cran: igraph | Projects | Ecosyste.ms: Papers

10.1186/s12866-020-01827-2

Vital members in the gut microbiotas altered by two probiotic Bifidobacterium strains against liver damage in rats
Cited by: 8
Author(s): Hua Zha, Daiqiong Fang, Aimee L. van der Reis, Kevin Chang, Liya Yang, Jiao-Jiao Xie, Ding Shi, Qiaomai Xu, Yating Li
Software Mentions: 4
Published: about 6 years ago

10.1186/1752-0509-6-72

Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum
Cited by: 12
Author(s): Daniela Beißer, Markus A. Grohme, Joachim Kopka, Marcus Frohme, Ralph O. Schill, Steffen Hengherr, Thomas Dandekar, Gunnar W. Klau, Marcus Dittrich, Tobias Müller
Software Mentions: 4
Published: about 14 years ago

10.3389/fmicb.2020.576661

Distinct Distribution of Archaea From Soil to Freshwater to Estuary: Implications of Archaeal Composition and Function in Different Environments
Cited by: 14
Author(s): Hualong Wang, Raven L. Bier, Laura Zgleszewski, Marc Peipoch, Emmanuel C. Omondi, Atanu Mukherjee, Feng Chen, Chuanlun Zhang, Jinjun Kan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2016.00434

Restructuring of Epibacterial Communities on Fucus vesiculosus forma mytili in Response to Elevated pCO2 and Increased Temperature Levels
Cited by: 26
Author(s): Birte Mensch, Sven C. Neulinger, Angelika Graiff, Andreas Pansch, Sven Künzel, Martin Fischer, Ruth A. Schmitz
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2019.01015

Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere
Cited by: 48
Author(s): Xin Qian, Hanzhou Li, Yong-Long Wang, Bian Wu, Mingsong Wu, Liang Chen, Xingchun Li, Ying Zhang, Xiangping Wang, Miaomiao Shi, Yong Zheng, Liang‐Dong Guo, Dianxiang Zhang
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2018.02922

Occurrence and Fate of Ultramicrobacteria in a Full-Scale Drinking Water Treatment Plant
Cited by: 8
Author(s): Jie Liu, Renxin Zhao, Jiayu Zhang, Guijuan Zhang, Ke Yu, Xiaoyan Li, Bing Li
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.5567

Predicting species occurrences with habitat network models
Cited by: 1
Author(s): Damian O. Ortiz‐Rodríguez, Antoine Guisan, Rolf Holderegger, Maarten J. van Strien
Software Mentions: 4
Published: almost 7 years ago

10.3389/fcimb.2018.00187

Staphylococcus aureus CC30 Lineage and Absence of sed,j,r-Harboring Plasmid Predict Embolism in Infective Endocarditis
Cited by: 3
Author(s): Jean-Philippe Rasigade, Amélie Leclère, François Alla, Adrien Tessier, Michèle Bes, Catherine Lechiche, Véronique Vernet-Garnier, Cédric Laouénan, François Vandenesch, Catherine Leport
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2021.726923

Genome-Resolved Metagenomics of the Chicken Gut Microbiome
Cited by: 25
Author(s): Maia Segura-Wang, Nikolaus Grabner, Andreas Koestelbauer, Viviana Klose, Mahdi Ghanbari
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpsyg.2018.02252

Orthographic Networks in the Developing Mental Lexicon. Insights From Graph Theory and Implications for the Study of Language Processing
Cited by: 5
Author(s): Jutta Trautwein, Sascha Schroeder
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2021.657471

Comparative Genomics and Environmental Distribution of Large dsDNA Viruses in the Family Asfarviridae
Cited by: 15
Author(s): Sangita Karki, Mohammad Moniruzzaman, Frank O. Aylward
Software Mentions: 4
Published: over 5 years ago

10.1111/1462-2920.13463

Pediatric obesity is associated with an altered gut microbiota and discordant shifts in <scp>F</scp>irmicutes populations
Cited by: 286
Author(s): Alessandra Riva, Francesca Borgo, Carlotta Lassandro, Elvira Verduci, Giulia Morace, Elisa Borghi, David Berry
Software Mentions: 4
Published: almost 10 years ago

10.1038/s42003-020-01636-3

Single-cell transcriptomics following ischemic injury identifies a role for B2M in cardiac repair
Cited by: 39
Author(s): Bas Molenaar, Louk T. Timmer, Marjolein Droog, Ilaria Perini, Daniëlle Versteeg, Lieneke Kooijman, Jantine Monshouwer-Kloots, Hesther de Ruiter, Monika M Gladka, Eva van Rooij
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-02210-1

The power and promise of genetic mapping from Plasmodium falciparum crosses utilizing human liver-chimeric mice
Cited by: 10
Author(s): Katrina A. Button-Simons, Sudhir Kumar, Nelly Carmago, Haile, Catherine Jett, Lisa A. Checkley, Spencer Y. Kennedy, Richard S. Pinapati, Douglas A. Shoue, Marina McDew-White, X Li, François Nosten, Stefan H. I. Kappe, Jeanne Romero‐Severson, Ferdig, Scott J. Emrich, Ashley M. Vaughan, Ian H. Cheeseman
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.580363

Compositions and Co-occurrence Patterns of Bacterial Communities Associated With Polymer- and ASP-Flooded Petroleum Reservoir Blocks
Cited by: 6
Author(s): Guoling Ren, Jinlong Wang, Lei Qu, Wei Li, Min Hu, Lihong Bian, Yiting Zhang, Jing Liu, Xumou Dou, Xinhong Chen, Lulu Bai, Yue Li
Software Mentions: 4
Published: over 5 years ago

10.1186/s12918-017-0412-6

Detection of statistically significant network changes in complex biological networks
Cited by: 27
Author(s): Raghvendra Mall, Luigi Cerulo, Halima Bensmail, Antonio Iavarone, Michele Ceccarelli
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0254852

Ward-level factors associated with methicillin-resistant Staphylococcus aureus acquisition–an electronic medical records study in Singapore
Cited by: 2
Author(s): Zaw Tun, Dale Fisher, Sharon Salmon, Clarence C. Tam
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0028646

RegnANN: Reverse Engineering Gene Networks Using Artificial Neural Networks
Cited by: 10
Author(s): Marco Grimaldi, Roberto Visintainer, Giuseppe Jurman
Software Mentions: 4
Published: over 14 years ago

10.3389/fmicb.2020.00158

Distinct Assembly Mechanisms Underlie Similar Biogeographic Patterns of Rare and Abundant Bacterioplankton in Cascade Reservoirs of a Large River
Cited by: 31
Author(s): Carlos Juan, Peifang Wang, Chao Wang, Xun Wang, Lingzhan Miao, Sheng Liu, Qiusheng Yuan, Shenghao Sun
Software Mentions: 4
Published: over 6 years ago

10.1016/j.csbj.2017.01.001

Detection of Side Chain Rearrangements Mediating the Motions of Transmembrane Helices in Molecular Dynamics Simulations of G Protein-Coupled Receptors
Cited by: 14
Author(s): Zied Gaieb, Dimitrios Morikis
Software Mentions: 4
Published: over 9 years ago

10.3389/fcimb.2020.608020

Investigating Major Recurring Campylobacter jejuni Lineages in Luxembourg Using Four Core or Whole Genome Sequencing Typing Schemes
Cited by: 12
Author(s): Morgane Nennig, Ann-Katrin Llarena, Malte Herold, Joël Mossong, Christian Penny, Serge Losch, Odile Tresse, Catherine Ragimbeau
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0194656

Social network cohesion in school classes promotes prosocial behavior
Cited by: 31
Author(s): Wouter van den Bos, Eveline A. Crone, Rosa Meuwese, Berna Güroğlu
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-74798-z

Epigenetic alterations in skin homing CD4+CLA+ T cells of atopic dermatitis patients
Cited by: 19
Author(s): Nathalie Acevedo, Rui Benfeitas, Shintaro Katayama, Sören Bruhn, Ann‐Catrin Andersson, Gustav Wikberg, Lena Lundeberg, Jessica M. Lindvall, Dario Greco, Juha Kere, Cilla Söderhäll, Annika Scheynius
Software Mentions: 4
Published: almost 6 years ago

10.1534/g3.120.401545

Genome-Wide Screen for Context-Dependent Tumor Suppressors Identified Using in Vivo Models for Neoplasia in Drosophila
Cited by: 3
Author(s): Casper Groth, Pooja Vaid, Aditi S. Khatpe, Nelchi Prashali, Avantika Ahiya, Diāna Andrējeva, Madhumita Chakladar, Sanket Nagarkar, Rachel Paul, Devaki A. Kelkar, Teresa Eichenlaub, Héctor Herranz, T.S. Sridhar, Stephen M. Cohen, L. S. Shashidhara
Software Mentions: 4
Published: almost 6 years ago

10.3390/ani10112123

Social Network Analysis of Agonistic Behaviour and Its Association with Economically Important Traits in Pigs
Cited by: 8
Author(s): Saif Agha, E. Fábrega, Raquel Quintanilla, Juan Pablo Sánchez
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0231832

Abundance, density, and social structure of African forest elephants (Loxodonta cyclotis) in a human-modified landscape in southwestern Gabon
Cited by: 4
Author(s): Colin M. Brand, Mireille Johnson, Lillian D. Parker, Jesús E. Maldonado, Lisa Körte, Hadrien Vanthomme, Alfonso Alonso, María José Ruiz‐López, Caitlin Wells, Nelson Ting
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0156807

Pyrosequencing Unveils Cystic Fibrosis Lung Microbiome Differences Associated with a Severe Lung Function Decline
Cited by: 23
Author(s): Giovanni Bacci, Patrizia Paganin, Loredana Lopez, Chiara Vanni, Claudia Dalmastri, Cristina Cantale, Loretta Daddiego, Gaetano Perrotta, Daniela Dolce, Patrizia Morelli, Vanessa Tuccio Guarna Assanti, A. De Alessandri, Ersilia Fiscarelli, Giovanni Taccetti, Vincenzina Lucidi, Annamaria Bevivino, Alessio Mengoni
Software Mentions: 4
Published: about 10 years ago

10.1186/1471-2164-14-728

Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivumL.)
Cited by: 80
Author(s): Karl G. Kugler, Gerald Siegwart, Thomas Nußbaumer, Christian Ametz, Manuel Spannagl, Barbara Steiner, Marc Lemmens, Klaus Mayer, Hermann Buerstmayr, Wolfgang Schweiger
Software Mentions: 4
Published: almost 13 years ago

10.1038/s41598-020-61288-5

Forecasting risk gene discovery in autism with machine learning and genome-scale data
Cited by: 21
Author(s): Leo Brueggeman, Tanner Koomar, Jacob J. Michaelson
Software Mentions: 4
Published: over 6 years ago

10.3389/fcell.2019.00082

Transcriptome Analysis of Small Molecule–Mediated Astrocyte-to-Neuron Reprogramming
Cited by: 30
Author(s): Xin Ning, Jiu Chao Yin, Gong Chen
Software Mentions: 4
Published: about 7 years ago

10.1016/j.jmb.2014.04.026

SuSPect: Enhanced Prediction of Single Amino Acid Variant (SAV) Phenotype Using Network Features
Cited by: 181
Author(s): Christopher M. Yates, Ioannis Filippis, Lawrence A. Kelley, Michael J.E. Sternberg
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0249839

A targeted e-learning approach for keeping universities open during the COVID-19 pandemic while reducing student physical interactions
Cited by: 19
Author(s): Sing Chen Yeo, Clin K Y Lai, Jacinda Tan, Joshua J. Gooley
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-75259-3

Decrease in social cohesion in a colonial seabird under a perturbation regime
Cited by: 6
Author(s): Meritxell Genovart, Olivier Giménez, Albert Bertolero, Rémi Choquet, Daniel Oró, Roger Pradel
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2164-16-S5-S2

Integrative network-based approach identifies key genetic elements in breast invasive carcinoma
Cited by: 27
Author(s): Mohamed Hamed, Christian Spaniol, Alexander Zapp, Volkhard Helms
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0230941

Demarcating geographic regions using community detection in commuting networks with significant self-loops
Cited by: 14
Author(s): Mark He, Joseph Glasser, Nathaniel Pritchard, Shankar Bhamidi, Nikhil Kaza
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0122309

Module-Based Association Analysis for Omics Data with Network Structure
Cited by: 5
Author(s): Zhi Wang, Arnab Maity, Chuhsing Kate Hsiao, Deepak Voora, Rima Kaddurah‐Daouk, Jung Ying Tzeng
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0211546

Factors influencing sedentary behaviour: A system based analysis using Bayesian networks within DEDIPAC
Cited by: 23
Author(s): Christoph Buck, Anne Loyen, Ronja Foraita, Jelle Van Cauwenberg, Marieke De Craemer, Ciarán MacDonncha, Jean‐Michel Oppert, Johannes Brug, Nanna Lien, Greet Cardon, Iris Pigeot, Sébastien Chastin
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-81507-x

Multiple bacteria associated with the more dysbiotic genitourinary microbiomes in patients with type 2 diabetes mellitus
Cited by: 6
Author(s): Hua Zha, Fengping Liu, Zongxin Ling, Kevin Chang, Jiezuan Yang, Lanjuan Li
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0252471

Influence of number of individuals and observations per individual on a model of community structure
Cited by: 4
Author(s): Julia Sunga, Quinn M. R. Webber, Hugh G. Broders
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2017.02559

Patterns and Drivers of Vertical Distribution of the Ciliate Community from the Surface to the Abyssopelagic Zone in the Western Pacific Ocean
Cited by: 32
Author(s): Feng Zhao, Sabine Filker, Kuidong Xu, Pingping Huang, Shan Zheng
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0123082

Genomic Heterogeneity of Osteosarcoma - Shift from Single Candidates to Functional Modules
Cited by: 27
Author(s): Kathrin Poos, Jan Smida, Doris Maugg, Gertrud Eckstein, Daniel Baumhoer, Michaela Nathrath, Eberhard Korsching
Software Mentions: 4
Published: over 11 years ago

10.1186/s12870-017-1062-y

Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis
Cited by: 46
Author(s): Elisabeth Georgii, Ming Jin, Jin Zhao, Basem Kanawati, Philippe Schmitt‐Kopplin, Andreas Albert, Jana Barbro Winkler, Anton R. Schäffner
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0165987

Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons
Cited by: 67
Author(s): Hirokazu Toju, Osamu Kishida, Noboru Katayama, Kentaro Takagi
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0123569

XomAnnotate: Analysis of Heterogeneous and Complex Exome- A Step towards Translational Medicine
Cited by: 5
Author(s): Asoke K. Talukder, Shashidhar Ravishankar, Krittika Sasmal, Santhosh Gandham, Jyothsna Prabhukumar, Prahalad Achutharao, Debmalya Barh, Francesco Blasi
Software Mentions: 4
Published: over 11 years ago

10.1186/s12864-020-07148-y

Analysing the meta-interaction between pathways by gene set topological impact analysis
Cited by: 2
Author(s): Yan Shu, Xu Chi, Xiao Chang, Mengliang Tian
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0202063

Cross-species alcohol dependence-associated gene networks: Co-analysis of mouse brain gene expression and human genome-wide association data
Cited by: 11
Author(s): Kristin M. Mignogna, Silviu‐Alin Bacanu, Brien P. Riley, Aaron R. Wolen, Michael F. Miles
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms22041591

Reciprocal Changes in miRNA Expression with Pigmentation and Decreased Proliferation Induced in Mouse B16F1 Melanoma Cells by l-Tyrosine and 5-Bromo-2′-Deoxyuridine
Cited by: 4
Author(s): Hernán Mauricio Rivera, Esther Natalia Muñoz, Daniel Osuna, Mauro Florez, Michael Carvajal, Luis Alberto Gómez
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-53966-w

Alteration of the aggregation and spatial organization of the vector of Chagas disease, Triatoma infestans, by the parasite Trypanosoma cruzi
Cited by: 8
Author(s): Stéphanie Depickère, Gonzalo Marcelo Ramírez-Ávila, Jean‐Louis Deneubourg
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0057780

Functional and Structural Neural Network Characterization of Serotonin Transporter Knockout Rats
Cited by: 15
Author(s): Kajo van der Marel, Judith R. Homberg, Willem M. Otte, Rick M. Dijkhuizen
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0041370

Identification of Catalytic Residues Using a Novel Feature that Integrates the Microenvironment and Geometrical Location Properties of Residues
Cited by: 12
Author(s): Lei Han, Yongjun Zhang, Jiangning Song, Ming S. Liu, Ziding Zhang
Software Mentions: 4
Published: about 14 years ago

10.1371/journal.pone.0070551

The Discrimination Power of Structural SuperIndices
Cited by: 3
Author(s): Matthias Dehmer, Abbe Mowshowitz
Software Mentions: 4
Published: about 13 years ago

10.1186/s12864-017-4242-0

Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria
Cited by: 16
Author(s): Franck Cerutti, Ludovic Mallet, Anaïs Painset, Claire Hoede, Annick Moisan, Christophe Bécavin, Manuel Duval, Olivier Dussurget, Pascale Cossart, Christine Gaspin, Hélène Chiapello
Software Mentions: 4
Published: over 8 years ago

10.2196/jmir.7347

Tracing the Potential Flow of Consumer Data: A Network Analysis of Prominent Health and Fitness Apps
Cited by: 39
Author(s): Quinn Grundy, Fabian Held, Lisa Bero
Software Mentions: 4
Published: about 9 years ago

10.1186/s12862-015-0298-0

A Boolean gene regulatory model of heterosis and speciation
Cited by: 8
Author(s): Peter M. F. Emmrich, Hannah Roberts, Véra Pancaldi
Software Mentions: 4
Published: over 11 years ago

10.2196/10942

Estimating Determinants of Attrition in Eating Disorder Communities on Twitter: An Instrumental Variables Approach
Cited by: 6
Author(s): Tao Wang, Emmanouil Mentzakis, Markus Brede, Antonella Ianni
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-021-94724-1

A systematic comparison of community detection algorithms for measuring selective exposure in co-exposure networks
Cited by: 5
Author(s): Subhayan Mukerjee
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1002603

An Integrated Regulatory Network Reveals Pervasive Cross-Regulation among Transcription and Splicing Factors
Cited by: 15
Author(s): Idit Kosti, Predrag Radivojac, Yael Mandel-Gutfreund
Software Mentions: 4
Published: about 14 years ago

10.1371/journal.pcbi.1003808

SANTA: Quantifying the Functional Content of Molecular Networks
Cited by: 56
Author(s): Alex J. Cornish, Florian Markowetz
Software Mentions: 4
Published: almost 12 years ago

10.1186/s12862-020-01690-9

Genotypic similarities among the parthenogenetic Darevskia rock lizards with different hybrid origins
Cited by: 9
Author(s): David Tarkhnishvili, Alexey Yanchukov, Mehmet Kürşat Şahin, Mariam Gabelaia, Marine Murtskhvaladze, Kamίl Candan, Eduard Galoyan, Marine Arakelyan, Giorgi Iankoshvili, Yusuf Kumlutaş, Çetίn Ilgaz, Ferhat Matur, Faruk Çolak, Meriç Erdolu, Sofiko Kurdadze, Natia Barateli, Cort L. Anderson
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1008018

Visual perception of liquids: Insights from deep neural networks
Cited by: 11
Author(s): Jan Jaap R. van Assen, Shin’ya Nishida, Roland W. Fleming
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12885-020-06774-9

Sepsis-associated pathways segregate cancer groups
Cited by: 5
Author(s): Himanshu Tripathi, Samanwoy Mukhopadhyay, Saroj Kant Mohapatra
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1002223

Transcriptomic Coordination in the Human Metabolic Network Reveals Links between n-3 Fat Intake, Adipose Tissue Gene Expression and Metabolic Health
Cited by: 35
Author(s): Melissa J. Morine, Audrey C. Tierney, Ben van Ommen, Hannelore Daniel, Sinéad Toomey, Ingrid M.F. Gjelstad, Isobel Claire Gormley, Pablo Pérez-Martı́nez, Christian A. Drevon, José López‐Miranda, Helen M. Roche
Software Mentions: 4
Published: over 14 years ago

10.1038/s41398-019-0448-z

Co-expression network modeling identifies key long non-coding RNA and mRNA modules in altering molecular phenotype to develop stress-induced depression in rats
Cited by: 27
Author(s): Qingzhong Wang, Bhaskar Roy, Yogesh K. Dwivedi
Software Mentions: 4
Published: over 7 years ago

10.1038/s41398-019-0472-z

DLPFC transcriptome defines two molecular subtypes of schizophrenia
Cited by: 26
Author(s): Elijah F. W. Bowen, Jack L. Burgess, Richard Granger, Joel E. Kleinman, C. Harker Rhodes
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2020.618287

Niche Differentiation of Comammox Nitrospira in the Mudflat and Reclaimed Agricultural Soils Along the North Branch of Yangtze River Estuary
Cited by: 22
Author(s): Xinxin Wang, Lu Lu, Xue Zhou, Xiufeng Tang, Lu Kuang, Junhui Chen, Jun Shan, Huijie Lü, Hua Qin, Jonathan M. Adams, Baozhan Wang
Software Mentions: 4
Published: over 5 years ago

10.1080/22221751.2018.1563458

Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black women
Cited by: 22
Author(s): Liying Yang, Yuhan Hao, Jiyuan Hu, Dervla Kelly, Hui-Lin Li, Stuart M. Brown, Carley Tasker, Natalie Roche, Theresa L. Chang, Zhiheng Pei
Software Mentions: 4
Published: over 7 years ago

10.1038/s41398-020-0776-z

Elevated serum chemokine CCL22 levels in first-episode psychosis: associations with symptoms, peripheral immune state and in vivo brain glial cell function
Cited by: 14
Author(s): Heikki Laurikainen, Arja Vuorela, Anna Toivonen, Linnea Reinert-Hartwall, Kalevi Trontti, Maija Lindgren, Jaakko Keinänen, Teemu Mäntylä, Janina Paju, Tuula Ilonen, Reetta-Liina Armio, Maija Walta, Jouni Tuisku, Semi Helin, Päivi Marjamäki, Iiris Hovatta, Sebastian Therman, Outi Vaarala, Outi Linnaranta, Tuula Kieseppä, Raimo K. R. Salokangas, Jarno Honkanen, Jarmo Hietala, Jaana Suvisaari
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-017-02903-w

Evidence for mutual assessment in a wild primate
Cited by: 16
Author(s): Marcela E. Benítez, David J. Pappano, Jacinta C. Beehner, Thore J. Bergman
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-019-50224-x

Network-based method for drug target discovery at the isoform level
Cited by: 6
Author(s): Ma Jun, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Linna Liu, Peng Dai
Software Mentions: 4
Published: almost 7 years ago

10.1098/rsos.160820

Social associations between California sea lions influence the use of a novel foraging ground
Cited by: 25
Author(s): Zachary A. Schakner, Matthew B. Petelle, Mathew J. Tennis, Bjorn K. van der Leeuw, Robert T. Stansell, Daniel T. Blumstein
Software Mentions: 4
Published: about 9 years ago

10.1098/rsos.191806

Effects of trading networks on the risk of bovine tuberculosis incidents on cattle farms in Great Britain
Cited by: 13
Author(s): Helen R. Fielding, Trevelyan J. McKinley, Richard J. Delahay, Matthew J. Silk, Robbie A. McDonald
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-017-04300-9

Altered miRNA expression network in locus coeruleus of depressed suicide subjects
Cited by: 59
Author(s): Bhaskar Roy, Qingzhong Wang, M. Palkóvits, Gábor Faludi, Yogesh K. Dwivedi
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-017-15811-w

Disentangling the co-structure of multilayer interaction networks: degree distribution and module composition in two-layer bipartite networks
Cited by: 14
Author(s): Julia Astegiano, Florian Altermatt, François Massol
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-27172-z

Heterogeneity of interactions of microbial communities in regions of Taihu Lake with different nutrient loadings: A network analysis
Cited by: 32
Author(s): Xinyi Cao, Dayong Zhao, Huimin Xu, Rui Huang, Jin Zeng, Zhigang Yu
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-34127-x

Bacterial and fungal gut communities of Agrilus mali at different developmental stages and fed different diets
Cited by: 26
Author(s): Zhengqing Zhang, Shuo Jiao, Xiaohui Li, LI Meng-lou
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-24373-4

Social thermoregulation as a potential mechanism linking sociality and fitness: Barbary macaques with more social partners form larger huddles
Cited by: 39
Author(s): Liz A. D. Campbell, Patrick J. Tkaczynski, Julia Lehmann, Mohamed Mouna, Bonaventura Majolo
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-019-52433-w

Phonological network fluency identifies phonological restructuring through mental search
Cited by: 5
Author(s): Karl David Neergaard, Jin Luo, Chu‐Ren Huang
Software Mentions: 4
Published: over 6 years ago

10.1038/sdata.2016.56

Species interactions in occurrence data for a community of tick-transmitted pathogens
Cited by: 37
Author(s): Agustı́n Estrada-Peña, José de la Fuente
Software Mentions: 4
Published: almost 10 years ago

10.1038/s41598-017-09566-7

Comparison of musculoskeletal networks of the primate forelimb
Cited by: 13
Author(s): Júlia Molnár, Borja Esteve‐Altava, Campbell Rolian, Rui Diogo
Software Mentions: 4
Published: almost 9 years ago

10.1038/srep45823

Natural Scales in Geographical Patterns
Cited by: 11
Author(s): Telmo Menezes, Camille Roth
Software Mentions: 3
Published: over 9 years ago

10.1002/jrsm.1329

Automated methods to test connectedness and quantify indirectness of evidence in network meta‐analysis
Cited by: 12
Author(s): Howard Thom, Ian R. White, Nicky J Welton, Guobing Lu
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-03778-7

Ecological diversity and co-occurrence patterns of bacterial community through soil profile in response to long-term switchgrass cultivation
Cited by: 41
Author(s): Shenggen He, Lixiang Guo, Mengying Niu, Fuhong Miao, Shuo Jiao, Tianming Hu, M. I. E. Long
Software Mentions: 3
Published: about 9 years ago

10.1038/srep10540

Fractal features of soil particle size distribution in newly formed wetlands in the Yellow River Delta
Cited by: 29
Author(s): Junbao Yu, Xiaofei Lv, Ben Ma, Huifeng Wu, Siyao Du, Mo Zhou, Yanming Yang, Guoqi Han
Software Mentions: 3
Published: about 11 years ago

10.1038/s41598-018-33773-5

Functional eubacteria species along with trans-domain gut inhabitants favour dysgenic diversity in oxalate stone disease
Cited by: 12
Author(s): Mangesh V. Suryavanshi, Shrikant Bhute, Rahul P. Gune, Yogesh S. Shouche
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-06773-0

Linking the morphological and metabolomic response of Lactuca sativa L exposed to emerging contaminants using GC × GC-MS and chemometric tools
Cited by: 50
Author(s): Carlos Hurtado, Hadi Parastar, Víctor Matamoros, Benjamı́n Piña, Romà Tauler, Josep M. Bayona
Software Mentions: 3
Published: about 9 years ago

10.1038/srep26556

Network Signatures of IgG Immune Repertoires in Hepatitis B Associated Chronic Infection and Vaccination Responses
Cited by: 15
Author(s): Ya-Hui Chang, Hui-Chung Kuan, Tsung‐Hsin Hsieh, K. H., Chung-Hsiang Yang, Wei‐Bin Hsu, Shih‐Feng Tsai, Anne Chao, Hong-Hsing Liu
Software Mentions: 3
Published: about 10 years ago

10.1038/s41598-018-32020-1

Structural robustness of mammalian transcription factor networks reveals plasticity across development
Cited by: 3
Author(s): José Luis Caldú-Primo, Elena Álvarez-Buylla, José Dávila-Velderrain
Software Mentions: 3
Published: almost 8 years ago

10.1038/srep24926

Scaling in topological properties of brain networks
Cited by: 18
Author(s): Soibam Shyamchand Singh, Budhachandra Khundrakpam, Andrew Reid, John D. Lewis, Alan C. Evans, Romana Ishrat, Bharat Sharma, R. K. Brojen Singh
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-018-30845-4

Topological motifs populate complex networks through grouped attachment
Cited by: 4
Author(s): Jae Young Choi, Doheon Lee
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-29725-8

Fast Maximum Likelihood Estimation via Equilibrium Expectation for Large Network Data
Cited by: 20
Author(s): Maksym Byshkin, Alex Stivala, Antonietta Mira, Garry Robins, Alessandro Lomi
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-017-15598-w

Early diverging lineages within Cryptomycota and Chytridiomycota dominate the fungal communities in ice-covered lakes of the McMurdo Dry Valleys, Antarctica
Cited by: 62
Author(s): Keilor Rojas-Jiménez, Christian Wurzbacher, Elizabeth C. Bourne, Amy Chiuchiolo, John C. Priscu, Hans‐Peter Grossart
Software Mentions: 3
Published: over 8 years ago

10.1126/sciadv.aaw9724

Mating avoidance in female olive baboons ( Papio anubis ) infected by Treponema pallidum
Cited by: 23
Author(s): Filipa M. D. Paciência, Julie Rushmore, Idrissa S. Chuma, Iddi Lipende, Damien Caillaud, Sascha Knauf, Dietmar Zinner
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-017-17330-0

Identification of a gene signature for discriminating metastatic from primary melanoma using a molecular interaction network approach
Cited by: 31
Author(s): Rahul Metri, Abhilash Mohan, Jérémie Nsengimana, Joanna Poźniak, Carmen Molina‐París, Julia Newton-Bishop, D. Timothy Bishop, Nagasuma Chandra
Software Mentions: 3
Published: over 8 years ago

10.1098/rsos.200441

Suppression of the TGF-β pathway by a macrolide antibiotic decreases fibrotic responses by ocular fibroblasts in vitro
Cited by: 5
Author(s): Thomas Stahnke, Beata Gajda-Deryło, Anselm Jünemann, Oliver Stachs, Katharina A Sterenczak, Robert Ręjdak, Julia Beck, Ekkehard Schütz, Steffen Möller, Israel Barrantes, Gregor Warsow, Stephan Struckmann, Georg Fuellen
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-52023-w

Compartmentalized evolution of Bovine Viral Diarrhoea Virus type 2 in an immunotolerant persistently infected cow
Cited by: 7
Author(s): Barbara Colitti, Chiara Nogarol, Mario Giacobini, Maria Teresa Capucchio, Ilaria Biasato, Sergio Rosati, Luigi Bertolotti
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-48925-4

Network construction of gastric microbiome and organization of microbial modules associated with gastric carcinogenesis
Cited by: 17
Author(s): Chan Hyuk Park, Jae Gon Lee, Areum Lee, Chang Soo Eun, Dong Soo Han
Software Mentions: 3
Published: almost 7 years ago

10.1098/rsos.170148

Individual-level movement bias leads to the formation of higher-order social structure in a mobile group of baboons
Cited by: 16
Author(s): Tyler R. Bonnell, Parry M.R. Clarke, S. Peter Henzi, Louise Barrett
Software Mentions: 3
Published: about 9 years ago

10.1038/s41597-021-00880-4

A food web including parasites for kelp forests of the Santa Barbara Channel, California
Cited by: 6
Author(s): Dana N. Morton, Cristiana Y. Antonino, Farallon J. Broughton, Lauren N. Dykman, Armand M. Kuris, Kevin D. Lafferty
Software Mentions: 3
Published: over 5 years ago

10.1186/s13014-016-0672-0

Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks
Cited by: 37
Author(s): Agata Michna, Ulrike Schötz, Martin Selmansberger, Horst Zitzelsberger, Kirsten Lauber, Kristian Unger, Julia Heß
Software Mentions: 3
Published: about 10 years ago

10.1038/srep22095

Network centrality and seasonality interact to predict lice load in a social primate
Cited by: 64
Author(s): Julie Duboscq, Valéria Romano, Cédric Sueur, Andrew J. J. MacIntosh
Software Mentions: 3
Published: over 10 years ago

Projects: cran: igraph

Science Score: 100/100

Bonuses:

Papers Mentioning igraph 1,555