cran: pROC | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0197074

Multi-site evaluation of the LN34 pan-lyssavirus real-time RT-PCR assay for post-mortem rabies diagnostics
Cited by: 43
Author(s): Crystal M. Gigante, Lisa Dettinger, James Powell, Melanie Seiders, Rene Edgar Condori, Richard Griesser, Kenneth Okogi, Maria P. Carlos, Kendra N. Pesko, Mike Breckenridge, Edson Michael M. Simon, Maria Yna Joyce Chu, April Davis, Scott Brunt, Lillian A. Orciari, Pamela A. Yager, William C. Carson, Claire Hartloge, Jeremiah T. Saliki, Susan Sánchez, Mojgan Deldari, Kristina Hsieh, Ashutosh Wadhwa, Kimberly Wilkins, Veronica Yung Peredo, Patricia Rabideau, Nina Gruhn, Rolain Cadet, Shrikrishna Isloor, Sujith S Nath, Tomy Joseph, Jinxin Gao, Ryan M. Wallace, Mary G. Reynolds, Victoria A. Olson, Li Yu
Software Mentions: 6
Published: over 8 years ago

10.1038/s42003-020-0863-y

A miRNA-based diagnostic model predicts resectable lung cancer in humans with high accuracy
Cited by: 62
Author(s): Keisuke Asakura, Tsukasa Kadota, Juntaro Matsuzaki, Yukihiro Yoshida, Yusuke Yamamoto, Kazuo Nakagawa, Satoko Takizawa, Yasumichi Aoki, Eiji Nakamura, Junichiro Miura, Hiromi Sanada, Ken Kato, Shun Watanabe, Takahiro Ochiya
Software Mentions: 6
Published: over 6 years ago

10.1186/s13613-017-0263-8

Diagnostic accuracy of quantitative neuromuscular ultrasound for the diagnosis of intensive care unit-acquired weakness: a cross-sectional observational study
Cited by: 49
Author(s): Esther Witteveen, Juultje Sommers, Luuk Wieske, Jonne Doorduin, Nens van Alfen, Marcus J. Schultz, Ivo N. van Schaik, Janneke Horn, Camiel Verhamme
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0210467

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets
Cited by: 0
Author(s): Katerina Taškova, Jean-Fred Fontaine, Ralf Mrowka, Miguel A. Andrade‐Navarro
Software Mentions: 6
Published: over 7 years ago

10.3390/diagnostics11010005

The Role of Urine F2-isoprostane Concentration in Delayed Cerebral Ischemia after Aneurysmal Subarachnoid Haemorrhage—A Poor Prognostic Factor
Cited by: 4
Author(s): Karol Wiśniewski, Marta Popęda, Bartłomiej Tomasik, Michał Bieńkowski, Ernest J. Bobeff, Ludomir Stefańczyk, Krzysztof Tybor, Marlena Hupało, Dariusz J. Jaskólski
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12911-017-0518-1

Word2Vec inversion and traditional text classifiers for phenotyping lupus
Cited by: 49
Author(s): Clayton A. Turner, Alexander Jacobs, Cassios K. Marques, Jim C. Oates, Diane L. Kamen, Paul E. Anderson, Jihad S. Obeid
Software Mentions: 6
Published: about 9 years ago

10.1002/1878-0261.12062

Methylation profiling of paediatric pilocytic astrocytoma reveals variants specifically associated with tumour location and predictive of recurrence
Cited by: 14
Author(s): Alexandra Sexton-Oates, Andrew Dodgshun, Volker Hovestadt, David Jones, David M. Ashley, Michael J. Sullivan, Duncan MacGregor, Richard Saffery
Software Mentions: 6
Published: about 8 years ago

10.1002/hbm.24554

Detection of mild cognitive impairment in a community‐dwelling population using quantitative, multiparametric MRI‐based classification
Cited by: 6
Author(s): Mark J. R. J. Bouts, Jeroen van der Grond, Meike W. Vernooij, Marisa Koini, Tijn M. Schouten, Frank de Vos, Rogier A. Feis, Lotte G.M. Cremers, Anita Lechner, Reinhold Schmidt, Mark de Rooij, Wiro J. Niessen, M. Arfan Ikram, Serge A.R.B. Rombouts
Software Mentions: 6
Published: over 7 years ago

10.1016/j.redox.2020.101764

Prediction of survival odds in COVID-19 by zinc, age and selenoprotein P as composite biomarker
Cited by: 130
Author(s): Raban Arved Heller, Qian Sun, Julian Hackler, Julian Seelig, Linda Seibert, Asan Cherkezov, Waldemar B. Minich, Petra Seemann, Joachim Diegmann, Maximilian Pilz, Manuel Bachmann, Alireza Ranjbar, Arash Moghaddam, Lutz Schomburg
Software Mentions: 6
Published: over 5 years ago

10.3390/genes12060898

A Literature-Derived Knowledge Graph Augments the Interpretation of Single Cell RNA-seq Datasets
Cited by: 4
Author(s): Deeksha Doddahonnaiah, Patrick Lenehan, Travis Hughes, David Zemmour, Enrique Garcia-Rivera, A J Venkatakrishnan, Ramakrishna Chilaka, Apoorv Khare, Akhil Kasaraneni, Abhinav Garg, Akash Anand, Rakesh Barve, Viswanathan Thiagarajan, Venky Soundararajan
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.721644

CDT1 Is a Novel Prognostic and Predictive Biomarkers for Hepatocellular Carcinoma
Cited by: 14
Author(s): Chenhui Cai, Ying Zhang, Xu Hu, Wenhui Hu, Sizhen Yang, Hao Qiu, Tongwei Chu
Software Mentions: 6
Published: about 5 years ago

10.3389/fneur.2019.00844

Bifurcation Configuration Is an Independent Risk Factor for Aneurysm Rupture Irrespective of Location
Cited by: 17
Author(s): Qinglin Liu, Peng Jiang, Yuhua Jiang, Shaolin Li, Huijian Ge, Hengwei Jin, Youxiang Li
Software Mentions: 6
Published: about 7 years ago

10.1186/s13073-021-00844-8

The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries
Cited by: 21
Author(s): Caroline Young, Henry M. Wood, Ramakrishnan Ayloor Seshadri, Pham Van Nang, Carlos Vaccaro, Luis Contreras Melendez, Mayilvahanan Bose, Mai Van Doi, Tamara Alejandra Piñero, Camilo Tapia Valladares, Julieta Argüero, Alba Fuentes Balaguer, Kelsey N. Thompson, Yan Yan, Curtis Huttenhower, Philip Quirke
Software Mentions: 6
Published: over 5 years ago

10.1186/s13073-020-00729-2

Burden of tumor mutations, neoepitopes, and other variants are weak predictors of cancer immunotherapy response and overall survival
Cited by: 59
Author(s): M. C. Wood, Benjamin R. Weeder, Julianne K. David, Abhinav Nellore, Reid F. Thompson
Software Mentions: 6
Published: over 6 years ago

10.1128/mSphere.01261-20

Predominance of Atopobium vaginae at Midtrimester: a Potential Indicator of Preterm Birth Risk in a Nigerian Cohort
Cited by: 13
Author(s): Nkechi Martina Odogwu, Jun Chen, Chinedum Amara Onebunne, Patricio Jeraldo, Lu Yang, Stephen Johnson, Funmilola A. Ayeni, Marina Walther-Antonio, Oladapo Olayemi, Nicholas Chia, Akinyinka Omigbodun
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-70703-w

Peripheral serum metabolomic profiles inform central cognitive impairment
Cited by: 21
Author(s): Jingye Wang, Runmin Wei, Guoxiang Xie, Matthias Arnold, Alexandra Kueider‐Paisley, Gregory Louie, Siamak Mahmoudian Dehkordi, Colette Blach, Rebecca Baillie, Xianlin Han, Philip L. De Jager, David A. Bennett, Rima Kaddurah‐Daouk, Jia Wang
Software Mentions: 6
Published: about 6 years ago

10.3389/fchem.2021.659656

iMAP: A Web Server for Metabolomics Data Integrative Analysis
Cited by: 4
Author(s): Di Zhou, Wen-Hong Zhu, Tao Sun, Yang Wang, Yi Chi, Tianlu Chen, Jingchao Lin
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2017.02222

Gut Microbial Dysbiosis Is Associated with Altered Hepatic Functions and Serum Metabolites in Chronic Hepatitis B Patients
Cited by: 126
Author(s): Jing Wang, Yang Wang, Xu Zhang, Jiaqi Liu, Qianpeng Zhang, Yu Zhao, Jinghua Peng, Qin Feng, Jianye Dai, Shujun Sun, Yuwu Zhao, Liping Zhao, Yongyu Zhang, Yiyang Hu, Menghui Zhang
Software Mentions: 6
Published: almost 9 years ago

10.1155/2018/3243754

To Predict the Requirement of Pharmacotherapy by OGTT Glucose Levels in Women with GDM Classified by the IADPSG Criteria
Cited by: 4
Author(s): Gülen Yerlikaya, Veronica Falcone, Tina Stopp, Martina Mittlböck, Andrea Tura, Peter Husslein, Wolfgang Eppel
Software Mentions: 6
Published: over 8 years ago

10.1186/s13046-020-01739-z

LncRNA MYLK-AS1 facilitates tumor progression and angiogenesis by targeting miR-424-5p/E2F7 axis and activating VEGFR-2 signaling pathway in hepatocellular carcinoma
Cited by: 72
Author(s): Fei Teng, Juxiang Zhang, Qimeng Chang, Xubo Wu, Wei‐Guo Tang, Jianfa Wang, Jin-Feng Feng, Ziping Zhang, Zhiqiu Hu
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-86735-9

Machine learning is the key to diagnose COVID-19: a proof-of-concept study
Cited by: 17
Author(s): Cédric Gangloff, Sonia Rafi, Guillaume Bouzillé, Louis Soulat, Marc Cuggia
Software Mentions: 6
Published: over 5 years ago

10.3389/fped.2021.719352

Risk Identification of Bronchopulmonary Dysplasia in Premature Infants Based on Machine Learning
Cited by: 9
Author(s): Jia Lei, Tiankai Sun, Yongjiang Jiang, Ping Wu, Jinjian Fu, Tao Zhang, Eric McGrath
Software Mentions: 6
Published: about 5 years ago

10.3390/healthcare9030317

Automatic Evaluation of Heart Condition According to the Sounds Emitted and Implementing Six Classification Methods
Cited by: 5
Author(s): Manuel A. Soto-Murillo, Jorge I. Galván-Tejada, Carlos E. Galván-Tejada, José M. Celaya-Padilla, Huizilopoztli Luna-García, Rafael Magallanes‐Quintanar, Tania A. Gutiérrez-García, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: over 5 years ago

10.3389/fcvm.2020.580573

Comprehensive Identification of Key Genes Involved in Development of Diabetes Mellitus-Related Atherogenesis Using Weighted Gene Correlation Network Analysis
Cited by: 14
Author(s): Qi Huang, Guo-Xiong Deng, Rongguo Wei, Qiaoye Wang, Donghua Zou, Jinru Wei
Software Mentions: 6
Published: almost 6 years ago

10.1001/jamanetworkopen.2021.7737

Predictors of 30-Day Mortality Among Dutch Patients Undergoing Colorectal Cancer Surgery, 2011-2016
Cited by: 31
Author(s): Tom van den Bosch, A. K. Warps, Michael P.M. de Neree tot Babberich, C Stamm, Bart F. Geerts, Louis Vermeulen, Michel W.J.M. Wouters, Jan Willem T. Dekker, Rob A.E.M. Tollenaar, Pieter J. Tanis, Daniël M. Miedema, Dutch ColoRectal Audit
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-81506-y

Deep learning predicts postsurgical recurrence of hepatocellular carcinoma from digital histopathologic images
Cited by: 25
Author(s): Rikiya Yamashita, Long Jin, Atif Saleem, Daniel L. Rubin, Jeanne Shen
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2020.01121

Radiomics Based on CECT in Differentiating Kimura Disease From Lymph Node Metastases in Head and Neck: A Non-Invasive and Reliable Method
Cited by: 7
Author(s): Ying Zhang, Sheng-Bo Yu, Li Zhang, Lillian Kang
Software Mentions: 6
Published: about 6 years ago

10.1016/j.jaut.2019.06.009

Predicting drug-free remission in rheumatoid arthritis: A prospective interventional cohort study
Cited by: 28
Author(s): Kenneth F. Baker, Andrew Skelton, Dennis Lendrem, Adam Scadeng, Ben Thompson, Arthur G. Pratt, John D. Isaacs
Software Mentions: 6
Published: almost 7 years ago

10.3390/genes12091339

Integrated Bioinformatics Analysis Reveals Marker Genes and Potential Therapeutic Targets for Pulmonary Arterial Hypertension
Cited by: 8
Author(s): Aoqi Li, Jin He, Zhe Zhang, Shuhui Jiang, Yun Gao, Yuchun Pan, Huanan Wang, Lenan Zhuang
Software Mentions: 6
Published: about 5 years ago

10.3389/fneur.2020.00285

Neoplastic and Non-neoplastic Acute Intracerebral Hemorrhage in CT Brain Scans: Machine Learning-Based Prediction Using Radiomic Image Features
Cited by: 13
Author(s): Jawed Nawabi, Helge Kniep, Reza Kabiri, Gabriel Broocks, Tobias D Faizy, Christian J. Thaler, Gerhard Schön, Jens Fiehler, Uta Hanning
Software Mentions: 6
Published: over 6 years ago

10.1515/med-2021-0284

Nomogram prediction model for renal anaemia in IgA nephropathy patients
Cited by: 3
Author(s): Fēi Li, Ri-bao Wei, Yang Wang, Ting-Yu Su, Ping Li, Mengjie Huang, Xiangmei Chen
Software Mentions: 6
Published: over 5 years ago

10.1186/s13326-020-00228-8

Identifying disease trajectories with predicate information from a knowledge graph
Cited by: 4
Author(s): Wytze J. Vlietstra, Rein Vos, Marjan van den Akker, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2020.565206

Identification and Validation of Two Lung Adenocarcinoma-Development Characteristic Gene Sets for Diagnosing Lung Adenocarcinoma and Predicting Prognosis
Cited by: 10
Author(s): Cheng Liu, Xiang Li, Huili Shao, Dan Li
Software Mentions: 6
Published: almost 6 years ago

10.1002/acm2.13107

Clinical and radiological predictors of epidermal growth factor receptor mutation in nonsmall cell lung cancer
Cited by: 12
Author(s): Yutao Dang, Ruotian Wang, Kun Qian, Jie Lu, Haixiang Zhang, Yi Zhang
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2021.634841

miRNA-Based Signature Associated With Tumor Mutational Burden in Colon Adenocarcinoma
Cited by: 7
Author(s): Weijie Xue, Yixiu Wang, Yuwei Xie, Caifeng Yang, Zhiqi Gong, Chunyang Guan, Chuanliang Wei, Chunhui Zhu, Zhaojian Niu
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-92933-2

Exhaled volatilome analysis as a useful tool to discriminate asthma with other coexisting atopic diseases in women of childbearing age
Cited by: 6
Author(s): Rosa Alba Sola Martínez, Gema Lozano‐Terol, Julia Gallego‐Jara, Eva Morales, Esther Cantero‐Cano, Manuel Rolandi Sánchez-Solís, Luis García‐Marcos, Pedro Jiménez‐Guerrero, José Antonio Noguera-Velasco, Manuel Cánovas Díaz, Teresa De Diego
Software Mentions: 6
Published: about 5 years ago

10.1515/med-2019-0067

Prediction of recurrence-associated death from localized prostate cancer with a charlson comorbidity index–reinforced machine learning model
Cited by: 12
Author(s): Yi-Ting Lin, Michael Tian-Shyug Lee, Yen-Chun Huang, Chih-Kuang Liu, Yi-Tien Li, Mingchih Chen
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-019-56235-y

FABP4 and MMP9 levels identified as predictive factors for poor prognosis in patients with nonalcoholic fatty liver using data mining approaches and gene expression analysis
Cited by: 32
Author(s): Audrey Coilly, Christophe Desterke, Catherine Guettier, Didier Samuel, Franck Chiappini
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2021.673969

Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals
Cited by: 2
Author(s): Junjie Qin, Shi Xiao-li, Junming Xu, Simin Yuan, Bo Zheng, Enpu Zhang, Guangtao Huang, Li Guo, Ganggang Jiang, Shan Gao, Tian Cheng, Ruochun Guo, Zhicong Fu, Qingru Huang, Rentao Yang, Wenyong Zhang, Shenghui Li, Song Wu
Software Mentions: 6
Published: about 5 years ago

10.7150/ijbs.32899

A robust 6-mRNA signature for prognosis prediction of pancreatic ductal adenocarcinoma
Cited by: 14
Author(s): Chixing Zhou, Yue Zhao, Yuehui Yin, Zhiqiu Hu, Manar Atyah, Wanyong Chen, Zhi Qiang Meng, Huarong Mao, Qiang Zhou, Wei‐Guo Tang, Pengcheng Wang, Zhanming Li, Juyang Weng, Christiane Bruns, Marie Popp, Felix Popp, Qiongzhu Dong, Ning Ren
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-98089-3

Biopsy bacterial signature can predict patient tissue malignancy
Cited by: 10
Author(s): Glenn Hogan, Julia Eckenberger, Neegam Narayanen, Sidney P. Walker, Marcus J. Claesson, Mark Corrigan, Deirdre O’Hanlon, Mark Tangney
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2021.580886

Radiomics Nomogram for Identifying Sub-1 cm Benign and Malignant Thyroid Lesions
Cited by: 7
Author(s): Xinxin Wu, Jingjing Li, Yakui Mou, Yao Yao, Jingjing Cui, Ning Mao, Xuejiao Song
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2019.02120

Incorporating Statistical Test and Machine Intelligence Into Strain Typing of Staphylococcus haemolyticus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Cited by: 18
Author(s): Chia-Ru Chung, Hsin-Yao Wang, Frank Lien, Yi-Ju Tseng, Chun‐Hsien Chen, Tzong-Yi Lee, Tsui Ping Liu, Jorng-Tzong Horng, Jang Jih Lu
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2021.643025

Specific Microbial Taxa and Functional Capacity Contribute to Chicken Abdominal Fat Deposition
Cited by: 18
Author(s): Hai Xiang, Jiankang Gan, Daoshu Zeng, Jing Li, Hui Yu, Huabin Zhao, Ying Yang, Shuo Tan, Gen Li, Chaowei Luo, Zhen Xie, Guiping Zhao, Hua Li
Software Mentions: 6
Published: over 5 years ago

10.1161/JAHA.119.013152

Cardiac Myosin‐Binding Protein C to Diagnose Acute Myocardial Infarction in the Pre‐Hospital Setting
Cited by: 11
Author(s): Thomas E Kaier, Carsten Stengaard, Jack Marjot, Jacob Thorsted Sørensen, Bashir Alaour, Stavroula Stavropoulou-Tatla, Christian Juhl Terkelsen, Lindsey W. Williams, Kristian Thygesen, Ekkehard Weber, Michael Marber, Hans Erik Bøtker
Software Mentions: 6
Published: about 7 years ago

10.3389/fnagi.2021.602781

Exploring the Key Genes and Identification of Potential Diagnosis Biomarkers in Alzheimer’s Disease Using Bioinformatics Analysis
Cited by: 20
Author(s): Wuhan Yu, Weihua Yu, Yan Yang, Yang Lü
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2019.01111

Translated Long Non-Coding Ribonucleic Acid ZFAS1 Promotes Cancer Cell Migration by Elevating Reactive Oxygen Species Production in Hepatocellular Carcinoma
Cited by: 17
Author(s): Zhi-Wei Guo, Yijun Meng, Xiang-Ming Zhai, Chen Xie, Na Zhao, Min Li, Chen Zhou, Kun Li, Tiancai Liu, Xu Yang, Yangyang Wu
Software Mentions: 6
Published: almost 7 years ago

10.3389/fpsyg.2018.00830

Short Forms of Wechsler Scales Assessing the Intellectually Gifted Children Using Simulation Data
Cited by: 17
Author(s): Alexandre Aubry, Béatrice Bourdin
Software Mentions: 6
Published: over 8 years ago

10.1128/mBio.00180-20

Systemic Inflammatory Mediators Are Effective Biomarkers for Predicting Adverse Outcomes in Clostridioides difficile Infection
Cited by: 16
Author(s): Michael G. Dieterle, Rosemary Putler, D. Alexander Perry, Anitha Menon, Lisa Abernathy-Close, Naomi Perlman, Aline Penkevich, Alex Standke, Micah Keidan, Kimberly C. Vendrov, Ingrid L. Bergin, Vincent B. Young, Krishna Rao
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-66806-z

CD96, a new immune checkpoint, correlates with immune profile and clinical outcome of glioma
Cited by: 26
Author(s): Fangkun Liu, Jing Huang, Fengjiao He, Xiaodong Ma, Fan Fan, Ming Meng, Zhuo Yang, Jintao Zhang
Software Mentions: 5
Published: about 6 years ago

10.1111/jcmm.15517

Carboxypeptidase A6 was identified and validated as a novel potential biomarker for predicting the occurrence of active ulcerative colitis
Cited by: 3
Author(s): Haizhou Wang, Meng Zhang, Mengna Zhang, Fan Wang, Jing Liu, Qiu Zhao
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2020.00988

Identification of Candidate Biomarkers for Salt Sensitivity of Blood Pressure by Integrated Bioinformatics Analysis
Cited by: 3
Author(s): Chen Chen, Guanzhi Liu, Yue‐Yuan Liao, Chao Chu, Wenfang Zheng, Yang Wang, Jiawen Hu, Qiang Ma, Keke Wang, Yan Yu, Yue Yuan, Jianjun Mu
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-89148-w

Dilute pilocarpine test for diagnosis of Adie’s tonic pupil
Cited by: 3
Author(s): Yung Ju Yoo, Jeong Min Hwang, Hee Kyung Yang
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.620945

Individualized Prediction of Colorectal Cancer Metastasis Using a Radiogenomics Approach
Cited by: 2
Author(s): Qin Liu, Jie Li, Lin Xu, Jiasi Wang, Zong Yuan Zeng, Jiangping Fu, Xuan Huang, Yanpeng Chu, Jing Wang, Hongyu Zhang, Fanxin Zeng
Software Mentions: 5
Published: over 5 years ago

10.1128/mBio.00765-21

Markers of Polyfunctional SARS-CoV-2 Antibodies in Convalescent Plasma
Cited by: 51
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2019.00527

Immunometabolic Signatures Predict Risk of Progression to Active Tuberculosis and Disease Outcome
Cited by: 37
Author(s): Fergal J. Duffy, January Weiner, Scott G. Hansen, David L. Tabb, Sara Suliman, Ethan Thompson, Jeroen Maertzdorf, Steven G. Smith, Gerard Tromp, Shreemanta K. Parida, Drew Dover, Michael K. Axthelm, Jayne S. Sutherland, Hazel M. Dockrell, Tom H. M. Ottenhoff, Thomas J. Scriba, Louis J. Picker, Gerhard Walzl, Stefan H. E. Kaufmann, Daniel E. Zak
Software Mentions: 5
Published: over 7 years ago

10.1186/s13036-018-0112-9

Machine learning analysis of microbial flow cytometry data from nanoparticles, antibiotics and carbon sources perturbed anaerobic microbiomes
Cited by: 10
Author(s): Abhishek S. Dhoble, Pratik Lahiri, Kaustubh Bhalerao
Software Mentions: 5
Published: about 8 years ago

10.1111/jcmm.16799

Comprehensive characterization of pathological stage‐related genes of papillary thyroid cancer along with survival prediction
Cited by: 1
Author(s): Lei Xu, Liang Feng, Haiyan Li, Menglong Li, Yongmei Xie, Zhihui Li, Yanzhi Guo
Software Mentions: 5
Published: about 5 years ago

10.3389/fcell.2021.707970

C1GALT1, Negatively Regulated by miR-181d-5p, Promotes Tumor Progression via Upregulating RAC1 in Lung Adenocarcinoma
Cited by: 7
Author(s): Dong Xiao, Yongyu Liu, Xinzhou Deng, Jun Shao, Shuangyue Tian, Shuang Chen, Ronald Huang, Ziao Lin, Chunli Chen, Li Shen
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2021.653209

Exploring the Imbalance of Periodontitis Immune System From the Cellular to Molecular Level
Cited by: 11
Author(s): Long-Fei He, Lijuan Liu, Ti Li, Deshu Zhuang, Jiayin Dai, Bo Wang, Liangjia Bi
Software Mentions: 5
Published: over 5 years ago

10.3389/fmed.2021.690825

Liver Stiffness Is a Predictor of Rebleeding in Patients With Hepatitis B-Related Cirrhosis: A Real-World Cohort Study
Cited by: 6
Author(s): Lingxiang Liu, Yuan Nie, Yue Zhang, Qi Liu, Xuan Zhu
Software Mentions: 5
Published: about 5 years ago

10.7150/jca.50443

Six Novel Biomarkers for Diagnosis and Prognosis of Esophageal squamous cell carcinoma: validated by scRNA-seq and qPCR
Cited by: 24
Author(s): Liuhai Zheng, Linzhi Li, Jun Xie, Hai Jin, Nianyong Zhu
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.580809

The Growth Trend Predictions in Pulmonary Ground Glass Nodules Based on Radiomic CT Features
Cited by: 8
Author(s): Chen Gao, Jing Yan, Yifan Luo, Linyu Wu, Peipei Pang, Ping Xiang, Maosheng Xu
Software Mentions: 5
Published: almost 6 years ago

10.7150/thno.55209

<i>Candida albicans</i> disorder is associated with gastric carcinogenesis
Cited by: 48
Author(s): Min Zhong, Yubo Xiong, Jiabao Zhao, Zhi Gao, Jianchao Ma, Zhengxin Wu, Yongxi Song, Xuehui Hong
Software Mentions: 5
Published: over 5 years ago

10.1186/2197-425X-2-10

Reliability of the nitrogen washin-washout technique to assess end-expiratory lung volume at variable PEEP and tidal volumes
Cited by: 10
Author(s): Jean-Christophe Richard, Céline Pouzot, Alfredo Pinzón, J. S. Torres González, Maciej Orkisz, B. Neyran, Marcela Hernández Hoyos, F. Lávenne, Claude Guérin
Software Mentions: 5
Published: over 12 years ago

10.1038/s41598-020-61496-z

Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma
Cited by: 16
Author(s): Manousos Makridakis, Georgia Kontostathi, Eleni Petra, Rafael Stroggilos, Vasiliki Lygirou, Szymon K. Filip, Flore Duranton, Harald Mischak, Àngel Argilés, Jérôme Zoidakis, Antonia Vlahou
Software Mentions: 5
Published: over 6 years ago

10.3389/fcell.2021.630355

Application of Immune Infiltration Signature and Machine Learning Model in the Differential Diagnosis and Prognosis of Bone-Related Malignancies
Cited by: 9
Author(s): Guoqi Li, Yi‐Kai Wang, Hao Zhou, Lin-Guang Jin, Chunyu Wang, Mugahed Abdullah Hasan Albahde, Yan Wu, Hengyuan Li, Wenkan Zhang, Binghao Li
Software Mentions: 5
Published: over 5 years ago

10.1038/srep05193

Quantitative scoring of differential drug sensitivity for individually optimized anticancer therapies
Cited by: 230
Author(s): Bhagwan Yadav, Tea Pemovska, Agnieszka Szwajda, Evgeny Kulesskiy, Mika Kontro, Reijo Karjalainen, Muntasir Mamun Majumder, Disha Malani, Astrid Murumägi, Jonathan Knowles, Kimmo Porkka, Caroline A. Heckman, Olli Kallioniemi, Krister Wennerberg, Tero Aittokallio
Software Mentions: 5
Published: over 12 years ago

10.3389/fonc.2020.541849

Radiomics Nomogram of DCE-MRI for the Prediction of Axillary Lymph Node Metastasis in Breast Cancer
Cited by: 18
Author(s): Ning Mao, Yi Dai, Fan Lin, Heng Ma, Shaofeng Duan, Haizhu Xie, Wenlei Zhao, Nan Hong
Software Mentions: 5
Published: almost 6 years ago

10.3389/fcell.2021.712196

A Novel Classifier Based on Urinary Proteomics for Distinguishing Between Benign and Malignant Ovarian Tumors
Cited by: 11
Author(s): Maowei Ni, Jie Zhou, Zhihui Zhu, Jingtao Yuan, Wei‐Jiang Gong, Jun Zhu, Zhong Zheng, Huajun Zhao
Software Mentions: 5
Published: about 5 years ago

10.3390/jcm8010050

Efficacy of Integrating a Novel 16-Gene Biomarker Panel and Intelligence Classifiers for Differential Diagnosis of Rheumatoid Arthritis and Osteoarthritis
Cited by: 24
Author(s): Nguyen Phuoc Long, Seongoh Park, Nguyễn Hoàng Anh, Jung Eun Min, Sang Jun Yoon, Hyung Min Kim, Tran Diem Nghi, Dong Kyu Lim, Jeong Hill Park, Jong-Tae Lim, Sung Won Kwon
Software Mentions: 5
Published: over 7 years ago

10.3389/fonc.2018.00674

Identification of Serum MicroRNAs as Novel Biomarkers in Esophageal Squamous Cell Carcinoma Using Feature Selection Algorithms
Cited by: 28
Author(s): Deqiang Zheng, Yuanjie Ding, Qing Ma, Lei Zhao, Xudong Guo, Yi Shen, Yan He, Wenqiang Wei, Fen Liu
Software Mentions: 5
Published: over 7 years ago

10.1038/s41392-020-00221-8

An individualized immune signature of pretreatment biopsies predicts pathological complete response to neoadjuvant chemoradiotherapy and outcomes in patients with esophageal squamous cell carcinoma
Cited by: 17
Author(s): Chaoqi Zhang, Guochao Zhang, Nan Sun, Zhen Zhang, Liyan Xue, Zhihui Zhang, Haijun Yang, Yuejun Luo, Xiaoli Zheng, Yonglei Zhang, Yufen Yuan, Ruixue Lei, Zhaoyang Yang, Bo Zheng, Le Wang, Yun Cao, Feng Wang, Sihui Wang, Shugeng Gao, Qi Xue, Yi Zhang, Jie He
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2021.670138

Integrated Analysis of ceRNA Network Reveals Prognostic and Metastasis Associated Biomarkers in Breast Cancer
Cited by: 8
Author(s): Qian Da, Qinghui Zheng, Danping Wu, Buyun Ye, Yang‐Yang Qian, Tao Zhou, Jie Qiu, Xuli Meng
Software Mentions: 5
Published: over 5 years ago

10.3389/fcell.2020.599494

An Eight-CircRNA Assessment Model for Predicting Biochemical Recurrence in Prostate Cancer
Cited by: 61
Author(s): Shuo Wang, Wei Su, Chuanfan Zhong, Taowei Yang, Wenbin Chen, Cheng Guo, Zezhen Liu, Kuan-Hung Wu, Weibo Zhong, Bingkun Li, Xiangming Mao, Jianming Lü
Software Mentions: 5
Published: almost 6 years ago

10.3389/fcimb.2021.714162

Characterization of the Oral and Esophageal Microbiota in Esophageal Precancerous Lesions and Squamous Cell Carcinoma
Cited by: 12
Author(s): Zhengqi Li, Lizhou Dou, Yueming Zhang, Shasha He, Di Zhao, Cui Hao, Gonghua Song, Wei Zhang, Yong Liu, Guiqi Wang
Software Mentions: 5
Published: about 5 years ago

10.1186/s12967-021-02716-6

The potential role of chemotaxis and the complement system in the formation and progression of thoracic aortic aneurysms inferred from the weighted gene coexpression network analysis
Cited by: 5
Author(s): Chuxiang Lei, Dan Yang, Wenlin Chen, Haoxuan Kan, Feifei Xu, Hui Zhang, Wei Wang, Lei Ji, Yuehong Zheng
Software Mentions: 5
Published: over 5 years ago

10.1002/2211-5463.12744

Fecal microbiota transplantation results in bacterial strain displacement in patients with inflammatory bowel diseases
Cited by: 13
Author(s): Manli Zou, Zhuye Jie, Bota Cui, Honggang Wang, Qiang Feng, Yuanqiang Zou, Xiuqing Zhang, Huanming Yang, Jian Wang, Faming Zhang, Huijue Jia
Software Mentions: 5
Published: almost 7 years ago

10.3390/jcm9082341

Targeted Urine Metabolomics for Monitoring Renal Allograft Injury and Immunosuppression in Pediatric Patients
Cited by: 12
Author(s): Tara K. Sigdel, Andrew Schroeder, Joshua Yang, Reuben D. Sarwal, Juliane Liberto, Minnie M. Sarwal
Software Mentions: 5
Published: about 6 years ago

10.3389/fneur.2021.633390

Development of a Prognostic Five-Gene Signature for Diffuse Lower-Grade Glioma Patients
Cited by: 3
Author(s): Qiang Zhang, Wenhao Liu, Shunbin Luo, Fuchen Xie, Xiaojun Liu, Ren-ai Xu, Lixi Chen, Zhi-Lin Su
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2021.650026

Fecal Microbiota and Gut Microbe-Derived Extracellular Vesicles in Colorectal Cancer
Cited by: 33
Author(s): Jihye Park, Nam-Eun Kim, Hyuk Yoon, Cheol Min Shin, Nayoung Kim, Dong Hoon Lee, Jae Yong Park, Chang Hwan Choi, Jae Gyu Kim, Eui Chong Kim, Tae-Seop Shin, Jinho Yang, Young Soo Park
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2020.591667

Effects of RNA Binding Proteins on the Prognosis and Malignant Progression in Prostate Cancer
Cited by: 13
Author(s): Xiaoliang Hua, Shengdong Ge, Juan Chen, Li Zhang, Sheng Tai, Chaozhao Liang
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2021.685980

Role of NRP1 in Bladder Cancer Pathogenesis and Progression
Cited by: 15
Author(s): Yun Dong, Weiming Ma, Zengliang Shi, Zhiguo Zhang, Jing Zhou, Yang Li, Shaoqi Zhang, Kun Pang, Bibo Li, Wen-da Zhang, Tao Fan, Guanghao Zhu, Xue Li, Rui Li, Ying Liu, Lin Hao, Conghui Han
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.675104

ALOX5AP Predicts Poor Prognosis by Enhancing M2 Macrophages Polarization and Immunosuppression in Serous Ovarian Cancer Microenvironment
Cited by: 13
Author(s): Yu‐Tao Xiang, Li-Mei An, Xiangxiang Wang, Chenyi Zhang, Wei Huang, Ce Sun, Rongrong Li, Hongbing Ma, Hongyan Wang, Min Gao
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-48488-4

Predicting Breast Cancer in Breast Imaging Reporting and Data System (BI-RADS) Ultrasound Category 4 or 5 Lesions: A Nomogram Combining Radiomics and BI-RADS
Cited by: 75
Author(s): Weiquan Luo, Qing-xiu Huang, Xiaowen Huang, Hang-Tong Hu, Fuqiang Zeng, Wei Wang
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-46404-4

Tissue amino acid profiles are characteristic of tumor type, malignant phenotype, and tumor progression in pancreatic tumors
Cited by: 16
Author(s): Nobuyoshi Hiraoka, Sakino Toue, Chisato Okamoto, Shinichi Kikuchi, Yoshinori Ino, Rie Yamazaki-Itoh, Minoru Esaki, Satoshi Nara, Yoji Kishi, Akira Imaizumi, Nobukazu Ono, Kazuaki Shimada
Software Mentions: 5
Published: about 7 years ago

10.3389/fonc.2021.626187

Dysregulation of Transcription Factor Networks Unveils Different Pathways in Human Papillomavirus 16-Positive Squamous Cell Carcinoma and Adenocarcinoma of the Uterine Cervix
Cited by: 9
Author(s): Saloê Bispo, Ticiana Della Justina Farias, Patrícia Savio de Araujo-Souza, Ricardo Cintra, Hellen Geremias dos Santos, Natasha Andressa Nogueira Jorge, Mauro A. A. Castro, Gabriel Wajnberg, Nicole de Miranda Scherer, Maria Luiza Nogueira Dias Genta, Jesus Paula Carvalho, Luísa Lina Villa, Laura Sichero, Fábio Passetti
Software Mentions: 5
Published: over 5 years ago

10.3390/jcm8101666

The Extended Postoperative Care-Score (EXPO-Score)—An Objective Tool for Early Identification of Indication for Extended Postoperative Care
Cited by: 2
Author(s): Timo Iden, Amke Caliebe, Jochen Renner, Maj-Britt Hertz, Jan Höcker, Päivi Suvanto-Scholz, Markus Steinfath, Norbert Weiler, Matthias Gruenewald
Software Mentions: 5
Published: almost 7 years ago

10.3389/fendo.2021.697437

Quotient of Waist Circumference and Body Mass Index: A Valuable Indicator for the High-Risk Phenotype of Obesity
Cited by: 9
Author(s): Xiao-cong Liu, Yu Huang, Kenneth Lo, Yu-Qing Huang, Jiyan Chen, Yingqing Feng
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2019.00898

Genome-Wide Identification of a Novel Eight-lncRNA Signature to Improve Prognostic Prediction in Head and Neck Squamous Cell Carcinoma
Cited by: 26
Author(s): Bowen Yang, Jiming Shen, Xu Lu, Ying Chen, Xiaofang Che, Xiujuan Qu, Yunpeng Liu, Yuee Teng, Zhi Li
Software Mentions: 5
Published: about 7 years ago

10.1002/jrsm.1444

<scp>IPDmada</scp> : An R Shiny tool for analyzing and visualizing individual patient data meta‐analyses of diagnostic test accuracy
Cited by: 7
Author(s): Junfeng Wang, Willem R. Keusters, Lingzi Wen, Mariska Leeflang
Software Mentions: 5
Published: about 6 years ago

10.1128/mSystems.00579-19

Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies
Cited by: 48
Author(s): Cecilia Noecker, Hsuan-Chao Chiu, Christopher A. McNally, Elhanan Borenstein
Software Mentions: 5
Published: almost 7 years ago

10.3390/jcm10112524

Evaluation of Intracranial Hypertension in Traumatic Brain Injury Patient: A Noninvasive Approach Based on Cranial Computed Tomography Features
Cited by: 4
Author(s): Yingchi Shan, Yihua Li, Xuxu Xu, Junfeng Feng, Xiang Wu, Guoyi Gao
Software Mentions: 5
Published: over 5 years ago

10.1186/s13014-020-01699-w

Imaging biomarkers of contrast-enhanced computed tomography predict survival in oesophageal cancer after definitive concurrent chemoradiotherapy
Cited by: 4
Author(s): Chengbing Zeng, Tian‐Tian Zhai, Jianzhou Chen, Longjia Guo, Bao-Tian Huang, Hong Guo, Guozhi Lv, Tingting Zhuang, Weitong Liu, Ting Luo, Yanxuan Wu, Guopeng Peng, Derui Li, Chuangzhen Chen
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.574228

Radiomic Feature-Based Predictive Model for Microvascular Invasion in Patients With Hepatocellular Carcinoma
Cited by: 18
Author(s): Mu He, Zhang Peng, Xiao Ma, Baochun He, Chihua Fang, Fucang Jia
Software Mentions: 5
Published: almost 6 years ago

10.1093/hmg/ddz043

PAX7 target gene repression is a superior FSHD biomarker than DUX4 target gene activation, associating with pathological severity and identifying FSHD at the single-cell level
Cited by: 39
Author(s): Christopher R. S. Banerji, Peter S. Zammit
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-019-43091-z

A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model
Cited by: 10
Author(s): Tatjana Sajic, Rodolfo Ciuffa, Vera Lemos, Pan Xu, Valentina Leone, Chen Li, Evan G. Williams, Georgios Makris, Amir Banaei‐Esfahani, Mathias Heikenwälder, Kristina Schoonjans, Ruedi Aebersold
Software Mentions: 5
Published: over 7 years ago

10.3389/fonc.2019.01200

C-Reactive Protein-to-Albumin Ratio as Prognostic Marker for Anal Squamous Cell Carcinoma Treated With Chemoradiotherapy
Cited by: 18
Author(s): Daniel Martin, Franz Rödel, Panagiotis Balermpas, Ria Winkelmann, Emmanouil Fokas, Claus Rödel
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-019-40831-z

Preoperative Prediction of Axillary Lymph Node Metastasis in Breast Cancer Using Mammography-Based Radiomics Method
Cited by: 49
Author(s): Jingbo Yang, Tao Wang, Lifeng Yang, Yübo Wang, Hongmei Li, Xiaobo Zhou, Weiling Zhao, Junchan Ren, Xiaoyong Li, Jie Tian, Luqi Huang
Software Mentions: 5
Published: over 7 years ago

10.3389/fonc.2021.729219

A 4-Gene Signature Associated With Recurrence in Low- and Intermediate-Risk Endometrial Cancer
Cited by: 5
Author(s): Diocésio Alves Pinto de Andrade, Luciane Sussuchi da Silva, Ana Carolina Laus, Marcos Alves de Lima, Gustavo Nóriz Berardinelli, Vinícius Duval da Silva, Graziela de Macêdo Matsushita, Murilo Bonatelli, Aline Larissa Virginio da Silva, Adriane Feijó Evangelista, Jesus Paula Carvalho, Rui Manuel Reis, Ricardo dos Reis
Software Mentions: 5
Published: about 5 years ago

Projects: cran: pROC

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Science Score: 95/100

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Papers Mentioning pROC 1,740