cran: igraph | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0230693

Urban foraging: Land management policy, perspectives, and potential
Cited by: 27
Author(s): Mallika Sardeshpande, Charlie M. Shackleton
Software Mentions: 2
Published: over 6 years ago

Marked Microevolution of a Unique Mycobacterium tuberculosis Strain in 17 Years of Ongoing Transmission in a High Risk Population
Cited by: 29
Author(s): Carolina Mehaffy, Jennifer L. Guthrie, David C. Alexander, Rebecca Stuart, Elizabeth Rea, Frances Jamieson
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0094022

Identification of Thyroid Carcinoma Related Genes with mRMR and Shortest Path Approaches
Cited by: 18
Author(s): Yaping Xu, Yue Deng, Zhenhua Ji, Haibin Liu, Yueyang Liu, Peisong Hu, Jian Wu, Jian‐Gao Fan
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0091724

The Impact of Movements and Animal Density on Continental Scale Cattle Disease Outbreaks in the United States
Cited by: 57
Author(s): Michael Buhnerkempe, Michael J. Tildesley, Tom Lindström, Daniel A. Grear, Katie Portacci, Ryan S. Miller, Jason E. Lombard, Marleen Werkman, Matthew James Keeling, Uno Wennergren, Colleen T. Webb
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0020284

Gene-Disease Network Analysis Reveals Functional Modules in Mendelian, Complex and Environmental Diseases
Cited by: 161
Author(s): Anna Bauer-Mehren, Markus Bundschus, Michael Rautschka, Miguel Ángel Mayer, Ferrán Sanz, Laura I. Furlong
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0221833

Social network analysis and the implications for Pontocaspian biodiversity conservation in Romania and Ukraine: A comparative study
Cited by: 10
Author(s): Aleksandre Gogaladze, Niels Raes, Jacobus C. Biesmeijer, Camelia Ionescu, Ana Bianca Pavel, Mikhail O. Son, Natalia Gozak, Vitaliy V. Anistratenko, Frank P. Wesselingh
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0048740

Between-Group Variation in Female Dispersal, Kin Composition of Groups, and Proximity Patterns in a Black-and-White Colobus Monkey (Colobus vellerosus)
Cited by: 40
Author(s): Eva C. Wikberg, Pascale Sicotte, Fernando A. Campos, Nelson Ting
Software Mentions: 2
Published: over 13 years ago

10.1186/s12864-016-2364-4

Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species
Cited by: 72
Author(s): Jeanneth Mosquera-Rendón, Ana Mercedes Rada, Sonia Cárdenas-Brito, Mauricio Corredor, Eliana Restrepo-Pineda, Alfonso Benı́tez-Páez
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-11-380

Response of the mosquito protein interaction network to dengue infection
Cited by: 44
Author(s): Xiang Guo, Yao–Zhong Xu, Guowu Bian, Andrew Pike, Yan Xie, Zhiyong Xi
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0099424

Human Genome Variation and the Concept of Genotype Networks
Cited by: 18
Author(s): Giovanni Marco Dall’Olio, Jaume Bertranpetit, Andreas Wagner, Hafid Laayouni
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0257449

Biofilm microbiome in extracorporeal membrane oxygenator catheters
Cited by: 6
Author(s): Yeuni Yu, Yun Hak Kim, Woo Hyun Cho, Bong Soo Son, Hye Ju Yeo
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0238626

Do economic shocks spread randomly?: A topological study of the global contagion network
Cited by: 4
Author(s): Tamás Sebestyén, Zita Iloskics
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2164-16-S7-S18

Systems analysis of gene ontology and biological pathways involved in post-myocardial infarction responses
Cited by: 10
Author(s): Nguyen T. Nguyen, Merry L. Lindsey, Yu Jin
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0174671

Collaboration patterns in the German political science co-authorship network
Cited by: 14
Author(s): Philip Leifeld, Sandra Andrea Wankmüller, Valentin Tim Zacharias Berger, Karin Ingold, Christiane Steiner
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0234990

The association between patient sharing network structure and healthcare costs
Cited by: 12
Author(s): Kimberley H. Geissler, Benjamin Lubin, Keith M. Marzilli Ericson
Software Mentions: 2
Published: about 6 years ago

10.16910/jemr.11.4.1

Using Eye Movement Data Visualization to Enhance Training of Air Traffic Controllers: A Dynamic Network Approach
Cited by: 5
Author(s): Saptarshi Mandal, Ziho Kang
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0179281

Quantifying the web browser ecosystem
Cited by: 6
Author(s): Sela Ferdman, Einat Minkov, Ron Bekkerman, David Gefen
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0176978

Metabolomic homeostasis shifts after callus formation and shoot regeneration in tomato
Cited by: 14
Author(s): Alka Kumari, Kamalika Ray, Sadhna Sadhna, Arun K. Pandey, Yellamaraju Sreelakshmi, Rameshwar Sharma
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0222222

Are unpopular children more likely to get sick? Longitudinal links between popularity and infectious diseases in early childhood
Cited by: 4
Author(s): Vidar Ulset, Nikolai Olavi Czajkowski, Brage Kraft, Pål Kraft, Ellen Wikenius, Thomas Haarklau Kleppestø, Mona Bekkhus
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0121368

Changes of Soil Particle Size Distribution in Tidal Flats in the Yellow River Delta
Cited by: 26
Author(s): Xiaofei Lyu, Junbao Yu, Mo Zhou, Ben Ma, Guangmei Wang, Chuanlang Zhan, Guoqi Han, Bo Guan, Huifeng Wu, Yunzhao Li, Wang De
Software Mentions: 2
Published: over 11 years ago

10.1186/s41256-018-0067-x

Scientific authorship and collaboration network analysis on malaria research in Benin: papers indexed in the web of science (1996–2016)
Cited by: 15
Author(s): Roseric Azondékon, Zachary J. Harper, Fiacre Agossa, Charles M. Welzig, Susan McRoy
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-018-4959-4

Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures
Cited by: 85
Author(s): Matej Medvecký, Darina Čejková, Ondřej Polanský, Daniela Karasova, Tereza Kubasová, Alois Čížek, Ivan Rychlı́k
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0214857

Building the drug-GO function network to screen significant candidate drugs for myasthenia gravis
Cited by: 5
Author(s): Shuang Li, Yuze Cao, Lei Li, Huixue Zhang, Xiaoyu Lu, Chunrui Bo, Xiaotong Kong, Zhaojun Liu, Lixia Chen, Peifang Liu, Yang Jiao, Jianjian Wang, Shangwei Ning, Lihua Wang
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0157868

Analysis of the Effect of Degree Correlation on the Size of Minimum Dominating Sets in Complex Networks
Cited by: 10
Author(s): Kazuhiro Takemoto, Tatsuya Akutsu
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-021-95516-3

Identifying structural connectivity priorities in eastern Paraguay’s fragmented Atlantic Forest
Cited by: 7
Author(s): Noé U. de la Sancha, Sarah A. Boyle, Nancy E. McIntyre
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0252470

Environmental drivers of reef manta ray (Mobula alfredi) visitation patterns to key aggregation habitats in the Maldives
Cited by: 6
Author(s): Joanna L. Harris, Guy M. W. Stevens
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0184532

Emergence of encounter networks due to human mobility
Cited by: 35
Author(s): Alejandro P. Riascos, José L. Mateos
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0099502

Co-Authorship and Bibliographic Coupling Network Effects on Citations
Cited by: 86
Author(s): Claudio Biscaro, Carlo Giupponi
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0016365

Detecting Instability in Animal Social Networks: Genetic Fragmentation Is Associated with Social Instability in Rhesus Macaques
Cited by: 53
Author(s): Brianne A. Beisner, Megan E. Jackson, Ashley Cameron, Brenda McCowan
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0110088

Active Semi-Supervised Community Detection Based on Must-Link and Cannot-Link Constraints
Cited by: 23
Author(s): Jianjun Cheng, Mingwei Leng, Longjie Li, Hanhai Zhou, Xiaoyun Chen
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0013139

Inference of Surface Membrane Factors of HIV-1 Infection through Functional Interaction Networks
Cited by: 9
Author(s): Samira Jaeger, Gökhan Ertaylan, David van Dijk, Ulf Leser, Peter M. A. Sloot
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0237864

The dynamics of global R&D collaboration networks in ICT: Does China catch up with the US?
Cited by: 5
Author(s): Thomas Scherngell, Charlotte Rohde, Martina Neuländtner
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0228613

Tropical marine sciences: Knowledge production in a web of path dependencies
Cited by: 22
Author(s): Stefan Partelow, Anna‐Katharina Hornidge, Paula Sobral, Moritz Stäbler, Achim Schlüter
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0046156

Combining Epidemiological and Genetic Networks Signifies the Importance of Early Treatment in HIV-1 Transmission
Cited by: 16
Author(s): Narges Zarrabi, Mattia Prosperi, R.G. Belleman, Manuela Colafigli, Andrea De Luca, Peter M. A. Sloot
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0225554

Location, location, location: Close ties among older continuing care retirement community residents
Cited by: 4
Author(s): Liat Ayalon, Inbal Yahav
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0187304

Identification of proteins associated with clinical and pathological features of proliferative diabetic retinopathy in vitreous and fibrovascular membranes
Cited by: 46
Author(s): Ingeborg Klaassen, Ewout de Vries, I. M. C. Vogels, Antoine H. C. van Kampen, Machteld I. Bosscha, David Steel, C. J. F. Van Noorden, S.Y. Lesnik–Oberstein, Reinier O. Schlingemann
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0255604

Examining the sources of evidence in e-cigarette policy recommendations: A citation network analysis of international public health recommendations
Cited by: 6
Author(s): Marissa J. Smith, Andrew J Baxter, Kathryn Skivington, Mark McCann, Shona Hilton, Srinivasa Vittal Katikireddi
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0142108

Network-Based and Binless Frequency Analyses
Cited by: 20
Author(s): Sybil Derrible, Nasir Ahmad
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0179915

Network analysis of pig movements: Loyalty patterns and contact chains of different holding types in Denmark
Cited by: 25
Author(s): Jana Schulz, Anette Boklund, Tariq Hisham Beshara Halasa, Nils Toft, Hartmut H. K. Lentz
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0241516

Processes and outcomes of diabetes mellitus care by different types of team primary care models
Cited by: 5
Author(s): Fangjian Guo, Yu Li Lin, Mukaila Raji, Bruce Leonard, Lin‐Na Chou, Yong Fang Kuo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0191604

Resolution of ranking hierarchies in directed networks
Cited by: 12
Author(s): Elisa Letizia, Paolo Barucca, Fabrizio Lillo
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0252152

Social network analysis and whole-genome sequencing to evaluate disease transmission in a large, dynamic population: A study of avian mycobacteriosis in zoo birds
Cited by: 2
Author(s): Carmel Witte, James H. Fowler, Wayne Pfeiffer, Laura L. Hungerford, Joséphine Braun, Jennifer Burchell, Rebecca Papendick, Bruce A. Rideout
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0248126

Topological indexes and community structure for urban mobility networks: Variations in a business day
Cited by: 3
Author(s): Jéssica D. Lamosa, Lívia Rodrigues Tomás, Marcos G. Quiles, Luciana de Resende Londe, Leonardo B. L. Santos, Elbert E. N. Macau
Software Mentions: 2
Published: over 5 years ago

10.1186/s12862-019-1446-8

Host specialisation and disparate evolution of Pyrenophora teres f. teres on barley and barley grass
Cited by: 7
Author(s): Celeste C. Linde, Leon M. Smith
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0102633

Phylodynamic Analysis Reveals CRF01_AE Dissemination between Japan and Neighboring Asian Countries and the Role of Intravenous Drug Use in Transmission
Cited by: 16
Author(s): Teiichiro Shiino, Junko Hattori, Yoshiyuki Yokomaku, Yoshinori Iwatani, Wataru Sugiura
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0213039

GenomeGraphR: A user-friendly open-source web application for foodborne pathogen whole genome sequencing data integration, analysis, and visualization
Cited by: 20
Author(s): Moez Sanaa, Régis Pouillot, Francisco Garcés Vega, Errol Strain, Jane M. Van Doren
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0068581

The Community Structure of the European Network of Interlocking Directorates 2005–2010
Cited by: 31
Author(s): Eelke M. Heemskerk, Fabio Daolio, Marco Tomassini
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0199530

A cytokine protein-protein interaction network for identifying key molecules in rheumatoid arthritis
Cited by: 10
Author(s): Venugopal Panga, Srivatsan Raghunathan
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0064317

An Open-Access Modeled Passenger Flow Matrix for the Global Air Network in 2010
Cited by: 37
Author(s): Zhengjing Huang, Wu Xiao, Andrés J. García, Timothy J. Fik, Andrew J. Tatem
Software Mentions: 2
Published: about 13 years ago

10.1186/1471-2148-11-89

Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes
Cited by: 24
Author(s): Corey Hudson, Gavin C. Conant
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0036465

Identification and Validation of Ifit1 as an Important Innate Immune Bottleneck
Cited by: 29
Author(s): Jason McDermott, Keri B. Vartanian, Hugh D. Mitchell, Susan L. Stevens, Antonio Sanfilippo, Mary P. Stenzel-Poore
Software Mentions: 2
Published: about 14 years ago

10.1155/2014/487069

An Improved<i>Physarum polycephalum</i>Algorithm for the Shortest Path Problem
Cited by: 10
Author(s): Xiaoge Zhang, Qing Wang, Andrew Adamatzky, Felix T.S. Chan, Sankaran Mahadevan, Yong Deng
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0210148

Validation of modified radio-frequency identification tag firmware, using an equine population case study
Cited by: 4
Author(s): Rachael M. Milwid, Terri L. O’Sullivan, Zvonimir Poljak, Marek Laskowski, Amy L. Greer
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0014673

Controlling the Response: Predictive Modeling of a Highly Central, Pathogen-Targeted Core Response Module in Macrophage Activation
Cited by: 33
Author(s): Jason McDermott, Michelle Archuleta, Brian D. Thrall, Joshua N. Adkins, Katrina M. Waters
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0141420

A Network Approach to Bipolar Symptomatology in Patients with Different Course Types
Cited by: 29
Author(s): M.A. Koenders, Roy de Kleijn, Erik J. Giltay, Bernet M. Elzinga, Philip Spinhoven, Annet T. Spijker
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0198525

Exploring novel key regulators in breast cancer network
Cited by: 18
Author(s): Shahnawaz Ali, Md. Zubbair Malik, Keilash Chirom, Romana Ishrat
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0196211

Social network analysis of stakeholder networks from two community-based obesity prevention interventions
Cited by: 28
Author(s): Jaimie McGlashan, Melanie Nichols, Ariella R. Korn, Lynne Millar, Jennifer B. Marks, Andrew Sanigorski, Mark C. Pachucki, Boyd Swinburn, Steven Allender, Christina D. Economos
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0222357

Bourdieu, networks, and movements: Using the concepts of habitus, field and capital to understand a network analysis of gender differences in undergraduate physics
Cited by: 10
Author(s): Steven Martin Turnbull, Kirsten Locke, Frédérique Vanholsbeeck, Dion R. J. O’Neale
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0205122

Social network properties predict chronic aggression in commercial pig systems
Cited by: 38
Author(s): Simone Foister, Andrea Doeschl‐Wilson, R. Roehe, Gareth Arnott, Laura Boyle, Simon P. Turner
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0142407

Coevolved Mutations Reveal Distinct Architectures for Two Core Proteins in the Bacterial Flagellar Motor
Cited by: 8
Author(s): Alessandro Pandini, Jens Kleinjung, Shafqat Rasool, Shahid Khan
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0194901

Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species’ global distribution: Combining classical population genetics and network analyses
Cited by: 10
Author(s): Yael S. Rodger, Gili Greenbaum, Micha Silver, Shirli Bar‐David, Gidon Winters
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0040337

Information Processing in Social Insect Networks
Cited by: 96
Author(s): James S. Waters, Jennifer H. Fewell
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0140030

Anatomical Network Comparison of Human Upper and Lower, Newborn and Adult, and Normal and Abnormal Limbs, with Notes on Development, Pathology and Limb Serial Homology vs. Homoplasy
Cited by: 28
Author(s): Rui Diogo, Borja Esteve‐Altava, Christopher M. Smith, Julia C. Boughner, Diego Rasskin‐Gutman
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0060982

Autistic Traits in Neurotypical Adults: Correlates of Graph Theoretical Functional Network Topology and White Matter Anisotropy Patterns
Cited by: 30
Author(s): András Jakab, Miklós Emri, Tamás Spisák, Anita Szemán-Nagy, Mónika Béres, Sándor Attila Kis, Péter Molnár, Ervin Berényi
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0208227

The geographic evolution of political cleavages in Switzerland: A network approach to assessing levels and dynamics of polarization between local populations
Cited by: 3
Author(s): Shin Alexandre Koseki
Software Mentions: 2
Published: over 7 years ago

10.1093/cercor/bhz244

Ketamine Restores Thalamic-Prefrontal Cortex Functional Connectivity in a Mouse Model of Neurodevelopmental Disorder-Associated 2p16.3 Deletion
Cited by: 11
Author(s): Rebecca Hughes, Jayde Whittingham-Dowd, Rachel E Simmons, Steven J. Clapcote, Susan Broughton, Neil Dawson
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0152123

Who Is Spreading Avian Influenza in the Moving Duck Flock Farming Network of Indonesia?
Cited by: 18
Author(s): Joerg Henning, Dirk U. Pfeiffer, M.A. Stevenson, Didik Yulianto, W. Priyono, J. Meers
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0125725

Using Graph Components Derived from an Associative Concept Dictionary to Predict fMRI Neural Activation Patterns that Represent the Meaning of Nouns
Cited by: 5
Author(s): Hiroyuki Akama, Masakazu Miyake, Jason J. Jung, Brian Murphy
Software Mentions: 2
Published: about 11 years ago

10.1038/s42003-020-01190-y

Network pharmacology suggests biochemical rationale for treating COVID-19 symptoms with a Traditional Chinese Medicine
Cited by: 15
Author(s): Denghai Zhang, Xue Zhang, Bin Peng, Shengqiong Deng, Yufang Wang, Lin Yang, Kai-zheng Zhang, Changquan Ling, Wu Kunlun
Software Mentions: 2
Published: almost 6 years ago

10.1038/s42003-021-02260-5

Serotonin signaling modulates aging-associated metabolic network integrity in response to nutrient choice in Drosophila melanogaster
Cited by: 3
Author(s): Yang Lyu, Daniel Promislow, Scott D. Pletcher
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0038039

Transcriptome Profiling of Citrus Fruit Response to Huanglongbing Disease
Cited by: 141
Author(s): Federico Martinelli, Sandra L. Uratsu, Ute Albrecht, Russell L. Reagan, My L. Phu, Monica Britton, Vincent Buffalo, Joseph Fass, Elizabeth Leicht, Wenwei Zhao, Dazhen Lin, Raissa M. D’Souza, Cristina E. Davis, Kim D. Bowman, Abhaya M. Dandekar
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0027009

Modeling the Mechanism of Action of a DGAT1 Inhibitor Using a Causal Reasoning Platform
Cited by: 24
Author(s): Ahmed Enayetallah, Daniel Ziemek, Michael T. Leininger, Ranjit Randhawa, Jinlin Yang, Tara B. Manion, Dawn Mather, William J. Zavadoski, Max Kühn, Judith L. Treadway, Shelly Ann G. des Etages, E. Michael Gibbs, Nigel Greene, Claire M. Steppan
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2407-12-331

A systems biology approach to the global analysis of transcription factors in colorectal cancer
Cited by: 25
Author(s): Meeta Pradhan, Nagendra Prasad, Mathew Palakal
Software Mentions: 2
Published: almost 14 years ago

10.1186/s40064-016-2022-y

The topology of the directed clique complex as a network invariant
Cited by: 24
Author(s): Paolo Masulli, Alessandro E. P. Villa
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0211227

Dissecting a novel allosteric mechanism of cruzain: A computer-aided approach
Cited by: 13
Author(s): Lilian Hernández Alvarez, Diego E. B. Gomes, Jorge Enrique Hernández González, Pedro Geraldo Pascutti
Software Mentions: 2
Published: over 7 years ago

10.1038/s42003-019-0440-4

Combined network analysis and machine learning allows the prediction of metabolic pathways from tomato metabolomics data
Cited by: 52
Author(s): David Toubiana, Rami Puzis, Lingling Wen, Noga Sikron, Assylay Kurmanbayeva, Aigerim Soltabayeva, María del Mar Rubio Wilhelmi, Nir Sade, Aaron Fait, Moshe Sagi, Eduardo Blumwald, Yuval Elovici
Software Mentions: 2
Published: about 7 years ago

10.1186/s40649-016-0029-8

Factorization threshold models for scale-free networks generation
Cited by: 2
Author(s): Akmal Artikov, Aleksandr Dorodnykh, Yana Kashinskaya, Egor Samosvat
Software Mentions: 2
Published: almost 10 years ago

10.1111/cobi.13580

Assessing the current state of ecological connectivity in a large marine protected area system
Cited by: 18
Author(s): Kimberly A. Roberts, Carly N. Cook, Jutta Beher, Eric A. Treml
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.dib.2020.105629

A dataset of eco-evidence tools to inform early-stage environmental impact assessments of hydropower development
Cited by: 0
Author(s): Ryan A. McManamay, Esther S. Parish, Christopher R. DeRolph
Software Mentions: 2
Published: about 6 years ago

10.1093/database/baaa018

Integrated querying and version control of context-specific biological networks
Cited by: 4
Author(s): Tyler Cowman, Mustafa Coşkun, Ananth Grama, Mehmet Koyutürk
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0198222

On an algorithmic definition for the components of the minimal cell
Cited by: 2
Author(s): Octavio Martínez, M. Humberto Reyes-Valdés
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pntd.0005659

Challenges in developing methods for quantifying the effects of weather and climate on water-associated diseases: A systematic review
Cited by: 35
Author(s): Giovanni Lo Iacono, Ben Armstrong, Lora E. Fleming, Richard Elson, Sari Kovats, Sotiris Vardoulakis, Gordon Nichols
Software Mentions: 2
Published: about 9 years ago

10.3390/diagnostics10080586

Identifying the Salient Genes in Microarray Data: A Novel Game Theoretic Model for the Co-Expression Network
Cited by: 2
Author(s): Papori Neog Bora, Vishwa Jyoti Baruah, Surajit Borkotokey, Loyimee Gogoi, Priyakshi Mahanta, Ankumon Sarmah, Rajnish Kumar, Stefano Moretti
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-12-149

Fast network centrality analysis using GPUs
Cited by: 99
Author(s): Zhiao Shi, Bing Zhang
Software Mentions: 2
Published: about 15 years ago

10.1242/dmm.042101

Integrated lipidomic and transcriptomic analyses identify altered nerve triglycerides in mouse models of prediabetes and type 2 diabetes
Cited by: 40
Author(s): Phillipe D. O’Brien, Kai Guo, Stéphanie Eid, Amy E. Rumora, Lucy M. Hinder, John M. Hayes, Faye E. Mendelson, Junguk Hur, Eva L. Feldman
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pntd.0006070

The introduction of dengue follows transportation infrastructure changes in the state of Acre, Brazil: A network-based analysis
Cited by: 41
Author(s): Raquel Martins Lana, Tiago França Melo de Lima, Nildimar Alves Honório, Cláudia Torres Codeço
Software Mentions: 2
Published: over 8 years ago

10.1016/j.eclinm.2021.100968

HIV-1 Transmission linkages among persons with incident infection to inform public health surveillance
Cited by: 7
Author(s): Ann M. Dennis, Simon D. W. Frost, Kimberly Enders, Andrew Cressman, Erik Volz, Nicole Adams, William C. Miller, Myron S. Cohen, Victoria Mobley, Erika Samoff, Joseph J. Eron
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pmed.1001810

Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis
Cited by: 187
Author(s): Soo-Yon Rhee, José Luis Santiago Blanco, Michael R. Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese, Raph L Hamers, Silvia Bertagnolio, Tobias F. Rinke de Wit, Avelin F. Aghokeng, Jan Albert, Radko Avi, Santiago Ávila‐Ríos, Pascal Bessong, James Brooks, Charles A. Boucher, Zabrina L. Brumme, Michael P. Busch, Hermann Bussmann, Marie Laure Chaix, Bum Sik Chin, Toni Thomas d’Aquin, Cillian F. De Gascun, Anne Derache, Diane Descamps, Alaka Deshpande, Cyrille F. Djoko, Susan H. Eshleman, Hervé Fleury, Pierre Frange, Seiichiro Fujisaki, P. Richard Harrigan, Junko Hattori, África Holguín, Gillian Hunt, Hiroshi Ishiguro, Pontiano Kaleebu, David Katzenstein, Sasisopin Kiertiburanakul, Jerome H. Kim, Sung Soon Kim, Yanpeng Li, Irja Lutsar, Lynn Morris, Nicaise Ndembi, Kee Peng Ng, Ramesh Paranjape, Martine Peeters, Mario Poljak, Matt A. Price, Manon Ragonnet‐Cronin, Gustavo Reyes‐Terán, Morgane Rolland, Sunee Sirivichayakul, Davey M. Smith, Marcelo A. Soares, Vincent Soriano, Deogratius Ssemwanga, Maja Stanojević, Mariane A. Stefani, Wataru Sugiura, Somnuek Sungkanuparph, Amílcar Tanuri, Kok Keng Tee, Hong Ha M. Truong, David van de Vijver, Nicole Vidal, Chunfu Yang, Rongge Yang, Gonzalo Yebra, John P. A. Ioannidis, Anne‐Mieke Vandamme, Robert W. Shafer
Software Mentions: 2
Published: over 11 years ago

10.1186/s12859-018-2453-2

A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen
Cited by: 3
Author(s): Helen N. Catanese, Kelly A. Brayton, Assefaw H. Gebremedhin
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pgen.1002612

Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations
Cited by: 109
Author(s): David Toubiana, Yaniv Semel, Takayuki Tohge, Romina Beleggia, Luigi Cattivelli, Leah Rosental, Zoran Nikoloski, Dani Zamir, Alisdair R. Fernie, Aaron Fait
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2105-11-343

A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network
Cited by: 92
Author(s): Zhu-Hong You, Zhimin Yin, Kyungsook Han, Dongqing Huang, Xiaobo Zhou
Software Mentions: 2
Published: about 16 years ago

10.3389/fmicb.2012.00278

Phylodynamic analysis of a viral infection network
Cited by: 7
Author(s): Teiichiro Shiino
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pcbi.1004467

Genome-Wide Detection and Analysis of Multifunctional Genes
Cited by: 35
Author(s): Yuri Pritykin, Dario Ghersi, Mona Singh
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmicb.2020.556002

Effects of Plant and Soil Characteristics on Phyllosphere and Rhizosphere Fungal Communities During Plant Development in a Copper Tailings Dam
Cited by: 15
Author(s): Tong Jia, Yushan Yao, Tingyan Guo, Ruihong Wang, Bo Chai
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1007434

Nine quick tips for analyzing network data
Cited by: 21
Author(s): Vincent Miele, Catherine Matias, Stéphane Robin, Stéphane Dray
Software Mentions: 2
Published: over 6 years ago

10.1155/2019/2146391

Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice
Cited by: 10
Author(s): Na Li, Yang Wang, Jing Lü, Chuan Liu
Software Mentions: 2
Published: over 7 years ago

10.1186/s13063-021-05584-z

Improving the continuity and coordination of ambulatory care through feedback and facilitated dialogue—a study protocol for a cluster-randomised trial to evaluate the ACD study (Accountable Care in Germany)
Cited by: 5
Author(s): Leonie Sundmacher, Ronja Flemming, Verena Leve, Isabel Geiger, Sebastian Franke, Thomas Czihal, Clemens Krause, Birgitt Wiese, Frank Meyer, Matthias Brittner, Johannes Pollmanns, Johannes J. Martin, Paul Brandenburg, Annemarie Schultz, Emmanuelle Brua, Udo Schneider, Olga Dortmann, Christoph Rupprecht, Stefan Wilm, Wiebke Schüttig
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pcbi.1003881

Linear Motif-Mediated Interactions Have Contributed to the Evolution of Modularity in Complex Protein Interaction Networks
Cited by: 16
Author(s): Inhae Kim, Heetak Lee, Seong Kyu Han, Sanguk Kim
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pcbi.1008832

Collective predator evasion: Putting the criticality hypothesis to the test
Cited by: 17
Author(s): Pascal P. Klamser, Pawel Romanczuk
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1006525

Steered molecular dynamics simulations reveal critical residues for (un)binding of substrates, inhibitors and a product to the malarial M1 aminopeptidase
Cited by: 8
Author(s): Daniel Moore, Conor Brines, Heather Jewhurst, John P. Dalton, Irina G. Tikhonova
Software Mentions: 2
Published: over 7 years ago

Projects: cran: igraph

Science Score: 100/100

Bonuses:

Papers Mentioning igraph 1,555