Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/embj.2020106388

https://doi.org/10.15252/embj.2020106388

Cited by: 25
Author(s): Katarzyna Siudeja, Marius van den Beek, Nick Riddiford, Benjamin Boumard, Annabelle Wurmser, Marine Stefanutti, Sonia Lameiras, Allison J. Bardin
Published: about 3 years ago

Software Mentions 12

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

cran: mem

The Moving Epidemic Method
Papers that mentioned: 28

cran: meme

Create Meme
Papers that mentioned: 31

cran: SAM

Sparse Additive Modelling
Papers that mentioned: 4,566

pypi: bwa

Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989

pypi: guppy

Guppy-PE -- A Python Programming Environment
Papers that mentioned: 53

pypi: ipython

IPython: Productive Interactive Computing
Papers that mentioned: 40

pypi: mappy

Minimap2 python binding
Papers that mentioned: 3

pypi: mem

memorize tool
Papers that mentioned: 28

pypi: meme

Use the command line to generate memes on memegenerator.co
Papers that mentioned: 31

pypi: pybedtools

Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48

pypi: readtagger

Tags reads in a BAM file based on other BAM files.
Papers that mentioned: 1