cran: igraph | Projects | Ecosyste.ms: Papers

10.1186/s42523-021-00088-2

Effect of milk replacer allowance on calf faecal bacterial community profiles and fermentation
Cited by: 11
Author(s): Shiv Kumar, M. A. Khan, Emma Beijer, Jinxin Liu, Katherine K. Lowe, Wayne Young, David A. Mills, Christina D. Moon
Software Mentions: 3
Published: over 3 years ago

10.1186/s12862-017-1101-1

Musculoskeletal networks reveal topological disparity in mammalian neck evolution
Cited by: 25
Author(s): Patrick Arnold, Borja Esteve‐Altava, Martin S. Fischer
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0219771

Descriptive analysis of horse movement networks during the 2015 equestrian season in Ontario, Canada
Cited by: 7
Author(s): Kelsey L. Spence, Terri L. O’Sullivan, Zvonimir Poljak, Amy L. Greer
Software Mentions: 3
Published: over 5 years ago

10.2196/jmir.6045

Characterizing Twitter Discussions About HPV Vaccines Using Topic Modeling and Community Detection
Cited by: 145
Author(s): Didi Surian, Dat Quoc Nguyen, Georgina Kennedy, Mark Johnson, Enrico Coiera, Adam G. Dunn
Software Mentions: 3
Published: about 8 years ago

10.1098/rstb.2019.0009

Using social network analysis of mixed-species groups in African savannah herbivores to assess how community structure responds to environmental change
Cited by: 18
Author(s): Kristine Meise, Daniel W. Franks, Jakob Bro‐Jørgensen
Software Mentions: 3
Published: over 5 years ago

10.1002/brb3.834

Graph theory analysis of cortical thickness networks in adolescents with d-transposition of the great arteries
Cited by: 24
Author(s): Christopher G. Watson, Christian Stopp, Jane W. Newburger, Michael J. Rivkin
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00251-017-1051-1

Signatures of historical selection on MHC reveal different selection patterns in the moor frog (Rana arvalis)
Cited by: 15
Author(s): Maria Cortázar‐Chinarro, Yvonne Meyer‐Lucht, Anssi Laurila, Jacob Höglund
Software Mentions: 3
Published: almost 7 years ago

10.1186/1471-2105-13-75

Quantitatively integrating molecular structure and bioactivity profile evidence into drug-target relationship analysis
Cited by: 5
Author(s): Tianlei Xu, Ruixin Zhu, Qi Liu, Zhiwei Cao
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0193425

Consistent individual differences and population plasticity in network-derived sociality: An experimental manipulation of density in a gregarious ungulate
Cited by: 9
Author(s): Paul Philip O'Brien, Quinn M. R. Webber, Eric Vander Wal
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2105-16-S13-S9

Understanding and predicting binding between human leukocyte antigens (HLAs) and peptides by network analysis
Cited by: 18
Author(s): Heng Luo, Yue Hao, Hui Wen Ng, Leming Shi, Weida Tong, William B. Mattes, Donna L. Mendrick, Huasheng Hong
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0257052

Network assessment and modeling the management of an epidemic on a college campus with testing, contact tracing, and masking
Cited by: 2
Author(s): Gregg Hartvigsen
Software Mentions: 3
Published: about 3 years ago

10.7717/peerj-cs.600

Clustering assessment in weighted networks
Cited by: 2
Author(s): Argimiro Arratia, Martí Renedo Mirambell
Software Mentions: 3
Published: over 3 years ago

10.1007/s13593-021-00668-1

Social-ecological analysis of timely rice planting in Eastern India
Cited by: 7
Author(s): Anton Urfels, Andrew J. McDonald, Gerardo van Halsema, P.C. Struik, Pankaj Kumar, R. K. Malik, Shishpal Poonia, Balwinder-Singh, Deepak Singh, Mukesh Kumar Singh, Timothy J. Krupnik
Software Mentions: 3
Published: almost 4 years ago

10.7717/peerj-cs.699

ABCDE: Approximating Betweenness-Centrality ranking with progressive-DropEdge
Cited by: 2
Author(s): Martin Mirakyan
Software Mentions: 3
Published: about 3 years ago

10.18632/oncotarget.24795

Molecular signatures associated with tumor-specific immune response in melanoma patients treated with dendritic cell-based immunotherapy
Cited by: 11
Author(s): Tamara García-Salum, Andrea Villablanca, Franziska Matthäus, Andrés Tittarelli, Mauricio Baeza, Carlos Pereda, María Alejandra Gleisner, Fermín E. González, Mercedes López, Jörg D. Hoheisel, Johannes Norgauer, Peter J. Gebicke‐Haerter, Flavio Salazar‐Onfray
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.8855

Prediction of antiviral drugs against African swine fever viruses based on protein–protein interaction analysis
Cited by: 9
Author(s): Zhaozhong Zhu, Yunshi Fan, Yang Liu, Taijiao Jiang, Yang Cao, Yousong Peng
Software Mentions: 3
Published: over 4 years ago

10.1186/s12859-019-2900-8

Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis
Cited by: 10
Author(s): Denise Thiel, Nataša Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0078059

Perturbation Centrality and Turbine: A Novel Centrality Measure Obtained Using a Versatile Network Dynamics Tool
Cited by: 25
Author(s): Kristóf Z. Szalay, Péter Csermely
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0242621

Victims, offenders and victim-offender overlaps of knife crime: A social network analysis approach using police records
Cited by: 11
Author(s): Louis Bailey, Vincent Harinam, Barak Ariel
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13068-015-0348-2

Phylogeny-structured carbohydrate metabolism across microbiomes collected from different units in wastewater treatment process
Cited by: 16
Author(s): Yu Xia, Francis Y. L. Chin, Yuanqing Chao, Tong Zhang
Software Mentions: 3
Published: about 9 years ago

10.1172/jci.insight.140028

Identification of antigen-specific TCR sequences based on biological and statistical enrichment in unselected individuals
Cited by: 9
Author(s): Neal Smith, Bert Ruiter, Yamini Virkud, Ang A. Tu, Brinda Monian, James Moon, J. Christopher Love, Wayne Shreffler
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0106052

Dimensionality of Social Networks Using Motifs and Eigenvalues
Cited by: 30
Author(s): Anthony Bonato, David F. Gleich, Myung‐Hwan Kim, Dieter Mitsche, Paweł Prałat, Yanhua Tian, Stephen J. Young
Software Mentions: 3
Published: about 10 years ago

10.1200/CCI.17.00079

Overcoming the Straw Man Effect in Oncology: Visualization and Ranking of Chemotherapy Regimens Using an Information Theoretic Approach
Cited by: 1
Author(s): Jeremy L. Warner, Peter Yang, Gil Alterovitz
Software Mentions: 3
Published: about 7 years ago

10.1093/biosci/biaa067

Global Cropland Connectivity: A Risk Factor for Invasion and Saturation by Emerging Pathogens and Pests
Cited by: 24
Author(s): Yao‐Wu Xing, John Fredy Hernández Nopsa, Kelsey F. Andersen, Jorge Andrade-Piedra, Fenton Beed, Guy Blomme, Mónica Carvajal-Yepes, Danny Coyne, Wilmer J. Cuellar, Gregory A. Forbes, Jan Kreuze, J. Kroschel, P. Lava Kumar, J.P. Legg, Monica Parker, Elmar Schulte-Geldermann, Kalpana Sharma, Karen A. Garrett
Software Mentions: 3
Published: over 4 years ago

10.3390/ijerph17031009

Geographical Patterns of Algal Communities Associated with Different Urban Lakes in China
Cited by: 15
Author(s): Shengnan Chen, Hao He, Rongrong Zong, Kaiwen Liu, Miaomiao Yan, Lei Xu, Yutian Miao
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0244839

A scientometric overview of CORD-19
Cited by: 45
Author(s): Giovanni Colavizza, Rodrigo Costas, Vincent Traag, Nees Jan van Eck, Thed N. van Leeuwen, Ludo Waltman
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0204186

EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma
Cited by: 6
Author(s): Borong Shao, Maria Moksnes Bjaanæs, Åslaug Helland, Christof Schütte, Tim Conrad
Software Mentions: 3
Published: almost 6 years ago

10.1128/JB.00245-17

Polyvalent Proteins, a Pervasive Theme in the Intergenomic Biological Conflicts of Bacteriophages and Conjugative Elements
Cited by: 28
Author(s): Lakshminarayan M. Iyer, A. Maxwell Burroughs, Swadha Anand, Robson Francisco de Souza, L. Aravind
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0107925

Anomalies in Network Bridges Involved in Bile Acid Metabolism Predict Outcomes of Colorectal Cancer Patients
Cited by: 3
Author(s): Sunjae Lee, Ki Young Lee, Seyeol Yoon, Jae Woo Lee, Doheon Lee
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0123545

Characterizing Task-Based OpenMP Programs
Cited by: 7
Author(s): Ananya Muddukrishna, Peter Jönsson, Mats Brorsson
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms21093171

DRUGPATH: The Drug Gene Pathway Meta-Database
Cited by: 3
Author(s): Rajeev Jaundoo, Travis J. A. Craddock
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0150812

Highly Predictive Model for a Protective Immune Response to the A(H1N1)pdm2009 Influenza Strain after Seasonal Vaccination
Cited by: 11
Author(s): Karsten Jürchott, Axel Schulz, Cecilia Bozzetti, Dominika Pohlmann, Ulrik Stervbo, Sarah Warth, Julia Nora Mälzer, Julian Marcel Waldner, Brunhilde Schweiger, Sven Olek, Andreas Grützkau, Nina Babel, Andreas Thiel, Avidan U. Neumann
Software Mentions: 3
Published: over 8 years ago

10.1111/eva.12138

Inferring influenza global transmission networks without complete phylogenetic information
Cited by: 4
Author(s): Stéphane Aris‐Brosou
Software Mentions: 3
Published: almost 11 years ago

10.1038/s41598-019-53569-5

Qualitative microbiome profiling along a wastewater system in Kampala, Uganda
Cited by: 4
Author(s): Pierre H. H. Schneeberger, Samuel Fuhrimann, Sören L. Becker, Joël F. Pothier, Brion Duffy, Christian Beuret, Jürg E. Frey, Jürg Utzinger
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2017.00043

Pancreatic Islet Protein Complexes and Their Dysregulation in Type 2 Diabetes
Cited by: 18
Author(s): Helle Pedersen, Valborg Guðmundsdóttir, Søren Brunak
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-54720-y

Statistical characteristics of amino acid covariance as possible descriptors of viral genomic complexity
Cited by: 7
Author(s): C. K. Sruthi, Meher K. Prakash
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2019.00916

An Integrated System Biology Approach Yields Drug Repositioning Candidates for the Treatment of Heart Failure
Cited by: 3
Author(s): Guodong Yang, Aiqun Ma, Zhaohui S. Qin
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-57142-y

Targeting redox metabolism: the perfect storm induced by acrylamide poisoning in the brain
Cited by: 13
Author(s): Demetrio Raldúa, Marta Casado, Eva Prats, Melissa Faria, Francesc Puig‐Castellví, Yolanda Pérez, Ignacio Alfonso, Chuan-Yu Hsu, Mark A. Arick, Natàlia García-Reyero, Tamar Ziv, Shani Ben-Lulu, Arie Admon, Benjamı́n Piña
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-019-57191-3

Decision-making process during collective movement initiation in golden snub-nosed monkeys (Rhinopithecus roxellana)
Cited by: 8
Author(s): YangQuan Chen, Ruliang Pan, Wang Xiao-wei, Xiao-Guang Qi, Zhao Hong-yan, Songtao Guo, Yi Ren, Weiwei Fu, Zirui Zhu, Baoguo Li
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-60737-5

L-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks
Cited by: 18
Author(s): Marianna Milano, Tijana Milenković, Mario Cannataro, Pietro Hiram Guzzi
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.5024

Availability of food resources and habitat structure shape the individual‐resource network of a Neotropical marsupial
Cited by: 15
Author(s): Nícholas F. de Camargo, Hernani Oliveira, Juliana Fernandes Ribeiro, A. J. A. de Camargo, Emerson M. Vieira
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.701331

Modularity in Biological Networks
Cited by: 17
Author(s): Sergio Antonio Alcalá-Corona, Santiago Sandoval-Motta, Jesús Espinal-Enríquez, Enrique Hernández‐Lemus
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-020-67718-8

No evidence for a relationship between social closeness and similarity in resting-state functional brain connectivity in schoolchildren
Cited by: 3
Author(s): Carolyn Beth McNabb, Laura Grace Burgess, Amy Fancourt, Nancy Mulligan, Lily FitzGibbon, Patricia M. Riddell, Kou Murayama
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2019.00932

Identification and Classification of Differentially Expressed Genes and Network Meta-Analysis Reveals Potential Molecular Signatures Associated With Tuberculosis
Cited by: 25
Author(s): Aftab Alam, Nikhat Imam, Mohd Murshad Ahmed, Safiya Tazyeen, Naaial Tamkeen, Anam Farooqui, Md. Zubbair Malik, Romana Ishrat
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.7499

Testing for functional significance of traits: Effect of the light environment in tropical tree saplings
Cited by: 6
Author(s): Guilherme Silva Modolo, Victor Alexandre Hardt Ferreira dos Santos, Marciel José Ferreira
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2020.500064

A Machine Learning Approach to Predicting Autism Risk Genes: Validation of Known Genes and Discovery of New Candidates
Cited by: 22
Author(s): Ying Lin, Shiva Afshar, Anjali M. Rajadhyaksha, James B. Potash, Shizhong Han
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-72477-7

Play fighting social networks do not predict injuries from later aggression
Cited by: 12
Author(s): Simon P. Turner, Jennifer E. Weller, Irene Camerlink, Gareth Arnott, Taegyu Choi, Andrea Doeschl‐Wilson, Marianne Farish, Simone Foister
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-73591-2

The spatial and temporal dynamics of global meat trade networks
Cited by: 15
Author(s): Min Gon Chung, Kelly Kapsar, Kenneth A. Frank, Jianguo Liu
Software Mentions: 3
Published: about 4 years ago

10.3389/fgene.2020.604585

Inference of Intercellular Communications and Multilayer Gene-Regulations of Epithelial–Mesenchymal Transition From Single-Cell Transcriptomic Data
Cited by: 15
Author(s): Yutong Sha, Shuxiong Wang, Federico Bocci, Peijie Zhou, Qing Nie
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-85281-8

Characterization of the microbial communities in wheat tissues and rhizosphere soil caused by dwarf bunt of wheat
Cited by: 13
Author(s): Tongshuo Xu, Wenli Jiang, Dandan Qin, Taiguo Liu, Zhang Jian-min, Wanquan Chen, Li Gao
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.2749

Ecological consequences of colony structure in dynamic ant nest networks
Cited by: 11
Author(s): Stephen Ellis, Daniel W. Franks, Elva J. H. Robinson
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-021-86124-2

Fine scale infectious disease modeling using satellite-derived data
Cited by: 2
Author(s): Nistara Randhawa, Hugo Mailhot, Duncan Temple Lang, Beatriz Martínez‐López, Kirsten Gilardi, Jonna A. K. Mazet
Software Mentions: 3
Published: over 3 years ago

10.3389/fcimb.2018.00079

Ecological Restoration of Antibiotic-Disturbed Gastrointestinal Microbiota in Foregut and Hindgut of Cows
Cited by: 25
Author(s): Shoukun Ji, Tao Jiang, Hui Yan, Changhong Guo, Jingjing Liu, Huawei Su, Gibson Maswayi Alugongo, Haitao Shi, Yajing Wang, Zhijun Cao, Shengli Li
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-86409-6

Variations in Schedule III prescription patterns in a Medicaid population pre- and post-policy
Cited by: 0
Author(s): Radhakrishnan Nagarajan, Jeffery Talbert, Craig S. Miller, Jeffrey L. Ebersole
Software Mentions: 3
Published: over 3 years ago

10.3389/fcimb.2014.00062

To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
Cited by: 20
Author(s): Elise Vaumourin, GwenaÃ«l Vourc'h, Sandra Telfer, Xavier Lambin, Diaeldin A. Salih, Ulrike Seitzer, Serge Morand, Nathalie Charbonnel, Muriel Vayssier‐Taussat, Patrick Gasqui
Software Mentions: 3
Published: over 10 years ago

10.3389/fcimb.2019.00254

Probiotic Supplementation During Human Pregnancy Affects the Gut Microbiota and Immune Status
Cited by: 19
Author(s): Yuyi Chen, Zhe Li, Kian Deng Tye, Huijuan Luo, Xiaomei Tang, Yu-Chieh Liao, Dongju Wang, Juan Zhou, Ping Yang, Yimi Li, Yingbing Su, Xiaomin Xiao
Software Mentions: 3
Published: over 5 years ago

10.3389/fcell.2021.703489

Reconstruction of the Cytokine Signaling in Lysosomal Storage Diseases by Literature Mining and Network Analysis
Cited by: 3
Author(s): Silvia Parolo, Danilo Tomasoni, Pranami Bora, Alan Ramponi, Chanchala Kaddi, Karim Azer, Enrico Domenici, Susana Neves-Zaph, Rosario Lombardo
Software Mentions: 3
Published: over 3 years ago

10.16910/jemr.12.3.4

Improving the pilot selection process by using eye-tracking tools
Cited by: 1
Author(s): Slaviša Vlačić, Aleksandar Knežević, Sanja Rođenkov, Saptarshi Mandal, Panagiotis A. Vitsas
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-90498-8

Evolution of networks of protein domain organization
Cited by: 20
Author(s): M. Fayez Aziz, Gustavo Caetano‐Anollés
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-93122-x

Quantum inspired community detection for analysis of biodiversity change driven by land-use conversion and climate change
Cited by: 2
Author(s): Sana Akbar, Sri Khetwat Saritha
Software Mentions: 3
Published: over 3 years ago

10.3389/fbioe.2018.00121

Metabolite-Centric Reporter Pathway and Tripartite Network Analysis of Arabidopsis Under Cold Stress
Cited by: 15
Author(s): İbrahim Koç, İsa Öner Yüksel, Gustavo Caetano‐Anollés
Software Mentions: 3
Published: about 6 years ago

10.12688/f1000research.2-130.v3

An a posteriori measure of network modularity
Cited by: 5
Author(s): Timothée Poisot
Software Mentions: 3
Published: almost 11 years ago

10.1155/2019/9736968

The Potential Link between Gut Microbiota and Serum TRAb in Chinese Patients with Severe and Active Graves’ Orbitopathy
Cited by: 13
Author(s): Tingting Shi, Lin Hua, Hua Wang, Xin Zhong
Software Mentions: 3
Published: almost 5 years ago

10.1155/2020/2948292

Commonality and Specificity of Acupuncture Point Selections
Cited by: 15
Author(s): Ye-Seul Lee, Yeonhee Ryu, Da-Eun Yoon, Cheol-Han Kim, Geesoo Hong, Ye-Chae Hwang, Younbyoung Chae
Software Mentions: 3
Published: over 4 years ago

10.1186/1751-0473-7-12

RMol: a toolset for transforming SD/Molfile structure information into R objects
Cited by: 1
Author(s): Martin Grábner, Курт Вармуза, Matthias Dehmer
Software Mentions: 3
Published: about 12 years ago

10.1186/s40001-021-00586-8

NR4A3 and CCL20 clusters dominate the genetic networks in CD146+ blood cells during acute myocardial infarction in humans
Cited by: 3
Author(s): Yanhui Wang, Chen-Xin Li, Jessica M. Stephenson, Sean P. Marrelli, Yanming Kou, Dong Meng, Ting Wu
Software Mentions: 3
Published: about 3 years ago

10.1017/S0950268820002654

Drawing transmission graphs for COVID-19 in the perspective of network science
Cited by: 4
Author(s): Necmi Gürsakal, Bülent Batmaz, Gamze Aktuna
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12939-019-0911-8

Can social network analysis help to include marginalised young women in structural support programmes in Botswana? A mixed methods study
Cited by: 3
Author(s): David Loutfi, Neil Andersson, Susan Law, Jon Salsberg, Jeannie Haggerty, Leagajang Kgakole, Anne Cockcroft
Software Mentions: 3
Published: almost 6 years ago

10.1038/tp.2017.37

Modeling anorexia nervosa: transcriptional insights from human iPSC-derived neurons
Cited by: 21
Author(s): Priscilla D. Negraes, Fernanda R. Cugola, Roberto H. Herai, Cleber A. Trujillo, Alexandre S. Cristino, Thanathom Chailangkarn, Alysson R. Muotri, Vikas Duvvuri
Software Mentions: 3
Published: over 7 years ago

10.1111/1462-2920.14800

The global distribution and evolutionary history of the pT26‐2 archaeal plasmid family
Cited by: 4
Author(s): Catherine Badel, Gaël Erauso, Annika L. Gomez, Ryan Catchpole, Mathieu Gonnet, Jacques Oberto, Patrick Forterre, Violette Da Cunha
Software Mentions: 3
Published: about 5 years ago

10.1128/mBio.01793-16

Role of the ESCRT Complexes in Telomere Biology
Cited by: 9
Author(s): Anna K. Dieckmann, Vera Babin, Yaniv Harari, Roland Eils, Rainer König, Brian Luke, Martin Kupiec
Software Mentions: 3
Published: almost 8 years ago

10.1186/s10194-020-1077-x

Burden of migraine in Finland: multimorbidity and phenotypic disease networks in occupational healthcare
Cited by: 12
Author(s): Minna A. Korolainen, Samuli Tuominen, Samu Kurki, Mariann I. Lassenius, Iiro Toppila, Timo Purmonen, Jaana Santaholma, M Nissilä
Software Mentions: 3
Published: almost 5 years ago

10.1128/mBio.02002-18

Network-Guided Discovery of Influenza Virus Replication Host Factors
Cited by: 22
Author(s): Emily E. Ackerman, Eiryo Kawakami, Manami Katoh, Tokiko Watanabe, Shinji Watanabe, Yuriko Tomita, Tiago J. S. Lopes, Yoshikazu Matsuoka, Hiroaki Kitano, Jason E. Shoemaker, Yoshihiro Kawaoka
Software Mentions: 3
Published: almost 6 years ago

10.3390/e22091029

Investigating the Influence of Inverse Preferential Attachment on Network Development
Cited by: 9
Author(s): Cynthia S. Q. Siew, Michael S. Vitevitch
Software Mentions: 3
Published: about 4 years ago

10.1128/mBio.01470-21

Intra-Ramanome Correlation Analysis Unveils Metabolite Conversion Network from an Isogenic Population of Cells
Cited by: 8
Author(s): Yuehui He, Shi Huang, Peng Zhang, Yicai Ji, Jian Xu
Software Mentions: 3
Published: about 3 years ago

10.1080/22221751.2019.1595985

Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing <i>Escherichia coli</i> strains
Cited by: 34
Author(s): David A. Montero, Felipe Del Canto, Juliana Velasco, Rocío Colello, Nora Lía Padola, Juan Carlos Salazar, Carla San Martin, Ángel Oñate, Jorge Blanco, David A. Rasko, Carmen Contreras, José L. Puente, Flemming Scheutz, Eelco Franz, Roberto Vidal
Software Mentions: 3
Published: almost 6 years ago

10.1128/mSystems.00450-19

Oral Microbiome Alterations Associated with Early Childhood Caries Highlight the Importance of Carbohydrate Metabolic Activities
Cited by: 53
Author(s): Yuan Wang, Sa Wang, Chunyan Wu, Xi Chen, Zhuhui Duan, Qian Xu, Wen Jiang, Lei Xu, Tingting Wang, Lei Su, Ying Wang, Yadong Chen, Jie Zhang, Yun Huang, Suman Tong, Cheng Zhou, Shengjue Deng, Nan Qin
Software Mentions: 3
Published: almost 5 years ago

10.1002/ece3.7128

Chimpanzee identification and social network construction through an online citizen science platform
Cited by: 5
Author(s): Maureen S. McCarthy, Colleen R. Stephens, Paula Dieguez, Liran Samuni, Marie‐Lyne Després‐Einspenner, Briana Harder, Anja Landsmann, Laura Lynn, Nuria Maldonado, Zuzana Ročkaiová, Jane Widness, Roman M. Wittig, Christophe Boesch, Hjalmar S. Kühl, Mimi Arandjelovic
Software Mentions: 3
Published: almost 4 years ago

10.1002/ece3.5269

Spatial differences in genetic diversity and northward migration suggest genetic erosion along the boreal caribou southern range limit and continued range retraction
Cited by: 14
Author(s): Laura M. Thompson, Cornelya F. C. Klütsch, Micheline Manseau, Paul J. Wilson
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.5473

Vocal networks remain stable after a disturbance in Emei music frogs
Cited by: 3
Author(s): Ke Deng, Jianguo Cui
Software Mentions: 3
Published: over 5 years ago

10.1038/s41396-021-00913-1

Erosion reduces soil microbial diversity, network complexity and multifunctionality
Cited by: 201
Author(s): Liping Qiu, Qian Zhang, Hansong Zhu, Peter B. Reich, Samiran Banerjee, Marcel G. A. van der Heijden, Michael J. Sadowsky, Satoshi Ishii, Xiaoxu Jia, Mingan Shao, Baoyuan Liu, Huan Jiang, Haiqiang Li, Xiaorong Wei
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2018.00999

Bacterial Communities in Riparian Sediments: A Large-Scale Longitudinal Distribution Pattern and Response to Dam Construction
Cited by: 35
Author(s): Juan Chen, Peifang Wang, Chao Wang, Xun Wang, Lingzhan Miao, Sheng Liu, Qiusheng Yuan
Software Mentions: 3
Published: over 6 years ago

10.3389/fimmu.2017.01726

Shared IgG Infection Signatures vs. Hemorrhage-Restricted IgA Clusters in Human Dengue: A Phenotype of Differential Class-Switch via TGFβ1
Cited by: 4
Author(s): Chung‐Hao Huang, Ya-Hui Chang, Chun‐Yu Lin, Wen‐Hung Wang, Hui-Chung Kuan, Ya-Ju Hsieh, Yuwei Wang, Chung-Hsiang Yang, Jhen-Yan Chiu, Shih‐Feng Tsai, Yen-Hsu Chen, Hong-Hsing Liu
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2016.00645

A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata
Cited by: 26
Author(s): Jawad Merhej, Antonin Thiébaut, Corinne Blugeon, Juliette Pouch, Mohammed el amine Ali Chaouche, Jean‐Michel Camadro, Stéphane Le Crom, Gaëlle Lelandais, Frédéric Devaux
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2015.00522

Microbial responses to changes in flow status in temporary headwater streams: a cross-system comparison
Cited by: 39
Author(s): Catherine M. Febria, Jacob D. Hosen, Byron C. Crump, Margaret A. Palmer, D. Dudley Williams
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2020.01261

Can We Use Functional Genetics to Predict the Fate of Nitrogen in Estuaries?
Cited by: 20
Author(s): Eric J. Raes, Kristen Karsh, Adam J. Kessler, Perran L. M. Cook, Bronwyn H. Holmes, Jodie van de Kamp, Levente Bodrossy, Andrew Bissett
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2021.704052

Phylogeny of the Varidnaviria Morphogenesis Module: Congruence and Incongruence With the Tree of Life and Viral Taxonomy
Cited by: 13
Author(s): Anthony C. Woo, Morgan Gaïa, Julien Guglielmini, Violette Da Cunha, Patrick Forterre
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2014.00219

Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Cited by: 968
Author(s): David Berry, Stefanie Widder
Software Mentions: 3
Published: over 10 years ago

10.3390/e22121383

Research on Community Detection in Complex Networks Based on Internode Attraction
Cited by: 5
Author(s): Jinfang Sheng, Cheng Liu, Long Chen, Bin Wang, Junkai Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-87318-4

Fragmented sleep relates to hallucinations across perceptual modalities in the general population
Cited by: 5
Author(s): Sanne Brederoo, J N de Boer, Jacqueline de Vries, Mascha M J Linszen, Iris Sommer
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2020.01887

FcRn Overexpression Expands Diversity of the Humoral Immune Response in bFcRn Transgenic Mice
Cited by: 2
Author(s): Bence Szikora, Anita Marx, Péter K. Jani, Orsolya Pipek, Viktor Müller, István Csabai, Imre Kacskovıcs
Software Mentions: 2
Published: over 4 years ago

10.3390/ijerph16071223

Impacts of Road Traffic Network and Socioeconomic Factors on the Diffusion of 2009 Pandemic Influenza A (H1N1) in Mainland China
Cited by: 32
Author(s): Bo Xu, Huaiyu Tian, Clive E. Sabel, Bing Xu
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2021.641174

Trypanosome KKIP1 Dynamically Links the Inner Kinetochore to a Kinetoplastid Outer Kinetochore Complex
Cited by: 10
Author(s): Lorenzo Brusini, Simon D’Archivio, Jennifer McDonald, Bill Wickstead
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.7235

Roost sites of chimney swift ( <i>Chaetura pelagica</i> ) form large‐scale spatial networks
Cited by: 5
Author(s): Courtney E. le Roux, Joseph J. Nocera
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-62523-9

Estimating degree–degree correlation and network cores from the connectivity of high–degree nodes in complex networks
Cited by: 14
Author(s): Raúl J. Mondragón
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2020.00659

Comprehensive Network Analysis Reveals Alternative Splicing-Related lncRNAs in Hepatocellular Carcinoma
Cited by: 8
Author(s): Junqing Wang, Xiuquan Wang, Akshay Bhat, Yixin Chen, Keli Xu, Yin‐Yuan Mo, S. Stephen Yi, Yunyun Zhou
Software Mentions: 2
Published: over 4 years ago

10.1128/mSystems.00357-19

Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance
Cited by: 14
Author(s): Linwei Wu, Xiaoyu Shan, Si Chen, Qiuting Zhang, Qi Qi, Ziyan Qin, Huaqun Yin, Jizhong Zhou, Qiang He, Yunfeng Yang
Software Mentions: 2
Published: almost 5 years ago

10.1111/ele.12898

Contact networks structured by sex underpin sex‐specific epidemiology of infection
Cited by: 29
Author(s): Matthew J. Silk, Nicola Weber, Lucy C. Steward, David J. Hodgson, Mike Boots, Darren P. Croft, Richard J. Delahay, Robbie A. McDonald
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2015.00307

Biological networks: the microscope of the twenty-first century?
Cited by: 0
Author(s): Frank Emmert‐Streib, Matthias Dehmer
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-020-63222-1

Quantitative Analysis of Salivary Oral Bacteria Associated with Severe Early Childhood Caries and Construction of Caries Assessment Model
Cited by: 20
Author(s): Lijuan Zhang, Tongzheng Sun, Pengfei Zhu, Zheng Sun, Shanshan Li, Fan Li, Ying Zhang, Kaixuan Tan, Jie Lu, Rui Yuan, Zhenggang Chen, Dawei Guo, Qingyuan Guo, Fei Teng, Fang Yang
Software Mentions: 2
Published: over 4 years ago

Projects: cran: igraph

Papers Mentioning igraph 1,555