
<i>DHX36</i>, <i>BAX</i>, and <i>ARPC1B</i> May Be Critical for the Diagnosis and Treatment of Tuberculosis
Cited by: 3
Author(s): Yunli Zhang, Yanming Liu, Hongling Li, Qingxia Liu, Wei Wang, Zijuan Jian, Wenen Liu
Software Mentions: 4
Published: over 4 years ago
10.1590/1414-431X2021e11372
Profiles of immune infiltration in abdominal aortic aneurysm and their associated marker genes: a gene expression-based study
Cited by: 5
Author(s): Tan Li, Tianlong Wang, Xin Zhao
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pntd.0009425
Profound downregulation of neural transcription factor Npas4 and Nr4a family in fetal mice neurons infected with Zika virus
Cited by: 3
Author(s): Sergio P. Alpuche-Lazcano, James Saliba, Vivian Vasconcelos Costa, Gabriel Henrique Campolina-Silva, Fernanda Martins Marim, Lucas S. Ribeiro, Volker Blank, Andrew J. Mouland, Mauro M. Teixeira, Anne Gatignol
Software Mentions: 4
Published: over 3 years ago
10.1007/s12975-020-00863-4
Disruptions of Anaerobic Gut Bacteria Are Associated with Stroke and Post-stroke Infection: a Prospective Case–Control Study
Cited by: 60
Author(s): Bastiaan W. Haak, Willeke F. Westendorp, Tjitske S. R. van Engelen, Xanthe Brands, Matthijs C. Brouwer, Jan-Dirk Vermeij, Floor Hugenholtz, Aswin Verhoeven, Rico Derks, Martin Giera, Paul J. Nederkoorn, Willem M. de Vos, Diederik van de Beek, W. Joost Wiersinga
Software Mentions: 4
Published: about 4 years ago
10.1186/s12967-021-03057-0
Establishment of a novel glycolysis-related prognostic gene signature for ovarian cancer and its relationships with immune infiltration of the tumor microenvironment
Cited by: 18
Author(s): Jianlei Bi, Fangfang Bi, Xue Pan, Qing Yang
Software Mentions: 4
Published: about 3 years ago
10.1038/s41598-019-49817-3
An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo
Cited by: 35
Author(s): Steffen Israel, Markus Ernst, Olympia E. Psathaki, Hannes C.A. Drexler, Ellen Casser, Yutaka Suzuki, Wojciech Makałowski, Michele Boiani, Georg Fuellen, Leila Taher
Software Mentions: 4
Published: about 5 years ago
10.3389/fgene.2020.00294
Methylation-Driven Genes Identified as Novel Prognostic Indicators for Thyroid Carcinoma
Cited by: 12
Author(s): Liting Lv, Liyu Cao, Guoqing Hu, Qinyan Shen, Jiaming Wu
Software Mentions: 4
Published: over 4 years ago
10.7150/jca.51321
AURKA and FAM83A are prognostic biomarkers and correlated with Tumor-infiltrating Lymphocytes in smoking related Lung Adenocarcinoma
Cited by: 7
Author(s): Mengyu Zhang, Huo Chen, Yingxiao Jiang, Jianyu Liu, Yi-Can Yang, Yunhong Yin, Yi-Qing Qu
Software Mentions: 4
Published: almost 4 years ago
10.18632/aging.103127
Identification of HMG-box family establishes the significance of SOX6 in the malignant progression of glioblastoma
Cited by: 7
Author(s): Lan Jiang, Hui Yang, Tianbing Chen, Xiaolong Zhu, Jingjing Ye, Kun Lv
Software Mentions: 4
Published: over 4 years ago
10.1186/s13068-015-0248-5
Genome-wide analysis of the endoplasmic reticulum stress response during lignocellulase production in Neurospora crassa
Cited by: 52
Author(s): Fan Feng, Guoli Ma, Jingen Li, Qian Liu, J. Philipp Benz, Chaoguang Tian, Yanhe Ma
Software Mentions: 4
Published: over 9 years ago
10.3389/fgene.2020.597459
Pearl Sac Gene Expression Profiles Associated With Pearl Attributes in the Silver-Lip Pearl Oyster, Pinctada maxima
Cited by: 9
Author(s): Carmel McDougall, Felipe Aguilera, Ali Shokoohmand, Patrick Moase, Bernard M. Degnan
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0249174
A panel of 8-lncRNA predicts prognosis of breast cancer patients and migration of breast cancer cells
Cited by: 8
Author(s): Lili Zhu, Kang Cui, Lanling Weng, Yu Pan, Yabing Du, Tengfei Zhang, Hong Liu, Bingjie Li, Wei Ma
Software Mentions: 4
Published: over 3 years ago
10.1042/BSR20201261
Construction of a novel prognostic-predicting model correlated to ovarian cancer
Cited by: 3
Author(s): Wei-Chun Tang, Jie Li, Xinxia Chang, Lizhou Jia, Qi Tang, Ying Wang, Yanli Zheng, Lichao Sun, Zhenqing Feng
Software Mentions: 4
Published: over 4 years ago
10.1042/BSR20201427
Mining novel cell glycolysis related gene markers that can predict the survival of colon adenocarcinoma patients
Cited by: 16
Author(s): Sihan Chen, Guodong Cao, Wei Wu, Yida Lu, Xueling He, Lei Yang, Ke Chen, Bo Chen, Maoming Xiong
Software Mentions: 4
Published: over 4 years ago
10.1042/BSR20201491
Exploration of immune-related genes in high and low tumor mutation burden groups of chromophobe renal cell carcinoma
Cited by: 9
Author(s): Lei Li, Xi Chen, Lu Hao, Qiuyan Chen, Haosheng Liu, Qing Zhou
Software Mentions: 4
Published: over 4 years ago
10.18632/aging.102782
A nomogram combining long non-coding RNA expression profiles and clinical factors predicts survival in patients with bladder cancer
Cited by: 30
Author(s): Yifan Wang, Du Li, Xuemei Yang, Juan Li, Peilong Li, Yinghui Zhao, Weili Duan, Yingjie Chen, Yunshan Wang, Hongzhi Mao, Chuanxin Wang
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-019-40495-9
Differential gene expression induced by Verteporfin in endometrial cancer cells
Cited by: 8
Author(s): Lisa Bang, Venkata Ramesh Dasari, Dokyoon Kim, Radhika Gogoi
Software Mentions: 4
Published: over 5 years ago
10.3389/fgene.2019.00217
Genomic, Transcriptomic, and Epigenomic Features Differentiate Genes That Are Relevant for Muscular Polyunsaturated Fatty Acids in the Common Carp
Cited by: 18
Author(s): Hanyuan Zhang, Peng Xu, Yanliang Jiang, Zixia Zhao, Jianxin Feng, Ruyu Tai, Chuanju Dong, Jian Xu
Software Mentions: 4
Published: over 5 years ago
10.1128/AAC.01207-19
Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling
Cited by: 50
Author(s): Aubrie O’Rourke, Sinem Beyhan, Yongwook Choi, Pavel Morales, Agnes P. Chan, Josh L. Espinoza, Chris L. Dupont, Kirsten J. Meyer, Amy L. Spoering, Kim Lewis, William C. Nierman, Karen E. Nelson
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-018-31618-9
Comparative transcriptome analysis to identify putative genes involved in thymol biosynthesis pathway in medicinal plant Trachyspermum ammi L.
Cited by: 21
Author(s): Mehdi Soltani Howyzeh, Seyed Ahmad Sadat Noori, Vahid Shariati J, Mahboubeh Amiripour
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0149171
RNA-Seq Reveals the Angiogenesis Diversity between the Fetal and Adults Bone Mesenchyme Stem Cell
Cited by: 2
Author(s): Xin Zhao, Yingmin Han, Yu Liang, Chao Nie, Jian Wang
Software Mentions: 4
Published: almost 9 years ago
10.3389/fcell.2021.649168
Pan-Cancer Genome-Wide DNA Methylation Analyses Revealed That Hypermethylation Influences 3D Architecture and Gene Expression Dysregulation in HOXA Locus During Carcinogenesis of Cancers
Cited by: 3
Author(s): Gang Liu, Zhenhao Liu, Xiaomeng Sun, Xiaoqiong Xia, Yunhe Liu, Lei Liu
Software Mentions: 4
Published: over 3 years ago
10.1042/BSR20194337
Mining TCGA database for tumor mutation burden and their clinical significance in bladder cancer
Cited by: 71
Author(s): Jia Lv, Yongze Zhu, Alin Ji, Qi Zhang, Guodong Liao
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0223692
Elevated serum alpha-1 antitrypsin is a major component of GlycA-associated risk for future morbidity and mortality
Cited by: 12
Author(s): Scott C. Ritchie, Johannes Kettunen, Marta Brożyńska, Artika P. Nath, Aki S. Havulinna, Satu Männistö, Markus Perola, Veikko Salomaa, Mika Ala‐Korpela, Gad Abraham, Peter Würtz, Michael Inouye
Software Mentions: 4
Published: about 5 years ago
10.3390/ijms22041591
Reciprocal Changes in miRNA Expression with Pigmentation and Decreased Proliferation Induced in Mouse B16F1 Melanoma Cells by l-Tyrosine and 5-Bromo-2′-Deoxyuridine
Cited by: 4
Author(s): Hernán Mauricio Rivera, Esther Natalia Muñoz, Daniel Osuna, Mauro Florez, Michael Carvajal, Luis Alberto Gómez
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-018-28986-7
A monocyte gene expression signature in the early clinical course of Parkinson’s disease
Cited by: 35
Author(s): J Schlachetzki, Iryna Prots, Jenhan Tao, Hyun Bae Chun, Kaoru Saijo, David Gosselin, Beate Winner, Christopher K. Glass
Software Mentions: 4
Published: over 6 years ago
10.1128/mSphere.01237-20
Soil Health Management Enhances Microbial Nitrogen Cycling Capacity and Activity
Cited by: 16
Author(s): Jialin Hu, Virginia L. Jin, Julie Y. M. Konkel, Sean M. Schaeffer, Liesel G Schneider, Jennifer M. DeBruyn
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0212577
Developmental fluoxetine exposure in zebrafish reduces offspring basal cortisol concentration via life stage-dependent maternal transmission
Cited by: 15
Author(s): Rubén Martínez, Marilyn N. Vera-Chang, Majd Haddad, J.B.A. van Zon, Laia Navarro‐Martín, Vance L. Trudeau, Jan A. Mennigen
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pone.0216834
TCGA based integrated genomic analyses of ceRNA network and novel subtypes revealing potential biomarkers for the prognosis and target therapy of tongue squamous cell carcinoma
Cited by: 19
Author(s): Zaiye Li, Canhua Jiang, Yongxiang Yuan
Software Mentions: 4
Published: over 5 years ago
10.1128/mSphere.00936-20
Randomized Controlled Trial of Oral Vancomycin Treatment in Clostridioides difficile-Colonized Patients
Cited by: 18
Author(s): Skye Fishbein, Tiffany Hink, Kimberly A. Reske, Candice Cass, Emily Struttmann, Zainab Hassan Iqbal, Sondra Seiler, Jennie H. Kwon, Carey‐Ann D. Burnham, Gautam Dantas, Erik R. Dubberke
Software Mentions: 4
Published: over 3 years ago
10.3390/biom11091286
Lipocalin 2 Deficiency Restrains Aging-Related Reshaping of Gut Microbiota Structure and Metabolism
Cited by: 2
Author(s): Xing‐Biao Qiu, Chi Chen, Xiaoli Chen
Software Mentions: 4
Published: about 3 years ago
10.1186/s12885-020-07513-w
Ovarian cancer cells direct monocyte differentiation through a non-canonical pathway
Cited by: 5
Author(s): Kaitlin C. Fogg, Andrew Miller, Ying Liu, Will Flanigan, Alyssa Walker, Amy O'Shea, Christina Kendziorski, Pamela K. Kreeger
Software Mentions: 4
Published: about 4 years ago
10.1186/s12885-020-07702-7
The effect of a novel glycolysis-related gene signature on progression, prognosis and immune microenvironment of renal cell carcinoma
Cited by: 35
Author(s): Fangshi Xu, Yawen Guan, Li Xue, Sheng‐Li Huang, Ke Gao, Zhen Yang, Tie Chong
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0237775
Diet type influences the gut microbiome and nutrient assimilation of Genetically Improved Farmed Tilapia (Oreochromis niloticus)
Cited by: 30
Author(s): Lara Parata, Debashish Mazumder, Jesmond Sammut, Suhelen Egan
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0188640
Epidemiological and genetic characteristics of EV71 in hand, foot, and mouth disease in Guangxi, southern China, from 2010 to 2015
Cited by: 27
Author(s): Minmei Chen, Yu‐Min Ju, Zhiping Xie, Zhou Kai-jiao, Yi Tan, Mo JianJun
Software Mentions: 4
Published: almost 7 years ago
10.1128/mSphere.00009-21
Bacterial Quorum-Sensing Signal Arrests Phytoplankton Cell Division and Impacts Virus-Induced Mortality
Cited by: 16
Author(s): Scott Black Pollara, Jamie W. Becker, Brook L. Nunn, Rene Boiteau, Daniel J. Repeta, Miranda C. Mudge, Grayton Downing, Davis Chase, Elizabeth L. Harvey, Kristen E. Whalen
Software Mentions: 4
Published: over 3 years ago
10.1111/jcmm.15505
Asiaticoside might attenuate bleomycin‐induced pulmonary fibrosis by activating cAMP and Rap1 signalling pathway assisted by A2AR
Cited by: 18
Author(s): Jing Luo, Ting Zhang, Ce Zhu, Junwei Sun, Wenjing Zhu, Wenxiu Ai, Xiaoying Huang, Xiaobing Wang
Software Mentions: 4
Published: over 4 years ago
10.1128/mSystems.00211-17
Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese
Cited by: 55
Author(s): Andrea S. Bertuzzi, Aaron M. Walsh, Jeremiah J. Sheehan, Paul D. Cotter, Fiona Crispie, P.L.H. McSweeney, Kieran N. Kilcawley, Mary C. Rea
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pone.0240975
RNA sequencing of whole blood in dogs with primary immune-mediated hemolytic anemia (IMHA) reveals novel insights into disease pathogenesis
Cited by: 5
Author(s): Corie Borchert, Adam Herman, Megan Roth, Aimee C. Brooks, Steven G. Friedenberg
Software Mentions: 4
Published: about 4 years ago
10.1371/journal.pone.0223031
Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological species
Cited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: almost 5 years ago
10.1002/advs.201903366
Transferrin Receptor 1 Regulates Thermogenic Capacity and Cell Fate in Brown/Beige Adipocytes
Cited by: 33
Author(s): Jin Li, Xiaohan Pan, Guihua Pan, Zijun Song, Yao He, Susu Zhang, Xueru Ye, Yang Xiang, Enjun Xie, Xinhui Wang, Xudong Mai, Xing Yin, Biyao Tang, Xuan Shu, Pengyu Chen, Xiaoshuang Dai, Ye Tian, Liheng Yao, Mulan Han, Guohuan Xu, Huijie Zhang, Jia Sun, Hong Chen, Fudi Wang, Junxia Min, Liwei Xie
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-018-27650-4
MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides
Cited by: 4
Author(s): Emma Timmins‐Schiffman, Molly P. Mikan, Ying S. Ting, H. Rodger Harvey, Brook L. Nunn
Software Mentions: 4
Published: over 6 years ago
10.1128/mSystems.00205-17
Interaction between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer
Cited by: 91
Author(s): Ce Yuan, Michael B. Burns, Subbaya Subramanian, Ran Blekhman
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-018-25998-1
FACS-Seq analysis of Pax3-derived cells identifies non-myogenic lineages in the embryonic forelimb
Cited by: 8
Author(s): Arun Singh, Cheng-Chi Chang, Hsiao-Yen Ma, Stephen A. Ramsey, Theresa M. Filtz, Chrissa Kioussi
Software Mentions: 4
Published: over 6 years ago
10.3389/fgene.2021.700489
Comparative Transcriptome Analysis of Milk Somatic Cells During Lactation Between Two Intensively Reared Dairy Sheep Breeds
Cited by: 4
Author(s): Sofia Michailidou, Athanasios Ι. Gelasakis, Georgios Banos, G. Arsenos, Anagnostis Argiriou
Software Mentions: 4
Published: over 3 years ago
10.3389/fphar.2021.678256
Dysregulated lncRNAs are Involved in the Progress of Sepsis by Constructing Regulatory Networks in Whole Blood Cells
Cited by: 5
Author(s): Yanwei Cheng, Xue Cao, Jiange Zhang, Dong Chen, Juan Zhu, Lijun Xu, Lijie Qin
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-018-25110-7
Transcriptional Profiling of Somatostatin Interneurons in the Spinal Dorsal Horn
Cited by: 43
Author(s): Alexander Chamessian, Michael Young, Yawar J. Qadri, Temugin Berta, Ru-Rong Ji, Thomas Van de Ven
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pone.0242382
Molecular assessment and transcriptome profiling of wild fish populations of Oryzias mekongensis and O. songkhramensis (Adrianichthyidae: Beloniformes) from Thailand
Cited by: 0
Author(s): Arin Ngamniyom
Software Mentions: 4
Published: about 4 years ago
10.18632/aging.202781
One potential biomarker for teratozoospermia identified by in-depth integrative analysis of multiple microarray data
Cited by: 3
Author(s): Baoquan Han, Lu Wang, Shuai Yu, Wei Ge, Yaqi Li, Hui Jiang, Wei Shen, Zhongyi Sun
Software Mentions: 4
Published: over 3 years ago
10.1155/2021/8848227
A Novel Autophagy-Related lncRNA Gene Signature to Improve the Prognosis of Patients with Melanoma
Cited by: 10
Author(s): Yi Ding, Li Tian, Min Li, Tuersong Tayier, Meilin Zhang, Long Chen, Shumei Feng
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0104355
Copy Number Variation in Thai Population
Cited by: 25
Author(s): Bhoom Suktitipat, Chaiwat Naktang, Wuttichai Mhuantong, Tularak Thitima, Paramita Artiwet, Pasomsap Ekawat, Wallaya Jongjaroenprasert, Suthat Fuchareon, Surakameth Mahasirimongkol, Wasun Chantratita, Boonsit Yimwadsana, Varodom Charoensawan, Natini Jinawath
Software Mentions: 4
Published: over 10 years ago
10.1038/s41598-018-23207-7
Comparative High-Resolution Transcriptome Sequencing of Lymphoma Cell Lines and de novo Lymphomas Reveals Cell-Line-Specific Pathway Dysregulation
Cited by: 10
Author(s): Leila Taher, Julia Beck, Wen Li, Catrin Roolf, Jan T. Soller, Barbara C. Rütgen, Sabine E. Hammer, Murali Chodisetti, Sina Sender, Katharina A Sterenczak, Georg Fuellen, Christian Junghanß, Bertram Brenig, Ingo Nolte, Ekkehard Schütz, Hugo Murua Escobar
Software Mentions: 4
Published: over 6 years ago
10.1155/2020/6784138
Identification of FOS as a Candidate Risk Gene for Liver Cancer by Integrated Bioinformatic Analysis
Cited by: 10
Author(s): Jinwu Hu, Guangyu Ding, Pei-Yao Fu, Wei‐Guo Tang, Qiqing Sun, Xiao‐Dong Zhu, Ying‐Hao Shen, Ji Zhou, Jia Fan, Hui–Chuan Sun, Cheng Huang
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0206948
Comparative mRNA and miRNA transcriptome analysis of a mouse model of IGFIR-driven lung cancer
Cited by: 4
Author(s): Robert A. Jones, S. Elizabeth Franks, Roger A. Moorehead
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0176669
Development of the cutaneous microbiome in the preterm infant: A prospective longitudinal study
Cited by: 33
Author(s): Mohan Pammi, Jacqueline O’Brien, Nadim J. Ajami, Matthew C. Wong, James Versalovic, Joseph F. Petrosino
Software Mentions: 4
Published: over 7 years ago
10.1155/2020/7594098
Development and Validation of an Immune-Related Prognostic Signature for Ovarian Cancer Based on Weighted Gene Coexpression Network Analysis
Cited by: 6
Author(s): Yuanyuan An, Qing Yang
Software Mentions: 4
Published: almost 4 years ago
10.1186/s40246-020-00270-8
A potential prognostic prediction model of colon adenocarcinoma with recurrence based on prognostic lncRNA signatures
Cited by: 14
Author(s): Lipeng Jin, Chenyao Li, Tao Liu, Lei Wang
Software Mentions: 4
Published: over 4 years ago
10.1155/2020/8162524
High-Throughput Sequencing and Exploration of the lncRNA-circRNA-miRNA-mRNA Network in Type 2 Diabetes Mellitus
Cited by: 39
Author(s): Fang Yang, Chen Yang, Zhiqiang Xue, Yaogai Lv, Ли Шен, Kexin Li, Pingping Zheng, Pan Pan, Tianyu Feng, Lina Jin, Yan Yao
Software Mentions: 4
Published: over 4 years ago
10.3389/fcell.2021.709498
The Dynamic Changes of Transcription Factors During the Development Processes of Human Biparental and Uniparental Embryos
Cited by: 3
Author(s): Chenxi Zhang, Conghui Li, Ling Yang, Lizhi Leng, Dragomirka Jovic, Jun Wang, Fang Fang, Guibo Li, Depeng Zhao, Xuemei Li, Lin Lin, Yonglun Luo, Lars Bolund, Jinrong Huang, Ge Lin, Fengping Xu
Software Mentions: 4
Published: about 3 years ago
10.18632/aging.104119
Vascular endothelial growth factor receptor-2 and its association with tumor immune regulatory gene expression in hepatocellular carcinoma
Cited by: 5
Author(s): Ze-Long Liu, Lingling Zhu, Jinghua Liu, Zhaoxia Pu, Zhiping Ruan, Chen Jiang
Software Mentions: 4
Published: about 4 years ago
10.3389/fgene.2021.664334
Disruption of Circadian Transcriptome in Lung by Acute Sleep Deprivation
Cited by: 6
Author(s): Yuntao Lu, Bing Liu, Junjie Ma, Shuo Yang, Ju Huang
Software Mentions: 4
Published: over 3 years ago
10.1038/s41396-020-0635-1
Targeted assemblies of cas1 suggest CRISPR-Cas’s response to soil warming
Cited by: 6
Author(s): Ruonan Wu, Benli Chai, James R. Cole, Santosh Gunturu, Xue Guo, Renmao Tian, Ji‐Dong Gu, Jizhong Zhou, James M. Tiedje
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0252452
Comprehensive analysis of lncRNA biomarkers in kidney renal clear cell carcinoma by lncRNA-mediated ceRNA network
Cited by: 4
Author(s): Ke Gong, Ting Xie, Yiliao Luo, Hui Guo, Jinlan Chen, Zhiping Tan, Yifeng Yang, Li Xie
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-018-20347-8
Characterization of soil bacterial, archaeal and fungal communities inhabiting archaeological human-impacted layers at Monte Iato settlement (Sicily, Italy)
Cited by: 20
Author(s): J.A. Siles, Birgit Öhlinger, Tomáš Cajthaml, Erich Kistler, Rosa Margesin
Software Mentions: 4
Published: almost 7 years ago
10.3389/fgene.2021.664260
Large-Scale Multiplexing Permits Full-Length Transcriptome Annotation of 32 Bovine Tissues From a Single Nanopore Flow Cell
Cited by: 11
Author(s): Michelle M. Halstead, Alma Islas–Trejo, Daniel Estanislao Goszczynski, Juan F. Medrano, Huaijun Zhou, Pablo J. Ross
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-017-14978-6
Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities
Cited by: 72
Author(s): Hirotoshi Sato, Yuki Sogo, Hideyuki Doi, Hiroki Yamanaka
Software Mentions: 4
Published: about 7 years ago
10.1038/s41598-017-11327-5
Genome-wide identification and co-expression network analysis provide insights into the roles of auxin response factor gene family in chickpea
Cited by: 26
Author(s): Vikash Singh, Mohan Singh Rajkumar, Rohini Garg, Mukesh Jain
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pone.0201690
Strap associates with Csde1 and affects expression of select Csde1-bound transcripts
Cited by: 5
Author(s): Kat Moore, Nurcan Yağcı, Floris van Alphen, Alexander B. Meijer, Peter A.C. ’t Hoen, Marieke von Lindern
Software Mentions: 4
Published: over 6 years ago
10.1155/2021/4582082
Identification of a Two-m6A RNA Methylation Regulator Risk Signature as an Independent Prognostic Biomarker in Papillary Renal Cell Carcinoma by Bioinformatic Analysis
Cited by: 5
Author(s): Fusheng Yang, Guojiang Zhao, Liyuan Ge, Yimeng Song, Kai Hong, Hongxian Zhang, Cheng Liu, Hong Peng, Lulin Ma
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0229308
Weighted gene co-expression network analysis identified six hub genes associated with rupture of intracranial aneurysms
Cited by: 6
Author(s): Qunhui Wang, Qiong Luo, Zhuo Yang, Yuhao Zhao, Jiaqi Li, Jian Wang, Jianmin Piao, Xuan Chen
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41396-020-00841-6
Evolution of Pseudomonas aeruginosa toward higher fitness under standard laboratory conditions
Cited by: 8
Author(s): Igor Grekov, Janne G. Thöming, Adrian Kordes, Susanne Häußler
Software Mentions: 4
Published: almost 4 years ago
10.1155/2020/4980609
The Important Role of Perituberal Tissue in Epileptic Patients with Tuberous Sclerosis Complex by the Transcriptome Analysis
Cited by: 3
Author(s): Shuqiang Li, Huijie Shao, Liansheng Chang
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-017-07975-2
Signs of innate immune activation and premature immunosenescence in psoriasis patients
Cited by: 30
Author(s): Liisi Šahmatova, Elena Sügis, Marina Šunina, Helen Hermann, Ele Prans, Maire Pihlap, Kristi Abram, Ana Rebane, Hedi Peterson, Pärt Peterson, Külli Kingo, Kai Kisand
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pone.0255822
Evaluation of the severity of nonalcoholic fatty liver disease through analysis of serum exosomal miRNA expression
Cited by: 5
Author(s): Jeong‐An Gim, Soo Min Bang, Young‐Sun Lee, Sun Young Yim, Young Kul Jung, Hayeon Kim, Baek-hui Kim, Ji Hoon Kim, Yeon Seok Seo, Hyung Joon Yim, Jong Eun Yeon, Soon Ho Um, Kwan Soo Byun
Software Mentions: 4
Published: over 3 years ago
10.1155/2021/6656943
Glial Cell-Derived Neurotrophic Factor Functions as a Potential Candidate Gene in Obstructive Sleep Apnea Based on a Combination of Bioinformatics and Targeted Capture Sequencing Analyses
Cited by: 3
Author(s): Yuanyuan Cao, Qing Zhu, Xintian Cai, Ting Wu, Xiayire Aierken, Ayguzal Ahmat, Shasha Li, Nanfang Li
Software Mentions: 4
Published: almost 4 years ago
10.3389/fgene.2021.633059
Prediction of a Competing Endogenous RNA Co-expression Network by Comprehensive Methods in Systemic Sclerosis-Related Interstitial Lung Disease
Cited by: 2
Author(s): Yue-Mei Yan, Ji-Na Zheng, Liwei Wu, Qianwen Rao, Qiaorong Yang, Di Gao, Qiang Wang
Software Mentions: 4
Published: over 3 years ago
10.1186/s13046-019-1228-6
Extracellular lipid loading augments hypoxic paracrine signaling and promotes glioma angiogenesis and macrophage infiltration
Cited by: 18
Author(s): Svenja Offer, Julien A. Menard, Julio Enríquez Pérez, Kelin Gonçalves de Oliveira, Vineesh Indira Chandran, Martin Johansson, Anna Bång-Rudenstam, Peter Siesjö, Anna Ebbesson, Ingrid Hedenfalk, Pia C. Sundgren, Anna Darabi, Mattias Belting
Software Mentions: 4
Published: over 5 years ago
10.1186/s13046-021-02092-5
Activin-A impedes the establishment of CD4+ T cell exhaustion and enhances anti-tumor immunity in the lung
Cited by: 5
Author(s): Ioannis Morianos, Aikaterini Tsitsopoulou, Konstantinos Potaris, Dimitrios Valakos, Ourania Fari, Giannis Vatsellas, Clementine Bostantzoglou, Andreas Photiades, Mina Gaga, Georgina Xanthou, Maria Semitekolou
Software Mentions: 4
Published: about 3 years ago
10.1186/s13046-021-02122-2
Mutant NPM1-regulated lncRNA HOTAIRM1 promotes leukemia cell autophagy and proliferation by targeting EGR1 and ULK3
Cited by: 19
Author(s): Yipei Jing, Xueke Jiang, Lei Li, Meixi Peng, Jun Ren, Qiaoling Xiao, Tao Yao, Yonghong Tao, Junpeng Huang, Lu Wang, Yuting Tang, Zailin Yang, Yang Zhou, Ling Zhang
Software Mentions: 4
Published: about 3 years ago
10.1371/journal.pone.0219980
Identification of pathological RA endotypes using blood-based biomarkers reflecting tissue metabolism. A retrospective and explorative analysis of two phase III RA studies
Cited by: 10
Author(s): Joseph Blair, Cecilie L. Bager, Adam Platt, Morten A. Karsdal, Anne‐Christine Bay‐Jensen
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-017-01794-1
Hormonal pleiotropy helps maintain queen signal honesty in a highly eusocial wasp
Cited by: 27
Author(s): Ricardo Caliari Oliveira, Ayrton Vollet-Neto, Cíntia Akemi Oi, Jelle S. van Zweden, Fábio Santos do Nascimento, Colin S. Brent, Tom Wenseleers
Software Mentions: 4
Published: over 7 years ago
10.1007/s00204-021-03127-8
Fluorescent tagging of endogenous Heme oxygenase-1 in human induced pluripotent stem cells for high content imaging of oxidative stress in various differentiated lineages
Cited by: 11
Author(s): Kirsten E. Snijders, András Fehér, Zsuzsanna Táncos, István Bock, Annamária Téglási, Linda van den Berk, Marije Niemeijer, Peter Bouwman, Sylvia E. Le Dévédec, Martijn J. Moné, Rob Van Rossom, Manoj Kumar, Anja Wilmes, Paul Jennings, Cathérine Verfaillie, Julianna Kobolák, Bas ter Braak, András Dinnyés, Bob van de Water
Software Mentions: 4
Published: about 3 years ago