Ecosyste.ms: Papers

10.3390/e23091204

Granger Causality among Graphs and Application to Functional Brain Connectivity in Autism Spectrum Disorder
Cited by: 4
Author(s): Adele Ribeiro, Maciel Calebe Vidal, João Ricardo Sato, André Fujita
Software Mentions: 2
Published: about 3 years ago

10.3390/ijerph18168388

The Structure of Social Support in Confidant Networks: Implications for Depression
Cited by: 4
Author(s): Liyuan Wang, Lindsay E. Young, Lynn C. Miller
Software Mentions: 2
Published: over 3 years ago

10.1038/srep44052

Individual Movement Strategies Revealed through Novel Clustering of Emergent Movement Patterns
Cited by: 19
Author(s): Denis Valle, Sreten Cvetojevic, Ellen P. Robertson, Brian E. Reichert, Hartwig H. Hochmair, Robert J. Fletcher
Software Mentions: 2
Published: over 7 years ago

10.1186/s12977-020-00541-1

Koala retrovirus diversity, transmissibility, and disease associations
Cited by: 12
Author(s): HaoQiang Zheng, Yi Pan, Shaohua Tang, Geoffrey W. Pye, Cynthia K. Stadler, Larry Vogelnest, Kimberly Vinette Herrin, Bruce A. Rideout, William M. Switzer
Software Mentions: 2
Published: about 4 years ago

10.3389/fgene.2020.00659

Comprehensive Network Analysis Reveals Alternative Splicing-Related lncRNAs in Hepatocellular Carcinoma
Cited by: 8
Author(s): Junqing Wang, Xiuquan Wang, Akshay Bhat, Yixin Chen, Keli Xu, Yin‐Yuan Mo, S. Stephen Yi, Yunyun Zhou
Software Mentions: 2
Published: over 4 years ago

10.1038/srep08298

Anatomical networks reveal the musculoskeletal modularity of the human head
Cited by: 57
Author(s): Borja Esteve‐Altava, Rui Diogo, Christopher M. Smith, Julia C. Boughner, Diego Rasskin‐Gutman
Software Mentions: 2
Published: almost 10 years ago

10.1038/sdata.2018.37

A dataset on human navigation strategies in foreign networked systems
Cited by: 3
Author(s): Attila Kő̈rösi, Attila Csoma, Gábor Rétvári, Zalán Heszberger, József Bı́ró, János Tapolcai, István Pelle, Dávid Klajbár, Márton Novák, Valentina Halasi, András Gulyás
Software Mentions: 2
Published: over 6 years ago

10.3390/e22121383

Research on Community Detection in Complex Networks Based on Internode Attraction
Cited by: 5
Author(s): Jinfang Sheng, Cheng Liu, Long Chen, Bin Wang, Junkai Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00442-021-04967-y

The role of habitat configuration in shaping animal population processes: a framework to generate quantitative predictions
Cited by: 8
Author(s): Peng He, Pierre‐Olivier Montiglio, Marius Somveille, Maurício Cantor, Dan Farine
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-017-05855-3

Population structure of an orchid mycorrhizal fungus with genus-wide specificity
Cited by: 14
Author(s): Monica Ruibal, Yann Triponez, Leon M. Smith, Rod Peakall, Celeste C. Linde
Software Mentions: 2
Published: over 7 years ago

10.1186/s41544-020-00057-y

nSARS-Cov-2, pulmonary edema and thrombosis: possible molecular insights using miRNA-gene circuits in regulatory networks
Cited by: 5
Author(s): Pankaj Khurana, Apoorv Gupta, R. Sugadev, Y. K. Sharma, Rajeev K. Varshney, Lilly Ganju, Bharani Kumar
Software Mentions: 2
Published: about 4 years ago

10.1038/s41388-018-0651-z

The coordinated action of VCP/p97 and GCN2 regulates cancer cell metabolism and proteostasis during nutrient limitation
Cited by: 32
Author(s): Katarzyna Parzych, Paula Saavedra‐García, Gabriel N. Valbuena, Hibah A Al-Sadah, Mark E. Robinson, Lucy Penfold, Desislava M Kuzeva, Angie Ruiz-Tellez, Sandra Loaiza, Viktoria Holzmann, Valentina S Caputo, David C. Johnson, Martin Kaiser, Anastasios Karadimitris, Eric Lam, Éric Chevet, Niklas Feldhahn, Hector C. Keun, Holger W. Auner
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-017-06624-y

Identification of clusters of rapid and slow decliners among subjects at risk for Alzheimer’s disease
Cited by: 60
Author(s): Dragan Gamberger, Nada Lavrač, Shantanu Srivatsa, Rudolph E. Tanzi, P. Murali Doraiswamy
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-07202-y

Dynamics of the Global Wheat Trade Network and Resilience to Shocks
Cited by: 53
Author(s): Kathyrn R. Fair, Chris T. Bauch, Madhur Anand
Software Mentions: 2
Published: over 7 years ago

10.1111/eva.13084

Y‐chromosome haplotypes are associated with variation in size and age at maturity in male Chinook salmon
Cited by: 11
Author(s): Garrett J. McKinney, James E. Seeb, Carita E. Pascal, Daniel E. Schindler, Sara E. Gilk‐Baumer, Lisa W. Seeb
Software Mentions: 2
Published: about 4 years ago

10.1186/s12931-018-0952-3

SOX30 specially prevents Wnt-signaling to suppress metastasis and improve prognosis of lung adenocarcinoma patients
Cited by: 13
Author(s): Fei Han, Mingqian Zhang, Wenbin Liu, Limei Sun, Xianglin Hao, Yin Li, Xiao Jiang, Jia Cao, Jinyi Liu
Software Mentions: 2
Published: almost 6 years ago

10.2196/12914

Identifying Influence Agents That Promote Physical Activity Through the Simulation of Social Network Interventions: Agent-Based Modeling Study
Cited by: 24
Author(s): Thabo J. van Woudenberg, Bojan Simoski, Eric Fernandes de Mello Araújo, Kirsten E. Bevelander, William J. Burk, Crystal R. Smit, Laura Buijs, Michel Klein, Moniek Buijzen
Software Mentions: 2
Published: over 5 years ago

10.1038/srep16439

Early maternal loss affects social integration of chimpanzees throughout their lifetime
Cited by: 27
Author(s): Elfriede Kalcher-Sommersguter, Signe Preuschoft, Cornelia Franz-Schaider, Charlotte K. Hemelrijk, Karl Crailsheim, Jorg J. M. Massen
Software Mentions: 2
Published: about 9 years ago

10.2196/18457

Two Decades of Research Using Taiwan’s National Health Insurance Claims Data: Bibliometric and Text Mining Analysis on PubMed
Cited by: 23
Author(s): Sheng Feng Sung, Cheng‐Yang Hsieh, Yu Hu
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-017-12325-3

Drug enrichment and discovery from schizophrenia genome-wide association results: an analysis and visualisation approach
Cited by: 51
Author(s): Héléna A. Gaspar, Gerome Breen
Software Mentions: 2
Published: about 7 years ago

10.18632/oncotarget.7293

Mutanome and expression of immune response genes in microsatellite stable colon cancer
Cited by: 6
Author(s): Rebeca Sanz‐Pamplona, Raúl Gil-Hoyos, Adriana López-Dóriga, M. Henar Alonso, Susanna Aussó, David G. Mollevı́, Cristina Santos, Xavier Sanjuán, Ramón Salazar, Ramón Alemany, Vı́ctor Moreno
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep31790

Infection-induced behavioural changes reduce connectivity and the potential for disease spread in wild mice contact networks
Cited by: 145
Author(s): Patrícia C. Lopes, Per Block, Barbara König
Software Mentions: 2
Published: over 8 years ago

10.2196/jmir.7643

Identifying Opinion Leaders to Promote Organ Donation on Social Media: Network Study
Cited by: 34
Author(s): Jingyuan Shi, Charles T. Salmon
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-15647-4

Network-based analysis of diagnosis progression patterns using claims data
Cited by: 28
Author(s): Eugene Jeong, Kyungmin Ko, Seungbin Oh, Hyun Wook Han
Software Mentions: 2
Published: about 7 years ago

10.1155/2020/4323989

Korean Traditional Medicine in Treating Patients with Mild Cognitive Impairment: A Multicenter Prospective Observational Case Series
Cited by: 9
Author(s): Yujin Choi, Young Eun Kim, Ui Min Jerng, Hwan Kim, Sung Ik Lee, Ga-Na Kim, Seung-Hun Cho, Hyung Won Kang, In Chul Jung, Kyungsun Han, Jun-Hwan Lee
Software Mentions: 2
Published: over 4 years ago

10.1038/srep17357

A novel algorithm for analyzing drug-drug interactions from MEDLINE literature
Cited by: 19
Author(s): Ling Yin, Dan Shen, Maxwell Pietsch, Chetan Nagar, Zayd Fadli, Hong Huang, Yi-Cheng Tu, Feng Cheng
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-19532-6

Phosphorylation of the Transient Receptor Potential Ankyrin 1 by Cyclin-dependent Kinase 5 affects Chemo-nociception
Cited by: 19
Author(s): Bradford Hall, Michaela Procházková, Matthew R. Sapio, Paul D. Minetos, Natalya Kurochkina, B. Binukumar, Niranjana D. Amin, Anita Terse, John Joseph, Stephen J. Raithel, Andrew J. Mannes, Harish C. Pant, Man‐Kyo Chung, Michael J. Iadarola, Ashok B. Kulkarni
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep41817

Drivers of Cape Verde archipelagic endemism in keyhole limpets
Cited by: 12
Author(s): Regina L. Cunha, Jorge Assis, Céline Madeira, Rui Seabra, Fernando P. Lima, Evandro P. Lopes, Suzanne T. Williams, Rita Castilho
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-20215-5

Comprehensive network of miRNA-induced intergenic interactions and a biological role of its core in cancer
Cited by: 23
Author(s): Vladimir Galatenko, A. V. Galatenko, Timur R. Samatov, Andrey Turchinovich, M. Yu. Shkurnikov, J. A. Makarova, Alexander G. Tonevitsky
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2020.01887

FcRn Overexpression Expands Diversity of the Humoral Immune Response in bFcRn Transgenic Mice
Cited by: 2
Author(s): Bence Szikora, Anita Marx, Péter K. Jani, Orsolya Pipek, Viktor Müller, István Csabai, Imre Kacskovıcs
Software Mentions: 2
Published: over 4 years ago

10.1038/srep19845

Chimera-like States in Modular Neural Networks
Cited by: 140
Author(s): Johanne Hizanidis, Nikos E. Kouvaris, Gorka Zamora-López, Albert Díaz‐Guilera, Chris G. Antonopoulos
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep21580

Integrated microRNA-mRNA analyses reveal OPLL specific microRNA regulatory network using high-throughput sequencing
Cited by: 37
Author(s): Chen Xu, Yu Chen, Hao Zhang, Yuanyuan Chen, Xiantao Shen, Changgui Shi, Yang Liu, Wen Yuan
Software Mentions: 2
Published: almost 9 years ago

10.1098/rsos.200950

Higher sociability leads to lower reproductive success in female kangaroos
Cited by: 11
Author(s): Clementine S. Menz, Alecia J. Carter, Emily C. Best, Natalie J. Freeman, Ross G. Dwyer, Simone P. Blomberg, Anne W. Goldizen
Software Mentions: 2
Published: over 4 years ago

10.1098/rsos.200116

The craniomandibular anatomy of the early archosauriform<i>Euparkeria capensis</i>and the dawn of the archosaur skull
Cited by: 20
Author(s): Roland B. Sookias, David W. Dilkes, Gabriela Sobral, Roger M. H. Smith, Frederik P Wolvaardt, Andrea B. Arcucci, Bhart‐Anjan S. Bhullar, Ingmar Werneburg
Software Mentions: 2
Published: over 4 years ago

10.1038/srep35432

Widespread occurrence of lysine methylation in Plasmodium falciparum proteins at asexual blood stages
Cited by: 18
Author(s): Inderjeet Kaur, Mohammad Zeeshan, Ekta Saini, Abhinav Kaushik, Asif Mohmmed, Dinesh Gupta, Pawan Malhotra
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2021.597983

Identification of the Key Regulators of Spina Bifida Through Graph-Theoretical Approach
Cited by: 2
Author(s): Naaila Tamkeen, Suliman Yousef Alomar, Saeed Awad M Alqahtani, Abdullah Al-jurayyan, Anam Farooqui, Safia Tazyeen, Nadeem Ahmad, Romana Ishrat
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-25262-6

First anatomical network analysis of fore- and hindlimb musculoskeletal modularity in bonobos, common chimpanzees, and humans
Cited by: 6
Author(s): Rui Diogo, Júlia Molnár, Campbell Rolian, Borja Esteve‐Altava
Software Mentions: 2
Published: over 6 years ago

10.1098/rsos.180719

Contact chains of cattle farms in Great Britain
Cited by: 21
Author(s): Helen R. Fielding, Trevelyan J. McKinley, Matthew J. Silk, Richard J. Delahay, Robbie A. McDonald
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep22470

Discovering communities in complex networks by edge label propagation
Cited by: 37
Author(s): Wei Liu, Xingpeng Jiang, Matteo Pellegrini, Xiaofan Wang
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-28375-0

Assessment of the key regulatory genes and their Interologs for Turner Syndrome employing network approach
Cited by: 25
Author(s): Anam Farooqui, Safia Tazyeen, Mohd Murshad Ahmed, Aftab Alam, Shahnawaz Ali, Md. Zubbair Malik, Romana Ishrat
Software Mentions: 2
Published: over 6 years ago

10.1038/srep24160

Deletion and low expression of NFKBIA are associated with poor prognosis in lower-grade glioma patients
Cited by: 14
Author(s): Gabriela Sarti Kinker, Andrew Maltez Thomas, Vinicius Jardim Carvalho, Felipe Prata Lima, André Fujita
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.13627

Identification of laryngeal cancer prognostic biomarkers using an inflammatory gene-related, competitive endogenous RNA network
Cited by: 19
Author(s): Qun He, Linli Tian, Hao Jiang, Jiarui Zhang, Qiang Li, Yanan Sun, Jianwen Zhao, Huijun Li, Ming Liu
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-31110-4

Computational characterization and identification of human polycystic ovary syndrome genes
Cited by: 14
Author(s): Xingzhong Zhang, Yanli Pang, Xian Wang, Yanhui Li
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.02863

Buffered Qualitative Stability explains the robustness and evolvability of transcriptional networks
Cited by: 34
Author(s): Luca Albergante, J. Julian Blow, T. J. Newman
Software Mentions: 2
Published: about 10 years ago

10.1098/rsos.170808

Seasonality and pathogen transmission in pastoral cattle contact networks
Cited by: 40
Author(s): Kimberly VanderWaal, Marie L. J. Gilbertson, Sharon Okanga, Brian F. Allan, Meggan E. Craft
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep24570

Uncovering disease mechanisms through network biology in the era of Next Generation Sequencing
Cited by: 31
Author(s): Janet Piñero, Ariel Berenstein, Abel González-Pérez, Ariel Chernomoretz, Laura I. Furlong
Software Mentions: 2
Published: over 8 years ago

10.1111/ele.12898

Contact networks structured by sex underpin sex‐specific epidemiology of infection
Cited by: 29
Author(s): Matthew J. Silk, Nicola Weber, Lucy C. Steward, David J. Hodgson, Mike Boots, Darren P. Croft, Richard J. Delahay, Robbie A. McDonald
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep36572

A Comprehensive Characterization of the Function of LincRNAs in Transcriptional Regulation Through Long-Range Chromatin Interactions
Cited by: 19
Author(s): Liuyang Cai, Huidan Chang, Yaping Fang, Guoliang Li
Software Mentions: 2
Published: about 8 years ago

10.2196/21680

Predictors of Health Information Seeking Behavior: A Systematic Review and Network Analysis (Preprint)
Cited by: 16
Author(s): Ardalan Mirzaei, Parisa Aslani, Edward Luca, Carl R. Schneider
Software Mentions: 2
Published: over 4 years ago

10.1016/j.epidem.2015.02.008

Controlling infectious disease through the targeted manipulation of contact network structure
Cited by: 59
Author(s): M. Carolyn Gates, Mark Woolhouse
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-018-34846-1

Brain structural connectivity and neuroticism in healthy adults
Cited by: 14
Author(s): Issei Ueda, Shingo Kakeda, Keita Watanabe, Katsuhisa Sugimoto, Natsuki Igata, Junji Moriya, Kazuhiro Takemoto, Asuka Katsuki, Reiji Yoshimura, Osamu Abe, Yukunori Korogi
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2018.01785

Simulation of the Dynamics of Primary Immunodeficiencies in B Cells
Cited by: 2
Author(s): Gabriel Teku, Mauno Vihinen
Software Mentions: 2
Published: over 6 years ago

10.1007/s00213-018-5000-y

A cFos activation map of remote fear memory attenuation
Cited by: 75
Author(s): Bianca A. Silva, Allison M. Burns, Johannes Gräff
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-37208-z

Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome
Cited by: 116
Author(s): Joy Bergelson, Jana Mittelstrass, Matthew Horton
Software Mentions: 2
Published: almost 6 years ago

10.1111/jvim.16058

Peri‐ictal magnetic resonance imaging characteristics in dogs with suspected idiopathic epilepsy
Cited by: 11
Author(s): Aran Nagendran, J. Fraser McConnell, Luisa De Risio, Roberto José‐López, R. Gutierrez Quintana, Kelsey Robinson, Simon Platt, Daniel Sánchez Masián, Thomas W. Maddox, Rita Gonçalves
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2021.644548

Delineating the Association Between Soluble CD26 and Autoantibodies Against G-Protein Coupled Receptors, Immunological and Cardiovascular Parameters Identifies Distinct Patterns in Post-Infectious vs. Non-Infection-Triggered Myalgic Encephalomyelitis/Chronic Fatigue Syndrome
Cited by: 12
Author(s): Marvin Szklarski, Helma Freitag, Siegfried Lorenz, S Becker, Franziska Sotzny, Sandra Bauer, Jelka Hartwig, Harald Heidecke, Kirsten Wittke, Claudia Kedor, Leif G. Hanitsch, Patricia Grabowski, Nuno Sepúlveda, Carmen Scheibenbogen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-38329-1

Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory
Cited by: 18
Author(s): Swapnil Kumar, Kumari Snehkant Lata, Priyanka Sharma, Shivarudrappa B. Bhairappanavar, Subhash Soni, Jayashankar Das
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-018-37976-8

Unique skull network complexity of Tyrannosaurus rex among land vertebrates
Cited by: 19
Author(s): Ingmar Werneburg, Borja Esteve‐Altava, Joana Bruno, Marta Torres Ladeira, Rui Diogo
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-38658-9

Validation and quality assessment of macromolecular structures using complex network analysis
Cited by: 21
Author(s): Jure Pražnikar, Miloš Tomić, Dušan Turk
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep37329

Exploring Spatio-temporal Dynamics of Cellular Automata for Pattern Recognition in Networks
Cited by: 10
Author(s): Gisele Helena Barboni Miranda, Jeaneth Machicao, Odemir Martinez Bruno
Software Mentions: 2
Published: about 8 years ago

10.1038/sdata.2016.46

A protocol to convert spatial polyline data to network formats and applications to world urban road networks
Cited by: 88
Author(s): Alireza Karduni, Amirhassan Kermanshah, Sybil Derrible
Software Mentions: 2
Published: over 8 years ago

10.12688/f1000research.12404.1

Exploring Vietnamese co-authorship patterns in social sciences with basic network measures of 2008-2017 Scopus data
Cited by: 19
Author(s): Tung Manh Ho, Ha Viet Nguyen, Thu‐Trang Vuong, Quang-Minh Dam, Hiep‐Hung Pham, Quan‐Hoang Vuong
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-43596-7

The impact of rare but severe vaccine adverse events on behaviour-disease dynamics: a network model
Cited by: 28
Author(s): S.K. Bhattacharyya, Amit Vutha, Chris T. Bauch
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2015.00307

Biological networks: the microscope of the twenty-first century?
Cited by: 0
Author(s): Frank Emmert‐Streib, Matthias Dehmer
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-019-44314-z

First use of anatomical networks to study modularity and integration of heads, forelimbs and hindlimbs in abnormal anencephalic and cyclopic vs normal human development
Cited by: 14
Author(s): Rui Diogo, Janine M. Ziermann, Christopher M. Smith, Malak Alghamdi, Jose S. M. Fuentes, André J. Duerinckx
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.7235

Roost sites of chimney swift ( <i>Chaetura pelagica</i> ) form large‐scale spatial networks
Cited by: 5
Author(s): Courtney E. le Roux, Joseph J. Nocera
Software Mentions: 2
Published: over 3 years ago

10.1038/srep29228

Integrative analysis of cancer genes in a functional interactome
Cited by: 6
Author(s): Matthew Ung, Chun-Chi Liu, Chao Cheng
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms22031097

In Silico Inference of Synthetic Cytotoxic Interactions from Paclitaxel Responses
Cited by: 0
Author(s): Jeong Hoon Lee, Kye Hwa Lee, Ju Han Kim
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2019.00064

Mouse Skull Mean Shape and Shape Robustness Rely on Different Genetic Architectures and Different Loci
Cited by: 11
Author(s): Ceferino Varón‐González, Luisa F. Pallares, Vincent Debat, Nicolas Navarro
Software Mentions: 2
Published: almost 6 years ago

10.18632/oncotarget.21783

Identification of potential prognostic ceRNA module biomarkers in patients with pancreatic adenocarcinoma
Cited by: 14
Author(s): Lili Zhao, Bing-Rong Liu
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms22073497

ceRNA Network Regulation of TGF-β, WNT, FOXO, Hedgehog Pathways in the Pharynx of Ciona robusta
Cited by: 4
Author(s): Aiti Vizzini, Angela Bonura, Laura La Paglia, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Vincenzo Arizza
Software Mentions: 2
Published: over 3 years ago

10.1186/s12967-019-1947-7

Cytokine expression in Treponema pallidum infection
Cited by: 6
Author(s): Noah Kojima, Janet Siebert, Holden T. Maecker, Yael Rosenberg-Hasson, Segundo R. León, Silver K. Vargas, Kelika A. Konda, Carlos F. Caceres, Jeffrey D. Klausner
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2021.641174

Trypanosome KKIP1 Dynamically Links the Inner Kinetochore to a Kinetoplastid Outer Kinetochore Complex
Cited by: 10
Author(s): Lorenzo Brusini, Simon D’Archivio, Jennifer McDonald, Bill Wickstead
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.00234

Sperm Microbiota and Its Impact on Semen Parameters
Cited by: 110
Author(s): David Baud, Céline Pattaroni, Nicolas Vulliemoz, Vincent Castella, Benjamin J. Marsland, Miloš Stojanov
Software Mentions: 2
Published: almost 6 years ago

10.18632/oncotarget.10734

Distinct distributions of genomic features of the 5’ and 3’ partners of coding somatic cancer gene fusions: arising mechanisms and functional implications
Cited by: 0
Author(s): Yang Zhao, Won‐Min Song, Fan Zhang, Ming‐Ming Zhou, Weijia Zhang, Martin J. Walsh, Bin Zhang
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0121002

Fast Approximate Quadratic Programming for Graph Matching
Cited by: 115
Author(s): Joshua T. Vogelstein, John M. Conroy, Vince Lyzinski, Louis J. Podrazik, Steven G. Kratzer, Eric T. Harley, Donniell E. Fishkind, R. Jacob Vogelstein, Carey E. Priebe
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0195161

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis
Cited by: 39
Author(s): Dás P, Boyang Ji, Petia Kovatcheva‐Datchary, Fredrik Bäckhed, Jens Nielsen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0213741

Movements of scalloped hammerhead sharks (Sphyrna lewini) at Cocos Island, Costa Rica and between oceanic islands in the Eastern Tropical Pacific
Cited by: 37
Author(s): Elena Nalesso, Alex Hearn, Óscar Sosa-Nishizaki, Todd Steiner, Alex Antoniou, Andrew Reid, Sandra Bessudo, Germán Soler, A. Peter Klimley, Frida Lara, James T. Ketchum, Rándall Arauz
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0161474

BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts
Cited by: 4
Author(s): Étienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, François‐Joseph Lapointe
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0237471

Diffusing science through social networks: The case of breastfeeding communication on Twitter
Cited by: 9
Author(s): Sara Moukarzel, Martin Rehm, Miguel del Fresno, Alan J. Daly
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0007441

Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli – A Systems Approach
Cited by: 34
Author(s): Jędrzej Szymański, Szymon Józefczuk, Zoran Nikoloski, Joachim Selbig, Victoria J. Nikiforova, Gareth Catchpole, Lothar Willmitzer
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0200079

Urothelial bladder cancer may suppress perforin expression in CD8+ T cells by an ICAM-1/TGFβ2 mediated pathway
Cited by: 14
Author(s): Ciputra Adijaya Hartana, Emma Ahlén Bergman, Ali Zirakzadeh, David H. Krantz, Malin E. Winerdal, Max Winerdal, Markus Johansson, Farhood Alamdari, Tomasz Jakubczyk, Hans Glise, Katrine Riklund, Amir Sherif, Ola Winqvist
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0158161

How to Study the City on Instagram
Cited by: 54
Author(s): John D. Boy, Justus Uitermark
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0140085

Seasonal Influenza Vaccination amongst Medical Students: A Social Network Analysis Based on a Cross-Sectional Study
Cited by: 19
Author(s): Rhiannon Edge, Joseph J. Heath, Barry Rowlingson, Thomas Keegan, Rachel Isba
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0160919

Anomaly Detection in Host Signaling Pathways for the Early Prognosis of Acute Infection
Cited by: 12
Author(s): Kun Wang, Stanley Langevin, Corey S. O’Hern, Mark D. Shattuck, Serenity Ogle, Adriana Forero, Juliet Morrison, Richard A. Slayden, Michael G. Katze, Michael Kirby
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-019-6302-0

A novel algorithm for alignment of multiple PPI networks based on simulated annealing
Cited by: 2
Author(s): Jialu Hu, Junhao He, Jing Li, Yiqun Gao, Yanyan Zheng, Xuequn Shang
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0016932

Novel Feature for Catalytic Protein Residues Reflecting Interactions with Other Residues
Cited by: 11
Author(s): Yizhou Li, Gongbing Li, Zhining Wen, Hui Yin, Manman Hu, Jiamin Xiao, Menglong Li
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0172867

Network analysis of wildfire transmission and implications for risk governance
Cited by: 71
Author(s): Alan A. Ager, Cody Evers, Michelle A. Day, Haiganoush K. Preisler, Ana M. G. Barros, Max Nielsen-Pincus
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-13-438

Exploration of the core metabolism of symbiotic bacteria
Cited by: 12
Author(s): Cecília C. Klein, Ludovic Cottret, Janice Kielbassa, Hubert Charles, Christian Gautier, Ana Tereza Ribeiro de Vasconcelos, Vincent Lacroix, Marie‐France Sagot
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-021-90171-0

Network-based analysis of key regulatory genes implicated in Type 2 Diabetes Mellitus and Recurrent Miscarriages in Turner Syndrome
Cited by: 3
Author(s): Anam Farooqui, Alaa Alhazmi, Shafiul Haque, Naaila Tamkeen, Mahboubeh Mehmankhah, Safia Tazyeen, Sher Ali, Romana Ishrat
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0213221

A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes
Cited by: 1
Author(s): Richard Newton, Lorenz Wernisch
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0198166

Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries
Cited by: 83
Author(s): Mary F. Feitosa, Aldi T. Kraja, Daniel I. Chasman, Yun Ju Sung, Thomas W. Winkler, Ιωάννα Ντάλλα, Xiuqing Guo, Nora Franceschini, Ching‐Yu Cheng, Xueling Sim, Dina Vojinović, Jonathan Marten, Solomon K. Musani, Changwei Li, Amy R. Bentley, M. R. W. Brown, Karen Schwander, Melissa A. Richard, Raymond Noordam, Hugues Aschard, Traci M. Bartz, Lawrence F. Bielak, Rajkumar Dorajoo, Virginia Fisher, Fernando Pires Hartwig, Andrea R V R Horimoto, Kurt Lohman, Alisa K. Manning, Tuomo Rankinen, Albert V. Smith, Salman M. Tajuddin, Mary K. Wojczynski, Maris Alver, Mathilde Boissel, Qiuyin Cai, Archie Campbell, Jin Chai, Xu Chen, Jasmin Divers, Chuan Gao, Anuj Goel, Yanick Hagemeijer, Sarah E. Harris, Meian He, Fang Chi Hsu, Anne Jackson, Mika Kähönen, Anuradhani Kasturiratne, Pirjo Komulainen, Brigitte Kühnel, Federica Laguzzi, Jian’an Luan, Nana Matoba, Ilja M. Nolte, Sandosh Padmanabhan, Muhammad Riaz, Rico Rueedi, Antonietta Robino, M. Abdullah Said, Robert A. Scott, Tamar Sofer, Alena Stančáková, Fumihiko Takeuchi, Bamidele O. Tayo, Peter J. van der Most, Tibor V. Varga, Véronique Vitart, Yajuan Wang, Erin B. Ware, Helen R. Warren, Stefan Weiß, Wanqing Wen, Lisa R. Yanek, Weihua Zhang, Jing Hua Zhao, Saima Afaq, Najaf Amin, Marzyeh Amini, Dan E. Arking, Tin Aung, Eric Boerwinkle, Ingrid B. Borecki, Ulrich Broeckel, Morris J. Brown, Marco Brumat, Gregory L. Burke, Mickaël Canouil, Aravinda Chakravarti, Charumathi Sabanayagam, Yii Der Ida Chen, John Connell, Adolfo Correa, Lisa de las Fuentes, Renée de Mutsert, H. Janaka De Silva, Xuan Deng, Jingzhong Ding, Qing Duan, Charles B. Eaton, Georg Ehret, Ruben N. Eppinga, Εvangelos Εvangelou, Jessica D. Faul, Stephan B. Felix, Nita G. Forouhi, Terrence Forrester, Oscar H. Franco, Yechiel Friedlander, Ilaria Gandin, He Gao, Mohsen Ghanbari, Bruna Gigante, C. Charles Gu, Dongfeng Gu, Saskia Hagenaars, Göran Hallmans, Tamara B. Harris, Jiang He, Sami Heikkinen, Chew Kiat Heng, Makoto Hirata, Barbara V. Howard, M. Arfan Ikram, Ulrich John, Tomohiro Katsuya, Chiea Chuen Khor, Tuomas O. Kilpeläinen, Woon Puay Koh, José Eduardo Krieger, Stephen B. Kritchevsky, Michiaki Kubo, Johanna Kuusisto, Timo A. Lakka, Carl D. Langefeld, Claudia Langenberg, Lenore J. Launer, Benjamin Lehne, Cora E. Lewis, Yize Li, Shiow J. Lin, Jianjun Li, Jingmin Liu, Marie Loh, Tin Louie, Reedik Mägi, Colin A. McKenzie, Thomas Meitinger, Andres Metspalu, Yuri Milaneschi, Lili Milani, Karen L. Mohlke, Yukihide Momozawa, Mike A. Nalls, Christopher P. Nelson, Nona Sotoodehnia, Jill M. Norris, Jeff O’Connell, Thomas T. Perls, Nancy L. Pedersen, Annette Peters, Patricia A. Peyser, Neil Poulter, Leslie J. Raffel, Olli T. Raitakari, Kathryn Roll, Lynda M. Rose, Frits R. Rosendaal, Jerome I. Rotter, Carsten Oliver Schmidt, Pamela J. Schreiner, Nicole Schupf, William R. Scott, Peter Sever, Yuan Shi, Stephen Sidney, Mario Sims, Colleen M. Sitlani, Jennifer A. Smith, Harold Snieder, John M. Starr, Konstantin Strauch, Heather M. Stringham, Nicholas Tan, Hua Tang, Kent D. Taylor, Yik Ying Teo, Yih Chung Tham, Stephen T. Turner, André G. Uitterlinden, Péter Vollenweider, Mélanie Waldenberger, Lihua Wang, Ya Xing Wang, Wen Bin Wei, Christine A. Williams, Jie Yao, Caizheng Yu, Jian Min Yuan, Wei Zhao, Alan B. Zonderman, Diane M. Becker, Michael Boehnke, Donald W. Bowden, John C. Chambers, Ian J. Deary, Tõnu Esko, Martin Farrall, Paul W. Franks, Barry I. Freedman, Philippe Froguel, Paolo Gasparini, Christian Gieger, Jost B. Jonas, Yoichiro Kamatani, Norihiro Kato, Jaspal S. Kooner, Zoltán Kutalik, Markku Laakso, Cathy C. Laurie, Karin Leander, Terho Lehtimäki, Patrik K. E. Magnusson, Albertine J. Oldehinkel, Brenda W. J. H. Penninx, Ozren Polašek, David J. Porteous, Rainer Rauramaa, Nilesh J. Samani, James G. Scott, Xiao Ou Shu, Pim van der Harst, Lynne E. Wagenknecht, Nicholas J. Wareham, Hugh Watkins, David R. Weir, Ananda R. Wickremasinghe, Tangchun Wu, Wei Zheng, Claude Bouchard, Kaare Christensen, Michele K. Evans, Vilmundur Gudnason, Bernardo Lessa Horta, Sharon L.R. Kardia, Yongmei Liu, Alexandre C. Pereira, Bruce M. Psaty, Paul M. Ridker, Rob M. van Dam, W. James Gauderman, Xiaofeng Zhu, Dennis O. Mook‐Kanamori, Myriam Fornage, Charles N. Rotimi, L. Adrienne Cupples, Tanika N. Kelly, Ervin R. Fox, Caroline Hayward, Cornelia M. van Duijn, E. Shyong Tai, Tien Yin Wong, Charles Kooperberg, Walter Palmas, Kenneth Rice, Alanna C. Morrison, Paul Elliott, Mark J. Caulfield, Patricia B. Munroe, D. C. Rao, Michael A. Province, Daniel Levy
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0216784

Sexual network and detection of anogenital human papillomavirus in a community cohort of men who have sex with men in Taiwan
Cited by: 4
Author(s): Carol Strong, Yi Fang Yu, Huachun Zou, Wen Wei Ku, Chia Wen Lee, Nai Ying Ko
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0112821

Community Structure Detection for Overlapping Modules through Mathematical Programming in Protein Interaction Networks
Cited by: 17
Author(s): Laura Bennett, Aristotelis Kittas, Songsong Liu, Lazaros G. Papageorgiou, Sophia Tsoka
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0205295

Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle
Cited by: 31
Author(s): Pablo Augusto de Souza Fonseca, Samir Id‐Lahoucine, Antônio Reverter, Juan F. Medrano, M. R. S. Fortes, J. Casellas, F. Miglior, Luiz F. Brito, Maria Raquel Santos Carvalho, F.S. Schenkel, Loan Nguyen, Laércio R. Porto-Neto, M. G. Thomas, Ángela Cánovas
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0138148

Analysing Local Sparseness in the Macaque Brain Network
Cited by: 0
Author(s): R. V. Singh, Seema Nagar, Amit A. Nanavati
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0068927

Spatial Structures of the Environment and of Dispersal Impact Species Distribution in Competitive Metacommunities
Cited by: 21
Author(s): Dexiecuo Ai, Dominique Gravel, Chengjin Chu, Gang Wang
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0190001

Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma
Cited by: 5
Author(s): Yuan Pan, Christina Durón, Erin C. Bush, Yu Ma, Peter A. Sims, David H. Gutmann, Ami Radunskaya, Johanna Hardin
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0020298

Time-Ordered Networks Reveal Limitations to Information Flow in Ant Colonies
Cited by: 100
Author(s): Benjamin Blonder, Anna Dornhaus
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0176751

Using null models to infer microbial co-occurrence networks
Cited by: 64
Author(s): Nora Connor, Albert Barberán, Aaron Clauset
Software Mentions: 2
Published: over 7 years ago