Ecosyste.ms: Papers

10.1016/j.isci.2021.102846

Functional physiological phenotyping with functional mapping: A general framework to bridge the phenotype-genotype gap in plant physiology
Cited by: 5
Author(s): Arun K. Pandey, Libo Jiang, Menachem Moshelion, Sanbon Chaka Gosa, Ting Sun, Lin Qin, Rongling Wu, Pei Xu
Software Mentions: 2
Published: over 3 years ago

10.3390/v12101087

Network Controllability-Based Prioritization of Candidates for SARS-CoV-2 Drug Repositioning
Cited by: 4
Author(s): Emily E. Ackerman, Jason E. Shoemaker
Software Mentions: 2
Published: about 4 years ago

10.3390/v4123625

A Systems Biology Starter Kit for Arenaviruses
Cited by: 0
Author(s): Magali E. Droniou-Bonzom, Paula M. Cannon
Software Mentions: 2
Published: almost 12 years ago

10.1186/s13567-014-0110-y

Not all cows are epidemiologically equal: quantifying the risks of bovine viral diarrhoea virus (BVDV) transmission through cattle movements
Cited by: 31
Author(s): M. Carolyn Gates, R.W. Humphry, George J. Gunn, Mark Woolhouse
Software Mentions: 2
Published: about 10 years ago

10.1155/2021/8708023

Tear Film Proteome of Healthy Domestic Cats
Cited by: 2
Author(s): Jéssica Fontes Veloso, Paula Elisa Brandão Guedes, Luciana Carvalho Lacerda, Juliano Oliveira Santana, Irma Yuliana Mora-Ocampo, Carlos Priminho Pirovani, Arianne Pontes Oriá, Alexandre Dias Munhoz, Renata Santiago Alberto Carlos
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-019-2917-z

A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery
Cited by: 8
Author(s): Emily E. Ackerman, John F. Alcorn, Takeshi Hase, Jason E. Shoemaker
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00357-19

Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance
Cited by: 14
Author(s): Linwei Wu, Xiaoyu Shan, Si Chen, Qiuting Zhang, Qi Qi, Ziyan Qin, Huaqun Yin, Jizhong Zhou, Qiang He, Yunfeng Yang
Software Mentions: 2
Published: almost 5 years ago

10.1007/s11252-017-0724-8

The application of graph theory and percolation analysis for assessing change in the spatial configuration of pond networks
Cited by: 10
Author(s): Ian Thornhill, Lesley Batty, Matthew J. Hewitt, Nikolai Friberg, Mark E. Ledger
Software Mentions: 2
Published: almost 7 years ago

10.15252/msb.20156484

An inter‐species protein–protein interaction network across vast evolutionary distance
Cited by: 42
Author(s): Quan Zhong, Samuel Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick J. Haley, Ryan R. Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, S. Balaji, Lila Ghamsari, Michael A. Calderwood, Thomas Rolland, Benoît Charloteaux, Susan Lindquist, Albert‐László-L. Barabási, David E. Hill, Patrick Aloy, Michael E. Cusick, Yu Xia, Frederick P. Roth, Marc Vidal
Software Mentions: 2
Published: over 8 years ago

10.15252/msb.20188594

High‐resolution mapping of cancer cell networks using co‐functional interactions
Cited by: 61
Author(s): Evan A. Boyle, Jonathan K. Pritchard, William J. Greenleaf
Software Mentions: 2
Published: almost 6 years ago

10.1002/mgg3.659

Prioritization and comprehensive analysis of genes related to major depressive disorder
Cited by: 12
Author(s): Yi Liu, Ping Fan, Shiyuan Zhang, Yidan Wang, Dan Liŭ
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules26061664

PepFun: Open Source Protocols for Peptide-Related Computational Analysis
Cited by: 11
Author(s): Rodrigo Ochoa, Pilar Cossio
Software Mentions: 2
Published: over 3 years ago

10.1128/mSystems.01213-20

Interkingdom Gut Microbiome and Resistome of the Cockroach <i>Blattella germanica</i>
Cited by: 11
Author(s): Rebeca Domínguez‐Santos, Ana Elena Pérez‐Cobas, Paolo Cuti, Vicente Pérez‐Brocal, Carlos García-Ferris, Andrés Moya, Amparo Latorre, Rosario Gil
Software Mentions: 2
Published: over 3 years ago

10.3390/molecules24061081

CuDDI: A CUDA-Based Application for Extracting Drug-Drug Interaction Related Substance Terms from PubMed Literature
Cited by: 2
Author(s): Ling Yin, Aditya Chandra Vothgod Ramachandra, Minh Pham, Yi-Cheng Tu, Feng Cheng
Software Mentions: 2
Published: over 5 years ago

10.1016/j.molcel.2016.07.008

Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer
Cited by: 57
Author(s): Natasha S. Latysheva, Matt Oates, Louis Maddox, Tilman Flock, Julian Gough, Marija Buljan, Robert J. Weatheritt, M. Madan Babu
Software Mentions: 2
Published: over 8 years ago

10.1093/molbev/msv058

An<i>Arabidopsis</i>Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors
Cited by: 129
Author(s): Jinpu Jin, Kongwang He, Xing Tang, Zhe Li, Le Lv, Yi Zhao, Jianxun Luo, Ge Gao
Software Mentions: 2
Published: over 9 years ago

10.1128/mSystems.00394-21

A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity
Cited by: 4
Author(s): Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu
Software Mentions: 2
Published: about 3 years ago

10.1093/molbev/msz152

Coevolution of Sites under Immune Selection Shapes Epstein–Barr Virus Population Structure
Cited by: 19
Author(s): Fanny Wegner, Florent Lassalle, Daniel P. Depledge, François Balloux, Judith Breuer
Software Mentions: 2
Published: over 5 years ago

10.1002/humu.22906

Network-Informed Gene Ranking Tackles Genetic Heterogeneity in Exome-Sequencing Studies of Monogenic Disease
Cited by: 5
Author(s): Nick Dand, Reiner Schulz, Michael E. Weale, Laura Southgate, Rebecca J. Oakey, Michael A. Simpson, Thomas Schlitt
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2105-13-35

Assessing statistical significance in causal graphs
Cited by: 11
Author(s): Leonid Chindelevitch, Po‐Ru Loh, Ahmed Enayetallah, Bonnie Berger, Daniel Ziemek
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41396-018-0232-8

Genetic correlation network prediction of forest soil microbial functional organization
Cited by: 56
Author(s): Bin Ma, Kankan Zhao, Xiaofei Lv, Weiqin Su, Zhongmin Dai, Jack A. Gilbert, Philip C. Brookes, Karoline Faust, Jianming Xu
Software Mentions: 2
Published: over 6 years ago

10.1038/s41396-021-00957-3

Light exposure mediates circadian rhythms of rhizosphere microbial communities
Cited by: 32
Author(s): Kankan Zhao, Bin Ma, Yan Xu, Erinne Stirling, Jianming Xu
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms7120586

Root-Associated Fungal Communities in Two Populations of the Fully Mycoheterotrophic Plant Arachnitis uniflora Phil. (Corsiaceae) in Southern Chile
Cited by: 12
Author(s): Héctor Herrera, Javiera Soto, Luz E. de Bashan, Inmaculada Sampedro, César Arriagada
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms6040101

A Metabolomic-Based Evaluation of the Role of Commensal Microbiota throughout the Gastrointestinal Tract in Mice
Cited by: 20
Author(s): Yurie Yamamoto, Yumiko Nakanishi, S. Murakami, Wanping Aw, Tomoya Tsukimi, Ryoko Nozu, Masaki Ueno, Kyoji Hioki, Kenji Nakahigashi, Akiyoshi Hirayama, Masahiro Sugimoto, Tomoyoshi Soga, Mamoru Ito, Masaru Tomita, Shinji Fukuda
Software Mentions: 2
Published: about 6 years ago

10.1186/2042-5783-2-8

Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli
Cited by: 8
Author(s): Lars Snipen, Trudy M. Wassenaar, Eric Altermann, Jonathan W. Olson, Sophia Kathariou, Karin Lagesen, Mónica Takamiya, Susanne Knøchel, David W. Ussery, Richard J. Meinersmann
Software Mentions: 2
Published: about 12 years ago

10.1099/mgen.0.000203

Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins
Cited by: 25
Author(s): Catherine Branger, Alice Ledda, Typhaine Billard-Pomarès, Benoît Doublet, Stéphanie Fouteau, Valérie Barbe, David Roche, Stéphane Cruveiller, Claudine Médigue, Miguel Sautié Castellanos, Dominique Decré, Laurence Drieux-Rouze, Olivier Clermont, Jérémy Glodt, Olivier Tenaillon, Axel Cloeckaert, Guillaume Arlet, Erick Denamur
Software Mentions: 2
Published: about 6 years ago

10.1038/s41396-019-0567-9

Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems
Cited by: 222
Author(s): Zhongmin Dai, Guofei Liu, Huaihai Chen, Chengrong Chen, Jingkuan Wang, Shaoying Ai, Dan Wei, Daming Li, Bin Ma, Caixian Tang, Philip C. Brookes, Jianming Xu
Software Mentions: 2
Published: almost 5 years ago

10.1099/mgen.0.000157

Dynamic sporulation gene co-expression networks for Bacillus subtilis 168 and the food-borne isolate Bacillus amyloliquefaciens: a transcriptomic model
Cited by: 4
Author(s): Jimmy Omony, Anne de Jong, Antonina O. Krawczyk, Robyn T. Eijlander, Oscar P. Kuipers
Software Mentions: 2
Published: almost 7 years ago

10.3390/md16100356

Metabolomic Investigations on Nesterenkonia flava Revealed Significant Differences between Marine and Terrestrial Actinomycetes
Cited by: 16
Author(s): Conghua Xie, Jin‐Mei Xia, Junsong Wang, Donghai Lin, Xian‐Wen Yang
Software Mentions: 2
Published: about 6 years ago

10.1186/1475-2875-12-397

The demographics of human and malaria movement and migration patterns in East Africa
Cited by: 56
Author(s): Deepa Pindolia, Andrés J. García, Zhengjing Huang, David L. Smith, Victor A. Alegana, Abdisalan M. Noor, Robert W. Snow, Andrew J. Tatem
Software Mentions: 2
Published: about 11 years ago

10.18632/oncotarget.7293

Mutanome and expression of immune response genes in microsatellite stable colon cancer
Cited by: 6
Author(s): Rebeca Sanz‐Pamplona, Raúl Gil-Hoyos, Adriana López-Dóriga, M. Henar Alonso, Susanna Aussó, David G. Mollevı́, Cristina Santos, Xavier Sanjuán, Ramón Salazar, Ramón Alemany, Vı́ctor Moreno
Software Mentions: 2
Published: almost 9 years ago

10.16910/jemr.11.4.1

Using Eye Movement Data Visualization to Enhance Training of Air Traffic Controllers: A Dynamic Network Approach
Cited by: 5
Author(s): Saptarshi Mandal, Ziho Kang
Software Mentions: 2
Published: over 6 years ago

10.5194/aab-63-19-2020

Proximity patterns in water buffaloes' activities on pasture
Cited by: 0
Author(s): Eleni T. Tsiobani, M. D. Yiakoulaki, Nikolaos Hasanagas, Ioannis Antoniou
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12967-019-1947-7

Cytokine expression in Treponema pallidum infection
Cited by: 6
Author(s): Noah Kojima, Janet Siebert, Holden T. Maecker, Yael Rosenberg-Hasson, Segundo R. León, Silver K. Vargas, Kelika A. Konda, Carlos F. Caceres, Jeffrey D. Klausner
Software Mentions: 2
Published: over 5 years ago

10.1155/2019/2146391

Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice
Cited by: 10
Author(s): Na Li, Yang Wang, Jing Lü, Chuan Liu
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.13627

Identification of laryngeal cancer prognostic biomarkers using an inflammatory gene-related, competitive endogenous RNA network
Cited by: 19
Author(s): Qun He, Linli Tian, Hao Jiang, Jiarui Zhang, Qiang Li, Yanan Sun, Jianwen Zhao, Huijun Li, Ming Liu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12933-021-01349-9

A molecular signature for the metabolic syndrome by urine metabolomics
Cited by: 21
Author(s): Chiara Bruzzone, Rubén Gil‐Redondo, Marisa Seco, Rocío Barragán, Laura de la Cruz, Claire Cannet, Hartmut Schäfer, Fang Fang, Tammo Diercks, Maider Bizkarguenaga, Beatriz González-Valle, Ana Laín, Arantza Sanz-Parra, Óscar Coltell, Ander López de Letona, Manfred Spraul, Shelly C. Lu, Elisabetta Buguianesi, Nieves Embade, Quentin M. Anstee, Dolores Corella, José M. Mato, Óscar Millet
Software Mentions: 2
Published: over 3 years ago

10.1002/cam4.1821

Surgeon peer network characteristics and adoption of new imaging techniques in breast cancer: A study of perioperative MRI
Cited by: 12
Author(s): Sara Tannenbaum, Pamela R. Soulos, Jeph Herrin, Craig Evan Pollack, Xiao Xu, Nicholas A. Christakis, Howard P. Forman, James B. Yu, Brigid K. Killelea, Shi Yi Wang, Cary P. Gross
Software Mentions: 2
Published: about 6 years ago

10.1093/braincomms/fcaa216

Retrospective analysis of hemispheric structural network change as a function of location and size of glioma
Cited by: 8
Author(s): Shawn D’Souza, Lisa Hirt, D. Ryan Ormond, John A. Thompson
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijerph16071223

Impacts of Road Traffic Network and Socioeconomic Factors on the Diffusion of 2009 Pandemic Influenza A (H1N1) in Mainland China
Cited by: 32
Author(s): Bo Xu, Huaiyu Tian, Clive E. Sabel, Bing Xu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41416-020-01257-x

Comparative analysis of drug response and gene profiling of HER2-targeted tyrosine kinase inhibitors
Cited by: 27
Author(s): Neil T. Conlon, Jeffrey J. Kooijman, Suzanne J.C. van Gerwen, Winfried R. Mulder, Guido J.R. Zaman, Irmina Diala, Lisa DeFazio-Eli, Alshad S. Lalani, John Crown, Denis M. Collins
Software Mentions: 2
Published: almost 4 years ago

10.1093/biosci/biv122

Ecological Networks in Stored Grain: Key Postharvest Nodes for Emerging Pests, Pathogens, and Mycotoxins
Cited by: 67
Author(s): John Fredy Hernández Nopsa, Gregory J. Daglish, David W. Hagstrum, John F. Leslie, Thomas W. Phillips, Caterina Scoglio, Sara Thomas-Sharma, Gimme H. Walter, Karen A. Garrett
Software Mentions: 2
Published: about 9 years ago

10.3390/ijerph17010090

Potential Confounders in the Analysis of Brazilian Adolescent’s Health: A Combination of Machine Learning and Graph Theory
Cited by: 3
Author(s): Amanda Yumi Ambriola Oku, Guilherme Augusto Zimeo Morais, Ana Paula Arantes Bueno, André Fujita, João Ricardo Sato
Software Mentions: 2
Published: almost 5 years ago

10.1007/s41109-021-00355-w

Lost and found: applying network analysis to public health contact tracing for HIV
Cited by: 0
Author(s): Dana K. Pasquale, Irene A. Doherty, Peter A. Leone, Ann M. Dennis, Erika Samoff, Constance S. Jones, John E Barnhart, William C. Miller
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijerph17051764

Relationship of Salivary Microbiome with the Worsening of the Periodontal Health Status in Young Adults: A 3-Year Cohort Study
Cited by: 1
Author(s): Monirul Islam, Daisuke Ekuni, Naoki Toyama, Terumasa Kobayashi, Kohei Fujimori, Yuzo Uchida, Daiki Fukuhara, Ayano Taniguchi-Tabata, Koichi Kataoka, Yoshiaki Iwasaki, Manabu Morita
Software Mentions: 2
Published: over 4 years ago

10.3390/ijerph17124182

Statistical and Network-Based Analysis of Italian COVID-19 Data: Communities Detection and Temporal Evolution
Cited by: 12
Author(s): Marianna Milano, Mario Cannataro
Software Mentions: 2
Published: over 4 years ago

10.3389/fnins.2015.00472

Identification of Voxels Confounded by Venous Signals Using Resting-State fMRI Functional Connectivity Graph Community Identification
Cited by: 9
Author(s): Klaudius Kalcher, Roland N. Boubela, Wolfgang Huf, Christian Našel, Ewald Moser
Software Mentions: 2
Published: almost 9 years ago

10.3390/biology10090921

MIDESP: Mutual Information-Based Detection of Epistatic SNP Pairs for Qualitative and Quantitative Phenotypes
Cited by: 3
Author(s): Felix Heinrich, Faisal Ramzan, Abirami Rajavel, Armin O. Schmitt, Mehmet Gültaş
Software Mentions: 2
Published: about 3 years ago

10.3389/fmicb.2018.02237

Diversity of Yeasts and Molds by Culture-Dependent and Culture-Independent Methods for Mycobiome Surveillance of Traditionally Prepared Dried Starters for the Production of Indian Alcoholic Beverages
Cited by: 34
Author(s): Shankar Prasad Sha, Mangesh V. Suryavanshi, Kunal Jani, Avinash Sharma, Yogesh S. Shouche, Jyoti Prakash Tamang
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2021.632695

Evaluation of the Inflammatory Cytokines and IL-10 Network in Individuals Co-infected With Human T-Cell Lymphotropic Virus and Hepatitis C Virus (HTLV/HCV)
Cited by: 1
Author(s): Felicidade Mota Pereira, Pablo Ivan Pereira Ramos, Monique Lírio, Ajax Mercês Atta, Ilka Regina Souza de Oliveira, Fabio Carneiro Vosqui Nascimento, Marcelo Costa Silva, Bernardo Galvão–Castro, Maria Fernanda Rios Grassi
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2020.01361

Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes
Cited by: 22
Author(s): Hirokazu Toju, Masato S. Abe, Chiharu Ishii, Haruo Yoshiki, Hiroaki Fujita, Shinji Fukuda
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.720400

Construction and Characterization of Long Non-Coding RNA-Associated Networks to Reveal Potential Prognostic Biomarkers in Human Lung Adenocarcinoma
Cited by: 4
Author(s): Wenting Zhou, Chen Bai, C. B. Long, Li Hu, Yanfei Zheng
Software Mentions: 2
Published: about 3 years ago

10.3389/fmicb.2019.03123

The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene
Cited by: 13
Author(s): Blair Armistead, Christopher Whidbey, Lakshminarayan M. Iyer, Pilar Herrero-Foncubierta, Phoenicia Quach, Alí Haïdour, L. Aravind, Juan M. Cuerva, Heather B. Jaspan, Lakshmi Rajagopal
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2017.00545

Genetic Characterization of the Exceptionally High Heat Resistance of the Non-toxic Surrogate Clostridium sporogenes PA 3679
Cited by: 16
Author(s): Robert R. Butler, Kristin M. Schill, Yun Wang, Jean‐François Pombert
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2016.01285

Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
Cited by: 84
Author(s): Adrian Ho, Roey Angel, Annelies J. Veraart, Anne Daebeler, Zhongjun Jia, Sang Yoon Kim, Frederiek‐Maarten Kerckhof, Nico Boon, Paul L. E. Bodelier
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2016.00570

Data-based Reconstruction of Gene Regulatory Networks of Fungal Pathogens
Cited by: 5
Author(s): Reinhard Guthke, Silvia Gerber, Theresia Conrad, Sebastian Vlaic, Saliha Durmuş, Tunahan Çakır, Fatih Erdoğan Sevilgen, Ekaterina Shelest, Jörg Linde
Software Mentions: 2
Published: over 8 years ago

10.3389/fonc.2021.640731

Post-Transformation IGHV-IGHD-IGHJ Mutations in Chronic Lymphocytic Leukemia B Cells: Implications for Mutational Mechanisms and Impact on Clinical Course
Cited by: 9
Author(s): Davide Bagnara, Catherine Tang, Jennifer R. Brown, Siddha Kasar, Stacey M. Fernandes, Monica Colombo, Stefano Vergani, Andrea Nicola Mazzarello, Fabio Ghiotto, Silvia Bruno, Fortunato Morabito, R. Kanti, Jonathan E. Kolitz, Jacqueline C. Barrientos, Steven L. Allen, Franco Fais, Matthew D. Scharff, Thomas MacCarthy, Nicholas Chiorazzi
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2020.556002

Effects of Plant and Soil Characteristics on Phyllosphere and Rhizosphere Fungal Communities During Plant Development in a Copper Tailings Dam
Cited by: 15
Author(s): Tong Jia, Yushan Yao, Tingyan Guo, Ruihong Wang, Bo Chai
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2012.00278

Phylodynamic analysis of a viral infection network
Cited by: 7
Author(s): Teiichiro Shiino
Software Mentions: 2
Published: almost 13 years ago

10.3389/fphys.2018.01377

Causality Analysis and Cell Network Modeling of Spatial Calcium Signaling Patterns in Liver Lobules
Cited by: 7
Author(s): Aalap Verma, Anil Noronha Antony, Babatunde A. Ogunnaike, Jan B. Hoek, Rajanikanth Vadigepalli
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2019.00234

Sperm Microbiota and Its Impact on Semen Parameters
Cited by: 110
Author(s): David Baud, Céline Pattaroni, Nicolas Vulliemoz, Vincent Castella, Benjamin J. Marsland, Miloš Stojanov
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2018.01785

Simulation of the Dynamics of Primary Immunodeficiencies in B Cells
Cited by: 2
Author(s): Gabriel Teku, Mauno Vihinen
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2021.644548

Delineating the Association Between Soluble CD26 and Autoantibodies Against G-Protein Coupled Receptors, Immunological and Cardiovascular Parameters Identifies Distinct Patterns in Post-Infectious vs. Non-Infection-Triggered Myalgic Encephalomyelitis/Chronic Fatigue Syndrome
Cited by: 12
Author(s): Marvin Szklarski, Helma Freitag, Siegfried Lorenz, S Becker, Franziska Sotzny, Sandra Bauer, Jelka Hartwig, Harald Heidecke, Kirsten Wittke, Claudia Kedor, Leif G. Hanitsch, Patricia Grabowski, Nuno Sepúlveda, Carmen Scheibenbogen
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2020.01887

FcRn Overexpression Expands Diversity of the Humoral Immune Response in bFcRn Transgenic Mice
Cited by: 2
Author(s): Bence Szikora, Anita Marx, Péter K. Jani, Orsolya Pipek, Viktor Müller, István Csabai, Imre Kacskovıcs
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2021.597983

Identification of the Key Regulators of Spina Bifida Through Graph-Theoretical Approach
Cited by: 2
Author(s): Naaila Tamkeen, Suliman Yousef Alomar, Saeed Awad M Alqahtani, Abdullah Al-jurayyan, Anam Farooqui, Safia Tazyeen, Nadeem Ahmad, Romana Ishrat
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2018.01467

Paving the Way From the Lab to the Field: Using Synthetic Microbial Consortia to Produce High-Quality Crops
Cited by: 55
Author(s): Zhaochen Kong, Miranda M. Hart, Hongguang Liu
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2020.00659

Comprehensive Network Analysis Reveals Alternative Splicing-Related lncRNAs in Hepatocellular Carcinoma
Cited by: 8
Author(s): Junqing Wang, Xiuquan Wang, Akshay Bhat, Yixin Chen, Keli Xu, Yin‐Yuan Mo, S. Stephen Yi, Yunyun Zhou
Software Mentions: 2
Published: over 4 years ago

10.1186/2042-6410-4-20

Sex chromosome complement regulates expression of mood-related genes
Cited by: 54
Author(s): Marianne L. Seney, Kokomma I Ekong, Ying Ding, George C. Tseng, Etienne Sibille
Software Mentions: 2
Published: about 11 years ago

10.3390/ijerph18083922

Time Granularity Impact on Propagation of Disruptions in a System-of-Systems Simulation of Infrastructure and Business Networks
Cited by: 3
Author(s): Mateusz Iwo Dubaniowski, Hans Rudolf Heinimann
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2014.00598

Integrated network analysis and effective tools in plant systems biology
Cited by: 40
Author(s): Atsushi Fukushima, Shigehiko Kanaya, Kozo Nishida
Software Mentions: 2
Published: about 10 years ago

10.1093/bioinformatics/btt486

Optimizing a global alignment of protein interaction networks
Cited by: 56
Author(s): Leonid Chindelevitch, Chengyu Ma, Chung-Shou Liao, Bonnie Berger
Software Mentions: 2
Published: about 11 years ago

10.1186/1746-6148-9-198

The performance of approximations of farm contiguity compared to contiguity defined using detailed geographical information in two sample areas in Scotland: implications for foot-and-mouth disease modelling
Cited by: 13
Author(s): Jessica Flood, Thibaud Porphyre, Michael J. Tildesley, Mark E. J. Woolhouse
Software Mentions: 2
Published: almost 12 years ago

10.3389/fgene.2019.00064

Mouse Skull Mean Shape and Shape Robustness Rely on Different Genetic Architectures and Different Loci
Cited by: 11
Author(s): Ceferino Varón‐González, Luisa F. Pallares, Vincent Debat, Nicolas Navarro
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2015.00307

Biological networks: the microscope of the twenty-first century?
Cited by: 0
Author(s): Frank Emmert‐Streib, Matthias Dehmer
Software Mentions: 2
Published: about 9 years ago

10.3390/ijerph18168388

The Structure of Social Support in Confidant Networks: Implications for Depression
Cited by: 4
Author(s): Liyuan Wang, Lindsay E. Young, Lynn C. Miller
Software Mentions: 2
Published: over 3 years ago

10.3389/fcimb.2021.641174

Trypanosome KKIP1 Dynamically Links the Inner Kinetochore to a Kinetoplastid Outer Kinetochore Complex
Cited by: 10
Author(s): Lorenzo Brusini, Simon D’Archivio, Jennifer McDonald, Bill Wickstead
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2017.01029

Evidence and Consequence of a Highly Adapted Clonal Haplotype within the Australian Ascochyta rabiei Population
Cited by: 23
Author(s): Yasir Mehmood, Prabhakaran Thanjavur Sambasivam, Sukhjiwan Kaur, J. A. Davidson, Audrey E. Leo, Kristy Hobson, Celeste C. Linde, Kevin Moore, Jeremy C. Brownlie, Rebecca Ford
Software Mentions: 2
Published: over 7 years ago

10.12688/f1000research.12404.1

Exploring Vietnamese co-authorship patterns in social sciences with basic network measures of 2008-2017 Scopus data
Cited by: 19
Author(s): Tung Manh Ho, Ha Viet Nguyen, Thu‐Trang Vuong, Quang-Minh Dam, Hiep‐Hung Pham, Quan‐Hoang Vuong
Software Mentions: 2
Published: about 7 years ago

10.1186/s41544-020-00057-y

nSARS-Cov-2, pulmonary edema and thrombosis: possible molecular insights using miRNA-gene circuits in regulatory networks
Cited by: 5
Author(s): Pankaj Khurana, Apoorv Gupta, R. Sugadev, Y. K. Sharma, Rajeev K. Varshney, Lilly Ganju, Bharani Kumar
Software Mentions: 2
Published: about 4 years ago

10.1186/s12917-017-1103-7

Descriptive and network analyses of the equine contact network at an equestrian show in Ontario, Canada and implications for disease spread
Cited by: 8
Author(s): Kelsey L. Spence, Terri L. O’Sullivan, Zvonimir Poljak, Amy L. Greer
Software Mentions: 2
Published: over 7 years ago

10.1186/s12917-016-0835-0

Emergence of Brucella suis in dogs in New South Wales, Australia: clinical findings and implications for zoonotic transmission
Cited by: 35
Author(s): Siobhan M. Mor, Anke Wiethoelter, Amanda Lee, Barbara Moloney, Daniel James, Richard Malík
Software Mentions: 2
Published: about 8 years ago

10.1186/1752-0509-8-48

Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms
Cited by: 10
Author(s): Aditya Barve, Sayed-Rzgar Hosseini, Olivier Martin, Andreas Wagner
Software Mentions: 2
Published: over 10 years ago

10.1111/eva.13084

Y‐chromosome haplotypes are associated with variation in size and age at maturity in male Chinook salmon
Cited by: 11
Author(s): Garrett J. McKinney, James E. Seeb, Carita E. Pascal, Daniel E. Schindler, Sara E. Gilk‐Baumer, Lisa W. Seeb
Software Mentions: 2
Published: about 4 years ago

10.3389/fpsyg.2015.01111

Second language social networks and communication-related acculturative stress: the role of interconnectedness
Cited by: 58
Author(s): Marina M. Doucerain, Raheleh S. Varnaamkhaasti, Norman Segalowitz, Andrew G. Ryder
Software Mentions: 2
Published: over 9 years ago

10.1007/s00442-021-04967-y

The role of habitat configuration in shaping animal population processes: a framework to generate quantitative predictions
Cited by: 8
Author(s): Peng He, Pierre‐Olivier Montiglio, Marius Somveille, Maurício Cantor, Dan Farine
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/4323989

Korean Traditional Medicine in Treating Patients with Mild Cognitive Impairment: A Multicenter Prospective Observational Case Series
Cited by: 9
Author(s): Yujin Choi, Young Eun Kim, Ui Min Jerng, Hwan Kim, Sung Ik Lee, Ga-Na Kim, Seung-Hun Cho, Hyung Won Kang, In Chul Jung, Kyungsun Han, Jun-Hwan Lee
Software Mentions: 2
Published: over 4 years ago

10.1016/j.epidem.2015.02.008

Controlling infectious disease through the targeted manipulation of contact network structure
Cited by: 59
Author(s): M. Carolyn Gates, Mark Woolhouse
Software Mentions: 2
Published: about 9 years ago

10.3390/e23091204

Granger Causality among Graphs and Application to Functional Brain Connectivity in Autism Spectrum Disorder
Cited by: 4
Author(s): Adele Ribeiro, Maciel Calebe Vidal, João Ricardo Sato, André Fujita
Software Mentions: 2
Published: about 3 years ago

10.3390/e22121383

Research on Community Detection in Complex Networks Based on Internode Attraction
Cited by: 5
Author(s): Jinfang Sheng, Cheng Liu, Long Chen, Bin Wang, Junkai Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1111/ele.12898

Contact networks structured by sex underpin sex‐specific epidemiology of infection
Cited by: 29
Author(s): Matthew J. Silk, Nicola Weber, Lucy C. Steward, David J. Hodgson, Mike Boots, Darren P. Croft, Richard J. Delahay, Robbie A. McDonald
Software Mentions: 2
Published: almost 7 years ago

10.1002/ece3.7235

Roost sites of chimney swift ( <i>Chaetura pelagica</i> ) form large‐scale spatial networks
Cited by: 5
Author(s): Courtney E. le Roux, Joseph J. Nocera
Software Mentions: 2
Published: over 3 years ago

10.3389/fpsyg.2015.00603

Network-based characterization of brain functional connectivity in Zen practitioners
Cited by: 36
Author(s): Phebe Brenne Kemmer, Ying Guo, Yi‐Kai Wang, Giuseppe Pagnoni
Software Mentions: 2
Published: over 9 years ago

10.1016/j.eclinm.2021.100968

HIV-1 Transmission linkages among persons with incident infection to inform public health surveillance
Cited by: 7
Author(s): Ann M. Dennis, Simon D. W. Frost, Kimberly Enders, Andrew Cressman, Erik Volz, Nicole Adams, William C. Miller, Myron S. Cohen, Victoria Mobley, Erika Samoff, Joseph J. Eron
Software Mentions: 2
Published: over 3 years ago

10.1242/dmm.042101

Integrated lipidomic and transcriptomic analyses identify altered nerve triglycerides in mouse models of prediabetes and type 2 diabetes
Cited by: 40
Author(s): Phillipe D. O’Brien, Kai Guo, Stéphanie Eid, Amy E. Rumora, Lucy M. Hinder, John M. Hayes, Faye E. Mendelson, Junguk Hur, Eva L. Feldman
Software Mentions: 2
Published: almost 6 years ago

10.3390/diagnostics10080586

Identifying the Salient Genes in Microarray Data: A Novel Game Theoretic Model for the Co-Expression Network
Cited by: 2
Author(s): Papori Neog Bora, Vishwa Jyoti Baruah, Surajit Borkotokey, Loyimee Gogoi, Priyakshi Mahanta, Ankumon Sarmah, Rajnish Kumar, Stefano Moretti
Software Mentions: 2
Published: over 4 years ago

10.1038/s41388-018-0651-z

The coordinated action of VCP/p97 and GCN2 regulates cancer cell metabolism and proteostasis during nutrient limitation
Cited by: 32
Author(s): Katarzyna Parzych, Paula Saavedra‐García, Gabriel N. Valbuena, Hibah A Al-Sadah, Mark E. Robinson, Lucy Penfold, Desislava M Kuzeva, Angie Ruiz-Tellez, Sandra Loaiza, Viktoria Holzmann, Valentina S Caputo, David C. Johnson, Martin Kaiser, Anastasios Karadimitris, Eric Lam, Éric Chevet, Niklas Feldhahn, Hector C. Keun, Holger W. Auner
Software Mentions: 2
Published: almost 6 years ago

10.18632/oncotarget.10734

Distinct distributions of genomic features of the 5’ and 3’ partners of coding somatic cancer gene fusions: arising mechanisms and functional implications
Cited by: 0
Author(s): Yang Zhao, Won‐Min Song, Fan Zhang, Ming‐Ming Zhou, Weijia Zhang, Martin J. Walsh, Bin Zhang
Software Mentions: 2
Published: over 8 years ago

10.1093/database/baaa018

Integrated querying and version control of context-specific biological networks
Cited by: 4
Author(s): Tyler Cowman, Mustafa Coşkun, Ananth Grama, Mehmet Koyutürk
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.dib.2020.105629

A dataset of eco-evidence tools to inform early-stage environmental impact assessments of hydropower development
Cited by: 0
Author(s): Ryan A. McManamay, Esther S. Parish, Christopher R. DeRolph
Software Mentions: 2
Published: over 4 years ago

10.3389/fnsys.2021.580569

Adaptive Rewiring in Weighted Networks Shows Specificity, Robustness, and Flexibility
Cited by: 8
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 3 years ago