cran: igraph | Projects | Ecosyste.ms: Papers

10.1186/s12913-020-05173-x

Care coordination for severe mental health disorders: an analysis of healthcare provider patient-sharing networks and their association with quality of care in a French region
Cited by: 3
Author(s): Coralie Gandré, Laurent Beauguitte, Alexandre Lolivier, Magali Coldefy
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0232681

Network analysis of regional livestock trade in West Africa
Cited by: 24
Author(s): Valerie C. Valerio, Olivier Walther, M. Eilittä, Brahima Cissé, Rachata Muneepeerakul, Gregory A. Kiker
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0222016

Impact of care provider network characteristics on patient outcomes: Usage of social network analysis and a multi-scale community detection
Cited by: 13
Author(s): Mina Ostovari, Denny Yu
Software Mentions: 4
Published: about 5 years ago

10.1186/s12889-018-5588-1

Development and testing of a novel survey to assess Stakeholder-driven Community Diffusion of childhood obesity prevention efforts
Cited by: 26
Author(s): Ariella R. Korn, Erin Hennessy, Ross A. Hammond, Steven Allender, Matthew W. Gillman, Matt Kasman, Jaimie McGlashan, Lynne Millar, Brynle Owen, Mark C. Pachucki, Boyd Swinburn, Alison Tovar, Christina D. Economos
Software Mentions: 4
Published: over 6 years ago

10.3390/ani10010144

Characterization of Anaerobic Rumen Fungal Community Composition in Yak, Tibetan Sheep and Small Tail Han Sheep Grazing on the Qinghai-Tibetan Plateau
Cited by: 16
Author(s): Wei Guo, Weiwei Wang, Sisi Bi, Ruijun Long, Farman Ullah, Muhammad Shafiq, Mi Zhou, Ying Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0160791

Natural Cubic Spline Regression Modeling Followed by Dynamic Network Reconstruction for the Identification of Radiation-Sensitivity Gene Association Networks from Time-Course Transcriptome Data
Cited by: 31
Author(s): Agata Michna, Herbert Braselmann, Martin Selmansberger, Anne Dietz, Julia Heß, Maria Gomolka, Sabine Hornhardt, Nils Blüthgen, Horst Zitzelsberger, Kristian Unger
Software Mentions: 4
Published: over 8 years ago

10.3389/fpls.2020.00574

Decoding Gene Networks Modules That Explain the Recovery of Hymenoglossum cruentum Cav. After Extreme Desiccation
Cited by: 6
Author(s): Enrique Ostria‐Gallardo, Giovanni Larama, Graciela Berríos, Ana Fallard, Ana Gutiérrez-Moraga, Ingo Ensminger, Patrício Manque, Luisa Bascuñán‐Godoy, León A. Bravo
Software Mentions: 4
Published: over 4 years ago

10.3389/fpsyg.2019.02448

The Differential Role of Central and Bridge Symptoms in Deactivating Psychopathological Networks
Cited by: 37
Author(s): Daniel Castro, Filipa Ferreira, Inês de Castro, Ana Rita Rodrigues, Marta Correia, Josefina Ribeiro, Tiago Ferreira
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0026605

Leaders Are More Attractive: Birds with Bigger Yellow Breast Patches Are Followed by More Group-Mates in Foraging Groups
Cited by: 20
Author(s): Zoltán Tóth, Matteo Griggio
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0107629

Tracking Difference in Gene Expression in a Time-Course Experiment Using Gene Set Enrichment Analysis
Cited by: 4
Author(s): Pui Shan Wong, Michihiro Tanaka, Yoshihiko Sunaga, Masayoshi Tanaka, Tadatsugu Taniguchi, Tomoko Yoshino, Tsuyoshi Tanaka, Wataru Fujibuchi, Sachiyo Aburatani
Software Mentions: 4
Published: about 10 years ago

10.1002/ece3.5567

Predicting species occurrences with habitat network models
Cited by: 1
Author(s): Damian O. Ortiz‐Rodríguez, Antoine Guisan, Rolf Holderegger, Maarten J. van Strien
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-018-27172-z

Heterogeneity of interactions of microbial communities in regions of Taihu Lake with different nutrient loadings: A network analysis
Cited by: 32
Author(s): Xinyi Cao, Dayong Zhao, Huimin Xu, Rui Huang, Jin Zeng, Zhigang Yu
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.4664

Social structure contains epidemics and regulates individual roles in disease transmission in a group-living mammal
Cited by: 34
Author(s): Carly Rozins, Matthew J. Silk, Darren P. Croft, Richard J. Delahay, Dave Hodgson, Robbie A. McDonald, Nicola Weber, Mike Boots
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0115092

Mapping Interdisciplinary Fields: Efficiencies, Gaps and Redundancies in HIV/AIDS Research
Cited by: 23
Author(s): Jeffrey M. Adams, Ryan Light
Software Mentions: 4
Published: almost 10 years ago

10.1038/s41598-018-24373-4

Social thermoregulation as a potential mechanism linking sociality and fitness: Barbary macaques with more social partners form larger huddles
Cited by: 39
Author(s): Liz A. D. Campbell, Patrick J. Tkaczynski, Julia Lehmann, Mohamed Mouna, Bonaventura Majolo
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0255323

Gut microbiota alterations in response to sleep length among African-origin adults
Cited by: 13
Author(s): Na Fei, Candice Choo-Kang, Sirimon Reutrakul, Stephanie J. Crowley, Dale E. Rae, Kweku Bedu-Addo, Jacob Plange‐Rhule, Terrence Forrester, Estelle V. Lambert, Pascal Bovet, Walter Riesen, Wolfgang Korte, Amy Luke, Brian T. Layden, Jack A. Gilbert, Lara R. Dugas
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0084642

Predicting the Vulnerability of Great Apes to Disease: The Role of Superspreaders and Their Potential Vaccination
Cited by: 19
Author(s): Charlotte Carne, Stuart Semple, Helen C. Morrogh‐Bernard, Klaus Zuberbühler, Julia Lehmann
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0140577

How Many Parasites Species a Frog Might Have? Determinants of Parasite Diversity in South American Anurans
Cited by: 47
Author(s): Karla Magalhães Campião, Augusto Cesar de Aquino Ribas, Drausio Honório Morais, Reinaldo José da Silva, Luiz Eduardo Roland Tavares
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-017-15811-w

Disentangling the co-structure of multilayer interaction networks: degree distribution and module composition in two-layer bipartite networks
Cited by: 14
Author(s): Julia Astegiano, Florian Altermatt, François Massol
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0102188

Large-Scale Structure of a Network of Co-Occurring MeSH Terms: Statistical Analysis of Macroscopic Properties
Cited by: 21
Author(s): Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski
Software Mentions: 4
Published: over 10 years ago

10.1002/ece3.5453

Sea surface temperature dictates movement and habitat connectivity of Atlantic cod in a coastal fjord system
Cited by: 13
Author(s): Thomas A. B. Staveley, David Jacoby, Diana Perry, Felix van der Meijs, Ingvar Lagenfelt, Mikael Cremle, Martin Gullström
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-017-1731-8

sgnesR: An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters
Cited by: 9
Author(s): Shailesh Tripathi, Jason Lloyd-Price, André S. Ribeiro, Olli Yli‐Harja, Matthias Dehmer, Frank Emmert‐Streib
Software Mentions: 4
Published: over 7 years ago

10.1192/j.eurpsy.2021.2223

Feelings of worthlessness links depressive symptoms and parental stress: A network analysis during the COVID-19 pandemic
Cited by: 18
Author(s): Nora Skjerdingstad, Miriam S. Johnson, Sverre Urnes Johnson, Asle Hoffart, Omid V. Ebrahimi
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0208720

Modular structure in fish co-occurrence networks: A comparison across spatial scales and grouping methodologies
Cited by: 9
Author(s): Daniel J. McGarvey, Joseph A. Veech
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-017-09566-7

Comparison of musculoskeletal networks of the primate forelimb
Cited by: 13
Author(s): Júlia Molnár, Borja Esteve‐Altava, Campbell Rolian, Rui Diogo
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0231837

Effects of user behaviors on accumulation of social capital in an online social network
Cited by: 10
Author(s): Yuri Germanovich Rykov, Olessia Koltsova, Yadviga Sinyavskaya
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0214868

Reconstruction and inference of the Lactococcus lactis MG1363 gene co-expression network
Cited by: 5
Author(s): Jimmy Omony, Anne de Jong, Jan Kok, Sacha A. F. T. van Hijum
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-04300-9

Altered miRNA expression network in locus coeruleus of depressed suicide subjects
Cited by: 59
Author(s): Bhaskar Roy, Qingzhong Wang, M. Palkóvits, Gábor Faludi, Yogesh K. Dwivedi
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-02903-w

Evidence for mutual assessment in a wild primate
Cited by: 16
Author(s): Marcela E. Benítez, David J. Pappano, Jacinta C. Beehner, Thore J. Bergman
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0170293

Recent Themes in Social Networking Service Research
Cited by: 20
Author(s): John S. Liu, Mei Hsiu–Ching Ho, Louis Y. Y. Lu
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.5751

Using co‐occurrence network topology in assessing ecological stress in benthic macroinvertebrate communities
Cited by: 2
Author(s): Ariel Levi Simons, Raphael D. Mazor, Susanna Theroux
Software Mentions: 4
Published: about 5 years ago

10.1016/j.artmed.2020.101930

Using topological data analysis and pseudo time series to infer temporal phenotypes from electronic health records
Cited by: 14
Author(s): Arianna Dagliati, Nophar Geifman, Niels Peek, John H. Holmes, Lucia Sacchi, Riccardo Bellazzi, Seyed Erfan Sajjadi, Allan Tucker
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0197883

The regulatory ancestral network of surgical meshes
Cited by: 21
Author(s): Nasim Zargar, Andrew Carr
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0245409

Social survival: Humpback whales (Megaptera novaeangliae) use social structure to partition ecological niches within proposed critical habitat
Cited by: 3
Author(s): Janie Wray, Eric M. Keen, Éadin O’Mahony
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0235690

Heatmap centrality: A new measure to identify super-spreader nodes in scale-free networks
Cited by: 10
Author(s): Christina Durón
Software Mentions: 4
Published: over 4 years ago

10.3389/fpsyg.2020.00742

All Happy Emotions Are Alike but Every Unhappy Emotion Is Unhappy in Its Own Way: A Network Perspective to Academic Emotions.
Cited by: 3
Author(s): Markus Mattsson, Telle Hailikari, Anna Parpala
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12920-017-0250-9

Basal-like breast cancer: molecular profiles, clinical features and survival outcomes
Cited by: 64
Author(s): Heloisa Helena Milioli, Inna Tishchenko, Carlos Riveros, Regina Berretta, Pablo Moscato
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0019350

Deep Sequencing of Organ- and Stage-Specific microRNAs in the Evolutionarily Basal Insect Blattella germanica (L.) (Dictyoptera, Blattellidae)
Cited by: 82
Author(s): Alexandre S. Cristino, Erica D. Tanaka, Mercedes Rubio, María‐Dolors Piulachs, Xavier Bellés
Software Mentions: 4
Published: over 13 years ago

10.1111/acel.13073

Global metabolic profiling to model biological processes of aging in twins
Cited by: 29
Author(s): Bryan Bunning, Kévin Contrepois, Brittany Lee‐McMullen, Gopal Krishna Dhondalay, Wenming Zhang, Dana Tupa, Olivia Raeber, Manisha Desai, Kari Nadeau, M Snyder
Software Mentions: 4
Published: about 5 years ago

10.1038/sdata.2016.56

Species interactions in occurrence data for a community of tick-transmitted pathogens
Cited by: 37
Author(s): Agustı́n Estrada-Peña, José de la Fuente
Software Mentions: 4
Published: over 8 years ago

10.1186/s40793-020-00363-w

Reducing the arbitrary: fuzzy detection of microbial ecotones and ecosystems – focus on the pelagic environment
Cited by: 3
Author(s): Antoine Bagnaro, Federico Baltar, G. Brownstein, William G. Lee, Sergio E. Morales, Daniel W. Pritchard, Christopher D. Hepburn
Software Mentions: 4
Published: over 4 years ago

10.1111/1462-2920.13463

Pediatric obesity is associated with an altered gut microbiota and discordant shifts in <scp><i>F</i></scp><i>irmicutes</i> populations
Cited by: 286
Author(s): Alessandra Riva, Francesca Borgo, Carlotta Lassandro, Elvira Verduci, Giulia Morace, Elisa Borghi, David Berry
Software Mentions: 4
Published: over 8 years ago

10.3390/cancers13040851

Network Analysis Identifies Drug Targets and Small Molecules to Modulate Apoptosis Resistant Cancers
Cited by: 6
Author(s): Samreen Fathima, Swati Sinha, Sainitin Donakonda
Software Mentions: 4
Published: almost 4 years ago

10.1016/j.celrep.2020.107928

Diversification of DNA-Binding Specificity by Permissive and Specificity-Switching Mutations in the ParB/Noc Protein Family
Cited by: 17
Author(s): Adam S. B. Jalal, Ngat T. Tran, Clare E. M. Stevenson, Elliot W. Chan, Rebecca Lo, Xiao Tan, Agnes Noy, David M. Lawson, Tung B. K. Le
Software Mentions: 4
Published: over 4 years ago

10.3390/e15114932

Dynamical Structure of a Traditional Amazonian Social Network
Cited by: 24
Author(s): Paul L. Hooper, Simon DeDeo, Ann E. Caldwell Hooper, Michael Gurven, Hillard Kaplan
Software Mentions: 4
Published: about 11 years ago

10.1002/ece3.5071

Space use and social association in a gregarious ungulate: Testing the conspecific attraction and resource dispersion hypotheses
Cited by: 36
Author(s): Mélissa Peignier, Quinn M. R. Webber, Erin L. Koen, Michel P. Laforge, Alec L. Robitaille, Eric Vander Wal
Software Mentions: 4
Published: over 5 years ago

10.1080/22221751.2018.1563458

Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black women
Cited by: 22
Author(s): Liying Yang, Yuhan Hao, Jiyuan Hu, Dervla Kelly, Hui-Lin Li, Stuart M. Brown, Carley Tasker, Natalie Roche, Theresa L. Chang, Zhiheng Pei
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12866-020-01827-2

Vital members in the gut microbiotas altered by two probiotic Bifidobacterium strains against liver damage in rats
Cited by: 8
Author(s): Hua Zha, Daiqiong Fang, Aimee L. van der Reis, Kevin Chang, Liya Yang, Jiao-Jiao Xie, Ding Shi, Qiaomai Xu, Yating Li
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2018.01201

Microbial Community Structure and Associations During a Marine Dinoflagellate Bloom
Cited by: 93
Author(s): Jin Zhou, Mindy L. Richlen, Taylor R. Sehein, David M. Kulis, Donald M. Anderson, Zhonghua Cai
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.00708

Antimicrobial Resistance Diversity Suggestive of Distinct Salmonella Typhimurium Sources or Selective Pressures in Food-Production Animals
Cited by: 24
Author(s): Kate C. Mellor, Liljana Petrovska, Nicholas R. Thomson, Kate Harris, S. Reid, Alison E. Mather
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.491425

Stream Microbial Community Structured by Trace Elements, Headwater Dispersal, and Large Reservoirs in Sub-Alpine and Urban Ecosystems
Cited by: 5
Author(s): Erin Jones, Natasha A. Griffin, Julia E. Kelso, Gregory T. Carling, Michelle A. Baker, Zachary T. Aanderud
Software Mentions: 4
Published: almost 4 years ago

10.3389/fneur.2020.00773

Computer Modeling of Clot Retrieval—Circle of Willis
Cited by: 6
Author(s): Thanh G. Phan, Henry Ma, Mayank Goyal, James Hilton, Matthew D. Sinnott, Velandai Srikanth, Richard Beare
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2016.01688

Systems Biomedicine of Rabies Delineates the Affected Signaling Pathways
Cited by: 19
Author(s): Sadegh Azimzadeh Jamalkandi, Sayed‐Hamidreza Mozhgani, Hamid Gholami Pourbadie, Mehdi Mirzaie, Farshid Noorbakhsh, Behrouz Vaziri, Alireza Gholami, Naser Ansari-Pour, Mohieddin Jafari
Software Mentions: 4
Published: about 8 years ago

10.1186/s12918-016-0313-0

XMRF: an R package to fit Markov Networks to high-throughput genetics data
Cited by: 18
Author(s): Ying-Wooi Wan, Genevera I. Allen, Yulia Baker, Eunho Yang, Pradeep Ravikumar, Matthew L. Anderson, Zhandong Liu
Software Mentions: 4
Published: over 8 years ago

10.1093/infdis/jiz318

High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Cited by: 13
Author(s): Sarah Mollerup, Maria E. Asplund, Jens Friis-Nielsen, Kristín Rós Kjartansdóttir, Helena Fridholm, Thomas Arn Hansen, José Alejandro Romero Herrera, Christopher J. Barnes, Randi Holm Jensen, Stine Raith Richter, Ida Broman Nielsen, Carlotta Pietroni, David E. Alquezar‐Planas, Alba Rey‐Iglesia, Pernille V. S. Olsen, Ewa Rajpert De Meyts, Line Groth‐Pedersen, Christian von Buchwald, David Hebbelstrup Jensen, Robert Gniadecki, Estrid Høgdall, Jill Levin Langhoff, Imre Pete, Ildikó Vereczkey, Zsolt Baranyai, Karen Dybkær, Hans Erik Johnsen, Torben Steiniche, Peter Hokland, Jacob Rosenberg, Ulrik Baandrup, Thomas Sicheritz-Pontén, Eske Willerslev, Søren Brunak, Ole Lund, Tobias Mourier, Lasse Vinner, Jose M. G. Izarzugaza, Lars Peter Nielsen, Anders J. Hansen
Software Mentions: 4
Published: over 5 years ago

10.1186/s40425-018-0464-1

A novel anti-HER2 anthracycline-based antibody-drug conjugate induces adaptive anti-tumor immunity and potentiates PD-1 blockade in breast cancer
Cited by: 63
Author(s): Lucia D’Amico, Ulrike Menzel, Michael Prummer, Philipp Müller, Mélanie Buchi, Abhishek S. Kashyap, Ulrike Haessler, Alexander Yermanos, Rémy Gébleux, Manfred Briendl, Tamara Hell, Fabian I. Wolter, Roger R. Beerli, Iva Truxová, Radek Špíšek, Tatjana Vlajnic, Ulf Grawunder, Sai T. Reddy, Alfred Zippelius
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12917-018-1406-3

Dynamic network measures reveal the impact of cattle markets and alpine summering on the risk of epidemic outbreaks in the Swiss cattle population
Cited by: 21
Author(s): Beatriz Vidondo, Bernhard Voelkl
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.579290

Spatiotemporal Patterns in Diversity and Assembly Process of Marine Protist Communities of the Changjiang (Yangtze River) Plume and Its Adjacent Waters
Cited by: 8
Author(s): Xin Guo, Lianghuan Wu, Lingfeng Huang
Software Mentions: 4
Published: about 4 years ago

10.1186/1471-2105-13-294

Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction
Cited by: 25
Author(s): Antonio M. Mora, Ian Donaldson
Software Mentions: 4
Published: about 12 years ago

10.3758/s13428-018-1186-5

spreadr: An R package to simulate spreading activation in a network
Cited by: 24
Author(s): Cynthia S. Q. Siew
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.526898

Seasonal Changes in Pinus tabuliformis Root-Associated Fungal Microbiota Drive N and P Cycling in Terrestrial Ecosystem
Cited by: 12
Author(s): Haihua Wang, Honglong Chu, Qing Dou, Huijin Feng, Ming Tang, Shuoxin Zhang, Chunyan Wang
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2020.575207

Fungal Communities in Sediments Along a Depth Gradient in the Eastern Tropical Pacific
Cited by: 9
Author(s): Keilor Rojas‐Jimenez, Hans‐Peter Grossart, Erik E. Cordes, Jorge Cortés
Software Mentions: 4
Published: about 4 years ago

10.3390/ijerph18094836

Categorizing IQOS-Related Twitter Discussions
Cited by: 5
Author(s): Joshua Barker, Julia Vassey, Julia Chen-Sankey, Jon-Patrick Allem, Tess Boley Cruz, Jennifer B. Unger
Software Mentions: 4
Published: over 3 years ago

10.6026/97320630013025

Elucidation of the sequential transcriptional activity in Escherichia coli using time-series RNA-seq data
Cited by: 1
Author(s): Pui Shan Wong, Kosuke Tashiro, Satoru Kuhara, Sachiyo Aburatani
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2020.607396

Distinct Microbial Communities in Adjacent Rock and Soil Substrates on a High Arctic Polar Desert
Cited by: 16
Author(s): Yong‐Hoe Choe, Min‐Cheol Kim, Yoo Kyung Lee
Software Mentions: 4
Published: almost 4 years ago

10.1242/bio.049809

Single cell force profiling of human myofibroblasts reveals a biophysical spectrum of cell states
Cited by: 6
Author(s): T. B. Layton, Lynn M. Williams, Huw Colin‐York, Fiona E. McCann, Marisa Cabrita, Marc Feldmann, Cameron Brown, Weilin Xie, Marco Fritzsche, Dominic Furniss, Jagdeep Nanchahal
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13059-018-1426-0

Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing
Cited by: 79
Author(s): Xiaoping Han, Haide Chen, Daosheng Huang, Huidong Chen, Lijiang Fei, Chen Cheng, He Huang, Guo Cheng Yuan, Guoji Guo
Software Mentions: 4
Published: over 6 years ago

10.1074/jbc.RA119.011010

Synergistic mutations in soluble guanylyl cyclase (sGC) reveal a key role for interfacial regions in the sGC activation mechanism
Cited by: 8
Author(s): Kenneth C Childers, Xin‐Qiu Yao, Sam Giannakoulias, Joshua Amason, Donald Hamelberg, Elsa D. Garcin
Software Mentions: 4
Published: about 5 years ago

10.3390/genes11010031

Transcriptome-Wide Analysis Reveals Key DEGs in Flower Color Regulation of Hosta plantaginea (Lam.) Aschers
Cited by: 7
Author(s): Jingying Zhang, Changhai Sui, Yanli Wang, Shuying Liu, Huimin Liu, Zhengren Zhang, Liu Hong-zhang
Software Mentions: 4
Published: almost 5 years ago

10.1016/j.heliyon.2021.e07748

Massive surge of mRNA expression of clonal B-cell receptor in patients with COVID-19
Cited by: 4
Author(s): Yohei Funakoshi, Goh Ohji, Kimikazu Yakushijin, Kei Ebisawa, Yu Arakawa, Jun Saegusa, Hidenari Matsumoto, Tatsuya Imanishi, Eriko Fukuda, Takaji Matsutani, Yasuko Mori, Kentaro Iwata, Hironobu Minami
Software Mentions: 4
Published: over 3 years ago

10.1186/s13012-016-0499-y

Forging a link between mentoring and collaboration: a new training model for implementation science
Cited by: 35
Author(s): Douglas A. Luke, Ana A. Baumann, Bobbi J. Carothers, John Landsverk, Enola K. Proctor
Software Mentions: 4
Published: about 8 years ago

10.3390/insects10080252

Vertical and Horizontal Trophic Networks in the Aroid-Infesting Insect Community of Los Tuxtlas Biosphere Reserve, Mexico
Cited by: 2
Author(s): Guadalupe Amancio, Armando Aguirre‐Jaimes, Vicente Hernández-Ortíz, Roger Guevara, Maurício Quesada
Software Mentions: 4
Published: over 5 years ago

10.1016/j.gpb.2016.04.004

Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
Cited by: 38
Author(s): Hideki Uosaki, Y-h. Taguchi
Software Mentions: 4
Published: over 8 years ago

10.1186/2043-9113-1-34

Profiling the human response to physical exercise: a computational strategy for the identification and kinetic analysis of metabolic biomarkers
Cited by: 36
Author(s): Michael Netzer, Klaus M. Weinberger, Michael Handler, Michael Seger, Xuekun Fang, Karl G. Kugler, Armin Graber, Christian Baumgartner
Software Mentions: 4
Published: almost 14 years ago

10.1016/j.gpb.2018.08.002

PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System
Cited by: 19
Author(s): Huan Qi, Zhenhong Jiang, Kang Zhang, Shiping Yang, Fei He, Ziding Zhang
Software Mentions: 4
Published: over 6 years ago

10.1186/s13059-020-01964-x

Longitudinal survey of microbiome associated with particulate matter in a megacity
Cited by: 55
Author(s): Nan Qin, Peng Liang, Chunyan Wu, Guanqun Wang, Qian Xu, Xiong Xiao, Tingting Wang, Moreno Zolfo, Nicola Segata, Huanlong Qin, Rob Knight, Jack A. Gilbert, Ting Zhu
Software Mentions: 4
Published: over 4 years ago

10.3389/fvets.2021.611132

Livestock Network Analysis for Rhodesiense Human African Trypanosomiasis Control in Uganda
Cited by: 1
Author(s): Walter Okello, C. Amongi, Dennis Muhanguzi, Ewan T. MacLeod, Charles Waiswa, Alexandra Shaw, Susan C. Welburn
Software Mentions: 4
Published: over 3 years ago

10.1534/g3.120.401545

Genome-Wide Screen for Context-Dependent Tumor Suppressors Identified Using in Vivo Models for Neoplasia in Drosophila
Cited by: 3
Author(s): Casper Groth, Pooja Vaid, Aditi S. Khatpe, Nelchi Prashali, Avantika Ahiya, Diāna Andrējeva, Madhumita Chakladar, Sanket Nagarkar, Rachel Paul, Devaki A. Kelkar, Teresa Eichenlaub, Héctor Herranz, T.S. Sridhar, Stephen M. Cohen, L. S. Shashidhara
Software Mentions: 4
Published: about 4 years ago

10.3390/jcm8101663

Revealing Associations between Diagnosis Patterns and Acupoint Prescriptions Using Medical Data Extracted from Case Reports
Cited by: 13
Author(s): Cheol Han Kim, Da Eun Yoon, Ye-Seul Lee, Won Jai Jung, Joo Hee Kim, Younbyoung Chae
Software Mentions: 4
Published: about 5 years ago

10.1098/rspb.2018.0023

Collective ritual and social support networks in rural South India
Cited by: 23
Author(s): Eleanor A. Power
Software Mentions: 3
Published: over 6 years ago

10.1093/gbe/evw077

“Every Gene Is Everywhere but the Environment Selects”: Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis
Cited by: 80
Author(s): Marco Fondi, Antti Karkman, Manu Tamminen, Emanuele Bosi, Marko Virta, Renato Fani, Eric J. Alm, James O. McInerney
Software Mentions: 3
Published: over 8 years ago

10.1093/gbe/evy042

Conservation of Sex-Linked Markers among Conspecific Populations of a Viviparous Skink, Niveoscincus ocellatus, Exhibiting Genetic and Temperature-Dependent Sex Determination
Cited by: 38
Author(s): Peta Hill, Christopher P. Burridge, Tariq Ezaz, Erik Wapstra
Software Mentions: 3
Published: over 6 years ago

10.1186/s13059-015-0627-z

Evaluating intra- and inter-individual variation in the human placental transcriptome
Cited by: 45
Author(s): David A. Hughes, Martin Kircher, Zhisong He, Songlin Guo, Genevieve Fairbrother, Carlos S. Moreno, Philipp Khaitovich, Mark Stoneking
Software Mentions: 3
Published: over 9 years ago

10.1186/s13073-021-00874-2

Human breast microbiome correlates with prognostic features and immunological signatures in breast cancer
Cited by: 85
Author(s): Alice Tzeng, Naseer Sangwan, Margaret Jia, Chin-Chih Liu, Karen Keslar, Erinn Downs‐Kelly, Robert L. Fairchild, Zahraa Al‐Hilli, Stephen R. Grobmyer, Charis Eng
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-015-0592-6

BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies
Cited by: 110
Author(s): Ke Yuan, Thomas Sakoparnig, Florian Markowetz, Niko Beerenwinkel
Software Mentions: 3
Published: almost 10 years ago

10.1016/j.gpb.2018.01.001

Comparative Analysis of Human Genes Frequently and Occasionally Regulated by m 6 A Modification
Cited by: 3
Author(s): Yuan Zhou, Qinghua Cui
Software Mentions: 3
Published: over 6 years ago

10.1016/j.gpb.2019.09.004

Machine Learning to Detect Alzheimer’s Disease from Circulating Non-coding RNAs
Cited by: 63
Author(s): Nicole Ludwig, Tobias Fehlmann, Fabian Kern, M. Gogol, Walter Maetzler, Stephanie Deutscher, Simone Gurlit, Claudia Schulte, Anna‐Katharina von Thaler, Christian Deuschle, Florian Metzger, Daniela Berg, Ulrike Suenkel, Verena Keller, Christina Backes, Hans‐Peter Lenhof, Eckart Meese
Software Mentions: 3
Published: over 5 years ago

10.1007/s11357-020-00195-z

Nursing homes and the elderly regarding the COVID-19 pandemic: situation report from Hungary
Cited by: 37
Author(s): Gábor Kemenesi, László Kornya, Gábor Endre Tóth, Kornélia Kurucz, Safia Zeghbib, B Somogyi, Viktor Zöldi, Péter Urbán, Róbert Herczeg, Ferenc Jakab
Software Mentions: 3
Published: over 4 years ago

10.1007/s12263-014-0439-x

White adipose tissue reference network: a knowledge resource for exploring health-relevant relations
Cited by: 10
Author(s): Thomas Kelder, Georg Summer, Martien P. M. Caspers, Evert M. van Schothorst, Jaap Keijer, Loes P. M. Duivenvoorde, К. Schimrigk, Anja Voigt, Laura Bohnert, Catalina Picó, M. Luisa Bonet, A. Dembińska-Kieć, Małgorzata Malczewska-Malec, Beata Kieć‐Wilk, Josep Maria del Bas, Antoni Caimari, Lluı́s Arola, Marjan van Erk, Ben van Ommen, Marijana Radonjić
Software Mentions: 3
Published: almost 10 years ago

10.1007/s12263-014-0408-4

Genetic associations with micronutrient levels identified in immune and gastrointestinal networks
Cited by: 12
Author(s): Melissa J. Morine, Jacqueline Pontes Monteiro, Carolyn Wise, Candee H. Teitel, Lisa Pence, Anna-leila Williams, Baitang Ning, Beverly McCabe‐Sellers, Catherine M. Champagne, J. Rick Turner, Beatrice Shelby, Margaret L. Bogle, Richard D. Beger, Corrado Priami, Jim Kaput
Software Mentions: 3
Published: over 10 years ago

10.3390/genes12030367

Multivariate Analysis Identifies Eight Novel Loci Associated with Meat Productivity Traits in Sheep
Cited by: 5
Author(s): Alexander S. Zlobin, Pavel S. Nikulin, Н. А. Волкова, N. A. Zinovieva, Б. С. Иолчиев, В. А. Багиров, П. М. Бородин, Т. И. Аксенович, Yakov A. Tsepilov
Software Mentions: 3
Published: over 3 years ago

10.1007/s00251-017-1051-1

Signatures of historical selection on MHC reveal different selection patterns in the moor frog (Rana arvalis)
Cited by: 15
Author(s): Maria Cortázar‐Chinarro, Yvonne Meyer‐Lucht, Anssi Laurila, Jacob Höglund
Software Mentions: 3
Published: almost 7 years ago

10.1172/jci.insight.140028

Identification of antigen-specific TCR sequences based on biological and statistical enrichment in unselected individuals
Cited by: 9
Author(s): Neal Smith, Bert Ruiter, Yamini Virkud, Ang A. Tu, Brinda Monian, James Moon, J. Christopher Love, Wayne Shreffler
Software Mentions: 3
Published: over 3 years ago

10.1200/CCI.17.00079

Overcoming the Straw Man Effect in Oncology: Visualization and Ranking of Chemotherapy Regimens Using an Information Theoretic Approach
Cited by: 1
Author(s): Jeremy L. Warner, Peter Yang, Gil Alterovitz
Software Mentions: 3
Published: about 7 years ago

10.1128/JB.00245-17

Polyvalent Proteins, a Pervasive Theme in the Intergenomic Biological Conflicts of Bacteriophages and Conjugative Elements
Cited by: 28
Author(s): Lakshminarayan M. Iyer, A. Maxwell Burroughs, Swadha Anand, Robson Francisco de Souza, L. Aravind
Software Mentions: 3
Published: over 7 years ago

10.3390/genes9110519

mully: An R Package to Create, Modify and Visualize Multilayered Graphs
Cited by: 12
Author(s): Zaynab Hammoud, Frank Krämer
Software Mentions: 3
Published: about 6 years ago

10.1021/acs.jctc.0c01308

Reconstruction of ARNT PAS-B Unfolding Pathways by Steered Molecular Dynamics and Artificial Neural Networks
Cited by: 12
Author(s): Stefano Motta, Alessandro Pandini, Arianna Fornili, Laura Bonati
Software Mentions: 3
Published: over 3 years ago

10.1534/g3.119.400972

Network Analysis of Linkage Disequilibrium Reveals Genome Architecture in Chum Salmon
Cited by: 21
Author(s): Garrett J. McKinney, Megan V. McPhee, Carita E. Pascal, James E. Seeb, Lisa W. Seeb
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.ppat.1001074

Global Genotype-Phenotype Correlations in Pseudomonas aeruginosa
Cited by: 11
Author(s): Claudia Pommerenke, Mathias Müsken, Tanja Becker, Andreas Dötsch, Frank Klawonn, Susanne Häußler
Software Mentions: 3
Published: about 14 years ago

10.1371/journal.ppat.1003403

The Escherichia coli Phosphotyrosine Proteome Relates to Core Pathways and Virulence
Cited by: 65
Author(s): Anne Marie Hansen, Raghothama Chaerkady, Jyoti Sharma, J. Javier Díaz-Mejía, Nidhi Tyagi, Santosh Renuse, Harrys K.C. Jacob, Sneha M. Pinto, Nandini A. Sahasrabuddhe, Min‐Sik Kim, Bernard Delanghe, Narayanaswamy Srinivasan, Andrew Emili, James B. Kaper, Akhilesh Pandey
Software Mentions: 3
Published: over 11 years ago

Projects: cran: igraph

Papers Mentioning igraph 1,555