Projects: cran: lme4
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/lme4
Linear Mixed-Effects Models using 'Eigen' and S4
126 versions
Latest release: about 3 years ago
479 dependent packages
474,997 downloads last month
Enhanced Analysis
Educational Contributors:
ross.boylan@ucsf.edu
vincent@stat.columbia.edu
Repository Activity:
Repository Owner:
`lme4` R package authors (organization)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
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+40
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2 contributors with educational email addresses -
+8
Science terms in README
4 scientific terms found in README
Very Likely Science (100)
Papers Mentioning lme4 9,267
10.3389/fmicb.2016.01128
Hospital Effluents Are One of Several Sources of Metal, Antibiotic Resistance Genes, and Bacterial Markers Disseminated in Sub-Saharan Urban RiversCited by: 91
Author(s): Amandine Laffite, Pitchouna I. Kilunga, John M. Kayembe, Naresh Devarajan, Crispin K. Mulaji, Gaston Giuliani, Vera I. Slaveykova, John Poté
Software Mentions: 1
Published: about 10 years ago
10.1038/s41598-017-12483-4
Split dosing of artemisinins does not improve antimalarial therapeutic efficacyCited by: 13
Author(s): Nicholas J. White, James A Watson, Elizabeth A. Ashley
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0198076
Vervet monkey (Chlorocebus pygerythrus) behavior in a multi-destination route: Evidence for planning ahead when heuristics failCited by: 11
Author(s): Julie A. Teichroeb, Eve A Smeltzer
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-020-80185-5
Alligator presence influences colony site selection of long-legged wading birds through large scale facilitative nest protector relationshipCited by: 2
Author(s): Wray Gabel, Peter C. Frederick, Jabi Zabala
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2016.00848
A Novel Treatment Protects Chlorella at Commercial Scale from the Predatory Bacterium Vampirovibrio chlorellavorusCited by: 43
Author(s): Eneko Ganuza, Charles E. Sellers, Braden W. Bennett, E.M. Lyons, Laura T. Carney
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0150408
Extensive Acclimation in Ectotherms Conceals Interspecific Variation in Thermal Tolerance LimitsCited by: 46
Author(s): Anna F. V. Pintor, Lin Schwarzkopf, Andrew K. Krockenberger
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-017-13179-5
Cognition in the field: comparison of reversal learning performance in captive and wild passerinesCited by: 58
Author(s): Maxime Cauchoix, E. Hermer, Alexis S. Chaine, Julie Morand‐Ferron
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.anbehav.2015.07.002
Developmental and familial predictors of adult cognitive traits in the European starlingCited by: 24
Author(s): Daniel Nettle, Clare Andrews, Pat Monaghan, Ben O. Brilot, T. Bedford, Robert Gillespie, Melissa Bateson
Software Mentions: 1
Published: about 11 years ago
10.1186/s12864-015-2049-4
Targeted association mapping demonstrating the complex molecular genetics of fatty acid formation in soybeanCited by: 56
Author(s): Yinghui Li, Jochen C. Reif, Yue Ma, Huilong Hong, Zhangxiong Liu, Ru-Zhen Chang, Lijuan Qiu
Software Mentions: 1
Published: almost 11 years ago
10.3389/fmicb.2021.621737
Longitudinal Study of Total and Pathogenic Vibrio parahaemolyticus (tdh+ and/or trh+) in Two Natural Extraction Areas of Mytilus chilensis in Southern ChileCited by: 4
Author(s): Cristina Bacian, Cristóbal Verdugo, Katherine García, Josu Pérez-Larruscaín, Ignacio de Blás, Viviana Cachicas, Carmen López-Joven
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2020.00822
Adaptation to Bleaching: Are Thermotolerant Symbiodiniaceae Strains More Successful Than Other Strains Under Elevated Temperatures in a Model Symbiotic Cnidarian?Cited by: 10
Author(s): Casandra R. Newkirk, Thomas K. Frazer, Mark Q. Martindale, Christine E. Schnitzler
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-017-13107-7
Achilles tendon compositional and structural properties are altered after unloading by botoxCited by: 27
Author(s): Hanifeh Khayyeri, Parmis Blomgran, Malin Hammerman, Mikael J. Turunen, Annika Löwgren, Manuel Guizar‐Sicairos, Per Aspenberg, Hanna Isaksson
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-017-13447-4
Fish perform like mammals and birds in inhibitory motor control tasksCited by: 43
Author(s): Tyrone Lucon‐Xiccato, Elia Gatto, Angelo Bisazza
Software Mentions: 1
Published: almost 9 years ago
10.7554/eLife.61077
Signed and unsigned reward prediction errors dynamically enhance learning and memoryCited by: 35
Author(s): Nina Rouhani, Yaron Niv
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-017-12957-5
High rates of organic carbon processing in the hyporheic zone of intermittent streamsCited by: 33
Author(s): Ryan M. Burrows, Helen Rutlidge, Nick Bond, Stefan Eberhard, A. Auhl, Martin S. Andersen, Dominic Valdez, Mark J. Kennard
Software Mentions: 1
Published: almost 9 years ago
10.7717/peerj.11180
Colour-emotion associations in individuals with red-green colour blindnessCited by: 9
Author(s): Domicėlė Jonauskaitė, Lucia Camenzind, C. Alejandro Párraga, Cécile Ndéyane Diouf, Mathieu Mercapide Ducommun, Lauriane Müller, Mélanie Norberg, Christine Möhr
Software Mentions: 1
Published: over 5 years ago
10.1093/ve/veaa009
Properties and abundance of overlapping genes in virusesCited by: 33
Author(s): Timothy E Schlub, Edward C. Holmes
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-017-13914-y
Establishing the behavioural limits for countershaded camouflageCited by: 10
Author(s): Olivier Penacchio, Julie M. Harris, P. George Lovell
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-017-13361-9
A mammalian blood odor component serves as an approach-avoidance cue across phylum border - from flies to humansCited by: 19
Author(s): Artin Arshamian, Matthias Laska, Amy R. Gordon, Matilda Norberg, Christian Lahger, Danja K. Porada, Nadia Jelvez Serra, Emilia Johansson, Martin Schaefer, Mats Amundin, Harald Melin, Andreas Olsson, Mats Joakim Robert Olsson, Marcus C. Stensmyr, Johan N. Lundström
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0151998
Staff and Institutional Factors Associated with Substandard Care in the Management of Postpartum HemorrhageCited by: 10
Author(s): Anne Rousseau, Patrick Rozenberg, Élodie Perrodeau, Catherine Deneux‐Tharaux, Philippe Ravaud
Software Mentions: 1
Published: over 10 years ago
10.1186/1471-2164-12-209
The testosterone-dependent and independent transcriptional networks in the hypothalamus of Gpr54 and Kiss1 knockout male mice are not fully equivalentCited by: 13
Author(s): Leah M Prentice, Xavier d’Anglemont de Tassigny, Steven McKinney, Teresa Ruiz de Algara, Damian Yap, Gulisa Turashvili, Steven S.S. Poon, Margaret Sutcliffe, P Hilip L. B Allard, Angela Burleigh, John Fee, David G. Huntsman, William H Colledge, Samuel Aparicio
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0074193
Genome-Wide Meta-Analysis of Systolic Blood Pressure in Children with Sickle Cell DiseaseCited by: 21
Author(s): Pallav Bhatnagar, Emily Barron-Casella, Christopher J. Bean, Jacqueline N. Milton, Clinton T. Baldwin, Martin H. Steinberg, Michael R. DeBaun, James F. Casella, Dan E. Arking
Software Mentions: 1
Published: almost 13 years ago
10.1038/s41598-017-14774-2
Species traits and connectivity constrain stochastic community re-assemblyCited by: 5
Author(s): Rebecca E. Holt, Christopher J. Brown, Thomas A. Schlacher, Fran Sheldon, Stephen Richard Balcombe, Rod M. Connolly
Software Mentions: 1
Published: almost 9 years ago
10.3389/fmicb.2021.703993
Hyper-Aerotolerant Campylobacter coli From Swine May Pose a Potential Threat to Public Health Based on Its Quinolone Resistance, Virulence Potential, and Genetic RelatednessCited by: 1
Author(s): Jae-Ho Guk, Hyokeun Song, Saehah Yi, Jae-Uk An, Soomin Lee, Woo-Hyun Kim, Seongbeom Cho
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2019.01223
Assembly and Characterization of a Pathogen Strain Collection for Produce Safety Applications: Pre-growth Conditions Have a Larger Effect on Peroxyacetic Acid Tolerance Than Strain DiversityCited by: 14
Author(s): Anna Sophia Harrand, Jasna Kovač, Verónica Guariglia-Oropeza, David J. Kent
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2020.00635
Nevertheless, She Resisted – Role of the Environment on Listeria monocytogenes Sensitivity to Nisin Treatment in a Laboratory Cheese ModelCited by: 19
Author(s): Lory O. Henderson, B J Erazo Flores, Jordan Skeens, David J. Kent, S.C. Murphy, Martin Wiedmann, Verónica Guariglia-Oropeza
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2020.608763
Transmission, Tropism, and Biological Impacts of Torix Rickettsia in the Common Bed Bug Cimex lectularius (Hemiptera: Cimicidae)Cited by: 8
Author(s): Panupong Thongprem, Sophie E. F. Evison, Gregory D. D. Hurst, Oliver Otti
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-017-14393-x
Chimpanzees spontaneously take turns in a shared serial ordering taskCited by: 12
Author(s): Christopher F. Martin, Dora Biro, Tetsuro Matsuzawa
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-017-14473-y
Roles of dopamine neurons in mediating the prediction error in aversive learning in insectsCited by: 14
Author(s): Kanta Terao, Makoto Mizunami
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12864-016-3148-6
Genome-wide association analysis on pre-harvest sprouting resistance and grain color in U.S. winter wheatCited by: 66
Author(s): Lin Meng, Dadong Zhang, Shubing Liu, Guorong Zhang, Jianming Yu, Allan K. Fritz, Guihua Bai
Software Mentions: 1
Published: almost 10 years ago
10.14202/vetworld.2020.1303-1310
Coagulase-positive methicillin-resistant Staphylococcus aureus circulating in clinical mastitic goats in BangladeshCited by: 6
Author(s): Eaftekhar Ahmed Rana, Tridip Das, Avijit Dutta, Mizanur Rahman, Mohammad Bayazid Bostami, Nasima Akter, Himel Barua
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.58397
Regularities in species’ niches reveal the world’s climate regionsCited by: 6
Author(s): Joaquín Calatayud, Magnus Neuman, Alexis Rojas, Anton Eriksson, Martin Rosvall
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-017-4412-0
No association between ACTN3 R577X and ACE I/D polymorphisms and endurance running times in 698 Caucasian athletesCited by: 45
Author(s): Ioannis Papadimitriou, Sarah J Lockey, Sarah Voisin, Adam J. Herbert, Fleur Garton, Peter J. Houweling, Paweł Cięszczyk, Agnieszka Maciejewska-Skrendo, Marek Sawczuk, Myosotis Massidda, Carla Maria Calò, Irina V. Astratenkova, Anastasia Kouvatsi, Anastasiya M. Druzhevskaya, Jacques Michaux, Ildus I. Ahmetov, Georgina K. Stebbings, Shane M. Heffernan, Stephen H. Day, Robert M. Erskine, Charles R. Pedlar, Courtney Kipps, Klaus North, Alun G. Williams, Nir Eynon
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0048840
Preparing Offspring for a Dangerous World: Potential Costs of Being WrongCited by: 8
Author(s): Michael Coslovsky, Heinz Richner
Software Mentions: 1
Published: almost 14 years ago
10.1038/s41598-017-15119-9
Enhancing reading performance through action video games: the role of visual attention spanCited by: 29
Author(s): Alexia Antzaka, Marie Lallier, Svetlana Meyer, Julien Diard, Manuel Carreiras, Sylviane Valdois
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2164-13-22
Genome-wide association scan and phased haplotype construction for quantitative trait loci affecting boar taint in three pig breedsCited by: 44
Author(s): Vivi Raundahl Gregersen, Lene N Conley, Kirsten Kørup Sørensen, Bernt Guldbrandtsen, Ingela Velander, Christian Berthou
Software Mentions: 1
Published: over 14 years ago
10.1186/s12863-021-00974-3
How well do genetic markers inform about responses to intraspecific admixture? A comparative analysis of microsatellites and RADseqCited by: 0
Author(s): Yeşerin Yıldırım, Anders Forsman, Johanna Sunde
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0070296
Metabolic Rate and Climatic Fluctuations Shape Continental Wide Pattern of Genetic Divergence and Biodiversity in FishesCited by: 31
Author(s): Julien April, Robert Hanner, Richard L. Mayden, Louis Bernatchez
Software Mentions: 1
Published: about 13 years ago
10.1016/j.anbehav.2016.11.022
Dazzle camouflage and the confusion effect: the influence of varying speed on target trackingCited by: 18
Author(s): Benedict G. Hogan, Innes C. Cuthill, Nicholas E. Scott‐Samuel
Software Mentions: 1
Published: over 9 years ago
10.1093/aobpla/plv029
Phenotypic plasticity to light and nutrient availability alters functional trait ranking across eight perennial grassland speciesCited by: 47
Author(s): Alrun Siebenkäs, Jens Schumacher, Christiane Roscher
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0236861
Effects of telephone-based health coaching on patient-reported outcomes and health behavior change: A randomized controlled trialCited by: 13
Author(s): Sarah Dwinger, Farhad Rezvani, Levente Kriston, Lutz Herbarth, Martin Härter, Jörg Dirmaier
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-017-15640-x
The effects of sociability on exploratory tendency and innovation repertoires in wild Sumatran and Bornean orangutansCited by: 23
Author(s): Caroline Schuppli, Sofia Forss, Ellen Meulman, Suci Utami Atmoko, M. van Noordwijk, Carel van Schaik
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2156-10-13
Monoallelic maternal expression of STAT5A affects embryonic survival in cattleCited by: 19
Author(s): Hasan Khatib, Christian Maltecca, R.L. Monson, V. Schutzkus, J. J. Rutledge
Software Mentions: 1
Published: over 17 years ago
10.1038/s41598-017-15744-4
Excessive fuel availability amplifies the FTO-mediated obesity risk: results from the TUEF and Whitehall II studiesCited by: 5
Author(s): Róbert Wagner, Ádám G. Tabák, Ellen Fehlert, Louise Fritsche, Benjamin Assad Jaghutriz, Róbert János Bánhegyi, Sebastian Schmid, Harald Staiger, Fausto Machicao, Andreas Peter, Hans‐Ulrich Häring, Andreas Fritsche, Martin Heni
Software Mentions: 1
Published: almost 9 years ago
10.3389/fmicb.2016.00840
Quantitative Molecular Detection of 19 Major Pathogens in the Interdental Biofilm of Periodontally Healthy Young AdultsCited by: 62
Author(s): Florence Carrouel, Stéphane Viennot, Julie Santamaria, Philippe Veber, Denis Bourgeois
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-017-14660-x
Neonicotinoid pesticide limits improvement in buzz pollination by bumblebeesCited by: 23
Author(s): Penelope R. Whitehorn, Claire Wallace, Mario Vallejo‐Marín
Software Mentions: 1
Published: almost 9 years ago
10.7554/eLife.62825
Response-based outcome predictions and confidence regulate feedback processing and learningCited by: 24
Author(s): Romy Frömer, Matthew R. Nassar, Rasmus Bruckner, Birgit Stürmer, Werner Sommer, Nick Yeung
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0091726
Leatherback Turtle Movements, Dive Behavior, and Habitat Characteristics in Ecoregions of the Northwest Atlantic OceanCited by: 53
Author(s): Kara L. Dodge, Benjamin Galuardi, Timothy J. Miller, Molly E. Lutcavage
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2296-14-82
Do family physicians advise younger people on cardiovascular disease prevention? A cross-sectional study from SloveniaCited by: 5
Author(s): Davorina Petek, Rok Platinovšek, Zalika Klemenc–Ketiš, Janko Kersnik
Software Mentions: 1
Published: about 13 years ago
10.1186/s12862-016-0640-1
Inbreeding depression does not increase after exposure to a stressful environment: a test using compensatory growthCited by: 9
Author(s): Regina Vega‐Trejo, Megan L. Head, Michael D. Jennions
Software Mentions: 1
Published: over 10 years ago
10.1186/1471-2148-10-317
Increasing melanism along a latitudinal gradient in a widespread amphibian: local adaptation, ontogenic or environmental plasticity?Cited by: 49
Author(s): Jussi Alho, Gábor Herczeg, Fredrik Söderman, Anssi Laurila, Kjell Jonsson, Juha Merilä
Software Mentions: 1
Published: over 16 years ago
10.3389/fmicb.2020.00620
Accumulation and Competition Amongst Deformed Wing Virus Genotypes in Naïve Australian Honeybees Provides Insight Into the Increasing Global Prevalence of Genotype BCited by: 28
Author(s): Amanda M. Norton, Emily J. Remnant, Gabriele Buchmann, Madeleine Beekman
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-017-16191-x
Spontaneous body contractions are modulated by the microbiome of HydraCited by: 57
Author(s): Andrea P. Murillo-Rincón, Alexander Klimovich, Eileen Pemöller, Jan Taubenheim, Benedikt M Mortzfeld, René Augustin, Thomas C. G. Bosch
Software Mentions: 1
Published: almost 9 years ago
10.3389/fmicb.2021.642549
Effects of the Administration of Bifidobacterium longum subsp. infantis CECT 7210 and Lactobacillus rhamnosus HN001 and Their Synbiotic Combination With Galacto-Oligosaccharides Against Enterotoxigenic Escherichia coli F4 in an Early Weaned Piglet ModelCited by: 12
Author(s): Agustina Rodríguez-Sorrento, Lorena Castillejos, Paola López-Colom, Gloria Cifuentes-Orjuela, Marı́a Rodrı́guez-Palmero, José Antonio Moreno Muñoz, Diana Luise, Paolo Trevisi, S. M. Martín‐Orúe
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.9287
Pots vs trammel nets: a catch comparison study in a Mediterranean small-scale fisheryCited by: 6
Author(s): Andrea Petetta, Claudio Vasapollo, Massimo Virgili, Giada Bargione, Alessandro Lucchetti
Software Mentions: 1
Published: about 6 years ago
10.3390/vetsci7030118
The Influence of β-1,3-1,6-Glucans on Rabies Vaccination Titers in CatsCited by: 2
Author(s): John J. Byrne, Darryn L. Knobel, Susan M. Moore, Stephanie Gatrell, Patrick Butaye
Software Mentions: 1
Published: about 6 years ago
10.1186/s12862-017-0900-8
A case of modular phenotypic plasticity in the depth gradient for the gorgonian coral Antillogorgia bipinnata (Cnidaria: Octocorallia)Cited by: 12
Author(s): Iván Calixto-Botía, Juan A. Sánchez
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-017-16393-3
Resident Microbiome Disruption with Antibiotics Enhances Virulence of a Colonizing PathogenCited by: 30
Author(s): Courtney A. Thomason, Nathan Mullen, Lisa K. Belden, Meghan May, Dana M. Hawley
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12862-020-01724-2
Stress-related changes in leukocyte profiles and telomere shortening in the shortest-lived tetrapod, Furcifer labordiCited by: 3
Author(s): Falk Eckhardt, Angela Pauliny, Nicky Rollings, Frank Mutschmann, Mats Olsson, Cornelia Kraus, Peter M. Kappeler
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12862-019-1399-y
A comparison of reproductive isolation between two closely related oak species in zones of recent and ancient secondary contactCited by: 4
Author(s): Wan‐Jin Liao, Bi‐Ru Zhu, Yuefei Li, Xiaomeng Li, Yan‐Fei Zeng, Dayong Zhang
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-020-79160-x
Experimental evidence for yawn contagion in orangutans (Pongo pygmaeus)Cited by: 20
Author(s): Evy van Berlo, Alejandra P. Díaz-Loyo, Oscar E. Juárez-Mora, Mariska E. Kret, Jorg J. M. Massen
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2148-12-41
Reciprocal cooperation between unrelated rats depends on cost to donor and benefit to recipientCited by: 73
Author(s): Karin Schneeberger, Melanie Dietz, Michael Taborsky
Software Mentions: 1
Published: over 14 years ago
10.1186/1471-2148-14-108
A common-garden experiment to quantify evolutionary processes in copepods: the case of emamectin benzoate resistance in the parasitic sea louse Lepeophtheirus salmonisCited by: 30
Author(s): Lina Eva Robin Ljungfeldt, Per Gunnar Espedal, Frank Nilsen, Mette Skern‐Mauritzen, Kevin A. Glover
Software Mentions: 1
Published: over 12 years ago
10.3389/fmicb.2020.562220
Effects of Mosquito Microbiota on the Survival Cost and Development Success of Avian PlasmodiumCited by: 11
Author(s): Josué Martínez‐de la Puente, Rafael Gutiérrez‐López, Alazne Díez‐Fernández, Ramón C. Soriguer, Isabel Moreno-Indias, Jordi Figuerola
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-017-16433-y
Reduced loss aversion in pathological gambling and alcohol dependence is associated with differential alterations in amygdala and prefrontal functioningCited by: 47
Author(s): Alexander Genauck, Saskia Quester, Torsten Wüstenberg, Chantal Mörsen, Andreas Heinz, Nina Romanczuk-Seiferth
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12862-017-0952-9
No evidence for strong cytonuclear conflict over sex allocation in a simultaneously hermaphroditic flatwormCited by: 15
Author(s): Nikolas Vellnow, Dita B. Vizoso, Gudrun Viktorin, Lukas Schärer
Software Mentions: 1
Published: over 9 years ago