cran: pROC | Projects | Ecosyste.ms: Papers

10.7717/peerj.8717

Genomic analysis of variability in Delta-toxin levels between <i>Staphylococcus aureus</i> strains
Cited by: 10
Author(s): Michelle Su, James T. Lyles, Robert A. Petit, Jessica Peterson, Michelle Hargita, Huaqiao Tang, Claudia Solís-Lemus, Cassandra L. Quave, Timothy D. Read
Software Mentions: 5
Published: over 4 years ago

10.4269/ajtmh.19-0968

Use of Typhoid Vi-Polysaccharide Vaccine as a Vaccine Probe to Delineate Clinical Criteria for Typhoid Fever
Cited by: 0
Author(s): Tarikul Islam, Justin Im, Faisal Ahmmed, Deok Ryun Kim, Ashraful Islam Khan, Khalequ Zaman, Mohammad Ali, Florian Marks, Firdausi Qadri, Jerome H. Kim, John D. Clemens
Software Mentions: 5
Published: over 4 years ago

10.7150/jca.50443

Six Novel Biomarkers for Diagnosis and Prognosis of Esophageal squamous cell carcinoma: validated by scRNA-seq and qPCR
Cited by: 24
Author(s): Liuhai Zheng, Linzhi Li, Jun Xie, Hai Jin, Nianyong Zhu
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12890-021-01391-z

Development and validation of a nomogram to predict pulmonary function and the presence of chronic obstructive pulmonary disease in a Korean population
Cited by: 2
Author(s): Sang Chul Lee, Chansik An, Jongha Yoo, Sungho Park, Donggyo Shin, Chang Hoon Han
Software Mentions: 5
Published: almost 4 years ago

10.1164/rccm.202003-0510OC

Whole-Blood RNA Profiles Associated with Pulmonary Arterial Hypertension and Clinical Outcome
Cited by: 36
Author(s): Christopher J. Rhodes, Pablo Otero-Núñez, John Wharton, Emilia M. Swietlik, Sokratis Kariotis, Lars Harbaum, Mark J. Dunning, Jason M. Elinoff, Niamh Errington, A. A. Roger Thompson, James Iremonger, J. Gerry Coghlan, Paul A. Corris, Luke Howard, David G. Kiely, Colin Church, Joanna Pepke‐Zaba, Mark Toshner, Stephen J. Wort, Ankit A. Desai, Marc Humbert, William C. Nichols, Laura Southgate, David‐Alexandre Trégouët, Richard Trembath, Inga Prokopenko, Stefan Gräf, Nicholas W. Morrell, Dennis Wang, Allan Lawrie, Martin R. Wilkins
Software Mentions: 5
Published: over 4 years ago

10.1016/j.ejro.2021.100377

Single shot zonal oblique multislice SE-EPI diffusion-weighted imaging with low to ultra-high b-values for the differentiation of benign and malignant vertebral spinal fractures
Cited by: 3
Author(s): Elisabeth Sartoretti, Sabine Sartoretti–Schefer, Luuk van Smoorenburg, Barbara Eichenberger, Árpád Schwenk, David Czell, Alex Alfieri, Andreas Gutzeit, Manoj Mannil, Christoph A. Binkert, Michael Wyss, Thomas Sartoretti
Software Mentions: 5
Published: almost 4 years ago

10.7717/peerj.6548

Identification of an eight-gene signature for survival prediction for patients with hepatocellular carcinoma based on integrated bioinformatics analysis
Cited by: 41
Author(s): Guo-jie Qiao, Liang Chen, Junzhen Wu, Li Zhouri
Software Mentions: 5
Published: over 5 years ago

10.1111/jcmm.16799

Comprehensive characterization of pathological stage‐related genes of papillary thyroid cancer along with survival prediction
Cited by: 1
Author(s): Lei Xu, Liang Feng, Haiyan Li, Menglong Li, Yongmei Xie, Zhihui Li, Yanzhi Guo
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.9174

Identification of potential biomarkers and their clinical significance in gastric cancer using bioinformatics analysis methods
Cited by: 4
Author(s): Jie Liu, Miao Zhou, Yangyang Ouyang, Laifeng Du, Lingbo Xu, Hongyun Liu
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.3712

PrePhyloPro: phylogenetic profile-based prediction of whole proteome linkages
Cited by: 15
Author(s): Yulong Niu, Chengcheng Liu, Shayan Moghimyfiroozabad, Yi Yang, Kambiz N. Alavian
Software Mentions: 5
Published: about 7 years ago

10.1186/s13036-018-0112-9

Machine learning analysis of microbial flow cytometry data from nanoparticles, antibiotics and carbon sources perturbed anaerobic microbiomes
Cited by: 10
Author(s): Abhishek S. Dhoble, Pratik Lahiri, Kaustubh Bhalerao
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0237601

Impact of calculated plasma volume status on all-cause and cardiovascular mortality: 4-year nationwide community-based prospective cohort study
Cited by: 14
Author(s): Yoichiro Otaki, Tetsu Watanabe, Tsuneo Konta, Masafumi Watanabe, Koichi Asahi, Kunihiro Yamagata, Shouichi Fujimoto, Kazuhiko Tsuruya, Ichiei Narita, Masato Kasahara, Yugo Shibagaki, Kunitoshi Iseki, Toshiki Moriyama, Masahide Kondo, Tsuyoshi Watanabe
Software Mentions: 5
Published: over 4 years ago

10.3390/v12101158

Identifying Spanish Areas at More Risk of Monthly BTV Transmission with a Basic Reproduction Number Approach
Cited by: 1
Author(s): Cecilia Aguilar-Vega, Jaime Bosch, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 5
Published: about 4 years ago

10.1177/0300985820985138

Stereology in Grading and Prognosis of Canine Cutaneous Mast Cell Tumors
Cited by: 0
Author(s): Mafalda Casanova, Sandra Branco, Inês Berenguer Veiga, André Barros, Pedro Faísca
Software Mentions: 5
Published: almost 4 years ago

10.1002/ece3.7226

Analysing detection gaps in acoustic telemetry data to infer differential movement patterns in fish
Cited by: 10
Author(s): Michael Williamson, Emma Tebbs, Terence P. Dawson, David J. Curnick, Francesco Ferretti, Aaron B. Carlisle, Taylor K. Chapple, Robert J. Schallert, David Tickler, Xavier A. Harrison, Barbara A. Block, David Jacoby
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13326-018-0189-6

Using predicate and provenance information from a knowledge graph for drug efficacy screening
Cited by: 16
Author(s): Wytze J. Vlietstra, Rein Vos, Anneke M. Sijbers, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 5
Published: about 6 years ago

10.1186/2197-425X-2-10

Reliability of the nitrogen washin-washout technique to assess end-expiratory lung volume at variable PEEP and tidal volumes
Cited by: 10
Author(s): Jean-Christophe Richard, Céline Pouzot, Alfredo Pinzón, J. S. Torres González, Maciej Orkisz, B. Neyran, Marcela Hernández Hoyos, F. Lávenne, Claude Guérin
Software Mentions: 5
Published: over 10 years ago

10.1186/s12886-017-0544-x

Predictive models of long-term anatomic outcome in age-related macular degeneration treated with as-needed Ranibizumab
Cited by: 11
Author(s): Lucía González-Buendía, Santiago Delgado-Tirado, María R. Sanabria, Itziar Fernández, Rosa M. Coco
Software Mentions: 5
Published: over 7 years ago

10.15252/emmm.201404874

Non‐invasive prognostic protein biomarker signatures associated with colorectal cancer
Cited by: 42
Author(s): Silvia Šurinová, Lenka Radová, Meena Choi, Josef Srovnal, Hermann Brenner, Olga Vitek, Marián Hajdúch, Ruedi Aebersold
Software Mentions: 5
Published: over 9 years ago

10.1186/s12883-021-02276-8

Construction of a risk prediction model for Alzheimer’s disease in the elderly population
Cited by: 10
Author(s): Lingling Wang, Ping Li, Ming Hou, Xiumin Zhang, Xiaolin Cao, Hongyan Li
Software Mentions: 5
Published: over 3 years ago

10.1016/j.ebiom.2020.102899

Development and validation of the first consensus gene-expression signature of operational tolerance in kidney transplantation, incorporating adjustment for immunosuppressive drug therapy
Cited by: 15
Author(s): Sofia Christakoudi, Manohursingh Runglall, Paula Mobillo, Irene Rebollo‐Mesa, Tjir Li Tsui, Estefanía Nova-Lamperti, Catharine Taube, S. Norris, Yogesh Kamra, Rachel Hilton, Titus Augustine, Sunil Bhandari, Richard J. Baker, David Berglund, Sue Carr, David Game, Siân Griffin, Philip A. Kalra, Robert Lewis, Patrick B. Mark, Stephen D. Marks, Iain MacPhee, William McKane, Markus Mohaupt, Estela Paz‐Artal, Sui Phin Kon, Daniel Serón, Manish D. Sinha, Beatriz Tucker, Ondřej Viklický, Daniel Ståhl, Robert I. Lechler, Graham Lord, Maria P. Hernandez-Fuentes
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0209018

Mucopolysaccharidosis type II detection by Naïve Bayes Classifier: An example of patient classification for a rare disease using electronic medical records from the Canadian Primary Care Sentinel Surveillance Network
Cited by: 19
Author(s): Behrouz Ehsani-Moghaddam, John Queenan, Jennifer MacKenzie, Richard Birtwhistle
Software Mentions: 5
Published: almost 6 years ago

10.3390/molecules26051357

The Influence of Smoking Status on Exhaled Breath Profiles in Asthma and COPD Patients
Cited by: 6
Author(s): Stefania Principe, Job J.M.H. van Bragt, Cristina Longo, Rob de Vries, Peter J. Sterk, Nicola Scichilone, Susanne Vijverberg, Anke‐Hilse Maitland‐van der Zee
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0237412

The impact of different negative training data on regulatory sequence predictions
Cited by: 3
Author(s): Louisa-Marie Krützfeldt, Max Schubach, Martin Kircher
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12872-021-01961-3

Distinguishing cardiac myxomas from cardiac thrombi by a radiomics signature based on cardiovascular contrast-enhanced computed tomography images
Cited by: 3
Author(s): Wen-Lei Qian, Jiang Yu, Xi Liu, Yingkun Guo, Yuan Li, Xin Tang, Zhigang Yang
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pcbi.1008098

A machine learning and network framework to discover new indications for small molecules
Cited by: 8
Author(s): Coryandar Gilvary, Jamal Elkhader, Neel S. Madhukar, Claire Henchcliffe, Marcus D. Goncalves, Olivier Elemento
Software Mentions: 5
Published: over 4 years ago

10.1007/s11306-018-1419-8

Identification of a urine metabolite constellation characteristic for kidney allograft rejection
Cited by: 18
Author(s): Miriam C. Banas, Sindy Neumann, Johannes Eiglsperger, Eric Schiffer, Franz Josef Putz, Simone Reichelt-Wurm, Bernhard K. Krämer, Philipp Pagel, Bernhard Banas
Software Mentions: 5
Published: about 6 years ago

10.1534/g3.118.200563

Comparative Genomics Approaches Accurately Predict Deleterious Variants in Plants
Cited by: 32
Author(s): Thomas J. Y. Kono, Lei Li, Ching-Hua Shih, Paul Hoffman, Peter L. Morrell, Justin C. Fay
Software Mentions: 5
Published: about 6 years ago

10.18632/oncotarget.26032

Comprehensive analysis identifying aberrant DNA methylation in rectal mucosa from ulcerative colitis patients with neoplasia
Cited by: 6
Author(s): Yuji Toiyama, Yoshinaga Okugawa, Satoru Kondo, Yoshiki Okita, Toshimitsu Araki, Kurando Kusunoki, Motoi Uchino, Hiroki Ikeuchi, Seiichi Hirota, Akira Mitsui, Kenji Takehana, Tsutomu Umezawa, Masato Kusunoki
Software Mentions: 5
Published: about 6 years ago

10.3390/jpm10040271

Identification of Metabolic Biomarkers in Relation to Methotrexate Response in Early Rheumatoid Arthritis
Cited by: 13
Author(s): Helen R. Gosselt, Ittai B. Muller, Gerrit Jansen, Michel van Weeghel, Frédéric M. Vaz, Johanna M. W. Hazes, Sandra G. Heil, Robert de Jonge
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12859-016-1228-x

The parameter sensitivity of random forests
Cited by: 91
Author(s): Barbara Huang, Paul C. Boutros
Software Mentions: 5
Published: about 8 years ago

10.1186/s13054-021-03609-2

Accuracy of pancreatic stone protein for the diagnosis of infection in hospitalized adults: a systematic review and individual patient level meta-analysis
Cited by: 18
Author(s): J Prazák, Irina Irincheeva, Martin J. Llewelyn, Daiana Stolz, Luis García de Guadiana Romualdo, Rolf Graf, Theresia Reding, Holger Jan Klein, Philippe Eggimann, Yok-Ai Que
Software Mentions: 5
Published: over 3 years ago

10.1186/s12974-019-1418-3

Correlation of alteration of HLA-F expression and clinical characterization in 593 brain glioma samples
Cited by: 36
Author(s): Enshan Feng, Tingyu Liang, Xiaoyong Wang, Juan Du, Kai Tang, Xiaoxuan Wang, Fang Wang, Guoxiang You
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12874-016-0239-7

Assessment of predictive performance in incomplete data by combining internal validation and multiple imputation
Cited by: 41
Author(s): Simone Wahl, Anne‐Laure Boulesteix, Astrid Zierer, Barbara Thorand, Mark A. van de Wiel
Software Mentions: 5
Published: about 8 years ago

10.18632/oncotarget.22750

Development of a predictive miRNA signature for breast cancer risk among high-risk women
Cited by: 28
Author(s): Nicholas H. Farina, Jon E. Ramsey, Melissa Cuke, Thomas P. Ahern, David J. Shirley, Janet L. Stein, Gary S. Stein, Jane B. Lian, Marie Wood
Software Mentions: 5
Published: almost 7 years ago

10.1097/MD.0000000000026212

The diagnostic value of a non-contrast computed tomography scan-based radiomics model for acute aortic dissection
Cited by: 3
Author(s): Zewang Zhou, Jinquan Yang, Shuntao Wang, Weihao Li, Lei Xie, Yifan Li, Changzheng Zhang
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0224037

Foraging strategies are maintained despite workforce reduction: A multidisciplinary survey on the pollen collected by a social pollinator
Cited by: 26
Author(s): Paolo Biella, Nicola Tommasi, Asma Akter, Lorenzo Guzzetti, Jan Klečka, Anna Sandionigi, Massimo Labra, Andrea Galimberti
Software Mentions: 5
Published: about 5 years ago

10.3390/ijms22042046

Dysregulated Provision of Oxidisable Substrates to the Mitochondria in ME/CFS Lymphoblasts
Cited by: 20
Author(s): Daniel Missailidis, Oana Sanislav, Claire Y. Allan, Paige K. Smith, Sarah J. Annesley, Paul R. Fisher
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0117605

Gender-Dependent Differences in Plasma Matrix Metalloproteinase-8 Elevated in Pulmonary Tuberculosis
Cited by: 27
Author(s): Tarangini Sathyamoorthy, Gurjinder Sandhu, Liku B. Tezera, Richard Thomas, Akul Singhania, Christopher H. Woelk, Borislav D. Dimitrov, Dan Agranoff, Carlton A. Evans, Jon S. Friedland, Paul Elkington
Software Mentions: 5
Published: almost 10 years ago

10.3390/life11060588

Impact TMPRSS2–ERG Molecular Subtype on Prostate Cancer Recurrence
Cited by: 7
Author(s): Anastasiya A. Kobelyatskaya, Elena A. Pudova, Anastasiya V. Snezhkina, Maria Fedorova, Vladislav Pavlov, Zulfiya G. Guvatova, М. В. Савватеева, Nataliya V. Melnikova, Alexey A. Dmitriev, Trofimov D.Yu. Trofimov, Г. Т. Сухих, K. M. Nyushko, B. Ya. Alekseev, Sergey V. Razin, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 5
Published: over 3 years ago

10.3390/diagnostics10040188

Profiling of Circulating microRNAs in Prostate Cancer Reveals Diagnostic Biomarker Potential
Cited by: 21
Author(s): Jacob Fredsøe, Anne Rasmussen, Peter Mouritzen, Marianne Bjerre, Peter Busch Østergren, Mikkel Fode, Michael Borre, Karina D. Sørensen
Software Mentions: 5
Published: over 4 years ago

10.3390/ani11061602

TeamMate: A Longitudinal Study of New Zealand Working Farm Dogs. III. Factors Affecting the Risk of Dogs Being Lost from the Workforce
Cited by: 1
Author(s): Katja Elisabeth Isaksen, Lori Linney, Helen Williamson, Norman Espinosa, Nick J. Cave, Naomi Cogger
Software Mentions: 5
Published: over 3 years ago

10.3389/fphar.2021.616529

Systematic Investigation of DNA Methylation Associated With Platinum Chemotherapy Resistance Across 13 Cancer Types
Cited by: 4
Author(s): Ruizheng Sun, Chao Du, Jiaxin Li, Yanhong Zhou, Xiong Wang, Juanjuan Xiang, Jiheng Liu, Zhifeng Xiao, Fang Li, Li Zheng
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0257343

Analysis of potential genetic biomarkers and molecular mechanism of smoking-related postmenopausal osteoporosis using weighted gene co-expression network analysis and machine learning
Cited by: 7
Author(s): Shaoshuo Li, Baixing Chen, Hao Chen, Zhen Hua, Yang Shao, Heng Yin, Jianwei Wang
Software Mentions: 5
Published: about 3 years ago

10.1186/s12859-019-2645-4

reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction
Cited by: 5
Author(s): Risa Karakida Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms20225594

Lipid Related Genes Altered in NASH Connect Inflammation in Liver Pathogenesis Progression to HCC: A Canonical Pathway
Cited by: 19
Author(s): Christophe Desterke, Franck Chiappini
Software Mentions: 5
Published: about 5 years ago

10.1002/cam4.3481

Integrated genomic analysis identifies a genetic mutation model predicting response to immune checkpoint inhibitors in melanoma
Cited by: 22
Author(s): Junjie Jiang, Yongfeng Ding, Mengjie Wu, Yanyan Chen, Xiadong Lyu, Jun Lü, Haiyong Wang, Lisong Teng
Software Mentions: 5
Published: about 4 years ago

10.1186/s12916-021-01942-5

Accurate diagnosis of colorectal cancer based on histopathology images using artificial intelligence
Cited by: 52
Author(s): K. S. Wang, Gang Yu, C. Xu, Xiang-He Meng, Jing Zhou, Cheng Zheng, Zihao Deng, Li Shang, R. Liu, Shaojing Su, Xiao Yan Zhou, Q. Li, J. Li, J. Wang, Kebo Ma, Jing Qi, Zheyu Hu, Peng Tang, Jun Deng, Xiaohui Qiu, B. Y. Li, Wen‐Di Shen, Ru-Ping Quan, Jun Yang, Lingli Huang, Yin Xiao, Zhen Yang, Z. Li, S. C. Wang, Haoran Ren, Chia-Wei Liang, Wei Guo, Y. Li, Huang Xiao, Yuxiang Gu, Jing‐Ping Yun, Dan Huang, Zhigang Song, Xiangshan Fan, L. Chen, Xijing Yan, Zehui Huang, Jin Huang, Joseph Luttrell, Chaoyang Zhang, Wentong Zhou, Kexin Zhang, Chunhui Yi, Chong Wu, Hui Shen, Y.P. Wang, Huang Xiao, Hong‐Wen Deng
Software Mentions: 5
Published: over 3 years ago

10.1038/s42003-019-0464-9

High throughput proteomics identifies a high-accuracy 11 plasma protein biomarker signature for ovarian cancer
Cited by: 73
Author(s): Stefan Enroth, Malin Berggrund, Maria Lycke, John Broberg, Martin Lundberg, Erika Assarsson, Matts Olovsson, Karin Stålberg, Karin Sundfeldt, Ulf Gyllensten
Software Mentions: 5
Published: over 5 years ago

10.1186/s40560-021-00538-8

Predictors of failure with high-flow nasal oxygen therapy in COVID-19 patients with acute respiratory failure: a multicenter observational study
Cited by: 34
Author(s): Ricard Mellado Artigas, Luis Eduardo Mujica, Magda Ruiz, Bruno L. Ferreyro, Federico Angriman, Egoitz Arruti, Antoni Torres, Enric Barbeta, Jesús Villar, Carlos Ferrando
Software Mentions: 5
Published: over 3 years ago

10.3390/ijms21072403

Novel Autoantibody Signatures in Sera of Patients with Pancreatic Cancer, Chronic Pancreatitis and Autoimmune Pancreatitis: A Protein Microarray Profiling Approach
Cited by: 8
Author(s): Sahar Ghassem-Zadeh, Katrin Hufnagel, Andrea S. Bauer, Jean Louis Frossard, Masaru Yoshida, Hiromu Kutsumi, Hans Acha‐Orbea, Matthias Neulinger-Muñoz, Johannes A Vey, Christoph Eckert, Oliver Strobel, Jörg D. Hoheisel, Klaus Felix
Software Mentions: 5
Published: over 4 years ago

10.1186/s40644-020-00297-z

A CT-based radiomics nomogram for differentiation of focal nodular hyperplasia from hepatocellular carcinoma in the non-cirrhotic liver
Cited by: 41
Author(s): Pei Nie, Guangli Yang, Jian Guo, Jingjing Chen, Xiaoli Li, Qianqian Ji, Jie Wu, Jingjing Cui, Wenjian Xu
Software Mentions: 5
Published: over 4 years ago

10.1186/s40644-021-00406-6

“Real-world” radiomics from multi-vendor MRI: an original retrospective study on the prediction of nodal status and disease survival in breast cancer, as an exemplar to promote discussion of the wider issues
Cited by: 10
Author(s): Simon J. Doran, Santosh Kumar, Matthew Orton, James A. d’Arcy, Fenna Kwaks, Elizabeth O’Flynn, Zaki Ahmed, Kate Downey, Mitch Dowsett, Nicholas C. Turner, Christina Messiou, Dow‐Mu Koh
Software Mentions: 5
Published: over 3 years ago

10.1186/s13148-021-01018-4

Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects
Cited by: 44
Author(s): Colette Christiansen, Juan Castillo-Fernandez, Arce Domingo‐Relloso, Wei Zhao, Julia S. El-Sayed Moustafa, Pei-Chien Tsai, Jane Maddock, Karin Haack, Shelley A. Cole, Sharon L.R. Kardia, Mariam Molokhia, Matthew Suderman, Chris Power, Caroline L Relton, Andrew Wong, Diana Kuh, Alissa Goodman, Kerrin S. Small, Jennifer A. Smith, María Téllez-Plaza, Ana Navas-Acién, George B. Ploubidis, Rebecca Hardy, Jordana T. Bell
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12935-021-02046-z

Upregulation of ARNTL2 is associated with poor survival and immune infiltration in clear cell renal cell carcinoma
Cited by: 11
Author(s): Song Wang, Xueyou Ma, Yufan Ying, Jiazhu Sun, Zitong Yang, Jiangfeng Li, Ke Jin, Xiao Wang, Bo Xie, Xiangyi Zheng, Ben Liu, Liping Xie
Software Mentions: 5
Published: over 3 years ago

10.1186/s12935-019-1085-6

CTLA-4 correlates with immune and clinical characteristics of glioma
Cited by: 63
Author(s): Fangkun Liu, Jing Huang, Xuming Liu, Quan Cheng, Chengke Luo, Zhixiong Liu
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2020.599888

Non-Invasive Radiomics Approach Predict Invasiveness of Adamantinomatous Craniopharyngioma Before Surgery
Cited by: 11
Author(s): Guofo Ma, Jie Kang, Ning Qiao, Bochao Zhang, Xuzhu Chen, Guilin Li, Zhixian Gao, Songbai Gui
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12935-019-1002-z

Two predictive precision medicine tools for hepatocellular carcinoma
Cited by: 11
Author(s): Zhiqiao Zhang, Jing Li, Tingshan He, Yanling Ouyang, Yiyan Huang, Qingbo Liu, Peng Wang, Jianqiang Ding
Software Mentions: 5
Published: about 5 years ago

10.1186/s40425-018-0328-8

Distinct predictive biomarker candidates for response to anti-CTLA-4 and anti-PD-1 immunotherapy in melanoma patients
Cited by: 140
Author(s): Priyanka B. Subrahmanyam, Zhiwan Dong, Daniel Gusenleitner, Anita Giobbie‐Hurder, Mariano Severgnini, Jun Zhou, Michael P. Manos, Lauren M. Eastman, Holden T. Maecker, F. Stephen Hodi
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2020.574228

Radiomic Feature-Based Predictive Model for Microvascular Invasion in Patients With Hepatocellular Carcinoma
Cited by: 18
Author(s): Mu He, Zhang Peng, Xiao Ma, Baochun He, Chihua Fang, Fucang Jia
Software Mentions: 5
Published: about 4 years ago

10.3389/fonc.2019.01200

C-Reactive Protein-to-Albumin Ratio as Prognostic Marker for Anal Squamous Cell Carcinoma Treated With Chemoradiotherapy
Cited by: 18
Author(s): Daniel Martin, Franz Rödel, Panagiotis Balermpas, Ria Winkelmann, Emmanouil Fokas, Claus Rödel
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2021.729219

A 4-Gene Signature Associated With Recurrence in Low- and Intermediate-Risk Endometrial Cancer
Cited by: 5
Author(s): Diocésio Alves Pinto de Andrade, Luciane Sussuchi da Silva, Ana Carolina Laus, Marcos Alves de Lima, Gustavo Nóriz Berardinelli, Vinícius Duval da Silva, Graziela de Macêdo Matsushita, Murilo Bonatelli, Aline Larissa Virginio da Silva, Adriane Feijó Evangelista, Jesus Paula Carvalho, Rui Manuel Reis, Ricardo dos Reis
Software Mentions: 5
Published: over 3 years ago

10.3390/metabo11090638

Metabolite Ratios as Quality Indicators for Pre-Analytical Variation in Serum and EDTA Plasma
Cited by: 6
Author(s): Sven Heiling, Nadine Knutti, Franziska Scherr, Jörg Geiger, Juliane Weikert, Michael Rose, Roland Jahns, Uta Ceglarek, André Scherag, Michael Kiehntopf
Software Mentions: 5
Published: about 3 years ago

10.1186/s12935-020-01294-9

A robust twelve-gene signature for prognosis prediction of hepatocellular carcinoma
Cited by: 46
Author(s): Guoqing Ouyang, Bin Yi, Guangdong Pan, Xiang Chen
Software Mentions: 5
Published: over 4 years ago

10.1186/s12964-019-0492-6

Comprehensive profiling identifies a novel signature with robust predictive value and reveals the potential drug resistance mechanism in glioma
Cited by: 18
Author(s): Fan Zeng, Kuanyu Wang, Xiu Liu, Zheng Zhao
Software Mentions: 5
Published: almost 5 years ago

10.3390/cancers13112592

Identification of Candidate Protein Biomarkers for CIN2+ Lesions from Self-Sampled, Dried Cervico–Vaginal Fluid Using LC-MS/MS
Cited by: 6
Author(s): Ariadna Lara Gutiérrez, Julia Hedlund Lindberg, Ganna Shevchenko, Inger Gustavsson, Jonas Bergquist, Ulf Gyllensten, Stefan Enroth
Software Mentions: 5
Published: over 3 years ago

10.1186/s13058-020-01291-w

A machine learning model that classifies breast cancer pathologic complete response on MRI post-neoadjuvant chemotherapy
Cited by: 56
Author(s): Elizabeth Sutton, Natsuko Onishi, Duc Fehr, Brittany Z. Dashevsky, Meredith Sadinski, Katja Pinker, Danny F. Martinez, Edi Brogi, Lior Z. Braunstein, Pedram Razavi, Mahmoud El‐Tamer, Virgilio Sacchini, Joseph O. Deasy, Elizabeth A. Morris, Harini Veeraraghavan
Software Mentions: 5
Published: over 4 years ago

10.3390/cancers13071512

Classification of Molecular Subtypes of High-Grade Serous Ovarian Cancer by MALDI-Imaging
Cited by: 11
Author(s): Wanja Kassuhn, Oliver Klein, Silvia Darb‐Esfahani, Hedwig Lammert, Sylwia Handzik, Eliane Tabea Taube, Wolfgang Schmitt, Carlotta Keunecke, David Horst, Felix Dreher, Joshy George, David D. Bowtell, Oliver Dorigo, Michael Hummel, Jalid Sehouli, Nils Blüthgen, Hagen Kulbe, Elena Ioana Braicu
Software Mentions: 5
Published: over 3 years ago

10.7150/ijms.48432

A Quantitative and Radiomics approach to monitoring ARDS in COVID-19 patients based on chest CT: a retrospective cohort study
Cited by: 18
Author(s): Yuntian Chen, Yi Wang, Yuwei Zhang, Na Zhang, Shuang Zhao, Han Zeng, Weiming Deng, Zixing Huang, Sanyuan Liu, Bin Song
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12879-021-06331-0

A novel CT-based radiomics in the distinction of severity of coronavirus disease 2019 (COVID-19) pneumonia
Cited by: 9
Author(s): Zongyu Xie, Haitao Sun, Jian Wang, He Xu, Shuhua Li, Cancan Zhao, Yuqing Gao, Xiaolei Wang, Tongtong Zhao, Shaofeng Duan, Chunhong Hu, Weiqun Ao
Software Mentions: 5
Published: over 3 years ago

10.1093/braincomms/fcab084

Integrative biochemical, proteomics and metabolomics cerebrospinal fluid biomarkers predict clinical conversion to multiple sclerosis
Cited by: 13
Author(s): Fay Probert, Tianrong Yeo, Yifan Zhou, Megan Sealey, Siddharth Arora, Jacqueline Palace, Timothy D. W. Claridge, Rainer Hillenbrand, Johanna Oechtering, David Leppert, Jens Kühle, D C Anthony
Software Mentions: 5
Published: over 3 years ago

10.1186/s12879-018-3127-4

“Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”
Cited by: 18
Author(s): Sheetal Verma, Peicheng Du, Damalie Nakanjako, Sabine Hermans, Jessica Briggs, Lydia Nakiyingi, Jerrold J. Ellner, Yukari C. Manabe, Padmini Salgame
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.626187

Dysregulation of Transcription Factor Networks Unveils Different Pathways in Human Papillomavirus 16-Positive Squamous Cell Carcinoma and Adenocarcinoma of the Uterine Cervix
Cited by: 9
Author(s): Saloê Bispo, Ticiana Della Justina Farias, Patrícia Savio de Araujo-Souza, Ricardo Cintra, Hellen Geremias dos Santos, Natasha Andressa Nogueira Jorge, Mauro A. A. Castro, Gabriel Wajnberg, Nicole de Miranda Scherer, Maria Luiza Nogueira Dias Genta, Jesus Paula Carvalho, Luísa Lina Villa, Laura Sichero, Fábio Passetti
Software Mentions: 5
Published: over 3 years ago

10.22074/IJFS.2020.134614

Anti-Müllerian Hormone Predictive Levels to Determine The Likelihood of Ovarian Hyper-Response in Infertile Women with Polycystic Ovarian Morphology.
Cited by: 2
Author(s): Azadeh Akbari Sene, Mahnaz Ashrafi, Nasim Alaghmand-Fard, Neda Mohammadi, Mona Mortezapour Alisaraie, Ahad Alizadeh
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0232242

Prediction of attempted suicide in men and women with crack-cocaine use disorder in Brazil
Cited by: 10
Author(s): Vinícius Serafini Roglio, Eduardo Nunes Borges, Francisco Diego Rabelo‐da‐Ponte, Felipe Ornell, Juliana Nichterwitz Scherer, Jaqueline Bohrer Schuch, Ives Cavalcante Passos, Breno Sanvicente‐Vieira, Rodrigo Grassi‐Oliveira, Lísia von Diemen, Flávio Pechansky, Félix Henrique Paim Kessler
Software Mentions: 5
Published: over 4 years ago

10.1111/cpr.13117

Prognostic and predictive role of a metabolic rate‐limiting enzyme signature in hepatocellular carcinoma
Cited by: 9
Author(s): Zhangding Wang, Yao Fu, Anliang Xia, Chen Chen, Jiamu Qu, Guifang Xu, Xiaoping Zou, Qiang Wang, Shouyu Wang
Software Mentions: 5
Published: about 3 years ago

10.3389/fonc.2021.590836

Positron Emission Tomography-Based Short-Term Efficacy Evaluation and Prediction in Patients With Non-Small Cell Lung Cancer Treated With Hypo-Fractionated Radiotherapy
Cited by: 3
Author(s): Yiqing Jiang, Qin Gao, Chen Han, Xiangxiang Shi, Jingbo Wu, Yue Chen, Yan Zhang, Haowen Pang, Sheng Lin
Software Mentions: 5
Published: over 3 years ago

10.1186/s13756-019-0567-6

Abstracts from the 5th International Conference on Prevention & Infection Control (ICPIC 2019)
Cited by: 10
Author(s):
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0242879

Validation of models using basic parameters to differentiate intestinal tuberculosis from Crohn’s disease: A multicenter study from Asia
Cited by: 9
Author(s): Julajak Limsrivilai, Choon Kin Lee, Piyapan Prueksapanich, Kamin Harinwan, Asawin Sudcharoen, Natcha Cheewasereechon, Satimai Aniwan, Pimsiri Sripongpan, Panu Wetwittayakhlang, Ananya Pongpaibul, Anapat Sanpavat, Nonthalee Pausawasdi, Phunchai Charatcharoenwitthaya, Peter Higgins, Siew C. Ng
Software Mentions: 5
Published: almost 4 years ago

10.3389/fonc.2019.00898

Genome-Wide Identification of a Novel Eight-lncRNA Signature to Improve Prognostic Prediction in Head and Neck Squamous Cell Carcinoma
Cited by: 26
Author(s): Bowen Yang, Jiming Shen, Xu Lu, Ying Chen, Xiaofang Che, Xiujuan Qu, Yunpeng Liu, Yuee Teng, Zhi Li
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0223549

Quantifying normal and parkinsonian gait features from home movies: Practical application of a deep learning–based 2D pose estimator
Cited by: 46
Author(s): Kenichiro Sato, Yu Nagashima, Tatsuo Mano, Atsushi Iwata, Tatsushi Toda
Software Mentions: 5
Published: about 5 years ago

10.1042/BSR20190729

The prognostic value of lncRNA SNHG4 and its potential mechanism in liver cancer
Cited by: 18
Author(s): Yan Jiao, Yanqing Li, Bin Jia, Qingmin Chen, Guoqiang Pan, Hua Fang, Yahui Liu
Software Mentions: 5
Published: almost 5 years ago

10.1128/mBio.00765-21

Markers of Polyfunctional SARS-CoV-2 Antibodies in Convalescent Plasma
Cited by: 51
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2021.650026

Fecal Microbiota and Gut Microbe-Derived Extracellular Vesicles in Colorectal Cancer
Cited by: 33
Author(s): Jihye Park, Nam-Eun Kim, Hyuk Yoon, Cheol Min Shin, Nayoung Kim, Dong Hoon Lee, Jae Yong Park, Chang Hwan Choi, Jae Gyu Kim, Eui Chong Kim, Tae-Seop Shin, Jinho Yang, Young Soo Park
Software Mentions: 5
Published: about 3 years ago

10.18632/aging.104136

Single cell sequencing reveals cell populations that predict primary resistance to imatinib in chronic myeloid leukemia
Cited by: 5
Author(s): Weilong Zhang, Baofeng Yang, Linqian Weng, Jiangtao Li, Jinfeng Bai, Ting Wang, Jingwen Wang, Yue Jin, Hongmei Jing, Yuchen Jiao, Xixi Chen, Hui Liu, Yi‐Xin Zeng
Software Mentions: 5
Published: almost 4 years ago

10.3389/fonc.2021.685980

Role of NRP1 in Bladder Cancer Pathogenesis and Progression
Cited by: 15
Author(s): Yun Dong, Weiming Ma, Zengliang Shi, Zhiguo Zhang, Jing Zhou, Yang Li, Shaoqi Zhang, Kun Pang, Bibo Li, Wen-da Zhang, Tao Fan, Guanghao Zhu, Xue Li, Rui Li, Ying Liu, Lin Hao, Conghui Han
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0257251

Potential biomarkers of major depression diagnosis and chronicity
Cited by: 10
Author(s): Ana Cecília de Menezes Galvão, Raíssa Nóbrega de Almeida, Geovan Menezes de Sousa Júnior, Mário André Leocádio-Miguel, Fernanda Palhano-Fontes, Dráulio Barros de Araújo, Bruno Lobão-Soares, João Paulo Maia‐de‐Oliveira, Emerson Arcoverde Nunes, Jaime Eduardo Cecílio Hallak, Jerome Sarris, Nicole Leite Galvão-Coelho
Software Mentions: 5
Published: about 3 years ago

10.1128/mBio.00180-20

Systemic Inflammatory Mediators Are Effective Biomarkers for Predicting Adverse Outcomes in Clostridioides difficile Infection
Cited by: 16
Author(s): Michael G. Dieterle, Rosemary Putler, D. Alexander Perry, Anitha Menon, Lisa Abernathy-Close, Naomi Perlman, Aline Penkevich, Alex Standke, Micah Keidan, Kimberly C. Vendrov, Ingrid L. Bergin, Vincent B. Young, Krishna Rao
Software Mentions: 5
Published: over 4 years ago

10.1128/mSystems.00579-19

Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies
Cited by: 48
Author(s): Cecilia Noecker, Hsuan-Chao Chiu, Christopher A. McNally, Elhanan Borenstein
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-019-6135-x

A gastric cancer LncRNAs model for MSI and survival prediction based on support vector machine
Cited by: 22
Author(s): Tao Chen, Cangui Zhang, Yingqiao Liu, Yuyun Zhao, Dingyi Lin, Yanfeng Hu, Jiang Yu, Guoxin Li
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2018.00674

Identification of Serum MicroRNAs as Novel Biomarkers in Esophageal Squamous Cell Carcinoma Using Feature Selection Algorithms
Cited by: 28
Author(s): Deqiang Zheng, Yuanjie Ding, Qing Ma, Lei Zhao, Xudong Guo, Yi Shen, Yan He, Wenqiang Wei, Fen Liu
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pntd.0009763

Assessment of the diagnostic accuracy and relevance of a novel ELISA system developed for seroepidemiologic surveys of Helicobacter pylori infection in African settings
Cited by: 1
Author(s): Evariste Tshibangu‐Kabamba, Bui Hoang Phuc, Vo Phuoc Tuan, Kartika Afrida Fauzia, Augustin Kabongo-Tshibaka, Nadine Kalenda Kayiba, Ángel Rosas Aguirre, Brecht Devleesschauwer, Alain Cimuanga-Mukanya, Patrick de Jésus Ngoma Kisoko, Takashi Matsumoto, Junko Akada, Ghislain Tumba Disashi, Dieudonné Mumba Ngoyi, Yasutoshi Kido, Niko Speybroeck, Yoshio Yamaoka
Software Mentions: 5
Published: about 3 years ago

10.3389/fonc.2020.541849

Radiomics Nomogram of DCE-MRI for the Prediction of Axillary Lymph Node Metastasis in Breast Cancer
Cited by: 18
Author(s): Ning Mao, Yi Dai, Fan Lin, Heng Ma, Shaofeng Duan, Haizhu Xie, Wenlei Zhao, Nan Hong
Software Mentions: 5
Published: about 4 years ago

10.1007/s00701-018-3681-y

Impaired cerebral compensatory reserve is associated with admission imaging characteristics of diffuse insult in traumatic brain injury
Cited by: 20
Author(s): Frederick A. Zeiler, Dong-Joo Kim, Manuel Cabeleira, Leanne Calviello, Peter Smielewski, Marek Czosnyka
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2021.670138

Integrated Analysis of ceRNA Network Reveals Prognostic and Metastasis Associated Biomarkers in Breast Cancer
Cited by: 8
Author(s): Qian Da, Qinghui Zheng, Danping Wu, Buyun Ye, Yang‐Yang Qian, Tao Zhou, Jie Qiu, Xuli Meng
Software Mentions: 5
Published: over 3 years ago

10.1038/s41392-020-00221-8

An individualized immune signature of pretreatment biopsies predicts pathological complete response to neoadjuvant chemoradiotherapy and outcomes in patients with esophageal squamous cell carcinoma
Cited by: 17
Author(s): Chaoqi Zhang, Guochao Zhang, Nan Sun, Zhen Zhang, Liyan Xue, Zhihui Zhang, Haijun Yang, Yuejun Luo, Xiaoli Zheng, Yonglei Zhang, Yufen Yuan, Ruixue Lei, Zhaoyang Yang, Bo Zheng, Le Wang, Yun Cao, Feng Wang, Sihui Wang, Shugeng Gao, Qi Xue, Yi Zhang, Jie He
Software Mentions: 5
Published: about 4 years ago

10.1155/2020/3598417

Effect of BRCA1 on the Concurrent Chemoradiotherapy Resistance of Cervical Squamous Cell Carcinoma Based on Transcriptome Sequencing Analysis
Cited by: 13
Author(s): Xin Wen, Lingling Shui, Manhua Cui
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2018.00360

Novel Nomogram for Preoperative Prediction of Early Recurrence in Intrahepatic Cholangiocarcinoma
Cited by: 79
Author(s): Wenjie Liang, Lei Xu, Pengfei Yang, Lele Zhang, Dalong Wan, Qiang Huang, Tianye Niu, Feng Chen
Software Mentions: 5
Published: about 6 years ago

10.1155/2021/6633442

The Construction and Comprehensive Analysis of Inflammation-Related ceRNA Networks and Tissue-Infiltrating Immune Cells in Ulcerative Colitis Progression
Cited by: 8
Author(s): Jiawei Lu, Aimaier Rouzigu, Li-Hong Teng, Weili Liu
Software Mentions: 5
Published: over 3 years ago

10.1038/cr.2017.121

5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic biomarkers for human cancers
Cited by: 229
Author(s): Wenshuai Li, Xu Zhang, Xingyu Lu, Lei You, Yanqun Song, Zhongguang Luo, Jun Zhang, Ji Nie, Wanwei Zheng, Diannan Xu, Yaping Wang, Yuanqiang Dong, Shulin Yu, Jun Hong, Jianping Shi, Hankun Hao, Fen Luo, Lingyang Hua, Peng Wang, Xiaoping Qian, Fang Yuan, Lian-Huan Wei, Ming Cui, Taiping Zhang, Quan Liao, Menghua Dai, Ziwen Liu, Ge Chen, Katherine Meckel, Sarbani Adhikari, Guifang Jia, Marc Bissonnette, Xin‐Xiang Zhang, Yupei Zhao, Wei Zhang, Chuan He, Jie Liu
Software Mentions: 5
Published: about 7 years ago

Projects: cran: pROC

Papers Mentioning pROC 1,740