cran: igraph | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-62204-7

Adaptive rewiring evolves brain-like structure in weighted networks
Cited by: 5
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 6 years ago

Quantitative Analysis of Salivary Oral Bacteria Associated with Severe Early Childhood Caries and Construction of Caries Assessment Model
Cited by: 20
Author(s): Lijuan Zhang, Tongzheng Sun, Pengfei Zhu, Zheng Sun, Shanshan Li, Fan Li, Ying Zhang, Kaixuan Tan, Jie Lu, Rui Yuan, Zhenggang Chen, Dawei Guo, Qingyuan Guo, Fei Teng, Fang Yang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0230693

Urban foraging: Land management policy, perspectives, and potential
Cited by: 27
Author(s): Mallika Sardeshpande, Charlie M. Shackleton
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-64808-5

Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwood
Cited by: 29
Author(s): María Gómez-Brandòn, Maraike Probst, J.A. Siles, Ursula Peintner, Tommaso Bardelli, Markus Egli, Heribert Insam, Judith Ascher‐Jenull
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0238626

Do economic shocks spread randomly?: A topological study of the global contagion network
Cited by: 4
Author(s): Tamás Sebestyén, Zita Iloskics
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0174671

Collaboration patterns in the German political science co-authorship network
Cited by: 14
Author(s): Philip Leifeld, Sandra Andrea Wankmüller, Valentin Tim Zacharias Berger, Karin Ingold, Christiane Steiner
Software Mentions: 2
Published: over 9 years ago

10.2196/18457

Two Decades of Research Using Taiwan’s National Health Insurance Claims Data: Bibliometric and Text Mining Analysis on PubMed
Cited by: 23
Author(s): Sheng Feng Sung, Cheng‐Yang Hsieh, Yu Hu
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0222222

Are unpopular children more likely to get sick? Longitudinal links between popularity and infectious diseases in early childhood
Cited by: 4
Author(s): Vidar Ulset, Nikolai Olavi Czajkowski, Brage Kraft, Pål Kraft, Ellen Wikenius, Thomas Haarklau Kleppestø, Mona Bekkhus
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-68805-6

Minimal fatal shocks in multistable complex networks
Cited by: 18
Author(s): Lukas Halekotte, Ulrike Feudel
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0184532

Emergence of encounter networks due to human mobility
Cited by: 35
Author(s): Alejandro P. Riascos, José L. Mateos
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0016365

Detecting Instability in Animal Social Networks: Genetic Fragmentation Is Associated with Social Instability in Rhesus Macaques
Cited by: 53
Author(s): Brianne A. Beisner, Megan E. Jackson, Ashley Cameron, Brenda McCowan
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0110088

Active Semi-Supervised Community Detection Based on Must-Link and Cannot-Link Constraints
Cited by: 23
Author(s): Jianjun Cheng, Mingwei Leng, Longjie Li, Hanhai Zhou, Xiaoyun Chen
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-020-70239-z

Pathway-specific model estimation for improved pathway annotation by network crosstalk
Cited by: 11
Author(s): Miguel Castresana-Aguirre, Erik L. L. Sonnhammer
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0225554

Location, location, location: Close ties among older continuing care retirement community residents
Cited by: 4
Author(s): Liat Ayalon, Inbal Yahav
Software Mentions: 2
Published: over 6 years ago

10.2196/jmir.7643

Identifying Opinion Leaders to Promote Organ Donation on Social Media: Network Study
Cited by: 34
Author(s): Jingyuan Shi, Charles T. Salmon
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0255604

Examining the sources of evidence in e-cigarette policy recommendations: A citation network analysis of international public health recommendations
Cited by: 6
Author(s): Marissa J. Smith, Andrew J Baxter, Kathryn Skivington, Mark McCann, Shona Hilton, Srinivasa Vittal Katikireddi
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2148-11-89

Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes
Cited by: 24
Author(s): Corey Hudson, Gavin C. Conant
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0179915

Network analysis of pig movements: Loyalty patterns and contact chains of different holding types in Denmark
Cited by: 25
Author(s): Jana Schulz, Anette Boklund, Tariq Hisham Beshara Halasa, Nils Toft, Hartmut H. K. Lentz
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-020-74964-3

An equity-oriented rethink of global rankings with complex networks mapping development
Cited by: 11
Author(s): Loredana Bellantuono, A. Monaco, Sabina Tangaro, Nicola Amoroso, Vincenzo Aquaro, R. Bellotti
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0241516

Processes and outcomes of diabetes mellitus care by different types of team primary care models
Cited by: 5
Author(s): Fangjian Guo, Yu Li Lin, Mukaila Raji, Bruce Leonard, Lin‐Na Chou, Yong Fang Kuo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0102633

Phylodynamic Analysis Reveals CRF01_AE Dissemination between Japan and Neighboring Asian Countries and the Role of Intravenous Drug Use in Transmission
Cited by: 16
Author(s): Teiichiro Shiino, Junko Hattori, Yoshiyuki Yokomaku, Yoshinori Iwatani, Wataru Sugiura
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0068581

The Community Structure of the European Network of Interlocking Directorates 2005–2010
Cited by: 31
Author(s): Eelke M. Heemskerk, Fabio Daolio, Marco Tomassini
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0036465

Identification and Validation of Ifit1 as an Important Innate Immune Bottleneck
Cited by: 29
Author(s): Jason McDermott, Keri B. Vartanian, Hugh D. Mitchell, Susan L. Stevens, Antonio Sanfilippo, Mary P. Stenzel-Poore
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0222357

Bourdieu, networks, and movements: Using the concepts of habitus, field and capital to understand a network analysis of gender differences in undergraduate physics
Cited by: 10
Author(s): Steven Martin Turnbull, Kirsten Locke, Frédérique Vanholsbeeck, Dion R. J. O’Neale
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0142407

Coevolved Mutations Reveal Distinct Architectures for Two Core Proteins in the Bacterial Flagellar Motor
Cited by: 8
Author(s): Alessandro Pandini, Jens Kleinjung, Shafqat Rasool, Shahid Khan
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0194901

Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species’ global distribution: Combining classical population genetics and network analyses
Cited by: 10
Author(s): Yael S. Rodger, Gili Greenbaum, Micha Silver, Shirli Bar‐David, Gidon Winters
Software Mentions: 2
Published: over 8 years ago

10.1186/s13075-016-0914-4

Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis
Cited by: 17
Author(s): Michael E. Johnson, Andrew V. Grassetti, Jaclyn N. Taroni, Shawn M. Lyons, Devin K. Schweppe, Jessica Gordon, Robert Spiera, Robert Lafyatis, Paul Anderson, Scott A. Gerber, Michael L. Whitfield
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0040337

Information Processing in Social Insect Networks
Cited by: 96
Author(s): James S. Waters, Jennifer H. Fewell
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0140030

Anatomical Network Comparison of Human Upper and Lower, Newborn and Adult, and Normal and Abnormal Limbs, with Notes on Development, Pathology and Limb Serial Homology vs. Homoplasy
Cited by: 28
Author(s): Rui Diogo, Borja Esteve‐Altava, Christopher M. Smith, Julia C. Boughner, Diego Rasskin‐Gutman
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2407-12-331

A systems biology approach to the global analysis of transcription factors in colorectal cancer
Cited by: 25
Author(s): Meeta Pradhan, Nagendra Prasad, Mathew Palakal
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0060982

Autistic Traits in Neurotypical Adults: Correlates of Graph Theoretical Functional Network Topology and White Matter Anisotropy Patterns
Cited by: 30
Author(s): András Jakab, Miklós Emri, Tamás Spisák, Anita Szemán-Nagy, Mónika Béres, Sándor Attila Kis, Péter Molnár, Ervin Berényi
Software Mentions: 2
Published: over 13 years ago

10.2196/21680

Predictors of Health Information Seeking Behavior: A Systematic Review and Network Analysis (Preprint)
Cited by: 16
Author(s): Ardalan Mirzaei, Parisa Aslani, Edward Luca, Carl R. Schneider
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0208227

The geographic evolution of political cleavages in Switzerland: A network approach to assessing levels and dynamics of polarization between local populations
Cited by: 3
Author(s): Shin Alexandre Koseki
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-87318-4

Fragmented sleep relates to hallucinations across perceptual modalities in the general population
Cited by: 5
Author(s): Sanne Brederoo, J N de Boer, Jacqueline de Vries, Mascha M J Linszen, Iris Sommer
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87555-7

Proteomic profiling of the rat hippocampus from the kindling and pilocarpine models of epilepsy: potential targets in calcium regulatory network
Cited by: 14
Author(s): Leila Sadeghi, Albert A. Rizvanov, Bahareh Dabirmanesh, И. И. Салафутдинов, Mohammad Sayyah, Amir Shojaei, Javad Zahiri, Javad Mirnajafi‐Zadeh, Babak Khorsand, Khosro Khajeh, Yaghoub Fathollahi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0152123

Who Is Spreading Avian Influenza in the Moving Duck Flock Farming Network of Indonesia?
Cited by: 18
Author(s): Joerg Henning, Dirk U. Pfeiffer, M.A. Stevenson, Didik Yulianto, W. Priyono, J. Meers
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0125725

Using Graph Components Derived from an Associative Concept Dictionary to Predict fMRI Neural Activation Patterns that Represent the Meaning of Nouns
Cited by: 5
Author(s): Hiroyuki Akama, Masakazu Miyake, Jason J. Jung, Brian Murphy
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0038039

Transcriptome Profiling of Citrus Fruit Response to Huanglongbing Disease
Cited by: 141
Author(s): Federico Martinelli, Sandra L. Uratsu, Ute Albrecht, Russell L. Reagan, My L. Phu, Monica Britton, Vincent Buffalo, Joseph Fass, Elizabeth Leicht, Wenwei Zhao, Dazhen Lin, Raissa M. D’Souza, Cristina E. Davis, Kim D. Bowman, Abhaya M. Dandekar
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0027009

Modeling the Mechanism of Action of a DGAT1 Inhibitor Using a Causal Reasoning Platform
Cited by: 24
Author(s): Ahmed Enayetallah, Daniel Ziemek, Michael T. Leininger, Ranjit Randhawa, Jinlin Yang, Tara B. Manion, Dawn Mather, William J. Zavadoski, Max Kühn, Judith L. Treadway, Shelly Ann G. des Etages, E. Michael Gibbs, Nigel Greene, Claire M. Steppan
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0211227

Dissecting a novel allosteric mechanism of cruzain: A computer-aided approach
Cited by: 13
Author(s): Lilian Hernández Alvarez, Diego E. B. Gomes, Jorge Enrique Hernández González, Pedro Geraldo Pascutti
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-90171-0

Network-based analysis of key regulatory genes implicated in Type 2 Diabetes Mellitus and Recurrent Miscarriages in Turner Syndrome
Cited by: 3
Author(s): Anam Farooqui, Alaa Alhazmi, Shafiul Haque, Naaila Tamkeen, Mahboubeh Mehmankhah, Safia Tazyeen, Sher Ali, Romana Ishrat
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0198222

On an algorithmic definition for the components of the minimal cell
Cited by: 2
Author(s): Octavio Martínez, M. Humberto Reyes-Valdés
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pntd.0005659

Challenges in developing methods for quantifying the effects of weather and climate on water-associated diseases: A systematic review
Cited by: 35
Author(s): Giovanni Lo Iacono, Ben Armstrong, Lora E. Fleming, Richard Elson, Sari Kovats, Sotiris Vardoulakis, Gordon Nichols
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2105-12-149

Fast network centrality analysis using GPUs
Cited by: 99
Author(s): Zhiao Shi, Bing Zhang
Software Mentions: 2
Published: about 15 years ago

10.1186/s12859-018-2453-2

A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen
Cited by: 3
Author(s): Helen N. Catanese, Kelly A. Brayton, Assefaw H. Gebremedhin
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pntd.0006070

The introduction of dengue follows transportation infrastructure changes in the state of Acre, Brazil: A network-based analysis
Cited by: 41
Author(s): Raquel Martins Lana, Tiago França Melo de Lima, Nildimar Alves Honório, Cláudia Torres Codeço
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pmed.1001810

Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis
Cited by: 187
Author(s): Soo-Yon Rhee, José Luis Santiago Blanco, Michael R. Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese, Raph L Hamers, Silvia Bertagnolio, Tobias F. Rinke de Wit, Avelin F. Aghokeng, Jan Albert, Radko Avi, Santiago Ávila‐Ríos, Pascal Bessong, James Brooks, Charles A. Boucher, Zabrina L. Brumme, Michael P. Busch, Hermann Bussmann, Marie Laure Chaix, Bum Sik Chin, Toni Thomas d’Aquin, Cillian F. De Gascun, Anne Derache, Diane Descamps, Alaka Deshpande, Cyrille F. Djoko, Susan H. Eshleman, Hervé Fleury, Pierre Frange, Seiichiro Fujisaki, P. Richard Harrigan, Junko Hattori, África Holguín, Gillian Hunt, Hiroshi Ishiguro, Pontiano Kaleebu, David Katzenstein, Sasisopin Kiertiburanakul, Jerome H. Kim, Sung Soon Kim, Yanpeng Li, Irja Lutsar, Lynn Morris, Nicaise Ndembi, Kee Peng Ng, Ramesh Paranjape, Martine Peeters, Mario Poljak, Matt A. Price, Manon Ragonnet‐Cronin, Gustavo Reyes‐Terán, Morgane Rolland, Sunee Sirivichayakul, Davey M. Smith, Marcelo A. Soares, Vincent Soriano, Deogratius Ssemwanga, Maja Stanojević, Mariane A. Stefani, Wataru Sugiura, Somnuek Sungkanuparph, Amílcar Tanuri, Kok Keng Tee, Hong Ha M. Truong, David van de Vijver, Nicole Vidal, Chunfu Yang, Rongge Yang, Gonzalo Yebra, John P. A. Ioannidis, Anne‐Mieke Vandamme, Robert W. Shafer
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1002612

Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations
Cited by: 109
Author(s): David Toubiana, Yaniv Semel, Takayuki Tohge, Romina Beleggia, Luigi Cattivelli, Leah Rosental, Zoran Nikoloski, Dani Zamir, Alisdair R. Fernie, Aaron Fait
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pcbi.1004467

Genome-Wide Detection and Analysis of Multifunctional Genes
Cited by: 35
Author(s): Yuri Pritykin, Dario Ghersi, Mona Singh
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pcbi.1007434

Nine quick tips for analyzing network data
Cited by: 21
Author(s): Vincent Miele, Catherine Matias, Stéphane Robin, Stéphane Dray
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-95516-3

Identifying structural connectivity priorities in eastern Paraguay’s fragmented Atlantic Forest
Cited by: 7
Author(s): Noé U. de la Sancha, Sarah A. Boyle, Nancy E. McIntyre
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pcbi.1003881

Linear Motif-Mediated Interactions Have Contributed to the Evolution of Modularity in Complex Protein Interaction Networks
Cited by: 16
Author(s): Inhae Kim, Heetak Lee, Seong Kyu Han, Sanguk Kim
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pcbi.1008832

Collective predator evasion: Putting the criticality hypothesis to the test
Cited by: 17
Author(s): Pascal P. Klamser, Pawel Romanczuk
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1006525

Steered molecular dynamics simulations reveal critical residues for (un)binding of substrates, inhibitors and a product to the malarial M1 aminopeptidase
Cited by: 8
Author(s): Daniel Moore, Conor Brines, Heather Jewhurst, John P. Dalton, Irina G. Tikhonova
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1006796

Conformational coupling by trans-phosphorylation in calcium calmodulin dependent kinase II
Cited by: 5
Author(s): Alessandro Pandini, Howard Schulman, Shahid Khan
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pcbi.1004597

Distinctive Behaviors of Druggable Proteins in Cellular Networks
Cited by: 41
Author(s): Costas Mitsopoulos, Amanda C. Schierz, Paul Workman, Bissan Al‐Lazikani
Software Mentions: 2
Published: over 10 years ago

10.1155/2014/487069

An ImprovedPhysarum polycephalumAlgorithm for the Shortest Path Problem
Cited by: 10
Author(s): Xiaoge Zhang, Qing Wang, Andrew Adamatzky, Felix T.S. Chan, Sankaran Mahadevan, Yong Deng
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pcbi.1003302

A Comprehensive Survey of Small-Molecule Binding Pockets in Proteins
Cited by: 102
Author(s): Mu Gao, Jeffrey Skolnick
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2105-11-343

A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network
Cited by: 92
Author(s): Zhu-Hong You, Zhimin Yin, Kyungsook Han, Dongqing Huang, Xiaobo Zhou
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pcbi.1004067

Exploring Bacterial Organelle Interactomes: A Model of the Protein-Protein Interaction Network in the Pdu Microcompartment
Cited by: 24
Author(s): Julien Jorda, Yu Liu, Thomas A. Bobik, Todd O. Yeates
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pcbi.1002187

Heat Shock Partially Dissociates the Overlapping Modules of the Yeast Protein-Protein Interaction Network: A Systems Level Model of Adaptation
Cited by: 56
Author(s): Ágoston Mihalik, Péter Csermely
Software Mentions: 2
Published: almost 15 years ago

10.1186/s40064-016-2022-y

The topology of the directed clique complex as a network invariant
Cited by: 24
Author(s): Paolo Masulli, Alessandro E. P. Villa
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pcbi.1006888

Predicting synthetic lethal interactions using conserved patterns in protein interaction networks
Cited by: 29
Author(s): Graeme Benstead-Hume, Xiangrong Chen, Suzanna R. Hopkins, Karen A. Lane, Jessica A. Downs, Frances M. G. Pearl
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1003549

Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data
Cited by: 146
Author(s): Colin J. Worby, Marc Lipsitch, William P. Hanage
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pcbi.1004372

Do Brain Networks Evolve by Maximizing Their Information Flow Capacity?
Cited by: 33
Author(s): Chris G. Antonopoulos, Suraj Srivastava, Sandro Ely de Souza Pinto, Murilo S. Baptista
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pbio.1001869

Network Analyses Reveal Pervasive Functional Regulation Between Proteases in the Human Protease Web
Cited by: 135
Author(s): Nikolaus Fortelny, Jennifer H. Cox, Reinhild Kappelhoff, Amanda E. Starr, Philipp F. Lange, Paul Pavlidis, Christopher M. Overall
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pbio.1002515

Topological Small-World Organization of the Fibroblastic Reticular Cell Network Determines Lymph Node Functionality
Cited by: 93
Author(s): Mario Novković, Lucas Onder, Jovana Cupovic, Jun Abe, David Bomze, Viviana Cremasco, Elke Scandella, Jens V Stein, Gennady Bocharov, Shannon J. Turley, Burkhard Ludewig
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pbio.2002612

A multiscale cerebral neurochemical connectome of the rat brain
Cited by: 33
Author(s): Hamid Noori, Judith Schöttler, Mária Ercsey-Ravasz, Alejandro Cosa‐Linan, Melinda Varga, Zoltán Toroczkai, Rainer Spanagel
Software Mentions: 2
Published: about 9 years ago

10.1111/jvim.16058

Peri‐ictal magnetic resonance imaging characteristics in dogs with suspected idiopathic epilepsy
Cited by: 11
Author(s): Aran Nagendran, J. Fraser McConnell, Luisa De Risio, Roberto José‐López, R. Gutierrez Quintana, Kelsey Robinson, Simon Platt, Daniel Sánchez Masián, Thomas W. Maddox, Rita Gonçalves
Software Mentions: 2
Published: over 5 years ago

10.1186/s40814-021-00835-x

Feasibility study of peer-led and school-based social network Intervention (STASH) to promote adolescent sexual health
Cited by: 6
Author(s): Kirstin R Mitchell, Carrie Purcell, Sharon Anne Simpson, Chiara Broccatelli, Julia Bailey, Sarah Barry, Lawrie Elliott, Ross Forsyth, Rachael Hunter, Mark McCann, Lisa McDaid, Kirsty Wetherall, Linda Moore
Software Mentions: 2
Published: about 5 years ago

10.1094/PHYTO-03-18-0072-R

Modeling Epidemics in Seed Systems and Landscapes To Guide Management Strategies: The Case of Sweet Potato in Northern Uganda
Cited by: 25
Author(s): Kelsey F. Andersen, Christopher E. Buddenhagen, Paul Rachkara, R. W. Gibson, Stephen W. Kalule, David P. Phillips, Karen A. Garrett
Software Mentions: 2
Published: almost 7 years ago

10.1098/rstb.2014.0241

Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals
Cited by: 30
Author(s): Kenneth B. Hoehn, Astrid Gall, Rachael Bashford-Rogers, Sarah Fidler, Steve Kaye, Jonathan Weber, Myra O. McClure, Spartac Trial Investigators, Paul Kellam, Oliver G. Pybus
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13063-021-05584-z

Improving the continuity and coordination of ambulatory care through feedback and facilitated dialogue—a study protocol for a cluster-randomised trial to evaluate the ACD study (Accountable Care in Germany)
Cited by: 5
Author(s): Leonie Sundmacher, Ronja Flemming, Verena Leve, Isabel Geiger, Sebastian Franke, Thomas Czihal, Clemens Krause, Birgitt Wiese, Frank Meyer, Matthias Brittner, Johannes Pollmanns, Johannes J. Martin, Paul Brandenburg, Annemarie Schultz, Emmanuelle Brua, Udo Schneider, Olga Dortmann, Christoph Rupprecht, Stefan Wilm, Wiebke Schüttig
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.9632

The brain-derived neurotrophic factor Val66Met polymorphism increases segregation of structural correlation networks in healthy adult brains
Cited by: 4
Author(s): Issei Ueda, Kazuhiro Takemoto, Keita Watanabe, Katsuhisa Sugimoto, Atsuko Ikenouchi, Shingo Kakeda, Asuka Katsuki, Reiji Yoshimura, Yukunori Korogi
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.3321

Ranking of critical species to preserve the functionality of mutualistic networks using the k-core decomposition
Cited by: 14
Author(s): Javier García-Algarra, M. Pastor, José María Iriondo, Javier Galeano
Software Mentions: 2
Published: about 9 years ago

10.1186/s12859-019-2746-0

Topological and functional comparison of community detection algorithms in biological networks
Cited by: 37
Author(s): Sara Rahiminejad, Mano Ram Maurya, Shankar Subramaniam
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.8749

Potential of the economic valuation of soil-based ecosystem services to inform sustainable soil management and policy
Cited by: 20
Author(s): Bartosz Bartkowski, Stephan Bartke, Katharina Helming, Carsten Paul, Anja-Kristina Techen, Bernd Hansjürgens
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-020-03702-3

ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network
Cited by: 6
Author(s): Michelle Atallah, Varun Tandon, Kamir J Hiam-Galvez, Hunter Boyce, Michelle Hori, Waleed Atallah, Matthew H. Spitzer, Edgar G. Engleman, Parag Mallick
Software Mentions: 2
Published: almost 6 years ago

10.3390/pathogens9121077

Analysis of Risk Factors for African Swine Fever in Lombardy to Identify Pig Holdings and Areas Most at Risk of Introduction in Order to Plan Preventive Measures
Cited by: 2
Author(s): Silvia Bellini, Alessandra Scaburri, Marco Tironi, Stefania Calò
Software Mentions: 2
Published: over 5 years ago

10.3390/pathogens10080922

Transmission Dynamics of Bovine Viral Diarrhea Virus in Hokkaido, Japan by Phylogenetic and Epidemiological Network Approaches
Cited by: 3
Author(s): Shizuka Hirose, Kosuke Notsu, Satoshi Itō, Yoshihiro Sakoda, Norikazu Isoda
Software Mentions: 2
Published: about 5 years ago

10.1186/s40695-020-00060-1

Racial differences in lifestyle, demographic, and health factors associated with quality of life (QoL) in midlife women
Cited by: 4
Author(s): Brandi Patrice Smith, Esmeralda Cardoso-Mendoza, Jodi A. Flaws, Zeynep Madak-Erdoğan
Software Mentions: 2
Published: over 5 years ago

10.12688/wellcomeopenres.15268.2

Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors
Cited by: 5
Author(s): Moses Chapa Kiti, Alessia Melegaro, Ciro Cattuto, D. James Nokes
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.isci.2021.102846

Functional physiological phenotyping with functional mapping: A general framework to bridge the phenotype-genotype gap in plant physiology
Cited by: 5
Author(s): Arun K. Pandey, Libo Jiang, Menachem Moshelion, Sanbon Chaka Gosa, Ting Sun, Lin Qin, Rongling Wu, Pei Xu
Software Mentions: 2
Published: almost 5 years ago

10.3390/v12101087

Network Controllability-Based Prioritization of Candidates for SARS-CoV-2 Drug Repositioning
Cited by: 4
Author(s): Emily E. Ackerman, Jason E. Shoemaker
Software Mentions: 2
Published: almost 6 years ago

10.3390/v4123625

A Systems Biology Starter Kit for Arenaviruses
Cited by: 0
Author(s): Magali E. Droniou-Bonzom, Paula M. Cannon
Software Mentions: 2
Published: over 13 years ago

10.1186/s13567-014-0110-y

Not all cows are epidemiologically equal: quantifying the risks of bovine viral diarrhoea virus (BVDV) transmission through cattle movements
Cited by: 31
Author(s): M. Carolyn Gates, R.W. Humphry, George J. Gunn, Mark Woolhouse
Software Mentions: 2
Published: almost 12 years ago

10.1155/2021/8708023

Tear Film Proteome of Healthy Domestic Cats
Cited by: 2
Author(s): Jéssica Fontes Veloso, Paula Elisa Brandão Guedes, Luciana Carvalho Lacerda, Juliano Oliveira Santana, Irma Yuliana Mora-Ocampo, Carlos Priminho Pirovani, Arianne Pontes Oriá, Alexandre Dias Munhoz, Renata Santiago Alberto Carlos
Software Mentions: 2
Published: about 5 years ago

10.1186/s12859-019-2917-z

A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery
Cited by: 8
Author(s): Emily E. Ackerman, John F. Alcorn, Takeshi Hase, Jason E. Shoemaker
Software Mentions: 2
Published: about 7 years ago

10.1128/mSystems.00357-19

Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance
Cited by: 14
Author(s): Linwei Wu, Xiaoyu Shan, Si Chen, Qiuting Zhang, Qi Qi, Ziyan Qin, Huaqun Yin, Jizhong Zhou, Qiang He, Yunfeng Yang
Software Mentions: 2
Published: over 6 years ago

10.1007/s11252-017-0724-8

The application of graph theory and percolation analysis for assessing change in the spatial configuration of pond networks
Cited by: 10
Author(s): Ian Thornhill, Lesley Batty, Matthew J. Hewitt, Nikolai Friberg, Mark E. Ledger
Software Mentions: 2
Published: over 8 years ago

10.15252/msb.20156484

An inter‐species protein–protein interaction network across vast evolutionary distance
Cited by: 42
Author(s): Quan Zhong, Samuel Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick J. Haley, Ryan R. Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, S. Balaji, Lila Ghamsari, Michael A. Calderwood, Thomas Rolland, Benoît Charloteaux, Susan Lindquist, Albert‐László-L. Barabási, David E. Hill, Patrick Aloy, Michael E. Cusick, Yu Xia, Frederick P. Roth, Marc Vidal
Software Mentions: 2
Published: over 10 years ago

10.15252/msb.20188594

High‐resolution mapping of cancer cell networks using co‐functional interactions
Cited by: 61
Author(s): Evan A. Boyle, Jonathan K. Pritchard, William J. Greenleaf
Software Mentions: 2
Published: over 7 years ago

10.1002/mgg3.659

Prioritization and comprehensive analysis of genes related to major depressive disorder
Cited by: 12
Author(s): Yi Liu, Ping Fan, Shiyuan Zhang, Yidan Wang, Dan Liŭ
Software Mentions: 2
Published: over 7 years ago

10.3390/molecules26061664

PepFun: Open Source Protocols for Peptide-Related Computational Analysis
Cited by: 11
Author(s): Rodrigo Ochoa, Pilar Cossio
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.01213-20

Interkingdom Gut Microbiome and Resistome of the Cockroach Blattella germanica
Cited by: 11
Author(s): Rebeca Domínguez‐Santos, Ana Elena Pérez‐Cobas, Paolo Cuti, Vicente Pérez‐Brocal, Carlos García-Ferris, Andrés Moya, Amparo Latorre, Rosario Gil
Software Mentions: 2
Published: about 5 years ago

10.3390/molecules24061081

CuDDI: A CUDA-Based Application for Extracting Drug-Drug Interaction Related Substance Terms from PubMed Literature
Cited by: 2
Author(s): Ling Yin, Aditya Chandra Vothgod Ramachandra, Minh Pham, Yi-Cheng Tu, Feng Cheng
Software Mentions: 2
Published: over 7 years ago

10.1016/j.molcel.2016.07.008

Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer
Cited by: 57
Author(s): Natasha S. Latysheva, Matt Oates, Louis Maddox, Tilman Flock, Julian Gough, Marija Buljan, Robert J. Weatheritt, M. Madan Babu
Software Mentions: 2
Published: almost 10 years ago

10.1093/molbev/msv058

AnArabidopsisTranscriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors
Cited by: 129
Author(s): Jinpu Jin, Kongwang He, Xing Tang, Zhe Li, Le Lv, Yi Zhao, Jianxun Luo, Ge Gao
Software Mentions: 2
Published: over 11 years ago

10.1128/mSystems.00394-21

A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity
Cited by: 4
Author(s): Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu
Software Mentions: 2
Published: almost 5 years ago

10.1093/molbev/msz152

Coevolution of Sites under Immune Selection Shapes Epstein–Barr Virus Population Structure
Cited by: 19
Author(s): Fanny Wegner, Florent Lassalle, Daniel P. Depledge, François Balloux, Judith Breuer
Software Mentions: 2
Published: about 7 years ago

Projects: cran: igraph

Science Score: 100/100

Bonuses:

Papers Mentioning igraph 1,555