cran: pROC | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0035077

Hub-Centered Gene Network Reconstruction Using Automatic Relevance Determination
Cited by: 20
Author(s): M. Bock, Soichi Ogishima, Hiroshi Tanaka, Stefan Krämer, Lars Kaderali
Software Mentions: 6
Published: over 12 years ago

10.3389/fonc.2021.634841

miRNA-Based Signature Associated With Tumor Mutational Burden in Colon Adenocarcinoma
Cited by: 7
Author(s): Weijie Xue, Yixiu Wang, Yuwei Xie, Caifeng Yang, Zhiqi Gong, Chunyang Guan, Chuanliang Wei, Chunhui Zhu, Zhaojian Niu
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2021.673969

Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals
Cited by: 2
Author(s): Junjie Qin, Shi Xiao-li, Junming Xu, Simin Yuan, Bo Zheng, Enpu Zhang, Guangtao Huang, Li Guo, Ganggang Jiang, Shan Gao, Tian Cheng, Ruochun Guo, Zhicong Fu, Qingru Huang, Rentao Yang, Wenyong Zhang, Shenghui Li, Song Wu
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2019.01111

Translated Long Non-Coding Ribonucleic Acid ZFAS1 Promotes Cancer Cell Migration by Elevating Reactive Oxygen Species Production in Hepatocellular Carcinoma
Cited by: 17
Author(s): Zhi-Wei Guo, Yijun Meng, Xiang-Ming Zhai, Chen Xie, Na Zhao, Min Li, Chen Zhou, Kun Li, Tiancai Liu, Xu Yang, Yangyang Wu
Software Mentions: 6
Published: about 5 years ago

10.3389/fchem.2021.659656

iMAP: A Web Server for Metabolomics Data Integrative Analysis
Cited by: 4
Author(s): Di Zhou, Wen-Hong Zhu, Tao Sun, Yang Wang, Yi Chi, Tianlu Chen, Jingchao Lin
Software Mentions: 6
Published: over 3 years ago

10.1002/1878-0261.12062

Methylation profiling of paediatric pilocytic astrocytoma reveals variants specifically associated with tumour location and predictive of recurrence
Cited by: 14
Author(s): Alexandra Sexton-Oates, Andrew Dodgshun, Volker Hovestadt, David Jones, David M. Ashley, Michael J. Sullivan, Duncan MacGregor, Richard Saffery
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0118573

Transcriptomics of Maternal and Fetal Membranes Can Discriminate between Gestational-Age Matched Preterm Neonates with and without Cognitive Impairment Diagnosed at 18–24 Months
Cited by: 16
Author(s): Athina Pappas, Tinnakorn Chaiworapongsa, Roberto Romero, Steven J. Korzeniewski, Josef C. Cortez, Gaurav Bhatti, Nardhy Gomez-López, Sonia S. Hassan, Seetha Shankaran, Adi L. Tarca
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0251385

Improving the diagnostic recognition of thoracic endometriosis: Spotlight on a new histo-morphological indicator
Cited by: 1
Author(s): Okechukwu Charles Okafor, N Ezemba, Nnaemeka Thaddeus Onyishi, Kevin Nwabueze Ezike
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2020.01121

Radiomics Based on CECT in Differentiating Kimura Disease From Lymph Node Metastases in Head and Neck: A Non-Invasive and Reliable Method
Cited by: 7
Author(s): Ying Zhang, Sheng-Bo Yu, Li Zhang, Lillian Kang
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0206862

Optimal intensive care outcome prediction over time using machine learning
Cited by: 64
Author(s): Christopher Meiring, Abhishek Dixit, Steve Harris, Niall MacCallum, David Brealey, Peter Watkinson, Andrew Jones, Simon Ashworth, Richard Beale, Stephen Brett, Mervyn Singer, Ari Ercole
Software Mentions: 6
Published: about 6 years ago

10.1155/2020/1686480

miRNA-Based Feature Classifier Is Associated with Tumor Mutational Burden in Head and Neck Squamous Cell Carcinoma
Cited by: 7
Author(s): Yu Xia, Qi Wang, Xiaolin Huang, Xinhai Yin, Jukun Song, Ke Zhao, Xiaofeng Duan
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13613-021-00883-9

Prevalence and risk factors of hemodynamic instability associated with preload-dependence during continuous renal replacement therapy in a prospective observational cohort of critically ill patients
Cited by: 6
Author(s): G Chazot, Laurent Bitker, Mehdi Mezidi, Nader Chebib, Paul Chabert, Louis Chauvelot, Laure Folliet, Guillaume David, Judith Provoost, Hodane Yonis, Jean-Christophe Richard
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0197074

Multi-site evaluation of the LN34 pan-lyssavirus real-time RT-PCR assay for post-mortem rabies diagnostics
Cited by: 43
Author(s): Crystal M. Gigante, Lisa Dettinger, James Powell, Melanie Seiders, Rene Edgar Condori, Richard Griesser, Kenneth Okogi, Maria P. Carlos, Kendra N. Pesko, Mike Breckenridge, Edson Michael M. Simon, Maria Yna Joyce Chu, April Davis, Scott Brunt, Lillian A. Orciari, Pamela A. Yager, William C. Carson, Claire Hartloge, Jeremiah T. Saliki, Susan Sánchez, Mojgan Deldari, Kristina Hsieh, Ashutosh Wadhwa, Kimberly Wilkins, Veronica Yung Peredo, Patricia Rabideau, Nina Gruhn, Rolain Cadet, Shrikrishna Isloor, Sujith S Nath, Tomy Joseph, Jinxin Gao, Ryan M. Wallace, Mary G. Reynolds, Victoria A. Olson, Li Yu
Software Mentions: 6
Published: over 6 years ago

10.3389/fcvm.2020.580573

Comprehensive Identification of Key Genes Involved in Development of Diabetes Mellitus-Related Atherogenesis Using Weighted Gene Correlation Network Analysis
Cited by: 14
Author(s): Qi Huang, Guo-Xiong Deng, Rongguo Wei, Qiaoye Wang, Donghua Zou, Jinru Wei
Software Mentions: 6
Published: about 4 years ago

10.1186/s13613-017-0263-8

Diagnostic accuracy of quantitative neuromuscular ultrasound for the diagnosis of intensive care unit-acquired weakness: a cross-sectional observational study
Cited by: 49
Author(s): Esther Witteveen, Juultje Sommers, Luuk Wieske, Jonne Doorduin, Nens van Alfen, Marcus J. Schultz, Ivo N. van Schaik, Janneke Horn, Camiel Verhamme
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0210467

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets
Cited by: 0
Author(s): Katerina Taškova, Jean-Fred Fontaine, Ralf Mrowka, Miguel A. Andrade‐Navarro
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2017.02222

Gut Microbial Dysbiosis Is Associated with Altered Hepatic Functions and Serum Metabolites in Chronic Hepatitis B Patients
Cited by: 126
Author(s): Jing Wang, Yang Wang, Xu Zhang, Jiaqi Liu, Qianpeng Zhang, Yu Zhao, Jinghua Peng, Qin Feng, Jianye Dai, Shujun Sun, Yuwu Zhao, Liping Zhao, Yongyu Zhang, Yiyang Hu, Menghui Zhang
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0177840

Identifying artemisinin resistance from parasite clearance half-life data with a simple Shiny web application
Cited by: 3
Author(s): Tun Stt., Yoel Lubell, Arjen M. Dondorp, Tom Fieldman, Kyaw Myo Tun, O. Celhay, Xin Hui S Chan, Sompob Saralamba, Lisa J. White
Software Mentions: 6
Published: over 7 years ago

10.1186/s13073-020-00729-2

Burden of tumor mutations, neoepitopes, and other variants are weak predictors of cancer immunotherapy response and overall survival
Cited by: 59
Author(s): M. C. Wood, Benjamin R. Weeder, Julianne K. David, Abhinav Nellore, Reid F. Thompson
Software Mentions: 6
Published: over 4 years ago

10.1001/jamanetworkopen.2021.7737

Predictors of 30-Day Mortality Among Dutch Patients Undergoing Colorectal Cancer Surgery, 2011-2016
Cited by: 31
Author(s): Tom van den Bosch, A. K. Warps, Michael P.M. de Neree tot Babberich, C Stamm, Bart F. Geerts, Louis Vermeulen, Michel W.J.M. Wouters, Jan Willem T. Dekker, Rob A.E.M. Tollenaar, Pieter J. Tanis, Daniël M. Miedema, Dutch ColoRectal Audit
Software Mentions: 6
Published: over 3 years ago

10.1161/JAHA.119.013152

Cardiac Myosin‐Binding Protein C to Diagnose Acute Myocardial Infarction in the Pre‐Hospital Setting
Cited by: 11
Author(s): Thomas E Kaier, Carsten Stengaard, Jack Marjot, Jacob Thorsted Sørensen, Bashir Alaour, Stavroula Stavropoulou-Tatla, Christian Juhl Terkelsen, Lindsey W. Williams, Kristian Thygesen, Ekkehard Weber, Michael Marber, Hans Erik Bøtker
Software Mentions: 6
Published: over 5 years ago

10.1002/acm2.13107

Clinical and radiological predictors of epidermal growth factor receptor mutation in nonsmall cell lung cancer
Cited by: 12
Author(s): Yutao Dang, Ruotian Wang, Kun Qian, Jie Lu, Haixiang Zhang, Yi Zhang
Software Mentions: 6
Published: almost 4 years ago

10.1016/j.jaut.2019.06.009

Predicting drug-free remission in rheumatoid arthritis: A prospective interventional cohort study
Cited by: 28
Author(s): Kenneth F. Baker, Andrew Skelton, Dennis Lendrem, Adam Scadeng, Ben Thompson, Arthur G. Pratt, John D. Isaacs
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13326-020-00228-8

Identifying disease trajectories with predicate information from a knowledge graph
Cited by: 4
Author(s): Wytze J. Vlietstra, Rein Vos, Marjan van den Akker, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-019-56235-y

FABP4 and MMP9 levels identified as predictive factors for poor prognosis in patients with nonalcoholic fatty liver using data mining approaches and gene expression analysis
Cited by: 32
Author(s): Audrey Coilly, Christophe Desterke, Catherine Guettier, Didier Samuel, Franck Chiappini
Software Mentions: 6
Published: almost 5 years ago

10.7150/ijbs.32899

A robust 6-mRNA signature for prognosis prediction of pancreatic ductal adenocarcinoma
Cited by: 14
Author(s): Chixing Zhou, Yue Zhao, Yuehui Yin, Zhiqiu Hu, Manar Atyah, Wanyong Chen, Zhi Qiang Meng, Huarong Mao, Qiang Zhou, Wei‐Guo Tang, Pengcheng Wang, Zhanming Li, Juyang Weng, Christiane Bruns, Marie Popp, Felix Popp, Qiongzhu Dong, Ning Ren
Software Mentions: 6
Published: almost 6 years ago

10.3390/diagnostics9010008

Feature Extraction in Motor Activity Signal: Towards a Depression Episodes Detection in Unipolar and Bipolar Patients
Cited by: 24
Author(s): Laura A. Zanella-Calzada, Carlos E. Galván-Tejada, Nubia M. Chávez-Lamas, Ma. del Carmen Gracia-Cortés, Rafael Magallanes‐Quintanar, José M. Celaya-Padilla, Jorge I. Galván-Tejada, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: almost 6 years ago

10.3390/diagnostics11040623

Impact of Chronic Prostatitis on the PI-RADS Score 3: Proposal for the Addition of a Novel Binary Suffix
Cited by: 1
Author(s): Sascha Merat, Theresa Blümlein, Markus Klarhöfer, Dominik Nickel, Gad Singer, Frank G. Zöllner, Stefan O. Schoenberg, Kubik-Huch Ra, Daniel Hausmann, Lukas Hefermehl
Software Mentions: 6
Published: over 3 years ago

10.3390/diagnostics11010005

The Role of Urine F2-isoprostane Concentration in Delayed Cerebral Ischemia after Aneurysmal Subarachnoid Haemorrhage—A Poor Prognostic Factor
Cited by: 4
Author(s): Karol Wiśniewski, Marta Popęda, Bartłomiej Tomasik, Michał Bieńkowski, Ernest J. Bobeff, Ludomir Stefańczyk, Krzysztof Tybor, Marlena Hupało, Dariusz J. Jaskólski
Software Mentions: 6
Published: almost 4 years ago

10.1155/2021/6680883

MXRA5 Is a Novel Immune-Related Biomarker That Predicts Poor Prognosis in Glioma
Cited by: 8
Author(s): Jinzhang Sun, Jinhao Zhang, Jia-Bo Li, Feng Yuan, Luqing Tong, Xu-Ya Wang, Lulu Chen, Xiaoguang Fan, Yiming Zhang, Xiao Ren, Chen Zhang, Shukun Yu, Xuejun Yang
Software Mentions: 6
Published: over 3 years ago

10.15252/emmm.202012881

Fragmentation patterns and personalized sequencing of cell‐free DNA in urine and plasma of glioma patients
Cited by: 47
Author(s): Florent Moulière, Christopher G. Smith, Katrin Heider, Jing Su, Ymke van der Pol, Mark Thompson, James A. Morris, Jonathan C. M. Wan, Dineika Chandrananda, James Hadfield, Marta Grzelak, Irena Hudecova, Dominique‐Laurent Couturier, Wendy N. Cooper, Hui Zhao, Davina Gale, Matthew Eldridge, Colin Watts, Kevin M. Brindle, Nitzan Rosenfeld, Richard Mair
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-98089-3

Biopsy bacterial signature can predict patient tissue malignancy
Cited by: 10
Author(s): Glenn Hogan, Julia Eckenberger, Neegam Narayanen, Sidney P. Walker, Marcus J. Claesson, Mark Corrigan, Deirdre O’Hanlon, Mark Tangney
Software Mentions: 6
Published: about 3 years ago

10.1002/ctm2.156

A three‐lncRNA signature of pretreatment biopsies predicts pathological response and outcome in esophageal squamous cell carcinoma with neoadjuvant chemoradiotherapy
Cited by: 17
Author(s): Chaoqi Zhang, Zhihui Zhang, Guochao Zhang, Liyan Xue, Haijun Yang, Yuejun Luo, Xiaoli Zheng, Yonglei Zhang, Yufen Yuan, Ruixue Lei, Zhaoyang Yang, Bo Zheng, Zhen Zhang, Le Wang, Yun Cao, Sihui Wang, Feng Wang, Lingling Fang, Qingpeng Zeng, Jiagen Li, Shugeng Gao, Qi Xue, Nan Sun, Jie He
Software Mentions: 6
Published: over 4 years ago

10.1128/mSphere.01261-20

Predominance of Atopobium vaginae at Midtrimester: a Potential Indicator of Preterm Birth Risk in a Nigerian Cohort
Cited by: 13
Author(s): Nkechi Martina Odogwu, Jun Chen, Chinedum Amara Onebunne, Patricio Jeraldo, Lu Yang, Stephen Johnson, Funmilola A. Ayeni, Marina Walther-Antonio, Oladapo Olayemi, Nicholas Chia, Akinyinka Omigbodun
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-92933-2

Exhaled volatilome analysis as a useful tool to discriminate asthma with other coexisting atopic diseases in women of childbearing age
Cited by: 6
Author(s): Rosa Alba Sola Martínez, Gema Lozano‐Terol, Julia Gallego‐Jara, Eva Morales, Esther Cantero‐Cano, Manuel Rolandi Sánchez-Solís, Luis García‐Marcos, Pedro Jiménez‐Guerrero, José Antonio Noguera-Velasco, Manuel Cánovas Díaz, Teresa De Diego
Software Mentions: 6
Published: over 3 years ago

10.3389/fped.2021.719352

Risk Identification of Bronchopulmonary Dysplasia in Premature Infants Based on Machine Learning
Cited by: 9
Author(s): Jia Lei, Tiankai Sun, Yongjiang Jiang, Ping Wu, Jinjian Fu, Tao Zhang, Eric McGrath
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-86735-9

Machine learning is the key to diagnose COVID-19: a proof-of-concept study
Cited by: 17
Author(s): Cédric Gangloff, Sonia Rafi, Guillaume Bouzillé, Louis Soulat, Marc Cuggia
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-81506-y

Deep learning predicts postsurgical recurrence of hepatocellular carcinoma from digital histopathologic images
Cited by: 25
Author(s): Rikiya Yamashita, Long Jin, Atif Saleem, Daniel L. Rubin, Jeanne Shen
Software Mentions: 6
Published: almost 4 years ago

10.3389/fpsyg.2018.00830

Short Forms of Wechsler Scales Assessing the Intellectually Gifted Children Using Simulation Data
Cited by: 17
Author(s): Alexandre Aubry, Béatrice Bourdin
Software Mentions: 6
Published: over 6 years ago

10.1038/s42003-020-0863-y

A miRNA-based diagnostic model predicts resectable lung cancer in humans with high accuracy
Cited by: 62
Author(s): Keisuke Asakura, Tsukasa Kadota, Juntaro Matsuzaki, Yukihiro Yoshida, Yusuke Yamamoto, Kazuo Nakagawa, Satoko Takizawa, Yasumichi Aoki, Eiji Nakamura, Junichiro Miura, Hiromi Sanada, Ken Kato, Shun Watanabe, Takahiro Ochiya
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-020-70703-w

Peripheral serum metabolomic profiles inform central cognitive impairment
Cited by: 21
Author(s): Jingye Wang, Runmin Wei, Guoxiang Xie, Matthias Arnold, Alexandra Kueider‐Paisley, Gregory Louie, Siamak Mahmoudian Dehkordi, Colette Blach, Rebecca Baillie, Xianlin Han, Philip L. De Jager, David A. Bennett, Rima Kaddurah‐Daouk, Jia Wang
Software Mentions: 6
Published: over 4 years ago

10.1038/s42003-019-0572-6

pathCHEMO, a generalizable computational framework uncovers molecular pathways of chemoresistance in lung adenocarcinoma
Cited by: 7
Author(s): Nusrat J Epsi, Sukanya Panja, Sharon R. Pine, Antonina Mitrofanova
Software Mentions: 6
Published: about 5 years ago

10.3390/genes12060898

A Literature-Derived Knowledge Graph Augments the Interpretation of Single Cell RNA-seq Datasets
Cited by: 4
Author(s): Deeksha Doddahonnaiah, Patrick Lenehan, Travis Hughes, David Zemmour, Enrique Garcia-Rivera, A J Venkatakrishnan, Ramakrishna Chilaka, Apoorv Khare, Akhil Kasaraneni, Abhinav Garg, Akash Anand, Rakesh Barve, Viswanathan Thiagarajan, Venky Soundararajan
Software Mentions: 6
Published: over 3 years ago

10.3390/genes12091339

Integrated Bioinformatics Analysis Reveals Marker Genes and Potential Therapeutic Targets for Pulmonary Arterial Hypertension
Cited by: 8
Author(s): Aoqi Li, Jin He, Zhe Zhang, Shuhui Jiang, Yun Gao, Yuchun Pan, Huanan Wang, Lenan Zhuang
Software Mentions: 6
Published: about 3 years ago

10.1186/s13073-021-00844-8

The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries
Cited by: 21
Author(s): Caroline Young, Henry M. Wood, Ramakrishnan Ayloor Seshadri, Pham Van Nang, Carlos Vaccaro, Luis Contreras Melendez, Mayilvahanan Bose, Mai Van Doi, Tamara Alejandra Piñero, Camilo Tapia Valladares, Julieta Argüero, Alba Fuentes Balaguer, Kelsey N. Thompson, Yan Yan, Curtis Huttenhower, Philip Quirke
Software Mentions: 6
Published: almost 4 years ago

10.3390/healthcare9030317

Automatic Evaluation of Heart Condition According to the Sounds Emitted and Implementing Six Classification Methods
Cited by: 5
Author(s): Manuel A. Soto-Murillo, Jorge I. Galván-Tejada, Carlos E. Galván-Tejada, José M. Celaya-Padilla, Huizilopoztli Luna-García, Rafael Magallanes‐Quintanar, Tania A. Gutiérrez-García, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: over 3 years ago

10.1186/s13046-020-01739-z

LncRNA MYLK-AS1 facilitates tumor progression and angiogenesis by targeting miR-424-5p/E2F7 axis and activating VEGFR-2 signaling pathway in hepatocellular carcinoma
Cited by: 72
Author(s): Fei Teng, Juxiang Zhang, Qimeng Chang, Xubo Wu, Wei‐Guo Tang, Jianfa Wang, Jin-Feng Feng, Ziping Zhang, Zhiqiu Hu
Software Mentions: 6
Published: about 4 years ago

10.1002/hbm.24554

Detection of mild cognitive impairment in a community‐dwelling population using quantitative, multiparametric MRI‐based classification
Cited by: 6
Author(s): Mark J. R. J. Bouts, Jeroen van der Grond, Meike W. Vernooij, Marisa Koini, Tijn M. Schouten, Frank de Vos, Rogier A. Feis, Lotte G.M. Cremers, Anita Lechner, Reinhold Schmidt, Mark de Rooij, Wiro J. Niessen, M. Arfan Ikram, Serge A.R.B. Rombouts
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-019-0464-9

High throughput proteomics identifies a high-accuracy 11 plasma protein biomarker signature for ovarian cancer
Cited by: 73
Author(s): Stefan Enroth, Malin Berggrund, Maria Lycke, John Broberg, Martin Lundberg, Erika Assarsson, Matts Olovsson, Karin Stålberg, Karin Sundfeldt, Ulf Gyllensten
Software Mentions: 5
Published: over 5 years ago

10.1128/mBio.00765-21

Markers of Polyfunctional SARS-CoV-2 Antibodies in Convalescent Plasma
Cited by: 51
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: over 3 years ago

10.1016/j.ejro.2021.100377

Single shot zonal oblique multislice SE-EPI diffusion-weighted imaging with low to ultra-high b-values for the differentiation of benign and malignant vertebral spinal fractures
Cited by: 3
Author(s): Elisabeth Sartoretti, Sabine Sartoretti–Schefer, Luuk van Smoorenburg, Barbara Eichenberger, Árpád Schwenk, David Czell, Alex Alfieri, Andreas Gutzeit, Manoj Mannil, Christoph A. Binkert, Michael Wyss, Thomas Sartoretti
Software Mentions: 5
Published: almost 4 years ago

10.1111/jcmm.16799

Comprehensive characterization of pathological stage‐related genes of papillary thyroid cancer along with survival prediction
Cited by: 1
Author(s): Lei Xu, Liang Feng, Haiyan Li, Menglong Li, Yongmei Xie, Zhihui Li, Yanzhi Guo
Software Mentions: 5
Published: over 3 years ago

10.3389/fphar.2021.616529

Systematic Investigation of DNA Methylation Associated With Platinum Chemotherapy Resistance Across 13 Cancer Types
Cited by: 4
Author(s): Ruizheng Sun, Chao Du, Jiaxin Li, Yanhong Zhou, Xiong Wang, Juanjuan Xiang, Jiheng Liu, Zhifeng Xiao, Fang Li, Li Zheng
Software Mentions: 5
Published: over 3 years ago

10.15252/emmm.201404874

Non‐invasive prognostic protein biomarker signatures associated with colorectal cancer
Cited by: 42
Author(s): Silvia Šurinová, Lenka Radová, Meena Choi, Josef Srovnal, Hermann Brenner, Olga Vitek, Marián Hajdúch, Ruedi Aebersold
Software Mentions: 5
Published: over 9 years ago

10.1111/jcmm.15517

Carboxypeptidase A6 was identified and validated as a novel potential biomarker for predicting the occurrence of active ulcerative colitis
Cited by: 3
Author(s): Haizhou Wang, Meng Zhang, Mengna Zhang, Fan Wang, Jing Liu, Qiu Zhao
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-021-89969-9

Data-science based analysis of perceptual spaces of odors in olfactory loss
Cited by: 2
Author(s): Jörn Lötsch, Alfred Ultsch, Antje Hähner, Vivien Willgeroth, Moustafa Bensafi, Andrea Zaliani, Thomas Hummel
Software Mentions: 5
Published: over 3 years ago

10.1186/2197-425X-2-10

Reliability of the nitrogen washin-washout technique to assess end-expiratory lung volume at variable PEEP and tidal volumes
Cited by: 10
Author(s): Jean-Christophe Richard, Céline Pouzot, Alfredo Pinzón, J. S. Torres González, Maciej Orkisz, B. Neyran, Marcela Hernández Hoyos, F. Lávenne, Claude Guérin
Software Mentions: 5
Published: over 10 years ago

10.1128/mBio.00180-20

Systemic Inflammatory Mediators Are Effective Biomarkers for Predicting Adverse Outcomes in Clostridioides difficile Infection
Cited by: 16
Author(s): Michael G. Dieterle, Rosemary Putler, D. Alexander Perry, Anitha Menon, Lisa Abernathy-Close, Naomi Perlman, Aline Penkevich, Alex Standke, Micah Keidan, Kimberly C. Vendrov, Ingrid L. Bergin, Vincent B. Young, Krishna Rao
Software Mentions: 5
Published: over 4 years ago

10.1093/hmg/ddz043

PAX7 target gene repression is a superior FSHD biomarker than DUX4 target gene activation, associating with pathological severity and identifying FSHD at the single-cell level
Cited by: 39
Author(s): Christopher R. S. Banerji, Peter S. Zammit
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-89148-w

Dilute pilocarpine test for diagnosis of Adie’s tonic pupil
Cited by: 3
Author(s): Yung Ju Yoo, Jeong Min Hwang, Hee Kyung Yang
Software Mentions: 5
Published: over 3 years ago

10.1002/ece3.7226

Analysing detection gaps in acoustic telemetry data to infer differential movement patterns in fish
Cited by: 10
Author(s): Michael Williamson, Emma Tebbs, Terence P. Dawson, David J. Curnick, Francesco Ferretti, Aaron B. Carlisle, Taylor K. Chapple, Robert J. Schallert, David Tickler, Xavier A. Harrison, Barbara A. Block, David Jacoby
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41392-020-00221-8

An individualized immune signature of pretreatment biopsies predicts pathological complete response to neoadjuvant chemoradiotherapy and outcomes in patients with esophageal squamous cell carcinoma
Cited by: 17
Author(s): Chaoqi Zhang, Guochao Zhang, Nan Sun, Zhen Zhang, Liyan Xue, Zhihui Zhang, Haijun Yang, Yuejun Luo, Xiaoli Zheng, Yonglei Zhang, Yufen Yuan, Ruixue Lei, Zhaoyang Yang, Bo Zheng, Le Wang, Yun Cao, Feng Wang, Sihui Wang, Shugeng Gao, Qi Xue, Yi Zhang, Jie He
Software Mentions: 5
Published: about 4 years ago

10.1016/j.ebiom.2020.102899

Development and validation of the first consensus gene-expression signature of operational tolerance in kidney transplantation, incorporating adjustment for immunosuppressive drug therapy
Cited by: 15
Author(s): Sofia Christakoudi, Manohursingh Runglall, Paula Mobillo, Irene Rebollo‐Mesa, Tjir Li Tsui, Estefanía Nova-Lamperti, Catharine Taube, S. Norris, Yogesh Kamra, Rachel Hilton, Titus Augustine, Sunil Bhandari, Richard J. Baker, David Berglund, Sue Carr, David Game, Siân Griffin, Philip A. Kalra, Robert Lewis, Patrick B. Mark, Stephen D. Marks, Iain MacPhee, William McKane, Markus Mohaupt, Estela Paz‐Artal, Sui Phin Kon, Daniel Serón, Manish D. Sinha, Beatriz Tucker, Ondřej Viklický, Daniel Ståhl, Robert I. Lechler, Graham Lord, Maria P. Hernandez-Fuentes
Software Mentions: 5
Published: over 4 years ago

10.3390/jcm8010050

Efficacy of Integrating a Novel 16-Gene Biomarker Panel and Intelligence Classifiers for Differential Diagnosis of Rheumatoid Arthritis and Osteoarthritis
Cited by: 24
Author(s): Nguyen Phuoc Long, Seongoh Park, Nguyễn Hoàng Anh, Jung Eun Min, Sang Jun Yoon, Hyung Min Kim, Tran Diem Nghi, Dong Kyu Lim, Jeong Hill Park, Jong-Tae Lim, Sung Won Kwon
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13054-021-03609-2

Accuracy of pancreatic stone protein for the diagnosis of infection in hospitalized adults: a systematic review and individual patient level meta-analysis
Cited by: 18
Author(s): J Prazák, Irina Irincheeva, Martin J. Llewelyn, Daiana Stolz, Luis García de Guadiana Romualdo, Rolf Graf, Theresia Reding, Holger Jan Klein, Philippe Eggimann, Yok-Ai Que
Software Mentions: 5
Published: over 3 years ago

10.1186/s13148-021-01018-4

Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects
Cited by: 44
Author(s): Colette Christiansen, Juan Castillo-Fernandez, Arce Domingo‐Relloso, Wei Zhao, Julia S. El-Sayed Moustafa, Pei-Chien Tsai, Jane Maddock, Karin Haack, Shelley A. Cole, Sharon L.R. Kardia, Mariam Molokhia, Matthew Suderman, Chris Power, Caroline L Relton, Andrew Wong, Diana Kuh, Alissa Goodman, Kerrin S. Small, Jennifer A. Smith, María Téllez-Plaza, Ana Navas-Acién, George B. Ploubidis, Rebecca Hardy, Jordana T. Bell
Software Mentions: 5
Published: almost 4 years ago

10.1038/cr.2017.121

5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic biomarkers for human cancers
Cited by: 229
Author(s): Wenshuai Li, Xu Zhang, Xingyu Lu, Lei You, Yanqun Song, Zhongguang Luo, Jun Zhang, Ji Nie, Wanwei Zheng, Diannan Xu, Yaping Wang, Yuanqiang Dong, Shulin Yu, Jun Hong, Jianping Shi, Hankun Hao, Fen Luo, Lingyang Hua, Peng Wang, Xiaoping Qian, Fang Yuan, Lian-Huan Wei, Ming Cui, Taiping Zhang, Quan Liao, Menghua Dai, Ziwen Liu, Ge Chen, Katherine Meckel, Sarbani Adhikari, Guifang Jia, Marc Bissonnette, Xin‐Xiang Zhang, Yupei Zhao, Wei Zhang, Chuan He, Jie Liu
Software Mentions: 5
Published: about 7 years ago

10.1186/s13036-018-0112-9

Machine learning analysis of microbial flow cytometry data from nanoparticles, antibiotics and carbon sources perturbed anaerobic microbiomes
Cited by: 10
Author(s): Abhishek S. Dhoble, Pratik Lahiri, Kaustubh Bhalerao
Software Mentions: 5
Published: about 6 years ago

10.1186/s13326-018-0189-6

Using predicate and provenance information from a knowledge graph for drug efficacy screening
Cited by: 16
Author(s): Wytze J. Vlietstra, Rein Vos, Anneke M. Sijbers, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 5
Published: about 6 years ago

10.7150/thno.55209

<i>Candida albicans</i> disorder is associated with gastric carcinogenesis
Cited by: 48
Author(s): Min Zhong, Yubo Xiong, Jiabao Zhao, Zhi Gao, Jianchao Ma, Zhengxin Wu, Yongxi Song, Xuehui Hong
Software Mentions: 5
Published: almost 4 years ago

10.1534/g3.118.200563

Comparative Genomics Approaches Accurately Predict Deleterious Variants in Plants
Cited by: 32
Author(s): Thomas J. Y. Kono, Lei Li, Ching-Hua Shih, Paul Hoffman, Peter L. Morrell, Justin C. Fay
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-61496-z

Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma
Cited by: 16
Author(s): Manousos Makridakis, Georgia Kontostathi, Eleni Petra, Rafael Stroggilos, Vasiliki Lygirou, Szymon K. Filip, Flore Duranton, Harald Mischak, Àngel Argilés, Jérôme Zoidakis, Antonia Vlahou
Software Mentions: 5
Published: over 4 years ago

10.7150/jca.50443

Six Novel Biomarkers for Diagnosis and Prognosis of Esophageal squamous cell carcinoma: validated by scRNA-seq and qPCR
Cited by: 24
Author(s): Liuhai Zheng, Linzhi Li, Jun Xie, Hai Jin, Nianyong Zhu
Software Mentions: 5
Published: almost 4 years ago

10.3390/diagnostics10040188

Profiling of Circulating microRNAs in Prostate Cancer Reveals Diagnostic Biomarker Potential
Cited by: 21
Author(s): Jacob Fredsøe, Anne Rasmussen, Peter Mouritzen, Marianne Bjerre, Peter Busch Østergren, Mikkel Fode, Michael Borre, Karina D. Sørensen
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-66806-z

CD96, a new immune checkpoint, correlates with immune profile and clinical outcome of glioma
Cited by: 26
Author(s): Fangkun Liu, Jing Huang, Fengjiao He, Xiaodong Ma, Fan Fan, Ming Meng, Zhuo Yang, Jintao Zhang
Software Mentions: 5
Published: over 4 years ago

10.1128/mSystems.00579-19

Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies
Cited by: 48
Author(s): Cecilia Noecker, Hsuan-Chao Chiu, Christopher A. McNally, Elhanan Borenstein
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-69552-4

Geographic variation in cardiometabolic risk factor prevalence explained by area-level disadvantage in the Illawarra-Shoalhaven region of the NSW, Australia
Cited by: 0
Author(s): Renin Toms, Darren J Mayne, Xiaoqi Feng, Andrew D Bonney
Software Mentions: 5
Published: over 4 years ago

10.3390/molecules26051357

The Influence of Smoking Status on Exhaled Breath Profiles in Asthma and COPD Patients
Cited by: 6
Author(s): Stefania Principe, Job J.M.H. van Bragt, Cristina Longo, Rob de Vries, Peter J. Sterk, Nicola Scichilone, Susanne Vijverberg, Anke‐Hilse Maitland‐van der Zee
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2021.670138

Integrated Analysis of ceRNA Network Reveals Prognostic and Metastasis Associated Biomarkers in Breast Cancer
Cited by: 8
Author(s): Qian Da, Qinghui Zheng, Danping Wu, Buyun Ye, Yang‐Yang Qian, Tao Zhou, Jie Qiu, Xuli Meng
Software Mentions: 5
Published: over 3 years ago

10.18632/aging.103980

A predictive model for the severity of COVID-19 in elderly patients
Cited by: 16
Author(s): Furong Zeng, Guangtong Deng, Yanhui Cui, Yan Zhang, Minhui Dai, Lingli Chen, Duoduo Han, Wen Li, Kehua Guo, Xiang Chen, Min Shen, Pinhua Pan
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0232242

Prediction of attempted suicide in men and women with crack-cocaine use disorder in Brazil
Cited by: 10
Author(s): Vinícius Serafini Roglio, Eduardo Nunes Borges, Francisco Diego Rabelo‐da‐Ponte, Felipe Ornell, Juliana Nichterwitz Scherer, Jaqueline Bohrer Schuch, Ives Cavalcante Passos, Breno Sanvicente‐Vieira, Rodrigo Grassi‐Oliveira, Lísia von Diemen, Flávio Pechansky, Félix Henrique Paim Kessler
Software Mentions: 5
Published: over 4 years ago

10.3390/ani11061602

TeamMate: A Longitudinal Study of New Zealand Working Farm Dogs. III. Factors Affecting the Risk of Dogs Being Lost from the Workforce
Cited by: 1
Author(s): Katja Elisabeth Isaksen, Lori Linney, Helen Williamson, Norman Espinosa, Nick J. Cave, Naomi Cogger
Software Mentions: 5
Published: over 3 years ago

10.1155/2021/5553811

Identification of Potential Biomarkers Associated with Acute Myocardial Infarction by Weighted Gene Coexpression Network Analysis
Cited by: 12
Author(s): Yan Wang, Xiangyang Zhang, Min Duan, Chenguang Zhang, Ke Wang, Lili Feng, Linlin Song, Sheng Xi Wu, Xuyan Chen
Software Mentions: 5
Published: about 3 years ago

10.1186/s12872-021-01961-3

Distinguishing cardiac myxomas from cardiac thrombi by a radiomics signature based on cardiovascular contrast-enhanced computed tomography images
Cited by: 3
Author(s): Wen-Lei Qian, Jiang Yu, Xi Liu, Yingkun Guo, Yuan Li, Xin Tang, Zhigang Yang
Software Mentions: 5
Published: over 3 years ago

10.1002/2211-5463.12744

Fecal microbiota transplantation results in bacterial strain displacement in patients with inflammatory bowel diseases
Cited by: 13
Author(s): Manli Zou, Zhuye Jie, Bota Cui, Honggang Wang, Qiang Feng, Yuanqiang Zou, Xiuqing Zhang, Huanming Yang, Jian Wang, Faming Zhang, Huijue Jia
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12872-021-02206-z

Exploring the diagnostic effectiveness for myocardial ischaemia based on CCTA myocardial texture features
Cited by: 3
Author(s): Hengyu Zhao, Yuan Lv, Zhishang Chen, Yuting Liao, Jiangzhou Lin
Software Mentions: 5
Published: about 3 years ago

10.3389/fonc.2018.00674

Identification of Serum MicroRNAs as Novel Biomarkers in Esophageal Squamous Cell Carcinoma Using Feature Selection Algorithms
Cited by: 28
Author(s): Deqiang Zheng, Yuanjie Ding, Qing Ma, Lei Zhao, Xudong Guo, Yi Shen, Yan He, Wenqiang Wei, Fen Liu
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2020.541849

Radiomics Nomogram of DCE-MRI for the Prediction of Axillary Lymph Node Metastasis in Breast Cancer
Cited by: 18
Author(s): Ning Mao, Yi Dai, Fan Lin, Heng Ma, Shaofeng Duan, Haizhu Xie, Wenlei Zhao, Nan Hong
Software Mentions: 5
Published: about 4 years ago

10.1186/s12964-019-0492-6

Comprehensive profiling identifies a novel signature with robust predictive value and reveals the potential drug resistance mechanism in glioma
Cited by: 18
Author(s): Fan Zeng, Kuanyu Wang, Xiu Liu, Zheng Zhao
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2020.580809

The Growth Trend Predictions in Pulmonary Ground Glass Nodules Based on Radiomic CT Features
Cited by: 8
Author(s): Chen Gao, Jing Yan, Yifan Luo, Linyu Wu, Peipei Pang, Ping Xiang, Maosheng Xu
Software Mentions: 5
Published: about 4 years ago

10.1136/bmj.l1945

Diagnosis of obstructive coronary artery disease using computed tomography angiography in patients with stable chest pain depending on clinical probability and in clinically important subgroups: meta-analysis of individual patient data
Cited by: 85
Author(s): Robert Haase, Peter Schlattmann, Pascal Guéret, Daniele Andreini, Gianluca Pontone, Hatem Alkadhi, Jörg Hausleiter, Mario J. García, Sebastian Leschka, Willem B. Meijboom, Elke Zimmermann, Bernhard Gerber, U. Joseph Schoepf, Abbas Arjmand Shabestari, Bjarne Linde Nørgaard, Matthijs F.L. Meijs, Akira Sato, Kristian Altern Øvrehus, Axel Cosmus Pyndt Diederichsen, Shona M.M. Jenkins, Juhani Knuuti, Ashraf Hamdan, Bjørn Halvorsen, Vladimir Mendoza-Rodríguez, Carlos Eduardo Rochitte, Johannes Rixe, Yung Liang Wan, C. Langer, Nuno Bettencourt, Eugenio Martuscelli, Saïd Ghostine, Ronny R. Buechel, Konstantin Nikolaou, Hans Mickley, Lin Yang, Zhaqoi Zhang, Marcus Y Chen, David A. Halon, Matthias Rief, Kai Sun, Beatrice Hirt-Moch, Hiroyuki Niinuma, Roy Marcus, Simone Muraglia, Réda Jakamy, Benjamin J.W. Chow, Philipp A. Kaufmann, Jean‐Claude Tardif, César Higa Nomura, Klaus F. Kofoed, Jean Pierre Laissy, Armin Arbab‐Zadeh, Kakuya Kitagawa, Roger J. Laham, Masahiro Jinzaki, John Hoe, Frank J. Rybicki, Arthur J. Scholte, Narinder Paul, Swee Yaw Tan, Kunihiro Yoshioka, Robert Röhle, Georg M. Schuetz, Sabine Schueler, Maria H. Coenen, Viktoria Wieske, Stephan Achenbach, Matthew J. Budoff, Michael Laule, David E. Newby, Marc Dewey
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0257251

Potential biomarkers of major depression diagnosis and chronicity
Cited by: 10
Author(s): Ana Cecília de Menezes Galvão, Raíssa Nóbrega de Almeida, Geovan Menezes de Sousa Júnior, Mário André Leocádio-Miguel, Fernanda Palhano-Fontes, Dráulio Barros de Araújo, Bruno Lobão-Soares, João Paulo Maia‐de‐Oliveira, Emerson Arcoverde Nunes, Jaime Eduardo Cecílio Hallak, Jerome Sarris, Nicole Leite Galvão-Coelho
Software Mentions: 5
Published: about 3 years ago

10.1111/cpr.13117

Prognostic and predictive role of a metabolic rate‐limiting enzyme signature in hepatocellular carcinoma
Cited by: 9
Author(s): Zhangding Wang, Yao Fu, Anliang Xia, Chen Chen, Jiamu Qu, Guifang Xu, Xiaoping Zou, Qiang Wang, Shouyu Wang
Software Mentions: 5
Published: about 3 years ago

10.1186/s12967-021-02716-6

The potential role of chemotaxis and the complement system in the formation and progression of thoracic aortic aneurysms inferred from the weighted gene coexpression network analysis
Cited by: 5
Author(s): Chuxiang Lei, Dan Yang, Wenlin Chen, Haoxuan Kan, Feifei Xu, Hui Zhang, Wei Wang, Lei Ji, Yuehong Zheng
Software Mentions: 5
Published: almost 4 years ago

10.4269/ajtmh.19-0968

Use of Typhoid Vi-Polysaccharide Vaccine as a Vaccine Probe to Delineate Clinical Criteria for Typhoid Fever
Cited by: 0
Author(s): Tarikul Islam, Justin Im, Faisal Ahmmed, Deok Ryun Kim, Ashraful Islam Khan, Khalequ Zaman, Mohammad Ali, Florian Marks, Firdausi Qadri, Jerome H. Kim, John D. Clemens
Software Mentions: 5
Published: over 4 years ago

10.3390/jpm10040271

Identification of Metabolic Biomarkers in Relation to Methotrexate Response in Early Rheumatoid Arthritis
Cited by: 13
Author(s): Helen R. Gosselt, Ittai B. Muller, Gerrit Jansen, Michel van Weeghel, Frédéric M. Vaz, Johanna M. W. Hazes, Sandra G. Heil, Robert de Jonge
Software Mentions: 5
Published: almost 4 years ago

10.18632/oncotarget.26032

Comprehensive analysis identifying aberrant DNA methylation in rectal mucosa from ulcerative colitis patients with neoplasia
Cited by: 6
Author(s): Yuji Toiyama, Yoshinaga Okugawa, Satoru Kondo, Yoshiki Okita, Toshimitsu Araki, Kurando Kusunoki, Motoi Uchino, Hiroki Ikeuchi, Seiichi Hirota, Akira Mitsui, Kenji Takehana, Tsutomu Umezawa, Masato Kusunoki
Software Mentions: 5
Published: about 6 years ago

10.1186/s12890-021-01391-z

Development and validation of a nomogram to predict pulmonary function and the presence of chronic obstructive pulmonary disease in a Korean population
Cited by: 2
Author(s): Sang Chul Lee, Chansik An, Jongha Yoo, Sungho Park, Donggyo Shin, Chang Hoon Han
Software Mentions: 5
Published: almost 4 years ago

10.1164/rccm.202003-0510OC

Whole-Blood RNA Profiles Associated with Pulmonary Arterial Hypertension and Clinical Outcome
Cited by: 36
Author(s): Christopher J. Rhodes, Pablo Otero-Núñez, John Wharton, Emilia M. Swietlik, Sokratis Kariotis, Lars Harbaum, Mark J. Dunning, Jason M. Elinoff, Niamh Errington, A. A. Roger Thompson, James Iremonger, J. Gerry Coghlan, Paul A. Corris, Luke Howard, David G. Kiely, Colin Church, Joanna Pepke‐Zaba, Mark Toshner, Stephen J. Wort, Ankit A. Desai, Marc Humbert, William C. Nichols, Laura Southgate, David‐Alexandre Trégouët, Richard Trembath, Inga Prokopenko, Stefan Gräf, Nicholas W. Morrell, Dennis Wang, Allan Lawrie, Martin R. Wilkins
Software Mentions: 5
Published: over 4 years ago

10.3390/cancers13112592

Identification of Candidate Protein Biomarkers for CIN2+ Lesions from Self-Sampled, Dried Cervico–Vaginal Fluid Using LC-MS/MS
Cited by: 6
Author(s): Ariadna Lara Gutiérrez, Julia Hedlund Lindberg, Ganna Shevchenko, Inger Gustavsson, Jonas Bergquist, Ulf Gyllensten, Stefan Enroth
Software Mentions: 5
Published: over 3 years ago

Projects: cran: pROC

Papers Mentioning pROC 1,740