cran: mem | Projects | Ecosyste.ms: Papers

10.15252/emmm.201809443

<scp>PDX</scp> models recapitulate the genetic and epigenetic landscape of pediatric T‐cell leukemia
Cited by: 35
Author(s): Paulina Richter-Pechańska, Joachim Kunz, Beat Bornhäuser, Caroline Von Knebel Doeberitz, Tobias Rausch, Büşra Erarslan-Uysal, Yassen Assenov, Viktoras Frismantas, Blerim Marovca, Sebastian M. Waszak, Martin Zimmermann, Julia Seemann, Margit Happich, Martin Stanulla, Martin Schrappe, Gunnar Cario, Gabriele Escherich, Kseniya Bakharevich, Renate Kirschner-Schwabe, Cornelia Eckert, Martina U. Muckenthaler, Jan O. Korbel, Jean‐Pierre Bourquin, Andreas E. Kulozik
Software Mentions: 12
Published: about 6 years ago

10.15252/embj.2020106388

Unraveling the features of somatic transposition in the Drosophila intestine
Cited by: 25
Author(s): Katarzyna Siudeja, Marius van den Beek, Nick Riddiford, Benjamin Boumard, Annabelle Wurmser, Marine Stefanutti, Sonia Lameiras, Allison J. Bardin
Software Mentions: 12
Published: over 3 years ago

10.1111/tpj.14784

Segmental duplications are hot spots of copy number variants affecting barley gene content
Cited by: 4
Author(s): Gianluca Bretani, Laura Rossini, Chiara Ferrandi, Joanne Russell, Robbie Waugh, Benjamin Kilian, Paolo Bagnaresi, Luigi Cattivelli, Agostino Fricano
Software Mentions: 11
Published: over 4 years ago

10.1111/1755-0998.13280

The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic
Cited by: 13
Author(s): Michael Nowak, Siri Birkeland, Terezie Mandáková, Rimjhim Roy Choudhury, Xi Guo, Lovisa Gustafsson, Abel Gizaw, Audun Schrøder-Nielsen, Marco Fracassetti, Anne K. Brysting, Loren H. Rieseberg, Tanja Slotte, Christian Parisod, Martin A. Lysak, Christian Brochmann
Software Mentions: 8
Published: about 4 years ago

10.1002/advs.201901819

Whole‐Genome Promoter Profiling of Plasma DNA Exhibits Diagnostic Value for Placenta‐Origin Pregnancy Complications
Cited by: 25
Author(s): Zhi-Wei Guo, Fang Yang, Jun Zhang, Zhigang Zhang, Kun Li, Qi Tian, Hongyan Hou, Chenyang Xu, Qiping Lu, Zhonglu Ren, Xiaoxue Yang, Zenglu Lv, Ke Wang, Xinping Yang, Yanni Wu, Xiaobo Yang
Software Mentions: 7
Published: almost 5 years ago

10.1002/humu.23772

eDiVA—Classification and prioritization of pathogenic variants for clinical diagnostics
Cited by: 15
Author(s): Mattia Bosio, Oliver Drechsel, Rubayte Rahman, Francesc Muyas, Raquel Rabionet, Daniela Bezdan, Laura Domènech, Hyun‐Gyu Hor, Jean‐Jacques Schott, Francina Munell, Roger Colobran, Alfons Macaya, Xavier Estivill, Stephan Ossowski
Software Mentions: 7
Published: over 5 years ago

10.1111/mec.15366

Genomic patterns in the widespread Eurasian lynx shaped by Late Quaternary climatic fluctuations and anthropogenic impacts
Cited by: 36
Author(s): María Lucena-Pérez, Elena Marmesat, Daniel Kleinman‐Ruiz, Begoña Martínez‐Cruz, Karolina Wȩcek, Alexander P. Saveljev, Ivan V. Seryodkin, И. М. Охлопков, Mikhail G. Dvornikov, Jurijs Ozoliņš, Naranbaatar Galsandorj, Milan Paunović, Mirosław Ratkiewicz, Krzysztof Schmidt, José A. Godoy
Software Mentions: 7
Published: almost 5 years ago

10.1111/eva.12765

Combining population genomics and forward simulations to investigate stocking impacts: A case study of Muskellunge (Esox masquinongy) from the St. Lawrence River basin
Cited by: 14
Author(s): Quentin Rougemont, Anne Carrier, Jérémy Le Luyer, Anne‐Laure Ferchaud, John M. Farrell, Daniel Hatin, Philippe Brodeur, Louis Bernatchez
Software Mentions: 6
Published: almost 6 years ago

10.1002/1878-0261.12161

Comparative genomics reveals that loss of lunatic fringe (LFNG) promotes melanoma metastasis
Cited by: 19
Author(s): Martín Del Castillo Velasco-Herrera, Louise van der Weyden, Jérémie Nsengimana, Anneliese O. Speak, Marcela Sjöberg, D. Timothy Bishop, Göran Jönsson, Julia Newton-Bishop, David J. Adams
Software Mentions: 6
Published: almost 7 years ago

10.7554/eLife.34226

Gene family innovation, conservation and loss on the animal stem lineage
Cited by: 144
Author(s): Daniel J. Richter, Parinaz Fozouni, Michael B. Eisen, Nicole King
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-019-5806-y

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species
Cited by: 44
Author(s): Belinda Wright, Katherine A. Farquharson, Elspeth A. McLennan, Katherine Belov, Carolyn J. Hogg, Catherine E. Grueber
Software Mentions: 5
Published: over 5 years ago

10.1111/pbi.13483

The genome of Cleistogenes songorica provides a blueprint for functional dissection of dimorphic flower differentiation and drought adaptability
Cited by: 18
Author(s): Jiyu Zhang, Fan Wu, Yan Qi, Ulrik P. John, Mingshu Cao, Pao Xu, Zhengshe Zhang, Tiantian Ma, Xifang Zong, Jie Li, Ruijuan Liu, Yufei Zhang, Yufeng Zhao, Gisele Kanzana, Yunyun Lv, Nan Zhang, Germán Spangenberg, Yanrong Wang
Software Mentions: 5
Published: about 4 years ago

10.1002/ece3.5463

Impact of demography on linked selection in two outcrossing Brassicaceae species
Cited by: 9
Author(s): Tiina M. Mattila, Benjamin Laenen, Róbert Horváth, Tuomas Hämälä, Outi Savolainen, Tanja Slotte
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0121701

A Next Generation Semiconductor Based Sequencing Approach for the Identification of Meat Species in DNA Mixtures
Cited by: 58
Author(s): Francesca Bertolini, Marco Ciro Ghionda, Enrico D’Alessandro, Calogero Geraci, Vincenzo Chiofalo, Luca Fontanesi
Software Mentions: 4
Published: over 9 years ago

10.3390/molecules25184299

Impact of Cholesterol on the Stability of Monomeric and Dimeric Forms of the Translocator Protein TSPO: A Molecular Simulation Study
Cited by: 5
Author(s): Zeineb Si Chaib, Alessandro Marchetto, Klevia Dishnica, Paolo Carloni, Alejandro Giorgetti, Giulia Rossetti
Software Mentions: 4
Published: about 4 years ago

10.1186/s12920-015-0130-0

TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen
Cited by: 42
Author(s): Andrea Marion Marquard, Nicolai J. Birkbak, Cecilia Engel Thomas, Francesco Favero, Marcin Krzystanek, Céline Lefèbvre, Charles Ferté, Mariam Jamal‐Hanjani, Gareth A. Wilson, Seema Shafi, Charles Swanton, Fabrice André, Zoltán Szállási, Aron C. Eklund
Software Mentions: 4
Published: about 9 years ago

10.1002/humu.23674

Allele balance bias identifies systematic genotyping errors and false disease associations
Cited by: 17
Author(s): Francesc Muyas, Mattia Bosio, Anna Puig, Hana Sušak, Laura Domènech, Geòrgia Escaramís, Luís Zapata, German Demidov, Xavier Estivill, Raquel Rabionet, Stephan Ossowski
Software Mentions: 4
Published: about 6 years ago

10.1534/g3.118.200677

Genotype-by-Environment-by-Environment Interactions in the Saccharomyces cerevisiae Transcriptomic Response to Alcohols and Anaerobiosis
Cited by: 5
Author(s): Maria Sardi, Molly Krause, Justin Heilberger, Audrey P. Gasch
Software Mentions: 4
Published: almost 6 years ago

10.2807/1560-7917.ES.2019.24.12.1800042

Influenza surveillance: determining the epidemic threshold for influenza by using the Moving Epidemic Method (MEM), Montenegro, 2010/11 to 2017/18 influenza seasons
Cited by: 12
Author(s): Božidarka Rakočević, Anita Grgurević, Goran Trajković, Boban Mugoša, Sandra Šipetić Grujičić, Sanja Medenica, Olivera Bojovic, José Eugenio Lozano Alonso, Tomás Vega
Software Mentions: 3
Published: over 5 years ago

10.3389/fnins.2021.707828

Extended Visual Sequence Learning Leaves a Local Trace in the Spontaneous EEG
Cited by: 2
Author(s): Serena Ricci, Elisa Tatti, Aaron Nelson, Priya Panday, Henry Chen, Giulio Tononi, Chiara Cirelli, Maria Felice Ghilardi
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-016-2366-2

svclassify: a method to establish benchmark structural variant calls
Cited by: 96
Author(s): Hemang Parikh, Marghoob Mohiyuddin, Hugo Y. K. Lam, Hariharan Iyer, Desu Chen, M. R. Pratt, Gábor Bartha, Noah Spies, Wolfgang Losert, Justin M. Zook, Marc Salit
Software Mentions: 3
Published: almost 9 years ago

10.1002/ajp.23101

Maternal weight affects placental DNA methylation of genes involved in metabolic pathways in the common marmoset monkey ( Callithrix jacchus )
Cited by: 7
Author(s): Laren Narapareddy, Derek E. Wildman, Don Armstrong, Amy Weckle, Aleeca F. Bell, Crystal L. Patil, Suzette D. Tardif, Corinna N. Ross, Julienne N. Rutherford
Software Mentions: 3
Published: almost 5 years ago

10.2807/1560-7917.ES.2020.25.21.1900364

Transmissibility of influenza during the 21st-century epidemics, Spain, influenza seasons 2001/02 to 2017/18
Cited by: 7
Author(s): Laura Bravo, Concepción Delgado-Sanz, Jesús Oliva, Tomás Vega, José Lozano, Amparo Larrauri
Software Mentions: 2
Published: over 4 years ago

10.1016/j.cell.2019.02.012

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis
Cited by: 273
Author(s): Mia Petljak, Ludmil B. Alexandrov, Jonathan Brammeld, Stacey Price, David C. Wedge, Sebastian Großmann, Kevin J. Dawson, Young Seok Ju, Francesco Iorio, José M. C. Tubío, Ching Chiek Koh, Ilias Georgakopoulos-Soares, Bernardo Rodríguez-Martín, Burçak Otlu, Sarah O’Meara, Adam Butler, Andrew Menzies, Shriram G. Bhosle, Keiran Raine, David R. Jones, Jon W. Teague, Kathryn Beal, Calli Latimer, Laura P. O’Neill, Jorge Zamora, Elizabeth Anderson, Nikita Patel, Mark Maddison, Bee Ling Ng, Jennifer Graham, Mathew J. Garnett, Ultan McDermott, Serena Nik-Zainal, Peter J. Campbell, Michael R. Stratton
Software Mentions: 2
Published: over 5 years ago

10.15252/emmm.202013376

Bi‐allelic VPS16 variants limit HOPS/CORVET levels and cause a mucopolysaccharidosis‐like disease
Cited by: 14
Author(s): Kalliopi Sofou, Kolja Meier, Leslie E. Sanderson, Debora Kaminski, Laia Montoliu‐Gaya, Emma Samuelsson, Maria Blomqvist, Lotta Agholme, Jutta Gärtner, Chris Mühlhausen, Niklas Darín, Tahsin Stefan Barakat, Lars Schlotawa, Tjakko J. van Ham, Jorge Asin Cayuela, Fredrik Sterky
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/6630300

Six Novel ATM Gene Variants in Sri Lankan Patients with Ataxia Telangiectasia
Cited by: 2
Author(s): Dineshani Hettiarachchi, Hetalkumar Panchal, Sajeewani Pathirana, Pyara Rathnayaka, Anuruddha Padeniya, Poh-San Lai, Vajira H. W. Dissanayake
Software Mentions: 2
Published: almost 4 years ago

10.2807/1560-7917.ES.2020.25.44.1900419

The experience of point-of-care testing for influenza in Scotland in 2017/18 and 2018/19 – no gain without pain
Cited by: 4
Author(s): Elizabeth Dickson, Diogo F P Marques, Sandra Currie, Annette Little, Kirsty Mangin, Michael J. Coyne, Arlene Reynolds, Jim McMenamin, David Yirrell
Software Mentions: 2
Published: about 4 years ago

10.15252/msb.202010089

Collective colony growth is optimized by branching pattern formation in Pseudomonas aeruginosa
Cited by: 14
Author(s): Nan Luo, Shangying Wang, Jia Grace Lu, Xiaoyi Ouyang, You Li
Software Mentions: 2
Published: over 3 years ago

Ecosyste.ms: Papers

Projects: cran: mem

Papers Mentioning mem 28