cran: igraph | Projects | Ecosyste.ms: Papers

10.1038/s42003-020-0823-6

Effect direction meta-analysis of GWAS identifies extreme, prevalent and shared pleiotropy in a large mammal
Cited by: 21
Author(s): Ruidong Xiang, I. van den Berg, Iona M. MacLeod, Hans D. Daetwyler, Michael E. Goddard
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2018.00999

Bacterial Communities in Riparian Sediments: A Large-Scale Longitudinal Distribution Pattern and Response to Dam Construction
Cited by: 35
Author(s): Juan Chen, Peifang Wang, Chao Wang, Xun Wang, Lingzhan Miao, Sheng Liu, Qiusheng Yuan
Software Mentions: 3
Published: over 8 years ago

10.3389/fgene.2020.500064

A Machine Learning Approach to Predicting Autism Risk Genes: Validation of Known Genes and Discovery of New Candidates
Cited by: 22
Author(s): Ying Lin, Shiva Afshar, Anjali M. Rajadhyaksha, James B. Potash, Shizhong Han
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2019.00122

A Multi-Kingdom Study Reveals the Plasticity of the Rumen Microbiota in Response to a Shift From Non-grazing to Grazing Diets in Sheep
Cited by: 44
Author(s): Alejandro Belanche, Alison H. Kingston‐Smith, Gareth Griffith, C. J. Newbold
Software Mentions: 3
Published: over 7 years ago

10.1186/s13071-019-3583-8

Anaplasma phagocytophilum evolves in geographical and biotic niches of vertebrates and ticks
Cited by: 73
Author(s): Ryanne I. Jaarsma, Hein Sprong, Katsuhisa Takumi, Mária Kazimírová, Cornelia Silaghi, Atle Mysterud, Ivo Rudolf, Relja Beck, Gábor Földvári, Laura Tomassone, Margit Groenevelt, Reinard R. Everts, Jolianne M. Rijks, Frauke Ecke, Birger Hörnfeldt, David Modrý, Karolina Majerová, Jan Votýpka, Agustı́n Estrada-Peña
Software Mentions: 3
Published: over 7 years ago

10.1038/s42003-019-0333-6

Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters
Cited by: 20
Author(s): Francesco Del Carratore, Konrad Zych, Matthew Cummings, Eriko Takano, Marnix H. Medema, Rainer Breitling
Software Mentions: 3
Published: over 7 years ago

10.1186/s12879-017-2895-6

Interaction of healthcare worker hands and portable medical equipment: a sequence analysis to show potential transmission opportunities
Cited by: 45
Author(s): Chetan Jinadatha, Frank J. Villamaria, John David Coppin, Charles Dale, Marjory Williams, Ryan Whitworth, Mark Stibich
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12879-021-06475-z

Association between tuberculosis in men and social network structure in Kampala, Uganda
Cited by: 5
Author(s): Paige B. Miller, Sarah Zalwango, Ronald Galiwango, Robert Kakaire, Juliet N. Sekandi, Lauren Steinbaum, John M. Drake, Christopher C. Whalen, Noah Kiwanuka
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0219771

Descriptive analysis of horse movement networks during the 2015 equestrian season in Ontario, Canada
Cited by: 7
Author(s): Kelsey L. Spence, Terri L. O’Sullivan, Zvonimir Poljak, Amy L. Greer
Software Mentions: 3
Published: over 7 years ago

10.1186/s13071-016-1803-z

Nested coevolutionary networks shape the ecological relationships of ticks, hosts, and the Lyme disease bacteria of the Borrelia burgdorferi (s.l.) complex
Cited by: 34
Author(s): Agustı́n Estrada-Peña, Hein Sprong, Alejandro Cabezas-Cruz, José de la Fuente, Ana Ramo, Elena Claudia Coipan
Software Mentions: 3
Published: about 10 years ago

10.1038/tp.2017.37

Modeling anorexia nervosa: transcriptional insights from human iPSC-derived neurons
Cited by: 21
Author(s): Priscilla D. Negraes, Fernanda R. Cugola, Roberto H. Herai, Cleber A. Trujillo, Alexandre S. Cristino, Thanathom Chailangkarn, Alysson R. Muotri, Vikas Duvvuri
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-021-85281-8

Characterization of the microbial communities in wheat tissues and rhizosphere soil caused by dwarf bunt of wheat
Cited by: 13
Author(s): Tongshuo Xu, Wenli Jiang, Dandan Qin, Taiguo Liu, Zhang Jian-min, Wanquan Chen, Li Gao
Software Mentions: 3
Published: over 5 years ago

10.1155/2019/9736968

The Potential Link between Gut Microbiota and Serum TRAb in Chinese Patients with Severe and Active Graves’ Orbitopathy
Cited by: 13
Author(s): Tingting Shi, Lin Hua, Hua Wang, Xin Zhong
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0246687

Comparison of wild rice (Oryza longistaminata) tissues identifies rhizome-specific bacterial and archaeal endophytic microbiomes communities and network structures
Cited by: 7
Author(s): Xiaojue Peng, Jian Xie, Wenzhuo Li, Haizhu Xie, Yaohui Cai, Xia Ding
Software Mentions: 3
Published: over 5 years ago

10.1016/j.dib.2020.105684

Dataset on dynamics of Coronavirus on Twitter
Cited by: 23
Author(s): Norman Aguilar-Gallegos, Leticia Elizabeth Romero-García, Enrique Genaro Martínez-González, Edgar Iván García-Sánchez, Jorge Aguilar-Ávila
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0189223

Systematic integrative analysis of gene expression identifies HNF4A as the central gene in pathogenesis of non-alcoholic steatohepatitis
Cited by: 47
Author(s): Cristina Baciu, Elisa Pasini, Marc Angeli, Katherine J. P. Schwenger, Jenifar Afrin, Atul Humar, Sandra E. Fischer, Keyur Patel, Johane P. Allard, Mamatha Bhat
Software Mentions: 3
Published: almost 9 years ago

10.1093/database/bau101

A Web-based database of genetic association studies in cutaneous melanoma enhanced with network-driven data exploration tools
Cited by: 7
Author(s): Emmanouil Athanasiadis, Kyriaki Antonopoulou, Foteini Chatzinasiou, Christina M. Lill, Marilena M. Bourdakou, Αλέξανδρος Σακελλαρίου, Katerina P. Kypreou, Irene Stefanaki, Εvangelos Εvangelou, John P. A. Ioannidis, Lars Bertram, Alexander J. Stratigos, George M. Spyrou
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0176500

Simulation of the dynamics of primary immunodeficiencies in CD4+ T-cells
Cited by: 4
Author(s): Gabriel Teku, Mauno Vihinen
Software Mentions: 3
Published: over 9 years ago

10.3389/fnmol.2019.00030

An Appraisal of the Influence of the Metabotropic Glutamate 5 (mGlu5) Receptor on Sociability and Anxiety
Cited by: 16
Author(s): Arnau Ramos-Prats, Julia Kölldorfer, Elena Paolo, Maximilian Zeidler, Gabriele Schmid, Francesco Ferraguti
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2016.00645

A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata
Cited by: 26
Author(s): Jawad Merhej, Antonin Thiébaut, Corinne Blugeon, Juliette Pouch, Mohammed el amine Ali Chaouche, Jean‐Michel Camadro, Stéphane Le Crom, Gaëlle Lelandais, Frédéric Devaux
Software Mentions: 3
Published: over 10 years ago

10.1186/s12865-019-0297-9

Comprehensive analyses of long non-coding RNA expression profiles by RNA sequencing and exploration of their potency as biomarkers in psoriatic arthritis patients
Cited by: 12
Author(s): Tao Yue, Mei Ji, Huanru Qu, Mengru Guo, Fengmin Bai, Zhanming Zhang, Weifeng Wang, Xuming Gong, Zhenghua Zhang
Software Mentions: 3
Published: about 7 years ago

10.1186/1471-2164-16-S11-S4

A method for developing regulatory gene set networks to characterize complex biological systems
Cited by: 1
Author(s): Chayaporn Suphavilai, Zhu Li, Jake Y. Chen
Software Mentions: 3
Published: almost 11 years ago

10.3390/v12060679

Host–Pathogen Responses to Pandemic Influenza H1N1pdm09 in a Human Respiratory Airway Model
Cited by: 15
Author(s): Elizabeth A. Pharo, Sinéad M. Williams, Victoria Boyd, Vinod Sundaramoorthy, Peter A. Durr, Michelle L. Baker
Software Mentions: 3
Published: over 6 years ago

10.3390/v11080691

Effects of the Q80K Polymorphism on the Physicochemical Properties of Hepatitis C Virus Subtype 1a NS3 Protease
Cited by: 1
Author(s): Allan Peres-da-Silva, Deborah Antunes, Audálio Rebelo Torres, Ernesto R. Caffarena, Elisabeth Lampe
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0257052

Network assessment and modeling the management of an epidemic on a college campus with testing, contact tracing, and masking
Cited by: 2
Author(s): Gregg Hartvigsen
Software Mentions: 3
Published: about 5 years ago

10.1007/s00251-017-1051-1

Signatures of historical selection on MHC reveal different selection patterns in the moor frog (Rana arvalis)
Cited by: 15
Author(s): Maria Cortázar‐Chinarro, Yvonne Meyer‐Lucht, Anssi Laurila, Jacob Höglund
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12913-021-06798-2

Empirically identified networks of healthcare providers for adults with mental illness
Cited by: 2
Author(s): Joshua Breslau, Beth Dana, Harold Alan Pincus, Marcela Horvitz-Lennon, Luke J. Matthews
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.7274

Temporal patterns in the social network of core units in Rwenzori Angolan colobus monkeys: Effects of food availability and interunit dispersal
Cited by: 2
Author(s): Frances V. Adams, T. Jean M. Arseneau‐Robar, Tyler R. Bonnell, Samantha M. Stead, Julie A. Teichroeb
Software Mentions: 3
Published: over 5 years ago

10.1186/s12939-019-0911-8

Can social network analysis help to include marginalised young women in structural support programmes in Botswana? A mixed methods study
Cited by: 3
Author(s): David Loutfi, Neil Andersson, Susan Law, Jon Salsberg, Jeannie Haggerty, Leagajang Kgakole, Anne Cockcroft
Software Mentions: 3
Published: almost 8 years ago

10.3389/fgene.2019.00932

Identification and Classification of Differentially Expressed Genes and Network Meta-Analysis Reveals Potential Molecular Signatures Associated With Tuberculosis
Cited by: 25
Author(s): Aftab Alam, Nikhat Imam, Mohd Murshad Ahmed, Safiya Tazyeen, Naaial Tamkeen, Anam Farooqui, Md. Zubbair Malik, Romana Ishrat
Software Mentions: 3
Published: almost 7 years ago

10.1002/ece3.2983

Geographic characteristics of sable (Martes zibellina ) distribution over time in Northeast China
Cited by: 7
Author(s): Rui Zhang, Li Yang, Li Ai, Yang Qin-ke, Minhao Chen, Jingxi Li, Lei Yang, Xiaofeng Luan
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-021-86124-2

Fine scale infectious disease modeling using satellite-derived data
Cited by: 2
Author(s): Nistara Randhawa, Hugo Mailhot, Duncan Temple Lang, Beatriz Martínez‐López, Kirsten Gilardi, Jonna A. K. Mazet
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.1632

Modeling directional spatio-temporal processes in island biogeography
Cited by: 11
Author(s): José C. Carvalho, Pedro Cardoso, François Rigal, Kostas A. Triantis, Paulo A. V. Borges
Software Mentions: 3
Published: about 11 years ago

10.3389/fnins.2017.00066

A Statistical Method to Distinguish Functional Brain Networks
Cited by: 14
Author(s): André Fujita, Maciel Calebe Vidal, Daniel Yasumasa Takahashi
Software Mentions: 3
Published: over 9 years ago

10.3389/fnins.2021.642324

Network Analysis of the CSF Proteome Characterizes Convergent Pathways of Cellular Dysfunction in ALS
Cited by: 4
Author(s): Alexander G. Thompson, Gray Eg, P. David Charles, Michele T.M. Hu, Kevin Talbot, Roman Fischer, Benedikt M. Kessler, Martin R Turner
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-019-2915-1

Difficulty in inferring microbial community structure based on co-occurrence network approaches
Cited by: 103
Author(s): Hokuto Hirano, Kazuhiro Takemoto
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0248194

Effects of precipitation change and nitrogen addition on the composition, diversity, and molecular ecological network of soil bacterial communities in a desert steppe
Cited by: 24
Author(s): Meiqing Jia, Zhiwei Gao, Huijun Gu, Chenyu Zhao, Meiqi Liu, Fanhui Liu, Lina Xie, Lichun Wang, Guogang Zhang, Yuhua Liu, Guodong Han
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0156576

BoCluSt: Bootstrap Clustering Stability Algorithm for Community Detection
Cited by: 4
Author(s): Carlos Garcı́a
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-021-86409-6

Variations in Schedule III prescription patterns in a Medicaid population pre- and post-policy
Cited by: 0
Author(s): Radhakrishnan Nagarajan, Jeffery Talbert, Craig S. Miller, Jeffrey L. Ebersole
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.2749

Ecological consequences of colony structure in dynamic ant nest networks
Cited by: 11
Author(s): Stephen Ellis, Daniel W. Franks, Elva J. H. Robinson
Software Mentions: 3
Published: almost 10 years ago

10.3389/fnins.2018.00041

Understanding the Generation of Network Bursts by Adaptive Oscillatory Neurons
Cited by: 22
Author(s): Tanguy Fardet, Mathieu Ballandras, Samuel Bottani, Stéphane Métens, Pascal Monceau
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.7499

Testing for functional significance of traits: Effect of the light environment in tropical tree saplings
Cited by: 6
Author(s): Guilherme Silva Modolo, Victor Alexandre Hardt Ferreira dos Santos, Marciel José Ferreira
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2015.00522

Microbial responses to changes in flow status in temporary headwater streams: a cross-system comparison
Cited by: 39
Author(s): Catherine M. Febria, Jacob D. Hosen, Byron C. Crump, Margaret A. Palmer, D. Dudley Williams
Software Mentions: 3
Published: over 11 years ago

10.1002/ece3.5024

Availability of food resources and habitat structure shape the individual‐resource network of a Neotropical marsupial
Cited by: 15
Author(s): Nícholas F. de Camargo, Hernani Oliveira, Juliana Fernandes Ribeiro, A. J. A. de Camargo, Emerson M. Vieira
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0119580

Tightly Regulated Expression of Autographa californica Multicapsid Nucleopolyhedrovirus Immediate Early Genes Emerges from Their Interactions and Possible Collective Behaviors
Cited by: 2
Author(s): Chikako Ono, Mitsuru Sato, Hitomi Taka, Sumitada Asano, Yoshiharu Matsuura, Hideaki Bando
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0129745

'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens
Cited by: 23
Author(s): Colin J. Worby, Timothy D. Read
Software Mentions: 3
Published: over 11 years ago

10.1002/ece3.5473

Vocal networks remain stable after a disturbance in Emei music frogs
Cited by: 3
Author(s): Ke Deng, Jianguo Cui
Software Mentions: 3
Published: over 7 years ago

10.1172/jci.insight.140028

Identification of antigen-specific TCR sequences based on biological and statistical enrichment in unselected individuals
Cited by: 9
Author(s): Neal Smith, Bert Ruiter, Yamini Virkud, Ang A. Tu, Brinda Monian, James Moon, J. Christopher Love, Wayne Shreffler
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.5269

Spatial differences in genetic diversity and northward migration suggest genetic erosion along the boreal caribou southern range limit and continued range retraction
Cited by: 14
Author(s): Laura M. Thompson, Cornelya F. C. Klütsch, Micheline Manseau, Paul J. Wilson
Software Mentions: 3
Published: over 7 years ago

10.1200/CCI.17.00079

Overcoming the Straw Man Effect in Oncology: Visualization and Ranking of Chemotherapy Regimens Using an Information Theoretic Approach
Cited by: 1
Author(s): Jeremy L. Warner, Peter Yang, Gil Alterovitz
Software Mentions: 3
Published: about 9 years ago

10.1002/ece3.7128

Chimpanzee identification and social network construction through an online citizen science platform
Cited by: 5
Author(s): Maureen S. McCarthy, Colleen R. Stephens, Paula Dieguez, Liran Samuni, Marie‐Lyne Després‐Einspenner, Briana Harder, Anja Landsmann, Laura Lynn, Nuria Maldonado, Zuzana Ročkaiová, Jane Widness, Roman M. Wittig, Christophe Boesch, Hjalmar S. Kühl, Mimi Arandjelovic
Software Mentions: 3
Published: almost 6 years ago

10.1186/1742-6405-8-26

HIV-1 mutational pathways under multidrug therapy
Cited by: 13
Author(s): Glenn Lawyer, André Altmann, Alexander Thielen, Maurizio Zazzi, Anders Sönnerborg, Thomas Lengauer
Software Mentions: 3
Published: almost 16 years ago

10.3389/fonc.2021.656675

Inferring Cell Subtypes and LncRNA Function by a Cell-Specific CeRNA Network in Breast Cancer
Cited by: 2
Author(s): Xin Chen, Jing Xu, Feng Zeng, Chao Yang, Weijun Sun, Yu Tao, Haokun Zhang, Li Yan
Software Mentions: 3
Published: over 5 years ago

10.1080/22221751.2019.1595985

Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing Escherichia coli strains
Cited by: 34
Author(s): David A. Montero, Felipe Del Canto, Juliana Velasco, Rocío Colello, Nora Lía Padola, Juan Carlos Salazar, Carla San Martin, Ángel Oñate, Jorge Blanco, David A. Rasko, Carmen Contreras, José L. Puente, Flemming Scheutz, Eelco Franz, Roberto Vidal
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-019-5603-7

Genomic comparison of serogroups O159 and O170 with other Vibrio cholerae serogroups
Cited by: 8
Author(s): Zhenpeng Li, Xin Lü, Duochun Wang, Wei Li Liang, Jingyun Zhang, Jie Li, Jialiang Xu, Bo Pang, Biao Kan
Software Mentions: 3
Published: over 7 years ago

10.1128/JB.00245-17

Polyvalent Proteins, a Pervasive Theme in the Intergenomic Biological Conflicts of Bacteriophages and Conjugative Elements
Cited by: 28
Author(s): Lakshminarayan M. Iyer, A. Maxwell Burroughs, Swadha Anand, Robson Francisco de Souza, L. Aravind
Software Mentions: 3
Published: over 9 years ago

10.1186/s40478-018-0524-2

Integrated proteomics and network analysis identifies protein hubs and network alterations in Alzheimer’s disease
Cited by: 111
Author(s): Qi Zhang, Cheng Ma, Marla Gearing, Peng George Wang, Lih‐Shen Chin, Lian Li
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0173548

Characterization of the mechanism of drug-drug interactions from PubMed using MeSH terms
Cited by: 28
Author(s): Ling Yin, Bryan Figler, Hong Huang, Yi-Cheng Tu, Wang Ju, Feng Cheng
Software Mentions: 3
Published: over 9 years ago

10.1007/s00572-017-0788-6

Root-associated fungal communities in three Pyroleae species and their mycobiont sharing with surrounding trees in subalpine coniferous forests on Mount Fuji, Japan
Cited by: 4
Author(s): Shuzheng Jia, Takashi Nakano, Masahira Hattori, Kazuhide Nara
Software Mentions: 3
Published: over 9 years ago

10.3390/e22091029

Investigating the Influence of Inverse Preferential Attachment on Network Development
Cited by: 9
Author(s): Cynthia S. Q. Siew, Michael S. Vitevitch
Software Mentions: 3
Published: about 6 years ago

10.1111/1462-2920.14800

The global distribution and evolutionary history of the pT26‐2 archaeal plasmid family
Cited by: 4
Author(s): Catherine Badel, Gaël Erauso, Annika L. Gomez, Ryan Catchpole, Mathieu Gonnet, Jacques Oberto, Patrick Forterre, Violette Da Cunha
Software Mentions: 3
Published: about 7 years ago

10.1186/1471-2164-16-S10-S7

Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data
Cited by: 7
Author(s): Panagiotis Papasaikas, Arvind Rao, Peter Huggins, Juan Valcárcel, A. Javier Lopez
Software Mentions: 3
Published: about 11 years ago

10.15252/msb.20177532

Quantitative analysis of protein interaction network dynamics in yeast
Cited by: 38
Author(s): Albi Celaj, Ulrich Schlecht, Justin D. Smith, Weihong Xu, Sundari Suresh, Molly Miranda, Ana Aparicio, Michael Proctor, Ronald W. Davis, Frederick P. Roth, Robert P. St.Onge
Software Mentions: 3
Published: over 9 years ago

10.1021/acs.jctc.0c01308

Reconstruction of ARNT PAS-B Unfolding Pathways by Steered Molecular Dynamics and Artificial Neural Networks
Cited by: 12
Author(s): Stefano Motta, Alessandro Pandini, Arianna Fornili, Laura Bonati
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.01261

Can We Use Functional Genetics to Predict the Fate of Nitrogen in Estuaries?
Cited by: 20
Author(s): Eric J. Raes, Kristen Karsh, Adam J. Kessler, Perran L. M. Cook, Bronwyn H. Holmes, Jodie van de Kamp, Levente Bodrossy, Andrew Bissett
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2164-15-1144

Co-acting gene networks predict TRAIL responsiveness of tumour cells with high accuracy
Cited by: 1
Author(s): Paul G. O’Reilly, Csaba Ortutay, Gráinne Gernon, Enda O’Connell, Cathal Seoighe, Susan Boyce, Luís Serrano, Éva Szegezdi
Software Mentions: 3
Published: almost 12 years ago

10.1017/S0950268820002654

Drawing transmission graphs for COVID-19 in the perspective of network science
Cited by: 4
Author(s): Necmi Gürsakal, Bülent Batmaz, Gamze Aktuna
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2021.704052

Phylogeny of the Varidnaviria Morphogenesis Module: Congruence and Incongruence With the Tree of Life and Viral Taxonomy
Cited by: 13
Author(s): Anthony C. Woo, Morgan Gaïa, Julien Guglielmini, Violette Da Cunha, Patrick Forterre
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0052068

Power-Laws and the Use of Pluripotent Stem Cell Lines
Cited by: 4
Author(s): Bernhard Schuldt, Anke Guhr, Michael Lenz, Sabine Kobold, Ben D. MacArthur, Andreas Schuppert, Peter Löser, Franz‐Josef Müller
Software Mentions: 3
Published: almost 14 years ago

10.3389/fmicb.2014.00219

Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Cited by: 968
Author(s): David Berry, Stefanie Widder
Software Mentions: 3
Published: over 12 years ago

10.1038/s41380-018-0200-8

Lipidome alterations in human prefrontal cortex during development, aging, and cognitive disorders
Cited by: 60
Author(s): Qianhui Yu, Zhisong He, Dmitry Zubkov, Shouxiong Huang, Ilia Kurochkin, Xiaode Yang, Tobias B. Halene, Lothar Willmitzer, Patrick Giavalisco, Schahram Akbarian, Philipp Khaitovich
Software Mentions: 3
Published: about 8 years ago

10.1186/s40001-021-00586-8

NR4A3 and CCL20 clusters dominate the genetic networks in CD146+ blood cells during acute myocardial infarction in humans
Cited by: 3
Author(s): Yanhui Wang, Chen-Xin Li, Jessica M. Stephenson, Sean P. Marrelli, Yanming Kou, Dong Meng, Ting Wu
Software Mentions: 3
Published: about 5 years ago

10.1155/2020/2948292

Commonality and Specificity of Acupuncture Point Selections
Cited by: 15
Author(s): Ye-Seul Lee, Yeonhee Ryu, Da-Eun Yoon, Cheol-Han Kim, Geesoo Hong, Ye-Chae Hwang, Younbyoung Chae
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.62365

A large accessory protein interactome is rewired across environments
Cited by: 23
Author(s): Zhimin Liu, Darach Miller, Fangfei Li, Xianan Liu, Sasha F. Levy
Software Mentions: 3
Published: about 6 years ago

10.2196/jmir.6045

Characterizing Twitter Discussions About HPV Vaccines Using Topic Modeling and Community Detection
Cited by: 145
Author(s): Didi Surian, Dat Quoc Nguyen, Georgina Kennedy, Mark Johnson, Enrico Coiera, Adam G. Dunn
Software Mentions: 3
Published: about 10 years ago

10.7554/eLife.13125

Sequential phenotypic constraints on social information use in wild baboons
Cited by: 35
Author(s): Alecia J. Carter, Miquel Torrents-Ticó, Guy Cowlishaw
Software Mentions: 3
Published: over 10 years ago

10.1016/j.jid.2019.08.444

IL-36 Promotes Systemic IFN-I Responses in Severe Forms of Psoriasis
Cited by: 58
Author(s): Marika Catapano, Marta Vergnano, Marco Romano, Satveer K. Mahil, Siew Eng Choon, A. D. Burden, Helen Young, Ian Carr, HJ Lachmann, Giovanna Lombardi, Catherine Smith, Francesca D. Ciccarelli, Jonathan Barker, Francesca Capon
Software Mentions: 3
Published: over 6 years ago

10.1155/2021/8533464

Identification of a Nomogram from Ferroptosis-Related Long Noncoding RNAs Signature to Analyze Overall Survival in Patients with Bladder Cancer
Cited by: 22
Author(s): Yuanshan Cui, Yumeng Chai, Xuanyan Che, Yong Zhang
Software Mentions: 3
Published: about 5 years ago

10.1002/jia2.25327

Oral abstracts of the 10th IAS Conference on HIV Science, 21‐24 July 2019, Mexico City, Mexico
Cited by: 12
Author(s):
Software Mentions: 3
Published: over 7 years ago

10.3390/ijerph17031009

Geographical Patterns of Algal Communities Associated with Different Urban Lakes in China
Cited by: 15
Author(s): Shengnan Chen, Hao He, Rongrong Zong, Kaiwen Liu, Miaomiao Yan, Lei Xu, Yutian Miao
Software Mentions: 3
Published: over 6 years ago

10.18632/oncotarget.8308

Dynamic epigenetic changes to VHL occur with sunitinib in metastatic clear cell renal cancer
Cited by: 14
Author(s): Grant D. Stewart, Thomas Powles, Christophe Van Neste, Alison Meynert, Fiach C. O’Mahony, A. Douglas Laird, Dieter Deforce, Filip Van Nieuwerburgh, Geert Trooskens, Wim Van Criekinge, Tim De Meyer, David J. Harrison
Software Mentions: 3
Published: over 10 years ago

10.18632/oncotarget.10947

Integrated analysis miRNA and mRNA profiling in patients with severe oligozoospermia reveals miR-34c-3p downregulates PLCXD3 expression
Cited by: 22
Author(s): Zhiming Li, Zaozao Zheng, Jun Ruan, Zhi Li, Xuan Zhuang, Chi-Meng Tzeng
Software Mentions: 3
Published: over 10 years ago

10.18632/oncotarget.14918

A meta-analysis of HLA peptidome composition in different hematological entities: entity-specific dividing lines and “pan-leukemia” antigens
Cited by: 11
Author(s): Linus Backert, Daniel J. Kowalewski, Juliane S. Walz, Heiko Schuster, Claudia Berlin, Marian C. Neidert, Mirle Schemionek, Tim H. Brümmendorf, Vladan Vučinić, Dietger Niederwieser, Lothar Kanz, Helmut R. Salih, Oliver Kohlbacher, Katja Weisel, Hans‐Georg Rammensee, Stefan Stevanović, Juliane S. Walz
Software Mentions: 3
Published: almost 10 years ago

10.18632/oncotarget.24795

Molecular signatures associated with tumor-specific immune response in melanoma patients treated with dendritic cell-based immunotherapy
Cited by: 11
Author(s): Tamara García-Salum, Andrea Villablanca, Franziska Matthäus, Andrés Tittarelli, Mauricio Baeza, Carlos Pereda, María Alejandra Gleisner, Fermín E. González, Mercedes López, Jörg D. Hoheisel, Johannes Norgauer, Peter J. Gebicke‐Haerter, Flavio Salazar‐Onfray
Software Mentions: 3
Published: over 8 years ago

10.18632/oncotarget.25216

Parenclitic networks for predicting ovarian cancer
Cited by: 25
Author(s): Harry J. Whitwell, Oleg Blyuss, Usha Menon, John F. Timms, Alexey Zaikin
Software Mentions: 3
Published: over 8 years ago

10.3390/ijms22020953

Steroidal Regulation of Oviductal microRNAs Is Associated with microRNA-Processing in Beef Cows
Cited by: 9
Author(s): Ángela María Gonella-Diaza, E. A. Lopes, Kauê Ribeiro da Silva, Ricardo Perecin Nociti, Gabriella Mamede Andrade, Jorge Eduardo Atuesta-Bustos, Juliano Coelho da Silveira, Flávio Vieira Meirelles, Mário Binelli
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms22105056

Cross-Predicting Essential Genes between Two Model Eukaryotic Species Using Machine Learning
Cited by: 6
Author(s): Túlio de Lima Campos, Pasi K. Korhonen, Neil D. Young
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21093171

DRUGPATH: The Drug Gene Pathway Meta-Database
Cited by: 3
Author(s): Rajeev Jaundoo, Travis J. A. Craddock
Software Mentions: 3
Published: over 6 years ago

10.1038/s41388-018-0651-z

The coordinated action of VCP/p97 and GCN2 regulates cancer cell metabolism and proteostasis during nutrient limitation
Cited by: 32
Author(s): Katarzyna Parzych, Paula Saavedra‐García, Gabriel N. Valbuena, Hibah A Al-Sadah, Mark E. Robinson, Lucy Penfold, Desislava M Kuzeva, Angie Ruiz-Tellez, Sandra Loaiza, Viktoria Holzmann, Valentina S Caputo, David C. Johnson, Martin Kaiser, Anastasios Karadimitris, Eric Lam, Éric Chevet, Niklas Feldhahn, Hector C. Keun, Holger W. Auner
Software Mentions: 2
Published: almost 8 years ago

10.1007/s00442-021-04967-y

The role of habitat configuration in shaping animal population processes: a framework to generate quantitative predictions
Cited by: 8
Author(s): Peng He, Pierre‐Olivier Montiglio, Marius Somveille, Maurício Cantor, Dan Farine
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.7293

Mutanome and expression of immune response genes in microsatellite stable colon cancer
Cited by: 6
Author(s): Rebeca Sanz‐Pamplona, Raúl Gil-Hoyos, Adriana López-Dóriga, M. Henar Alonso, Susanna Aussó, David G. Mollevı́, Cristina Santos, Xavier Sanjuán, Ramón Salazar, Ramón Alemany, Vı́ctor Moreno
Software Mentions: 2
Published: over 10 years ago

10.3390/ijerph18083922

Time Granularity Impact on Propagation of Disruptions in a System-of-Systems Simulation of Infrastructure and Business Networks
Cited by: 3
Author(s): Mateusz Iwo Dubaniowski, Hans Rudolf Heinimann
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph17124182

Statistical and Network-Based Analysis of Italian COVID-19 Data: Communities Detection and Temporal Evolution
Cited by: 12
Author(s): Marianna Milano, Mario Cannataro
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.13627

Identification of laryngeal cancer prognostic biomarkers using an inflammatory gene-related, competitive endogenous RNA network
Cited by: 19
Author(s): Qun He, Linli Tian, Hao Jiang, Jiarui Zhang, Qiang Li, Yanan Sun, Jianwen Zhao, Huijun Li, Ming Liu
Software Mentions: 2
Published: almost 10 years ago

10.3390/ijms22031097

In Silico Inference of Synthetic Cytotoxic Interactions from Paclitaxel Responses
Cited by: 0
Author(s): Jeong Hoon Lee, Kye Hwa Lee, Ju Han Kim
Software Mentions: 2
Published: almost 6 years ago

10.2196/12914

Identifying Influence Agents That Promote Physical Activity Through the Simulation of Social Network Interventions: Agent-Based Modeling Study
Cited by: 24
Author(s): Thabo J. van Woudenberg, Bojan Simoski, Eric Fernandes de Mello Araújo, Kirsten E. Bevelander, William J. Burk, Crystal R. Smit, Laura Buijs, Michel Klein, Moniek Buijzen
Software Mentions: 2
Published: about 7 years ago

10.2196/18457

Two Decades of Research Using Taiwan’s National Health Insurance Claims Data: Bibliometric and Text Mining Analysis on PubMed
Cited by: 23
Author(s): Sheng Feng Sung, Cheng‐Yang Hsieh, Yu Hu
Software Mentions: 2
Published: over 6 years ago

10.2196/jmir.7643

Identifying Opinion Leaders to Promote Organ Donation on Social Media: Network Study
Cited by: 34
Author(s): Jingyuan Shi, Charles T. Salmon
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijerph17051764

Relationship of Salivary Microbiome with the Worsening of the Periodontal Health Status in Young Adults: A 3-Year Cohort Study
Cited by: 1
Author(s): Monirul Islam, Daisuke Ekuni, Naoki Toyama, Terumasa Kobayashi, Kohei Fujimori, Yuzo Uchida, Daiki Fukuhara, Ayano Taniguchi-Tabata, Koichi Kataoka, Yoshiaki Iwasaki, Manabu Morita
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.10734

Distinct distributions of genomic features of the 5’ and 3’ partners of coding somatic cancer gene fusions: arising mechanisms and functional implications
Cited by: 0
Author(s): Yang Zhao, Won‐Min Song, Fan Zhang, Ming‐Ming Zhou, Weijia Zhang, Martin J. Walsh, Bin Zhang
Software Mentions: 2
Published: over 10 years ago

Projects: cran: igraph

Science Score: 100/100

Bonuses:

Papers Mentioning igraph 1,555