cran: igraph | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2021.704052

Phylogeny of the Varidnaviria Morphogenesis Module: Congruence and Incongruence With the Tree of Life and Viral Taxonomy
Cited by: 13
Author(s): Anthony C. Woo, Morgan Gaïa, Julien Guglielmini, Violette Da Cunha, Patrick Forterre
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2014.00219

Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Cited by: 968
Author(s): David Berry, Stefanie Widder
Software Mentions: 3
Published: over 12 years ago

10.1002/brb3.834

Graph theory analysis of cortical thickness networks in adolescents with d-transposition of the great arteries
Cited by: 24
Author(s): Christopher G. Watson, Christian Stopp, Jane W. Newburger, Michael J. Rivkin
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2105-13-75

Quantitatively integrating molecular structure and bioactivity profile evidence into drug-target relationship analysis
Cited by: 5
Author(s): Tianlei Xu, Ruixin Zhu, Qi Liu, Zhiwei Cao
Software Mentions: 3
Published: over 14 years ago

10.3389/fmicb.2016.00068

Using “Omics” and Integrated Multi-Omics Approaches to Guide Probiotic Selection to Mitigate Chytridiomycosis and Other Emerging Infectious Diseases
Cited by: 105
Author(s): Eria A. Rebollar, Rachael E. Antwis, Matthew H. Becker, Lisa K. Belden, Molly C. Bletz, Robert M. Brucker, Xavier A. Harrison, Myra C. Hughey, Jordan G. Kueneman, Andrew H. Loudon, Valerie J. McKenzie, Daniel Medina, Kevin P. C. Minbiole, Louise A. Rollins‐Smith, Jenifer B. Walke, Sophie Weiss, Douglas C. Woodhams, Reid N. Harris
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2018.03095

Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes
Cited by: 23
Author(s): Anukriti Sharma, Matthias Schmidt, Bärbel Kiesel, Nitish Kumar Mahato, Lauren Cralle, Yogendra Singh, Hans H. Richnow, Jack A. Gilbert, Wyatt Arnold, Rup Lal
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13068-015-0348-2

Phylogeny-structured carbohydrate metabolism across microbiomes collected from different units in wastewater treatment process
Cited by: 16
Author(s): Yu Xia, Francis Y. L. Chin, Yuanqing Chao, Tong Zhang
Software Mentions: 3
Published: about 11 years ago

10.1093/biosci/biaa067

Global Cropland Connectivity: A Risk Factor for Invasion and Saturation by Emerging Pathogens and Pests
Cited by: 24
Author(s): Yao‐Wu Xing, John Fredy Hernández Nopsa, Kelsey F. Andersen, Jorge Andrade-Piedra, Fenton Beed, Guy Blomme, Mónica Carvajal-Yepes, Danny Coyne, Wilmer J. Cuellar, Gregory A. Forbes, Jan Kreuze, J. Kroschel, P. Lava Kumar, J.P. Legg, Monica Parker, Elmar Schulte-Geldermann, Kalpana Sharma, Karen A. Garrett
Software Mentions: 3
Published: over 6 years ago

10.1128/mBio.01470-21

Intra-Ramanome Correlation Analysis Unveils Metabolite Conversion Network from an Isogenic Population of Cells
Cited by: 8
Author(s): Yuehui He, Shi Huang, Peng Zhang, Yicai Ji, Jian Xu
Software Mentions: 3
Published: about 5 years ago

10.3390/biom10121595

Identifying Genes Involved in Alkaloid Biosynthesis in Vinca minor through Transcriptomics and Gene Co-Expression Analysis
Cited by: 11
Author(s): Emily Amor Stander, Liuda Johana Sepúlveda, Thomas Dugé de Bernonville, Inês Carqueijeiro, Κωνσταντίνος Κουδούνας, Pamela Lemos Cruz, Sébastien Besseau, Arnaud Lanoue, Nicolas Papon, Nathalie Giglioli-Guivarc’h, Ron P. Dirks, Sarah E. O’Connor, Lucía Atehortúa, Audrey Oudin, Vincent Courdavault
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2021.654855

Transcriptome Dynamics Underlying Chlamydospore Formation in Trichoderma virens GV29-8
Cited by: 7
Author(s): Xinhong Peng, Beilei Wu, Shuaihu Zhang, Mei Li, Xiliang Jiang
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.01471

Warming, but Not Acidification, Restructures Epibacterial Communities of the Baltic Macroalga Fucus vesiculosus With Seasonal Variability
Cited by: 8
Author(s): Birte Mensch, Sven C. Neulinger, Sven Künzel, Martin Wahl, Ruth A. Schmitz
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.01142

Underlying Mechanism of Wild Radix pseudostellariae in Tolerance to Disease Under the Natural Forest Cover
Cited by: 10
Author(s): Hongmiao Wu, Jinshen Xia, Xianjin Qin, Huiming Wu, Shengkai Zhang, Yanlin Zhao, Christopher Rensing, Wenxiong Lin
Software Mentions: 3
Published: over 6 years ago

10.1155/2015/852341

Clique-Based Clustering of Correlated SNPs in a Gene Can Improve Performance of Gene-Based Multi-Bin Linear Combination Test
Cited by: 8
Author(s): Yung Joon Yoo, Sun Ah Kim, Shelley B. Bull
Software Mentions: 3
Published: almost 12 years ago

10.1155/2017/1016305

Identification of Pharmacologically Tractable Protein Complexes in Cancer Using the R-Based Network Clustering and Visualization Program MCODER
Cited by: 4
Author(s): Gino Kwon, Hyosil Kim
Software Mentions: 3
Published: almost 10 years ago

10.3389/fmicb.2021.665776

Assessing the Response of Ruminal Bacterial and Fungal Microbiota to Whole-Rumen Contents Exchange in Dairy Cows
Cited by: 9
Author(s): Madison S. Cox, Courtney L. Deblois, Garret Suen
Software Mentions: 3
Published: over 5 years ago

10.1242/bio.056176

A node-based informed modularity strategy to identify organizational modules in anatomical networks
Cited by: 4
Author(s): Borja Esteve‐Altava
Software Mentions: 3
Published: about 6 years ago

10.1186/1745-6150-6-31

Structural influence of gene networks on their inference: analysis of C3NET
Cited by: 54
Author(s): Gökmen Altay, Frank Emmert‐Streib
Software Mentions: 3
Published: almost 16 years ago

10.1155/2015/245075

Characterization of Protein Complexes and Subcomplexes in Protein-Protein Interaction Databases
Cited by: 1
Author(s): Nazar Zaki, Elfadil A. Mohamed, Antonio M. Mora
Software Mentions: 3
Published: almost 12 years ago

10.1042/BCJ20200511

Protein tyrosine phosphatases in cell adhesion
Cited by: 19
Author(s): Kung Chia Young, Laura Biggins, Hayley J. Sharpe
Software Mentions: 3
Published: over 5 years ago

10.1093/beheco/aru108

Resource redistribution in polydomous ant nest networks: local or global?
Cited by: 35
Author(s): Stephen Ellis, Daniel W. Franks, Elva J. H. Robinson
Software Mentions: 3
Published: almost 13 years ago

10.3389/fmicb.2020.01296

BALOs Improved Gut Microbiota Health in Postlarval Shrimp (Litopenaeus vannamei) After Being Subjected to Salinity Reduction Treatment
Cited by: 13
Author(s): Qingqing Cao, Farhana Najnine, Hongcao Han, Bing Wu, Jin Cai
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2019.00122

A Multi-Kingdom Study Reveals the Plasticity of the Rumen Microbiota in Response to a Shift From Non-grazing to Grazing Diets in Sheep
Cited by: 44
Author(s): Alejandro Belanche, Alison H. Kingston‐Smith, Gareth Griffith, C. J. Newbold
Software Mentions: 3
Published: over 7 years ago

10.3389/fnmol.2019.00030

An Appraisal of the Influence of the Metabotropic Glutamate 5 (mGlu5) Receptor on Sociability and Anxiety
Cited by: 16
Author(s): Arnau Ramos-Prats, Julia Kölldorfer, Elena Paolo, Maximilian Zeidler, Gabriele Schmid, Francesco Ferraguti
Software Mentions: 3
Published: over 7 years ago

10.3389/fnins.2017.00066

A Statistical Method to Distinguish Functional Brain Networks
Cited by: 14
Author(s): André Fujita, Maciel Calebe Vidal, Daniel Yasumasa Takahashi
Software Mentions: 3
Published: over 9 years ago

10.3389/fnins.2021.642324

Network Analysis of the CSF Proteome Characterizes Convergent Pathways of Cellular Dysfunction in ALS
Cited by: 4
Author(s): Alexander G. Thompson, Gray Eg, P. David Charles, Michele T.M. Hu, Kevin Talbot, Roman Fischer, Benedikt M. Kessler, Martin R Turner
Software Mentions: 3
Published: over 5 years ago

10.3389/fnins.2018.00041

Understanding the Generation of Network Bursts by Adaptive Oscillatory Neurons
Cited by: 22
Author(s): Tanguy Fardet, Mathieu Ballandras, Samuel Bottani, Stéphane Métens, Pascal Monceau
Software Mentions: 3
Published: over 8 years ago

10.1186/s12918-014-0108-0

Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters
Cited by: 4
Author(s): Thomas Kelder, Lars Verschuren, Ben van Ommen, Alain J. van Gool, Marijana Radonjić
Software Mentions: 3
Published: about 12 years ago

10.3389/fonc.2021.656675

Inferring Cell Subtypes and LncRNA Function by a Cell-Specific CeRNA Network in Breast Cancer
Cited by: 2
Author(s): Xin Chen, Jing Xu, Feng Zeng, Chao Yang, Weijun Sun, Yu Tao, Haokun Zhang, Li Yan
Software Mentions: 3
Published: over 5 years ago

10.1186/1752-0509-4-179

Understanding protein evolutionary rate by integrating gene co-expression with protein interactions
Cited by: 14
Author(s): Kaifang Pang, Chao Cheng, Zhenyu Xuan, Sheng Hu, Xiaotu Ma
Software Mentions: 3
Published: almost 16 years ago

10.1186/1752-0509-5-195

Model-based clustering reveals vitamin D dependent multi-centrality hubs in a network of vitamin-related proteins
Cited by: 15
Author(s): Thanh Phương Nguyễn, Marco Scotti, Melissa J. Morine, Corrado Priami
Software Mentions: 3
Published: almost 15 years ago

10.1186/s12918-018-0550-5

RETRACTED ARTICLE: Detangling PPI networks to uncover functionally meaningful clusters
Cited by: 5
Author(s): Sarah Hall-Swan, Jake Crawford, Rebecca Newman, Lenore Cowen
Software Mentions: 3
Published: over 8 years ago

10.1128/mSystems.00450-19

Oral Microbiome Alterations Associated with Early Childhood Caries Highlight the Importance of Carbohydrate Metabolic Activities
Cited by: 53
Author(s): Yuan Wang, Sa Wang, Chunyan Wu, Xi Chen, Zhuhui Duan, Qian Xu, Wen Jiang, Lei Xu, Tingting Wang, Lei Su, Ying Wang, Yadong Chen, Jie Zhang, Yun Huang, Suman Tong, Cheng Zhou, Shengjue Deng, Nan Qin
Software Mentions: 3
Published: almost 7 years ago

10.1186/1752-0509-8-12

Influence networks based on coexpression improve drug target discovery for the development of novel cancer therapeutics
Cited by: 10
Author(s): Nadia M. Penrod, Jason H. Moore
Software Mentions: 3
Published: almost 13 years ago

10.3389/fpls.2020.575564

Tomato Spotted Wilt Virus Benefits Its Thrips Vector by Modulating Metabolic and Plant Defense Pathways in Tomato
Cited by: 20
Author(s): Punya Nachappa, Jean F. Challacombe, David C. Margolies, James R. Nechols, Anna E. Whitfield, Dorith Rotenberg
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2016.01224

Multiple Assembly Rules Drive the Co-occurrence of Orthopteran and Plant Species in Grasslands: Combining Network, Functional and Phylogenetic Approaches
Cited by: 5
Author(s): Bertrand Fournier, Arnaud Mouly, François Gillet
Software Mentions: 3
Published: about 10 years ago

10.3389/fpls.2017.01217

Evolution of Daily Gene Co-expression Patterns from Algae to Plants
Cited by: 26
Author(s): Pedro de los Reyes, Francisco J. Romero–Campero, Marta Ruiz, Javier Romero, Federico Valverde
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2017.00893

Network Analysis Reveals a Common Host–Pathogen Interaction Pattern in Arabidopsis Immune Responses
Cited by: 24
Author(s): Hong Li, Yuan Zhou, Ziding Zhang
Software Mentions: 3
Published: over 9 years ago

10.1186/s12918-016-0329-5

Identification of key player genes in gene regulatory networks
Cited by: 32
Author(s): Maryam Nazarieh, Andreas Wiese, Thorsten Will, Mohamed Hamed, Volkhard Helms
Software Mentions: 3
Published: about 10 years ago

10.3389/fpls.2018.00798

Field-Based Metabolomics of Vitis vinifera L. Stems Provides New Insights for Genotype Discrimination and Polyphenol Metabolism Structuring
Cited by: 35
Author(s): Kévin Billet, Benjamin Houillé, Thomas Dugé de Bernonville, Sébastien Besseau, Audrey Oudin, Vincent Courdavault, Guillaume Delanoue, Laurence Guérin, Marc Clastre, Nathalie Giglioli-Guivarc’h, Arnaud Lanoue
Software Mentions: 3
Published: over 8 years ago

10.1186/1752-0509-6-32

Gene regulation is governed by a core network in hepatocellular carcinoma
Cited by: 14
Author(s): Zuguang Gu, Chenyu Zhang, Jin Wang
Software Mentions: 3
Published: over 14 years ago

10.3389/fpsyt.2018.00598

Diffusion of a Peer-Led Suicide Preventive Intervention Through School-Based Student Peer and Adult Networks
Cited by: 30
Author(s): Trevor A. Pickering, Peter A. Wyman, Karen Schmeelk-Cone, Chelsey Hartley, Thomas W. Valente, Anthony R. Pisani, Kelly L. Rulison, Charles H. Brown, Mark LoMurray
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpsyt.2018.00602

Genetic and Environmental Influences on the Affective Regulation Network: A Prospective Experience Sampling Analysis
Cited by: 5
Author(s): Laila Hasmi, Marjan Drukker, Sinan Gülöksüz, Wolfgang Viechtbauer, Evert Thiery, Cathérine Derom, Jim van Os
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpsyt.2020.579339

Mapping the Network of Social Cognition Domains in Children With Autism Spectrum Disorder Through Graph Analysis
Cited by: 6
Author(s): Maria Chiara Pino, Roberto Vagnetti, Francesco Masedu, Margherita Attanasio, Sergio Tiberti, Marco Valenti, Monica Mazza
Software Mentions: 3
Published: about 6 years ago

10.3389/fpsyg.2016.00018

Social Network Analysis and Nutritional Behavior: An Integrated Modeling Approach
Cited by: 15
Author(s): Alistair M. Senior, Mathieu Lihoreau, Jérôme Buhl, David Raubenheimer, Stephen J. Simpson
Software Mentions: 3
Published: almost 11 years ago

10.1186/s13104-018-3126-y

Modelling the structure of a ceRNA-theoretical, bipartite microRNA–mRNA interaction network regulating intestinal epithelial cellular pathways using R programming
Cited by: 12
Author(s): Jeffrey M. Robinson, Wendy A. Henderson
Software Mentions: 3
Published: almost 9 years ago

10.1186/1756-0500-3-142

Using GeneReg to construct time delay gene regulatory networks
Cited by: 33
Author(s): Tao Huang, Lei Liu, Qian Zhou, Kang Tu, Yixue Li, Lu Xie
Software Mentions: 3
Published: over 16 years ago

10.1186/1756-0500-4-149

Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool
Cited by: 45
Author(s): Jérôme Mariette, Céline Noirot, Christophe Klopp
Software Mentions: 3
Published: over 15 years ago

10.3389/fpubh.2020.582405

Care Deficiencies and Super-Organization of American Nursing Homes in Hospital Referral Region
Cited by: 3
Author(s): Tyler Pittman
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpubh.2020.587298

Depiction of Vaginal Microbiota in Women With High-Risk Human Papillomavirus Infection
Cited by: 25
Author(s): Zhentong Wei, Hongliang Chen, Chunfeng Wang, Genhua Yang, Song Han, Song‐Ling Zhang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fvets.2020.583715

Proximity Interactions in a Permanently Housed Dairy Herd: Network Structure, Consistency, and Individual Differences
Cited by: 15
Author(s): Kareemah Chopra, Holly R. Hodges, Z. E. Barker, Jorge A. Vázquez Diosdado, Jonathan Amory, Tom C. Cameron, Darren P. Croft, Nick Bell, Edward A. Codling
Software Mentions: 3
Published: almost 6 years ago

10.1098/rsos.170148

Individual-level movement bias leads to the formation of higher-order social structure in a mobile group of baboons
Cited by: 16
Author(s): Tyler R. Bonnell, Parry M.R. Clarke, S. Peter Henzi, Louise Barrett
Software Mentions: 3
Published: over 9 years ago

10.1098/rsos.200441

Suppression of the TGF-β pathway by a macrolide antibiotic decreases fibrotic responses by ocular fibroblasts in vitro
Cited by: 5
Author(s): Thomas Stahnke, Beata Gajda-Deryło, Anselm Jünemann, Oliver Stachs, Katharina A Sterenczak, Robert Ręjdak, Julia Beck, Ekkehard Schütz, Steffen Möller, Israel Barrantes, Gregor Warsow, Stephan Struckmann, Georg Fuellen
Software Mentions: 3
Published: about 6 years ago

10.1186/s13014-016-0672-0

Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks
Cited by: 37
Author(s): Agata Michna, Ulrike Schötz, Martin Selmansberger, Horst Zitzelsberger, Kirsten Lauber, Kristian Unger, Julia Heß
Software Mentions: 3
Published: over 10 years ago

10.1002/jrsm.1329

Automated methods to test connectedness and quantify indirectness of evidence in network meta‐analysis
Cited by: 12
Author(s): Howard Thom, Ian R. White, Nicky J Welton, Guobing Lu
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12889-018-5709-x

High-resolution epidemic simulation using within-host infection and contact data
Cited by: 21
Author(s): Vān Kính Nguyễn, Rafael Mikolajczyk, Esteban A. Hernandez‐Vargas
Software Mentions: 3
Published: over 8 years ago

10.1186/1742-6405-8-26

HIV-1 mutational pathways under multidrug therapy
Cited by: 13
Author(s): Glenn Lawyer, André Altmann, Alexander Thielen, Maurizio Zazzi, Anders Sönnerborg, Thomas Lengauer
Software Mentions: 3
Published: almost 16 years ago

10.1126/sciadv.aaw9724

Mating avoidance in female olive baboons ( Papio anubis ) infected by Treponema pallidum
Cited by: 23
Author(s): Filipa M. D. Paciência, Julie Rushmore, Idrissa S. Chuma, Iddi Lipende, Damien Caillaud, Sascha Knauf, Dietmar Zinner
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12870-014-0188-4

Metabolite and transcript profiling of berry skin during fruit development elucidates differential regulation between Cabernet Sauvignon and Shiraz cultivars at branching points in the polyphenol pathway
Cited by: 109
Author(s): Asfaw Degu, Uri Hochberg, Noga Sikron, Luca Venturini, Genny Buson, Ryan Ghan, Inbar Plaschkes, Albert Batushansky, Vered Chalifa‐Caspi, Fulvio Mattivi, Massimo Delledonne, Mario Pezzotti, Shimon Rachmilevitch, Grant R. Cramer, Aaron Fait
Software Mentions: 3
Published: over 12 years ago

10.1186/s12870-020-2254-4

PlaPPISite: a comprehensive resource for plant protein-protein interaction sites
Cited by: 22
Author(s): Xiaodi Yang, Shiping Yang, Huan Qi, Tianpeng Wang, Hong Li, Ziding Zhang
Software Mentions: 3
Published: over 6 years ago

10.1038/s41597-021-00880-4

A food web including parasites for kelp forests of the Santa Barbara Channel, California
Cited by: 6
Author(s): Dana N. Morton, Cristiana Y. Antonino, Farallon J. Broughton, Lauren N. Dykman, Armand M. Kuris, Kevin D. Lafferty
Software Mentions: 3
Published: over 5 years ago

10.1038/srep09512

Uncovering RNA binding proteins associated with age and gender during liver maturation
Cited by: 9
Author(s): Praneeet Chaturvedi, Yaseswini Neelamraju, Waqar Arif, Auinash Kalsotra, Sarath Chandra Janga
Software Mentions: 3
Published: over 11 years ago

10.1038/srep10540

Fractal features of soil particle size distribution in newly formed wetlands in the Yellow River Delta
Cited by: 29
Author(s): Junbao Yu, Xiaofei Lv, Ben Ma, Huifeng Wu, Siyao Du, Mo Zhou, Yanming Yang, Guoqi Han
Software Mentions: 3
Published: over 11 years ago

10.1186/s12860-020-00290-1

Impacts of drug resistance mutations on the structural asymmetry of the HIV-2 protease
Cited by: 4
Author(s): Pierre Laville, Sandrine Fartek, Natacha Cerisier, Delphine Flatters, Michel Petitjean, Leslie Regad
Software Mentions: 3
Published: over 6 years ago

10.1038/srep22095

Network centrality and seasonality interact to predict lice load in a social primate
Cited by: 64
Author(s): Julie Duboscq, Valéria Romano, Cédric Sueur, Andrew J. J. MacIntosh
Software Mentions: 3
Published: over 10 years ago

10.1038/srep24926

Scaling in topological properties of brain networks
Cited by: 18
Author(s): Soibam Shyamchand Singh, Budhachandra Khundrakpam, Andrew Reid, John D. Lewis, Alan C. Evans, Romana Ishrat, Bharat Sharma, R. K. Brojen Singh
Software Mentions: 3
Published: over 10 years ago

10.1038/srep26556

Network Signatures of IgG Immune Repertoires in Hepatitis B Associated Chronic Infection and Vaccination Responses
Cited by: 15
Author(s): Ya-Hui Chang, Hui-Chung Kuan, Tsung‐Hsin Hsieh, K. H., Chung-Hsiang Yang, Wei‐Bin Hsu, Shih‐Feng Tsai, Anne Chao, Hong-Hsing Liu
Software Mentions: 3
Published: over 10 years ago

10.1007/s41109-018-0087-y

An illustrated approach to Soft Textual Cartography
Cited by: 1
Author(s): Raphaël Ceré, Mattia Egloff
Software Mentions: 3
Published: about 8 years ago

10.1038/srep28429

Exploring pig trade patterns to inform the design of risk-based disease surveillance and control strategies
Cited by: 38
Author(s): Claire Guinat, Anne A. Relun, Ben Wall, Aaron L. Morris, Lucas Dixon, Dirk U. Pfeiffer
Software Mentions: 3
Published: over 10 years ago

10.1038/srep42638

FocusHeuristics – expression-data-driven network optimization and disease gene prediction
Cited by: 16
Author(s): Markus Ernst, Yang Du, Gregor Warsow, Mohamed Hamed, Nicole Endlich, Karlhans Endlich, Hugo Murua Escobar, Lisa-Madeleine Sklarz, Sina Sender, Christian Junghanß, Steffen Möller, Georg Fuellen, Stephan Struckmann
Software Mentions: 3
Published: over 9 years ago

10.1038/srep45823

Natural Scales in Geographical Patterns
Cited by: 11
Author(s): Telmo Menezes, Camille Roth
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-03778-7

Ecological diversity and co-occurrence patterns of bacterial community through soil profile in response to long-term switchgrass cultivation
Cited by: 41
Author(s): Shenggen He, Lixiang Guo, Mengying Niu, Fuhong Miao, Shuo Jiao, Tianming Hu, M. I. E. Long
Software Mentions: 3
Published: over 9 years ago

10.1186/s12920-019-0597-1

A network view of microRNA and gene interactions in different pathological stages of colon cancer
Cited by: 5
Author(s): Jia Wen, Benika Hall, Xinghua Shi
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-017-06773-0

Linking the morphological and metabolomic response of Lactuca sativa L exposed to emerging contaminants using GC × GC-MS and chemometric tools
Cited by: 50
Author(s): Carlos Hurtado, Hadi Parastar, Víctor Matamoros, Benjamı́n Piña, Romà Tauler, Josep M. Bayona
Software Mentions: 3
Published: over 9 years ago

10.1186/s12916-016-0664-9

Evaluation in alcohol use disorders – insights from the nalmefene experience
Cited by: 18
Author(s): Florian Naudet, Clément Palpacuer, Rémy Boussageon, Bruno Laviolle
Software Mentions: 3
Published: about 10 years ago

10.1186/s12879-021-06475-z

Association between tuberculosis in men and social network structure in Kampala, Uganda
Cited by: 5
Author(s): Paige B. Miller, Sarah Zalwango, Ronald Galiwango, Robert Kakaire, Juliet N. Sekandi, Lauren Steinbaum, John M. Drake, Christopher C. Whalen, Noah Kiwanuka
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-15598-w

Early diverging lineages within Cryptomycota and Chytridiomycota dominate the fungal communities in ice-covered lakes of the McMurdo Dry Valleys, Antarctica
Cited by: 62
Author(s): Keilor Rojas-Jiménez, Christian Wurzbacher, Elizabeth C. Bourne, Amy Chiuchiolo, John C. Priscu, Hans‐Peter Grossart
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12865-019-0297-9

Comprehensive analyses of long non-coding RNA expression profiles by RNA sequencing and exploration of their potency as biomarkers in psoriatic arthritis patients
Cited by: 12
Author(s): Tao Yue, Mei Ji, Huanru Qu, Mengru Guo, Fengmin Bai, Zhanming Zhang, Weifeng Wang, Xuming Gong, Zhenghua Zhang
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-017-17330-0

Identification of a gene signature for discriminating metastatic from primary melanoma using a molecular interaction network approach
Cited by: 31
Author(s): Rahul Metri, Abhilash Mohan, Jérémie Nsengimana, Joanna Poźniak, Carmen Molina‐París, Julia Newton-Bishop, D. Timothy Bishop, Nagasuma Chandra
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12913-021-06798-2

Empirically identified networks of healthcare providers for adults with mental illness
Cited by: 2
Author(s): Joshua Breslau, Beth Dana, Harold Alan Pincus, Marcela Horvitz-Lennon, Luke J. Matthews
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-018-20721-6

Network analysis of coronary artery disease risk genes elucidates disease mechanisms and druggable targets
Cited by: 42
Author(s): Harri Lempiäinen, Ingrid Brænne, Tom Michoel, Vinicius Tragante, Baiba Vilne, Tom R. Webb, Theodosios Kyriakou, Johannes Eichner, Lingyao Zeng, Christina Willenborg, Oscar Franzén, Arno Ruusalepp, Anuj Goel, Sander W. van der Laan, Claudia Biegert, Stephen E. Hamby, Husain Ahammad Talukdar, Hassan Foroughi Asl, Martin Dichgans, Tobias Dreker, Mira Graettinger, Philip Gribbon, Thorsten Kessler, Rainer Malik, Matthias Prestel, Barbara Stiller, Christine Schofield, Gérard Pasterkamp, Hugh Watkins, Nilesh J. Samani, Timo Wittenberger, Jeanette Erdmann, Heribert Schunkert, Folkert W. Asselbergs, Johan Björkegren
Software Mentions: 3
Published: over 8 years ago

10.1186/s40478-018-0524-2

Integrated proteomics and network analysis identifies protein hubs and network alterations in Alzheimer’s disease
Cited by: 111
Author(s): Qi Zhang, Cheng Ma, Marla Gearing, Peng George Wang, Lih‐Shen Chin, Lian Li
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-29725-8

Fast Maximum Likelihood Estimation via Equilibrium Expectation for Large Network Data
Cited by: 20
Author(s): Maksym Byshkin, Alex Stivala, Antonietta Mira, Garry Robins, Alessandro Lomi
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-30845-4

Topological motifs populate complex networks through grouped attachment
Cited by: 4
Author(s): Jae Young Choi, Doheon Lee
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-32020-1

Structural robustness of mammalian transcription factor networks reveals plasticity across development
Cited by: 3
Author(s): José Luis Caldú-Primo, Elena Álvarez-Buylla, José Dávila-Velderrain
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-019-5603-7

Genomic comparison of serogroups O159 and O170 with other Vibrio cholerae serogroups
Cited by: 8
Author(s): Zhenpeng Li, Xin Lü, Duochun Wang, Wei Li Liang, Jingyun Zhang, Jie Li, Jialiang Xu, Bo Pang, Biao Kan
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2164-16-S10-S7

Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data
Cited by: 7
Author(s): Panagiotis Papasaikas, Arvind Rao, Peter Huggins, Juan Valcárcel, A. Javier Lopez
Software Mentions: 3
Published: about 11 years ago

10.1038/s41598-018-33773-5

Functional eubacteria species along with trans-domain gut inhabitants favour dysgenic diversity in oxalate stone disease
Cited by: 12
Author(s): Mangesh V. Suryavanshi, Shrikant Bhute, Rahul P. Gune, Yogesh S. Shouche
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-37706-0

Epidemiological and molecular forensics of cholera recurrence in Haiti
Cited by: 16
Author(s): Stanislas Rebaudet, Sandra Moore, Emmanuel Rossignol, Hervé Bogreau, Jean Gaudart, Anne‐Cécile Normand, Marie-José Laraque, Paul Adrien, Jacques Boncy, Renaud Piarroux
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-39796-w

Selecting variants of unknown significance through network-based gene-association significantly improves risk prediction for disease-control cohorts
Cited by: 17
Author(s): Anastasis Oulas, George Minadakis, Margarita Zachariou
Software Mentions: 3
Published: over 7 years ago

10.1038/s41396-021-00913-1

Erosion reduces soil microbial diversity, network complexity and multifunctionality
Cited by: 201
Author(s): Liping Qiu, Qian Zhang, Hansong Zhu, Peter B. Reich, Samiran Banerjee, Marcel G. A. van der Heijden, Michael J. Sadowsky, Satoshi Ishii, Xiaoxu Jia, Mingan Shao, Baoyuan Liu, Huan Jiang, Haiqiang Li, Xiaorong Wei
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-016-3066-7

Path2enet: generation of human pathway-derived networks in an expression specific context
Cited by: 1
Author(s): Conrad Droste, Javier De Las Rivas
Software Mentions: 3
Published: about 10 years ago

10.1186/s12864-021-07815-8

TAD cliques predict key features of chromatin organization
Cited by: 4
Author(s): Tharvesh Moideen Liyakat Ali, Annaël Brunet, Philippe Collas, Jonas Paulsen
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-48925-4

Network construction of gastric microbiome and organization of microbial modules associated with gastric carcinogenesis
Cited by: 17
Author(s): Chan Hyuk Park, Jae Gon Lee, Areum Lee, Chang Soo Eun, Dong Soo Han
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-019-52023-w

Compartmentalized evolution of Bovine Viral Diarrhoea Virus type 2 in an immunotolerant persistently infected cow
Cited by: 7
Author(s): Barbara Colitti, Chiara Nogarol, Mario Giacobini, Maria Teresa Capucchio, Ilaria Biasato, Sergio Rosati, Luigi Bertolotti
Software Mentions: 3
Published: about 7 years ago

10.1186/s42523-021-00116-1

Molecular and culture-based assessment of the microbiome in a zebrafish (Danio rerio) housing system during set-up and equilibration
Cited by: 4
Author(s): Aaron C. Ericsson, Susheel Bhanu Busi, Daniel R. Davis, Henda Nabli, David C. Eckhoff, Rebecca A. Dorfmeyer, Giedre Turner, Payton S. Oswalt, Marcus J Crim, Elizabeth C. Bryda
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-53569-5

Qualitative microbiome profiling along a wastewater system in Kampala, Uganda
Cited by: 4
Author(s): Pierre H. H. Schneeberger, Samuel Fuhrimann, Sören L. Becker, Joël F. Pothier, Brion Duffy, Christian Beuret, Jürg E. Frey, Jürg Utzinger
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-54720-y

Statistical characteristics of amino acid covariance as possible descriptors of viral genomic complexity
Cited by: 7
Author(s): C. K. Sruthi, Meher K. Prakash
Software Mentions: 3
Published: almost 7 years ago

10.1186/1471-2164-16-S11-S4

A method for developing regulatory gene set networks to characterize complex biological systems
Cited by: 1
Author(s): Chayaporn Suphavilai, Zhu Li, Jake Y. Chen
Software Mentions: 3
Published: almost 11 years ago

10.1038/s41598-019-57142-y

Targeting redox metabolism: the perfect storm induced by acrylamide poisoning in the brain
Cited by: 13
Author(s): Demetrio Raldúa, Marta Casado, Eva Prats, Melissa Faria, Francesc Puig‐Castellví, Yolanda Pérez, Ignacio Alfonso, Chuan-Yu Hsu, Mark A. Arick, Natàlia García-Reyero, Tamar Ziv, Shani Ben-Lulu, Arie Admon, Benjamı́n Piña
Software Mentions: 3
Published: almost 7 years ago

Projects: cran: igraph

Science Score: 100/100

Bonuses:

Papers Mentioning igraph 1,555