10.1016/j.jmb.2014.04.026

SuSPect: Enhanced Prediction of Single Amino Acid Variant (SAV) Phenotype Using Network Features
Cited by: 181
Author(s): Christopher M. Yates, Ioannis Filippis, Lawrence A. Kelley, Michael J.E. Sternberg
Software Mentions: 4
Published: about 12 years ago

10.7554/eLife.65582

Neural correlates of ingroup bias for prosociality in rats
Cited by: 25
Author(s): Inbal Ben-Ami Bartal, Jocelyn Breton, Huanjie Sheng, Kimberly L.P. Long, Stella Chen, Aline Halliday, Justin W. Kenney, Anne L. Wheeler, Paul W. Frankland, Carrie Shilyansky, Karl Deisseroth, Dacher Keltner, Daniela Kaufer
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms22041591

Reciprocal Changes in miRNA Expression with Pigmentation and Decreased Proliferation Induced in Mouse B16F1 Melanoma Cells by l-Tyrosine and 5-Bromo-2′-Deoxyuridine
Cited by: 4
Author(s): Hernán Mauricio Rivera, Esther Natalia Muñoz, Daniel Osuna, Mauro Florez, Michael Carvajal, Luis Alberto Gómez
Software Mentions: 4
Published: over 5 years ago

10.2196/jmir.7347

Tracing the Potential Flow of Consumer Data: A Network Analysis of Prominent Health and Fitness Apps
Cited by: 39
Author(s): Quinn Grundy, Fabian Held, Lisa Bero
Software Mentions: 4
Published: about 9 years ago

10.2196/10942

Estimating Determinants of Attrition in Eating Disorder Communities on Twitter: An Instrumental Variables Approach
Cited by: 6
Author(s): Tao Wang, Emmanouil Mentzakis, Markus Brede, Antonella Ianni
Software Mentions: 4
Published: over 7 years ago

10.1186/s11689-018-9248-7

Characterization of autism spectrum disorder and neurodevelopmental profiles in youth with XYY syndrome
Cited by: 21
Author(s): Lisa Joseph, Cristan Farmer, Colby Chlebowski, Laura Henry, Ari M. Fish, Catherine Mankiw, Anastasia Xenophontos, Liv S. Clasen, Bethany Sauls, Jakob Seidlitz, Jonathan D. Blumenthal, Erin Torres, Audrey Thurm, Armin Raznahan
Software Mentions: 4
Published: almost 8 years ago

10.1080/20002297.2021.1946316

Microbial characteristics across different tongue coating types in a healthy population
Cited by: 5
Author(s): Hairong Chen, Qingwei Li, Min Li, Sheng Liu, Chensi Yao, Zixiong Wang, Zhixin Zhao, Ping Liu, Fan Yang, Xinjian Li, Jun Wang, Yi-Xin Zeng, Xiaolin Tong
Software Mentions: 4
Published: over 5 years ago

10.1016/j.onehlt.2020.100177

Whence the next pandemic? The intersecting global geography of the animal-human interface, poor health systems and air transit centrality reveals conduits for high-impact spillover
Cited by: 30
Author(s): Michael Walsh, Shailendra Sawleshwarkar, Shah Monir Hossain, Siobhan M. Mor
Software Mentions: 4
Published: almost 6 years ago

10.3390/nu9121307

Exploring the Impact of Food on the Gut Ecosystem Based on the Combination of Machine Learning and Network Visualization
Cited by: 14
Author(s): Hideaki Shima, Shizuka Masuda, Yasuhiro Date, Amiu Shino, Yuuri Tsuboi, Mizuho Kajikawa, Yoshihiro Inoué, Taisei Kanamoto, Jun Kikuchi
Software Mentions: 4
Published: almost 9 years ago

10.1002/ece3.4664

Social structure contains epidemics and regulates individual roles in disease transmission in a group-living mammal
Cited by: 34
Author(s): Carly Rozins, Matthew J. Silk, Darren P. Croft, Richard J. Delahay, Dave Hodgson, Robbie A. McDonald, Nicola Weber, Mike Boots
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0252471

Influence of number of individuals and observations per individual on a model of community structure
Cited by: 4
Author(s): Julia Sunga, Quinn M. R. Webber, Hugh G. Broders
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0211546

Factors influencing sedentary behaviour: A system based analysis using Bayesian networks within DEDIPAC
Cited by: 23
Author(s): Christoph Buck, Anne Loyen, Ronja Foraita, Jelle Van Cauwenberg, Marieke De Craemer, Ciarán MacDonncha, Jean‐Michel Oppert, Johannes Brug, Nanna Lien, Greet Cardon, Iris Pigeot, Sébastien Chastin
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.4646

Killer whales (<i>Orcinus orca</i>) in Iceland show weak genetic structure among diverse isotopic signatures and observed movement patterns
Cited by: 6
Author(s): Sara B. Tavares, Filipa I. P. Samarra, Sónia Pascoal, Jeff A. Graves, Patrick J. O. Miller
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0254852

Ward-level factors associated with methicillin-resistant Staphylococcus aureus acquisition–an electronic medical records study in Singapore
Cited by: 2
Author(s): Zaw Tun, Dale Fisher, Sharon Salmon, Clarence C. Tam
Software Mentions: 4
Published: about 5 years ago

10.1192/j.eurpsy.2021.2223

Feelings of worthlessness links depressive symptoms and parental stress: A network analysis during the COVID-19 pandemic
Cited by: 18
Author(s): Nora Skjerdingstad, Miriam S. Johnson, Sverre Urnes Johnson, Asle Hoffart, Omid V. Ebrahimi
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0028646

RegnANN: Reverse Engineering Gene Networks Using Artificial Neural Networks
Cited by: 10
Author(s): Marco Grimaldi, Roberto Visintainer, Giuseppe Jurman
Software Mentions: 4
Published: over 14 years ago

10.1002/ece3.5071

Space use and social association in a gregarious ungulate: Testing the conspecific attraction and resource dispersion hypotheses
Cited by: 36
Author(s): Mélissa Peignier, Quinn M. R. Webber, Erin L. Koen, Michel P. Laforge, Alec L. Robitaille, Eric Vander Wal
Software Mentions: 4
Published: over 7 years ago

10.1186/s13059-020-01964-x

Longitudinal survey of microbiome associated with particulate matter in a megacity
Cited by: 55
Author(s): Nan Qin, Peng Liang, Chunyan Wu, Guanqun Wang, Qian Xu, Xiong Xiao, Tingting Wang, Moreno Zolfo, Nicola Segata, Huanlong Qin, Rob Knight, Jack A. Gilbert, Ting Zhu
Software Mentions: 4
Published: over 6 years ago

10.3390/genes11010031

Transcriptome-Wide Analysis Reveals Key DEGs in Flower Color Regulation of Hosta plantaginea (Lam.) Aschers
Cited by: 7
Author(s): Jingying Zhang, Changhai Sui, Yanli Wang, Shuying Liu, Huimin Liu, Zhengren Zhang, Liu Hong-zhang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-75259-3

Decrease in social cohesion in a colonial seabird under a perturbation regime
Cited by: 6
Author(s): Meritxell Genovart, Olivier Giménez, Albert Bertolero, Rémi Choquet, Daniel Oró, Roger Pradel
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.5751

Using co‐occurrence network topology in assessing ecological stress in benthic macroinvertebrate communities
Cited by: 2
Author(s): Ariel Levi Simons, Raphael D. Mazor, Susanna Theroux
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0231832

Abundance, density, and social structure of African forest elephants (Loxodonta cyclotis) in a human-modified landscape in southwestern Gabon
Cited by: 4
Author(s): Colin M. Brand, Mireille Johnson, Lillian D. Parker, Jesús E. Maldonado, Lisa Körte, Hadrien Vanthomme, Alfonso Alonso, María José Ruiz‐López, Caitlin Wells, Nelson Ting
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0156807

Pyrosequencing Unveils Cystic Fibrosis Lung Microbiome Differences Associated with a Severe Lung Function Decline
Cited by: 23
Author(s): Giovanni Bacci, Patrizia Paganin, Loredana Lopez, Chiara Vanni, Claudia Dalmastri, Cristina Cantale, Loretta Daddiego, Gaetano Perrotta, Daniela Dolce, Patrizia Morelli, Vanessa Tuccio Guarna Assanti, A. De Alessandri, Ersilia Fiscarelli, Giovanni Taccetti, Vincenzina Lucidi, Annamaria Bevivino, Alessio Mengoni
Software Mentions: 4
Published: about 10 years ago

10.1016/j.gpb.2018.08.002

PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System
Cited by: 19
Author(s): Huan Qi, Zhenhong Jiang, Kang Zhang, Shiping Yang, Fei He, Ziding Zhang
Software Mentions: 4
Published: about 8 years ago

10.3389/fcell.2019.00082

Transcriptome Analysis of Small Molecule–Mediated Astrocyte-to-Neuron Reprogramming
Cited by: 30
Author(s): Xin Ning, Jiu Chao Yin, Gong Chen
Software Mentions: 4
Published: over 7 years ago

10.3389/fcimb.2020.608020

Investigating Major Recurring Campylobacter jejuni Lineages in Luxembourg Using Four Core or Whole Genome Sequencing Typing Schemes
Cited by: 12
Author(s): Morgane Nennig, Ann-Katrin Llarena, Malte Herold, Joël Mossong, Christian Penny, Serge Losch, Odile Tresse, Catherine Ragimbeau
Software Mentions: 4
Published: over 5 years ago

10.3389/fcimb.2018.00187

Staphylococcus aureus CC30 Lineage and Absence of sed,j,r-Harboring Plasmid Predict Embolism in Infective Endocarditis
Cited by: 3
Author(s): Jean-Philippe Rasigade, Amélie Leclère, François Alla, Adrien Tessier, Michèle Bes, Catherine Lechiche, Véronique Vernet-Garnier, Cédric Laouénan, François Vandenesch, Catherine Leport
Software Mentions: 4
Published: over 8 years ago

10.1128/mSystems.00729-19

Global Network Analysis of Neisseria gonorrhoeae Identifies Coordination between Pathways, Processes, and Regulators Expressed during Human Infection
Cited by: 7
Author(s): Ryan McClure, Ashwini Sunkavalli, Phillip M. Balzano, Paola Massi, Christine Cho, William M. Nauseef, Michael A. Apicella, Caroline A. Genco
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0107629

Tracking Difference in Gene Expression in a Time-Course Experiment Using Gene Set Enrichment Analysis
Cited by: 4
Author(s): Pui Shan Wong, Michihiro Tanaka, Yoshihiko Sunaga, Masayoshi Tanaka, Tadatsugu Taniguchi, Tomoko Yoshino, Tsuyoshi Tanaka, Wataru Fujibuchi, Sachiyo Aburatani
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0026605

Leaders Are More Attractive: Birds with Bigger Yellow Breast Patches Are Followed by More Group-Mates in Foraging Groups
Cited by: 20
Author(s): Zoltán Tóth, Matteo Griggio
Software Mentions: 4
Published: almost 15 years ago

10.1371/journal.pone.0230941

Demarcating geographic regions using community detection in commuting networks with significant self-loops
Cited by: 14
Author(s): Mark He, Joseph Glasser, Nathaniel Pritchard, Shankar Bhamidi, Nikhil Kaza
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.629475

Luminal A Breast Cancer Co-expression Network: Structural and Functional Alterations
Cited by: 11
Author(s): Diana García-Cortés, Enrique Hernández‐Lemus, Jesús Espinal-Enríquez
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2015.00208

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality
Cited by: 585
Author(s): Zhian N. Kamvar, Jonah C. Brooks, Niklaus J. Grünwald
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0160791

Natural Cubic Spline Regression Modeling Followed by Dynamic Network Reconstruction for the Identification of Radiation-Sensitivity Gene Association Networks from Time-Course Transcriptome Data
Cited by: 31
Author(s): Agata Michna, Herbert Braselmann, Martin Selmansberger, Anne Dietz, Julia Heß, Maria Gomolka, Sabine Hornhardt, Nils Blüthgen, Horst Zitzelsberger, Kristian Unger
Software Mentions: 4
Published: about 10 years ago

10.3389/fgene.2019.00070

Global Genetics Research in Prostate Cancer: A Text Mining and Computational Network Theory Approach
Cited by: 5
Author(s): Md. Facihul Azam, Aliyu Musa, Matthias Dehmer, Olli Yli‐Harja, Frank Emmert‐Streib
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0222016

Impact of care provider network characteristics on patient outcomes: Usage of social network analysis and a multi-scale community detection
Cited by: 13
Author(s): Mina Ostovari, Denny Yu
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0249839

A targeted e-learning approach for keeping universities open during the COVID-19 pandemic while reducing student physical interactions
Cited by: 19
Author(s): Sing Chen Yeo, Clin K Y Lai, Jacinda Tan, Joshua J. Gooley
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0232681

Network analysis of regional livestock trade in West Africa
Cited by: 24
Author(s): Valerie C. Valerio, Olivier Walther, M. Eilittä, Brahima Cissé, Rachata Muneepeerakul, Gregory A. Kiker
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0194656

Social network cohesion in school classes promotes prosocial behavior
Cited by: 31
Author(s): Wouter van den Bos, Eveline A. Crone, Rosa Meuwese, Berna Güroğlu
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0246919

Tree rows in temperate agroforestry croplands alter the composition of soil bacterial communities
Cited by: 25
Author(s): Lukas Beule, Petr Karlovský
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-74798-z

Epigenetic alterations in skin homing CD4+CLA+ T cells of atopic dermatitis patients
Cited by: 19
Author(s): Nathalie Acevedo, Rui Benfeitas, Shintaro Katayama, Sören Bruhn, Ann‐Catrin Andersson, Gustav Wikberg, Lena Lundeberg, Jessica M. Lindvall, Dario Greco, Juha Kere, Cilla Söderhäll, Annika Scheynius
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2018.00412

Network, Transcriptomic and Genomic Features Differentiate Genes Relevant for Drug Response
Cited by: 14
Author(s): Janet Piñero, Abel González-Pérez, Emre Güney, Joaquim Aguirre‐Plans, Ferrán Sanz, Baldo Oliva, Laura I. Furlong
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0224197

A new resolution function to evaluate tree shape statistics
Cited by: 7
Author(s): Maryam Hayati, Bita Shadgar, Leonid Chindelevitch
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41398-019-0448-z

Co-expression network modeling identifies key long non-coding RNA and mRNA modules in altering molecular phenotype to develop stress-induced depression in rats
Cited by: 27
Author(s): Qingzhong Wang, Bhaskar Roy, Yogesh K. Dwivedi
Software Mentions: 4
Published: over 7 years ago

10.1016/j.gpb.2016.04.004

Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
Cited by: 38
Author(s): Hideki Uosaki, Y-h. Taguchi
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0122309

Module-Based Association Analysis for Omics Data with Network Structure
Cited by: 5
Author(s): Zhi Wang, Arnab Maity, Chuhsing Kate Hsiao, Deepak Voora, Rima Kaddurah‐Daouk, Jung Ying Tzeng
Software Mentions: 4
Published: over 11 years ago

10.3389/fnhum.2020.00255

Aerobic Exercise Induces Functional and Structural Reorganization of CNS Networks in Multiple Sclerosis: A Randomized Controlled Trial
Cited by: 9
Author(s): Jan‐Patrick Stellmann, Adil Maarouf, Schulz Kh, Lisa Baquet, Jana Pöttgen, Stefan Patra, Iris Katharina Penner, Susanne Gellißen, Gesche Ketels, Pierre Besson, Jean Philippe Ranjeva, Maxime Guye, Guido Nolte, Andreas K. Engel, Bertrand Audoin, Christoph Heesen, Stefan M. Gold
Software Mentions: 4
Published: about 6 years ago

10.3389/fnhum.2015.00440

Genetic network properties of the human cortex based on regional thickness and surface area measures
Cited by: 12
Author(s): Anna R. Docherty, Chelsea Sawyers, Matthew S. Panizzon, Michael C. Neale, Lisa T. Eyler, Christine Fennema-Notestine, Carol E. Franz, Chi‐Hua Chen, Linda K. McEvoy, Brad Verhulst, Ming T. Tsuang, William S. Kremen
Software Mentions: 4
Published: about 11 years ago

10.1186/s13059-018-1426-0

Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing
Cited by: 79
Author(s): Xiaoping Han, Haide Chen, Daosheng Huang, Huidong Chen, Lijiang Fei, Chen Cheng, He Huang, Guo Cheng Yuan, Guoji Guo
Software Mentions: 4
Published: over 8 years ago

10.2196/27317

Analyzing Cross-country Pandemic Connectedness During COVID-19 Using a Spatial-Temporal Database: Network Analysis
Cited by: 14
Author(s): Amanda M. Y. Chu, Jacky N. L. Chan, Jenny T. Y. Tsang, Afy Tiwari, Mike K. P. So
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2020.00852

Lnc-ITSN1-2, Derived From RNA Sequencing, Correlates With Increased Disease Risk, Activity and Promotes CD4+ T Cell Activation, Proliferation and Th1/Th17 Cell Differentiation by Serving as a ceRNA for IL-23R via Sponging miR-125a in Inflammatory Bowel Disease
Cited by: 36
Author(s): Jiayan Nie, Qiu Zhao
Software Mentions: 4
Published: over 6 years ago

10.1038/s41398-019-0472-z

DLPFC transcriptome defines two molecular subtypes of schizophrenia
Cited by: 26
Author(s): Elijah F. W. Bowen, Jack L. Burgess, Richard Granger, Joel E. Kleinman, C. Harker Rhodes
Software Mentions: 4
Published: over 7 years ago

10.3389/fmed.2021.685124

Network Analysis of Outpatients to Identify Predictive Symptoms and Combinations of Symptoms Associated With Positive/Negative SARS-CoV-2 Nasopharyngeal Swabs
Cited by: 4
Author(s): Hervé Spechbach, Frédérique Jacquerioz, Virginie Prendki, Laurent Kaiser, Mikaëla Smit, Alexandra Calmy, François Chappuis, Idris Guessous, Julien Salamun, Stéphanie Baggio
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0041370

Identification of Catalytic Residues Using a Novel Feature that Integrates the Microenvironment and Geometrical Location Properties of Residues
Cited by: 12
Author(s): Lei Han, Yongjun Zhang, Jiangning Song, Ming S. Liu, Ziding Zhang
Software Mentions: 4
Published: about 14 years ago

10.1038/s41398-020-0776-z

Elevated serum chemokine CCL22 levels in first-episode psychosis: associations with symptoms, peripheral immune state and in vivo brain glial cell function
Cited by: 14
Author(s): Heikki Laurikainen, Arja Vuorela, Anna Toivonen, Linnea Reinert-Hartwall, Kalevi Trontti, Maija Lindgren, Jaakko Keinänen, Teemu Mäntylä, Janina Paju, Tuula Ilonen, Reetta-Liina Armio, Maija Walta, Jouni Tuisku, Semi Helin, Päivi Marjamäki, Iiris Hovatta, Sebastian Therman, Outi Vaarala, Outi Linnaranta, Tuula Kieseppä, Raimo K. R. Salokangas, Jarno Honkanen, Jarmo Hietala, Jaana Suvisaari
Software Mentions: 4
Published: over 6 years ago

10.3390/jcm8101663

Revealing Associations between Diagnosis Patterns and Acupoint Prescriptions Using Medical Data Extracted from Case Reports
Cited by: 13
Author(s): Cheol Han Kim, Da Eun Yoon, Ye-Seul Lee, Won Jai Jung, Joo Hee Kim, Younbyoung Chae
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2020.618287

Niche Differentiation of Comammox Nitrospira in the Mudflat and Reclaimed Agricultural Soils Along the North Branch of Yangtze River Estuary
Cited by: 22
Author(s): Xinxin Wang, Lu Lu, Xue Zhou, Xiufeng Tang, Lu Kuang, Junhui Chen, Jun Shan, Huijie Lü, Hua Qin, Jonathan M. Adams, Baozhan Wang
Software Mentions: 4
Published: over 5 years ago

10.1186/2043-9113-1-34

Profiling the human response to physical exercise: a computational strategy for the identification and kinetic analysis of metabolic biomarkers
Cited by: 36
Author(s): Michael Netzer, Klaus M. Weinberger, Michael Handler, Michael Seger, Xuekun Fang, Karl G. Kugler, Armin Graber, Christian Baumgartner
Software Mentions: 4
Published: over 15 years ago

10.3389/fmicb.2017.02559

Patterns and Drivers of Vertical Distribution of the Ciliate Community from the Surface to the Abyssopelagic Zone in the Western Pacific Ocean
Cited by: 32
Author(s): Feng Zhao, Sabine Filker, Kuidong Xu, Pingping Huang, Shan Zheng
Software Mentions: 4
Published: over 8 years ago

10.3906/biy-2005-115

Integration of transcriptomic profile of SARS-CoV-2 infected normal human bronchial epi-thelial cells with metabolic and protein-protein interaction networks
Cited by: 8
Author(s): Hamza Umut Karakurt, Pınar Pir
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.00158

Distinct Assembly Mechanisms Underlie Similar Biogeographic Patterns of Rare and Abundant Bacterioplankton in Cascade Reservoirs of a Large River
Cited by: 31
Author(s): Carlos Juan, Peifang Wang, Chao Wang, Xun Wang, Lingzhan Miao, Sheng Liu, Qiusheng Yuan, Shenghao Sun
Software Mentions: 4
Published: over 6 years ago

10.1128/mSphere.00245-21

Collateral Sensitivity to β-Lactam Drugs in Drug-Resistant Tuberculosis Is Driven by the Transcriptional Wiring of BlaI Operon Genes
Cited by: 2
Author(s): Anna S Trigos, Benjamin Goudey, Justin Bedő, Thomas Conway, Noel Faux, Kelly L. Wyres
Software Mentions: 4
Published: about 5 years ago

10.1074/jbc.RA119.011010

Synergistic mutations in soluble guanylyl cyclase (sGC) reveal a key role for interfacial regions in the sGC activation mechanism
Cited by: 8
Author(s): Kenneth C Childers, Xin‐Qiu Yao, Sam Giannakoulias, Joshua Amason, Donald Hamelberg, Elsa D. Garcin
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-53966-w

Alteration of the aggregation and spatial organization of the vector of Chagas disease, Triatoma infestans, by the parasite Trypanosoma cruzi
Cited by: 8
Author(s): Stéphanie Depickère, Gonzalo Marcelo Ramírez-Ávila, Jean‐Louis Deneubourg
Software Mentions: 4
Published: almost 7 years ago

10.3390/insects10080252

Vertical and Horizontal Trophic Networks in the Aroid-Infesting Insect Community of Los Tuxtlas Biosphere Reserve, Mexico
Cited by: 2
Author(s): Guadalupe Amancio, Armando Aguirre‐Jaimes, Vicente Hernández-Ortíz, Roger Guevara, Maurício Quesada
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0123569

XomAnnotate: Analysis of Heterogeneous and Complex Exome- A Step towards Translational Medicine
Cited by: 5
Author(s): Asoke K. Talukder, Shashidhar Ravishankar, Krittika Sasmal, Santhosh Gandham, Jyothsna Prabhukumar, Prahalad Achutharao, Debmalya Barh, Francesco Blasi
Software Mentions: 4
Published: over 11 years ago

10.1186/s13012-016-0499-y

Forging a link between mentoring and collaboration: a new training model for implementation science
Cited by: 35
Author(s): Douglas A. Luke, Ana A. Baumann, Bobbi J. Carothers, John Landsverk, Enola K. Proctor
Software Mentions: 4
Published: almost 10 years ago

10.1016/j.heliyon.2021.e07748

Massive surge of mRNA expression of clonal B-cell receptor in patients with COVID-19
Cited by: 4
Author(s): Yohei Funakoshi, Goh Ohji, Kimikazu Yakushijin, Kei Ebisawa, Yu Arakawa, Jun Saegusa, Hidenari Matsumoto, Tatsuya Imanishi, Eriko Fukuda, Takaji Matsutani, Yasuko Mori, Kentaro Iwata, Hironobu Minami
Software Mentions: 4
Published: about 5 years ago

10.3389/fvets.2021.611132

Livestock Network Analysis for Rhodesiense Human African Trypanosomiasis Control in Uganda
Cited by: 1
Author(s): Walter Okello, C. Amongi, Dennis Muhanguzi, Ewan T. MacLeod, Charles Waiswa, Alexandra Shaw, Susan C. Welburn
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-81507-x

Multiple bacteria associated with the more dysbiotic genitourinary microbiomes in patients with type 2 diabetes mellitus
Cited by: 6
Author(s): Hua Zha, Fengping Liu, Zongxin Ling, Kevin Chang, Jiezuan Yang, Lanjuan Li
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-61288-5

Forecasting risk gene discovery in autism with machine learning and genome-scale data
Cited by: 21
Author(s): Leo Brueggeman, Tanner Koomar, Jacob J. Michaelson
Software Mentions: 4
Published: over 6 years ago

10.1128/mSystems.00960-20

Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors
Cited by: 3
Author(s): Chen Fu, Shiping Yang, Xiaodi Yang, Xianyi Lian, Yan Huang, Xiaobao Dong, Ziding Zhang
Software Mentions: 4
Published: over 5 years ago

10.1534/g3.120.401545

Genome-Wide Screen for Context-Dependent Tumor Suppressors Identified Using in Vivo Models for Neoplasia in Drosophila
Cited by: 3
Author(s): Casper Groth, Pooja Vaid, Aditi S. Khatpe, Nelchi Prashali, Avantika Ahiya, Diāna Andrējeva, Madhumita Chakladar, Sanket Nagarkar, Rachel Paul, Devaki A. Kelkar, Teresa Eichenlaub, Héctor Herranz, T.S. Sridhar, Stephen M. Cohen, L. S. Shashidhara
Software Mentions: 4
Published: about 6 years ago

10.1080/22221751.2018.1563458

Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black women
Cited by: 22
Author(s): Liying Yang, Yuhan Hao, Jiyuan Hu, Dervla Kelly, Hui-Lin Li, Stuart M. Brown, Carley Tasker, Natalie Roche, Theresa L. Chang, Zhiheng Pei
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.5567

Predicting species occurrences with habitat network models
Cited by: 1
Author(s): Damian O. Ortiz‐Rodríguez, Antoine Guisan, Rolf Holderegger, Maarten J. van Strien
Software Mentions: 4
Published: about 7 years ago

10.3390/e15114932

Dynamical Structure of a Traditional Amazonian Social Network
Cited by: 24
Author(s): Paul L. Hooper, Simon DeDeo, Ann E. Caldwell Hooper, Michael Gurven, Hillard Kaplan
Software Mentions: 4
Published: almost 13 years ago

10.1038/s41598-021-94724-1

A systematic comparison of community detection algorithms for measuring selective exposure in co-exposure networks
Cited by: 5
Author(s): Subhayan Mukerjee
Software Mentions: 4
Published: about 5 years ago

10.1111/1462-2920.13463

Pediatric obesity is associated with an altered gut microbiota and discordant shifts in <scp><i>F</i></scp><i>irmicutes</i> populations
Cited by: 286
Author(s): Alessandra Riva, Francesca Borgo, Carlotta Lassandro, Elvira Verduci, Giulia Morace, Elisa Borghi, David Berry
Software Mentions: 4
Published: about 10 years ago

10.1186/s40793-020-00363-w

Reducing the arbitrary: fuzzy detection of microbial ecotones and ecosystems – focus on the pelagic environment
Cited by: 3
Author(s): Antoine Bagnaro, Federico Baltar, G. Brownstein, William G. Lee, Sergio E. Morales, Daniel W. Pritchard, Christopher D. Hepburn
Software Mentions: 4
Published: about 6 years ago

10.1007/s11357-020-00195-z

Nursing homes and the elderly regarding the COVID-19 pandemic: situation report from Hungary
Cited by: 37
Author(s): Gábor Kemenesi, László Kornya, Gábor Endre Tóth, Kornélia Kurucz, Safia Zeghbib, B Somogyi, Viktor Zöldi, Péter Urbán, Róbert Herczeg, Ferenc Jakab
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0244839

A scientometric overview of CORD-19
Cited by: 45
Author(s): Giovanni Colavizza, Rodrigo Costas, Vincent Traag, Nees Jan van Eck, Thed N. van Leeuwen, Ludo Waltman
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0193425

Consistent individual differences and population plasticity in network-derived sociality: An experimental manipulation of density in a gregarious ungulate
Cited by: 9
Author(s): Paul Philip O'Brien, Quinn M. R. Webber, Eric Vander Wal
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0102856

Thermostability of In Vitro Evolved Bacillus subtilis Lipase A: A Network and Dynamics Perspective
Cited by: 23
Author(s): Ashutosh Srivastava, Somdatta Sinha
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0244299

An avian dominance hierarchy at a supplemental water source in the Patagonian steppe
Cited by: 2
Author(s): Sophie Rabinowicz, Natalia C. García, Tristan Herwood, Amanda Lazar, Benjamin Hein, Eliot T. Miller, Leonardo Campagna
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0148135

Symbiotic Bacteria in Gills and Guts of Chinese Mitten Crab (Eriocheir sinensis) Differ from the Free-Living Bacteria in Water
Cited by: 71
Author(s): Meiling Zhang, Yanfa Sun, Liqiao Chen, Chen Cai, Fang Qiao, Zhen‐Yu Du, Erchao Li
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0111262

Consensus between Pipelines in Structural Brain Networks
Cited by: 20
Author(s): Christopher S. Parker, Fani Deligianni, M. Jorge Cardoso, Pankaj Daga, Marc Modat, Michael Dayan, Chris A. Clark, Sébastien Ourselin, Jonathan D. Clayden
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0083167

Structural Propensities of Human Ubiquitination Sites: Accessibility, Centrality and Local Conformation
Cited by: 9
Author(s): Yuan Zhou, Sixue Liu, Jiangning Song, Ziding Zhang
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0123545

Characterizing Task-Based OpenMP Programs
Cited by: 7
Author(s): Ananya Muddukrishna, Peter Jönsson, Mats Brorsson
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0204186

EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma
Cited by: 6
Author(s): Borong Shao, Maria Moksnes Bjaanæs, Åslaug Helland, Christof Schütte, Tim Conrad
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0106052

Dimensionality of Social Networks Using Motifs and Eigenvalues
Cited by: 30
Author(s): Anthony Bonato, David F. Gleich, Myung‐Hwan Kim, Dieter Mitsche, Paweł Prałat, Yanhua Tian, Stephen J. Young
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0242621

Victims, offenders and victim-offender overlaps of knife crime: A social network analysis approach using police records
Cited by: 11
Author(s): Louis Bailey, Vincent Harinam, Barak Ariel
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0078059

Perturbation Centrality and Turbine: A Novel Centrality Measure Obtained Using a Versatile Network Dynamics Tool
Cited by: 25
Author(s): Kristóf Z. Szalay, Péter Csermely
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0219771

Descriptive analysis of horse movement networks during the 2015 equestrian season in Ontario, Canada
Cited by: 7
Author(s): Kelsey L. Spence, Terri L. O’Sullivan, Zvonimir Poljak, Amy L. Greer
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0232458

A network analysis of research productivity by country, discipline, and wealth
Cited by: 35
Author(s): Klaus Jaffé, Enrique ter Horst, Laura H Gunn, Juan Diego Zambrano, Germán Molina
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0202615

Tracking a serial killer: Integrating phylogenetic relationships, epidemiology, and geography for two invasive meningococcal disease outbreaks
Cited by: 8
Author(s): Ifeoma Ezeoke, Madeline R. Galac, Ying Lin, Alvin T. Liem, Pierce A. Roth, Andy Kilianski, Henry S. Gibbons, Danielle Bloch, John Kornblum, Paula Del Rosso, Daniel Janies, Don Weiss
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0142443

Gene Network Rewiring to Study Melanoma Stage Progression and Elements Essential for Driving Melanoma
Cited by: 9
Author(s): Abhinav Kaushik, Yashuma Bhatia, Shakir Ali, Dinesh Gupta
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0027368

Defining the Role of Essential Genes in Human Disease
Cited by: 85
Author(s): Jonathan E. Dickerson, Ana Zhu, David L. Robertson, Kathryn E. Hentges
Software Mentions: 3
Published: almost 15 years ago

10.1371/journal.pone.0153381

Kin-Aggregations Explain Chaotic Genetic Patchiness, a Commonly Observed Genetic Pattern, in a Marine Fish
Cited by: 40
Author(s): Jason D. Selwyn, J. Derek Hogan, Alan M. Downey‐Wall, Lauren Gurski, David S. Portnoy, Daniel D. Heath
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0141191

The Importance of Networking in Autism Gaze Analysis
Cited by: 21
Author(s): Quentin Guillon, Mohammad H. Afzali, Bernadette Rogé, Sophie Baduel, Jeanne Kruck, Nouchine Hadjikhani
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0234095

Validity, reliability and cut-offs of the Patient Health Questionnaire-9 as a screening tool for depression among patients living with epilepsy in Rwanda
Cited by: 12
Author(s): Fidèle Sebera, João Ricardo Nickenig Vissoci, Josiane Umwiringirwa, Dirk E. Teuwen, Paul E. Boon, Peter Dedeken
Software Mentions: 3
Published: over 6 years ago