cran: igraph | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-53569-5

Qualitative microbiome profiling along a wastewater system in Kampala, Uganda
Cited by: 4
Author(s): Pierre H. H. Schneeberger, Samuel Fuhrimann, Sören L. Becker, Joël F. Pothier, Brion Duffy, Christian Beuret, Jürg E. Frey, Jürg Utzinger
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-54720-y

Statistical characteristics of amino acid covariance as possible descriptors of viral genomic complexity
Cited by: 7
Author(s): C. K. Sruthi, Meher K. Prakash
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-57142-y

Targeting redox metabolism: the perfect storm induced by acrylamide poisoning in the brain
Cited by: 13
Author(s): Demetrio Raldúa, Marta Casado, Eva Prats, Melissa Faria, Francesc Puig‐Castellví, Yolanda Pérez, Ignacio Alfonso, Chuan-Yu Hsu, Mark A. Arick, Natàlia García-Reyero, Tamar Ziv, Shani Ben-Lulu, Arie Admon, Benjamı́n Piña
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-57191-3

Decision-making process during collective movement initiation in golden snub-nosed monkeys (Rhinopithecus roxellana)
Cited by: 8
Author(s): YangQuan Chen, Ruliang Pan, Wang Xiao-wei, Xiao-Guang Qi, Zhao Hong-yan, Songtao Guo, Yi Ren, Weiwei Fu, Zirui Zhu, Baoguo Li
Software Mentions: 3
Published: over 6 years ago

10.1098/rspb.2019.2880

A natural catastrophic turnover event: individual sociality matters despite community resilience in wild house mice
Cited by: 17
Author(s): Julian C. Evans, Jonas I. Liechti, Bruce Boatman, Barbara König
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-60737-5

L-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks
Cited by: 18
Author(s): Marianna Milano, Tijana Milenković, Mario Cannataro, Pietro Hiram Guzzi
Software Mentions: 3
Published: over 6 years ago

10.1098/rspb.2018.0023

Collective ritual and social support networks in rural South India
Cited by: 23
Author(s): Eleanor A. Power
Software Mentions: 3
Published: over 8 years ago

10.1098/rspb.2017.1899

Model recommendations meet management reality: implementation and evaluation of a network-informed vaccination effort for endangered Hawaiian monk seals
Cited by: 16
Author(s): Stacie J. Robinson, Michelle Barbieri, Samantha Murphy, Jason D. Baker, Albert L. Harting, Meggan E. Craft, Charles L. Littnan
Software Mentions: 3
Published: over 8 years ago

10.1098/rspb.2017.2116

Deep pelagic food web structure as revealed by in situ feeding observations
Cited by: 74
Author(s): C. Anela Choy, Steven H. D. Haddock, Bruce H. Robison
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-020-67718-8

No evidence for a relationship between social closeness and similarity in resting-state functional brain connectivity in schoolchildren
Cited by: 3
Author(s): Carolyn Beth McNabb, Laura Grace Burgess, Amy Fancourt, Nancy Mulligan, Lily FitzGibbon, Patricia M. Riddell, Kou Murayama
Software Mentions: 3
Published: about 6 years ago

10.1016/j.prevetmed.2021.105443

Spatial and temporal variation in proximity networks of commercial dairy cattle in Great Britain
Cited by: 5
Author(s): Helen R. Fielding, Matthew J. Silk, Trevelyan J. McKinley, Richard J. Delahay, Jared K. Wilson‐Aggarwal, Laetitia Gauvin, Laura Ozella, Ciro Cattuto, Robbie A. McDonald
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1003403

The Escherichia coli Phosphotyrosine Proteome Relates to Core Pathways and Virulence
Cited by: 65
Author(s): Anne Marie Hansen, Raghothama Chaerkady, Jyoti Sharma, J. Javier Díaz-Mejía, Nidhi Tyagi, Santosh Renuse, Harrys K.C. Jacob, Sneha M. Pinto, Nandini A. Sahasrabuddhe, Min‐Sik Kim, Bernard Delanghe, Narayanaswamy Srinivasan, Andrew Emili, James B. Kaper, Akhilesh Pandey
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.ppat.1001074

Global Genotype-Phenotype Correlations in Pseudomonas aeruginosa
Cited by: 11
Author(s): Claudia Pommerenke, Mathias Müsken, Tanja Becker, Andreas Dötsch, Frank Klawonn, Susanne Häußler
Software Mentions: 3
Published: about 16 years ago

10.1038/s41598-020-72477-7

Play fighting social networks do not predict injuries from later aggression
Cited by: 12
Author(s): Simon P. Turner, Jennifer E. Weller, Irene Camerlink, Gareth Arnott, Taegyu Choi, Andrea Doeschl‐Wilson, Marianne Farish, Simone Foister
Software Mentions: 3
Published: almost 6 years ago

10.1021/acs.jctc.0c01308

Reconstruction of ARNT PAS-B Unfolding Pathways by Steered Molecular Dynamics and Artificial Neural Networks
Cited by: 12
Author(s): Stefano Motta, Alessandro Pandini, Arianna Fornili, Laura Bonati
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-73591-2

The spatial and temporal dynamics of global meat trade networks
Cited by: 15
Author(s): Min Gon Chung, Kelly Kapsar, Kenneth A. Frank, Jianguo Liu
Software Mentions: 3
Published: almost 6 years ago

10.1155/2021/8533464

Identification of a Nomogram from Ferroptosis-Related Long Noncoding RNAs Signature to Analyze Overall Survival in Patients with Bladder Cancer
Cited by: 22
Author(s): Yuanshan Cui, Yumeng Chai, Xuanyan Che, Yong Zhang
Software Mentions: 3
Published: about 5 years ago

10.1128/JB.00245-17

Polyvalent Proteins, a Pervasive Theme in the Intergenomic Biological Conflicts of Bacteriophages and Conjugative Elements
Cited by: 28
Author(s): Lakshminarayan M. Iyer, A. Maxwell Burroughs, Swadha Anand, Robson Francisco de Souza, L. Aravind
Software Mentions: 3
Published: about 9 years ago

10.1200/CCI.17.00079

Overcoming the Straw Man Effect in Oncology: Visualization and Ranking of Chemotherapy Regimens Using an Information Theoretic Approach
Cited by: 1
Author(s): Jeremy L. Warner, Peter Yang, Gil Alterovitz
Software Mentions: 3
Published: almost 9 years ago

10.1172/jci.insight.140028

Identification of antigen-specific TCR sequences based on biological and statistical enrichment in unselected individuals
Cited by: 9
Author(s): Neal Smith, Bert Ruiter, Yamini Virkud, Ang A. Tu, Brinda Monian, James Moon, J. Christopher Love, Wayne Shreffler
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-85281-8

Characterization of the microbial communities in wheat tissues and rhizosphere soil caused by dwarf bunt of wheat
Cited by: 13
Author(s): Tongshuo Xu, Wenli Jiang, Dandan Qin, Taiguo Liu, Zhang Jian-min, Wanquan Chen, Li Gao
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-86124-2

Fine scale infectious disease modeling using satellite-derived data
Cited by: 2
Author(s): Nistara Randhawa, Hugo Mailhot, Duncan Temple Lang, Beatriz Martínez‐López, Kirsten Gilardi, Jonna A. K. Mazet
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-86409-6

Variations in Schedule III prescription patterns in a Medicaid population pre- and post-policy
Cited by: 0
Author(s): Radhakrishnan Nagarajan, Jeffery Talbert, Craig S. Miller, Jeffrey L. Ebersole
Software Mentions: 3
Published: over 5 years ago

10.1007/s00251-017-1051-1

Signatures of historical selection on MHC reveal different selection patterns in the moor frog (Rana arvalis)
Cited by: 15
Author(s): Maria Cortázar‐Chinarro, Yvonne Meyer‐Lucht, Anssi Laurila, Jacob Höglund
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-021-90498-8

Evolution of networks of protein domain organization
Cited by: 20
Author(s): M. Fayez Aziz, Gustavo Caetano‐Anollés
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-93122-x

Quantum inspired community detection for analysis of biodiversity change driven by land-use conversion and climate change
Cited by: 2
Author(s): Sana Akbar, Sri Khetwat Saritha
Software Mentions: 3
Published: about 5 years ago

10.1007/s11357-020-00195-z

Nursing homes and the elderly regarding the COVID-19 pandemic: situation report from Hungary
Cited by: 37
Author(s): Gábor Kemenesi, László Kornya, Gábor Endre Tóth, Kornélia Kurucz, Safia Zeghbib, B Somogyi, Viktor Zöldi, Péter Urbán, Róbert Herczeg, Ferenc Jakab
Software Mentions: 3
Published: over 6 years ago

10.1016/j.gpb.2019.09.004

Machine Learning to Detect Alzheimer’s Disease from Circulating Non-coding RNAs
Cited by: 63
Author(s): Nicole Ludwig, Tobias Fehlmann, Fabian Kern, M. Gogol, Walter Maetzler, Stephanie Deutscher, Simone Gurlit, Claudia Schulte, Anna‐Katharina von Thaler, Christian Deuschle, Florian Metzger, Daniela Berg, Ulrike Suenkel, Verena Keller, Christina Backes, Hans‐Peter Lenhof, Eckart Meese
Software Mentions: 3
Published: about 7 years ago

10.1016/j.gpb.2018.01.001

Comparative Analysis of Human Genes Frequently and Occasionally Regulated by m 6 A Modification
Cited by: 3
Author(s): Yuan Zhou, Qinghua Cui
Software Mentions: 3
Published: over 8 years ago

10.1186/s13073-021-00874-2

Human breast microbiome correlates with prognostic features and immunological signatures in breast cancer
Cited by: 85
Author(s): Alice Tzeng, Naseer Sangwan, Margaret Jia, Chin-Chih Liu, Karen Keslar, Erinn Downs‐Kelly, Robert L. Fairchild, Zahraa Al‐Hilli, Stephen R. Grobmyer, Charis Eng
Software Mentions: 3
Published: over 5 years ago

10.1093/gbe/evy042

Conservation of Sex-Linked Markers among Conspecific Populations of a Viviparous Skink, Niveoscincus ocellatus, Exhibiting Genetic and Temperature-Dependent Sex Determination
Cited by: 38
Author(s): Peta Hill, Christopher P. Burridge, Tariq Ezaz, Erik Wapstra
Software Mentions: 3
Published: over 8 years ago

10.1093/gbe/evw077

“Every Gene Is Everywhere but the Environment Selects”: Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis
Cited by: 80
Author(s): Marco Fondi, Antti Karkman, Manu Tamminen, Emanuele Bosi, Marko Virta, Renato Fani, Eric J. Alm, James O. McInerney
Software Mentions: 3
Published: over 10 years ago

10.1186/s13059-019-1904-z

CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single cells
Cited by: 21
Author(s): Alan Perez-Rathke, Qiu Sun, Boshen Wang, Valentina Boeva, Zongshu Shao, Jie Liang
Software Mentions: 3
Published: over 6 years ago

10.1186/s13059-019-1713-4

Single-cell transcriptomics unveils gene regulatory network plasticity
Cited by: 161
Author(s): Giovanni Iacono, Ramón Massoni-Badosa, Holger Heyn
Software Mentions: 3
Published: over 7 years ago

10.1186/1751-0473-7-12

RMol: a toolset for transforming SD/Molfile structure information into R objects
Cited by: 1
Author(s): Martin Grábner, Курт Вармуза, Matthias Dehmer
Software Mentions: 3
Published: almost 14 years ago

10.1186/s13059-015-0627-z

Evaluating intra- and inter-individual variation in the human placental transcriptome
Cited by: 45
Author(s): David A. Hughes, Martin Kircher, Zhisong He, Songlin Guo, Genevieve Fairbrother, Carlos S. Moreno, Philipp Khaitovich, Mark Stoneking
Software Mentions: 3
Published: over 11 years ago

10.1186/s13059-015-0592-6

BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies
Cited by: 110
Author(s): Ke Yuan, Thomas Sakoparnig, Florian Markowetz, Niko Beerenwinkel
Software Mentions: 3
Published: over 11 years ago

10.1007/s12263-014-0439-x

White adipose tissue reference network: a knowledge resource for exploring health-relevant relations
Cited by: 10
Author(s): Thomas Kelder, Georg Summer, Martien P. M. Caspers, Evert M. van Schothorst, Jaap Keijer, Loes P. M. Duivenvoorde, К. Schimrigk, Anja Voigt, Laura Bohnert, Catalina Picó, M. Luisa Bonet, A. Dembińska-Kieć, Małgorzata Malczewska-Malec, Beata Kieć‐Wilk, Josep Maria del Bas, Antoni Caimari, Lluı́s Arola, Marjan van Erk, Ben van Ommen, Marijana Radonjić
Software Mentions: 3
Published: almost 12 years ago

10.1007/s12263-014-0408-4

Genetic associations with micronutrient levels identified in immune and gastrointestinal networks
Cited by: 12
Author(s): Melissa J. Morine, Jacqueline Pontes Monteiro, Carolyn Wise, Candee H. Teitel, Lisa Pence, Anna-leila Williams, Baitang Ning, Beverly McCabe‐Sellers, Catherine M. Champagne, J. Rick Turner, Beatrice Shelby, Margaret L. Bogle, Richard D. Beger, Corrado Priami, Jim Kaput
Software Mentions: 3
Published: over 12 years ago

10.1038/tp.2017.37

Modeling anorexia nervosa: transcriptional insights from human iPSC-derived neurons
Cited by: 21
Author(s): Priscilla D. Negraes, Fernanda R. Cugola, Roberto H. Herai, Cleber A. Trujillo, Alexandre S. Cristino, Thanathom Chailangkarn, Alysson R. Muotri, Vikas Duvvuri
Software Mentions: 3
Published: over 9 years ago

10.1080/22221751.2019.1595985

Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing Escherichia coli strains
Cited by: 34
Author(s): David A. Montero, Felipe Del Canto, Juliana Velasco, Rocío Colello, Nora Lía Padola, Juan Carlos Salazar, Carla San Martin, Ángel Oñate, Jorge Blanco, David A. Rasko, Carmen Contreras, José L. Puente, Flemming Scheutz, Eelco Franz, Roberto Vidal
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.8308

Dynamic epigenetic changes to VHL occur with sunitinib in metastatic clear cell renal cancer
Cited by: 14
Author(s): Grant D. Stewart, Thomas Powles, Christophe Van Neste, Alison Meynert, Fiach C. O’Mahony, A. Douglas Laird, Dieter Deforce, Filip Van Nieuwerburgh, Geert Trooskens, Wim Van Criekinge, Tim De Meyer, David J. Harrison
Software Mentions: 3
Published: over 10 years ago

10.1128/mBio.01793-16

Role of the ESCRT Complexes in Telomere Biology
Cited by: 9
Author(s): Anna K. Dieckmann, Vera Babin, Yaniv Harari, Roland Eils, Rainer König, Brian Luke, Martin Kupiec
Software Mentions: 3
Published: over 9 years ago

10.3390/genes12030367

Multivariate Analysis Identifies Eight Novel Loci Associated with Meat Productivity Traits in Sheep
Cited by: 5
Author(s): Alexander S. Zlobin, Pavel S. Nikulin, Н. А. Волкова, N. A. Zinovieva, Б. С. Иолчиев, В. А. Багиров, П. М. Бородин, Т. И. Аксенович, Yakov A. Tsepilov
Software Mentions: 3
Published: over 5 years ago

10.1128/mBio.02002-18

Network-Guided Discovery of Influenza Virus Replication Host Factors
Cited by: 22
Author(s): Emily E. Ackerman, Eiryo Kawakami, Manami Katoh, Tokiko Watanabe, Shinji Watanabe, Yuriko Tomita, Tiago J. S. Lopes, Yoshikazu Matsuoka, Hiroaki Kitano, Jason E. Shoemaker, Yoshihiro Kawaoka
Software Mentions: 3
Published: over 7 years ago

10.3390/genes9110519

mully: An R Package to Create, Modify and Visualize Multilayered Graphs
Cited by: 12
Author(s): Zaynab Hammoud, Frank Krämer
Software Mentions: 3
Published: almost 8 years ago

10.1128/mBio.01470-21

Intra-Ramanome Correlation Analysis Unveils Metabolite Conversion Network from an Isogenic Population of Cells
Cited by: 8
Author(s): Yuehui He, Shi Huang, Peng Zhang, Yicai Ji, Jian Xu
Software Mentions: 3
Published: about 5 years ago

10.1534/g3.119.400972

Network Analysis of Linkage Disequilibrium Reveals Genome Architecture in Chum Salmon
Cited by: 21
Author(s): Garrett J. McKinney, Megan V. McPhee, Carita E. Pascal, James E. Seeb, Lisa W. Seeb
Software Mentions: 3
Published: over 6 years ago

10.18632/oncotarget.10947

Integrated analysis miRNA and mRNA profiling in patients with severe oligozoospermia reveals miR-34c-3p downregulates PLCXD3 expression
Cited by: 22
Author(s): Zhiming Li, Zaozao Zheng, Jun Ruan, Zhi Li, Xuan Zhuang, Chi-Meng Tzeng
Software Mentions: 3
Published: about 10 years ago

10.1128/mSystems.00450-19

Oral Microbiome Alterations Associated with Early Childhood Caries Highlight the Importance of Carbohydrate Metabolic Activities
Cited by: 53
Author(s): Yuan Wang, Sa Wang, Chunyan Wu, Xi Chen, Zhuhui Duan, Qian Xu, Wen Jiang, Lei Xu, Tingting Wang, Lei Su, Ying Wang, Yadong Chen, Jie Zhang, Yun Huang, Suman Tong, Cheng Zhou, Shengjue Deng, Nan Qin
Software Mentions: 3
Published: almost 7 years ago

10.3389/fvets.2020.00219

Network Analysis of Cattle Movement in Mato Grosso Do Sul (Brazil) and Implications for Foot-and-Mouth Disease
Cited by: 9
Author(s): Taís Cristina de Menezes, Ivette Luna, Sílvia Helena Galvão de Miranda
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2014.00219

Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Cited by: 968
Author(s): David Berry, Stefanie Widder
Software Mentions: 3
Published: over 12 years ago

10.18632/oncotarget.14918

A meta-analysis of HLA peptidome composition in different hematological entities: entity-specific dividing lines and “pan-leukemia” antigens
Cited by: 11
Author(s): Linus Backert, Daniel J. Kowalewski, Juliane S. Walz, Heiko Schuster, Claudia Berlin, Marian C. Neidert, Mirle Schemionek, Tim H. Brümmendorf, Vladan Vučinić, Dietger Niederwieser, Lothar Kanz, Helmut R. Salih, Oliver Kohlbacher, Katja Weisel, Hans‐Georg Rammensee, Stefan Stevanović, Juliane S. Walz
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2021.704052

Phylogeny of the Varidnaviria Morphogenesis Module: Congruence and Incongruence With the Tree of Life and Viral Taxonomy
Cited by: 13
Author(s): Anthony C. Woo, Morgan Gaïa, Julien Guglielmini, Violette Da Cunha, Patrick Forterre
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2020.01261

Can We Use Functional Genetics to Predict the Fate of Nitrogen in Estuaries?
Cited by: 20
Author(s): Eric J. Raes, Kristen Karsh, Adam J. Kessler, Perran L. M. Cook, Bronwyn H. Holmes, Jodie van de Kamp, Levente Bodrossy, Andrew Bissett
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2015.00522

Microbial responses to changes in flow status in temporary headwater streams: a cross-system comparison
Cited by: 39
Author(s): Catherine M. Febria, Jacob D. Hosen, Byron C. Crump, Margaret A. Palmer, D. Dudley Williams
Software Mentions: 3
Published: over 11 years ago

10.1038/s41396-021-00913-1

Erosion reduces soil microbial diversity, network complexity and multifunctionality
Cited by: 201
Author(s): Liping Qiu, Qian Zhang, Hansong Zhu, Peter B. Reich, Samiran Banerjee, Marcel G. A. van der Heijden, Michael J. Sadowsky, Satoshi Ishii, Xiaoxu Jia, Mingan Shao, Baoyuan Liu, Huan Jiang, Haiqiang Li, Xiaorong Wei
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.00645

A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata
Cited by: 26
Author(s): Jawad Merhej, Antonin Thiébaut, Corinne Blugeon, Juliette Pouch, Mohammed el amine Ali Chaouche, Jean‐Michel Camadro, Stéphane Le Crom, Gaëlle Lelandais, Frédéric Devaux
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2018.00999

Bacterial Communities in Riparian Sediments: A Large-Scale Longitudinal Distribution Pattern and Response to Dam Construction
Cited by: 35
Author(s): Juan Chen, Peifang Wang, Chao Wang, Xun Wang, Lingzhan Miao, Sheng Liu, Qiusheng Yuan
Software Mentions: 3
Published: over 8 years ago

10.3389/fimmu.2017.01726

Shared IgG Infection Signatures vs. Hemorrhage-Restricted IgA Clusters in Human Dengue: A Phenotype of Differential Class-Switch via TGFβ1
Cited by: 4
Author(s): Chung‐Hao Huang, Ya-Hui Chang, Chun‐Yu Lin, Wen‐Hung Wang, Hui-Chung Kuan, Ya-Ju Hsieh, Yuwei Wang, Chung-Hsiang Yang, Jhen-Yan Chiu, Shih‐Feng Tsai, Yen-Hsu Chen, Hong-Hsing Liu
Software Mentions: 3
Published: almost 9 years ago

10.3389/fgene.2017.00043

Pancreatic Islet Protein Complexes and Their Dysregulation in Type 2 Diabetes
Cited by: 18
Author(s): Helle Pedersen, Valborg Guðmundsdóttir, Søren Brunak
Software Mentions: 3
Published: over 9 years ago

10.16910/jemr.12.3.4

Improving the pilot selection process by using eye-tracking tools
Cited by: 1
Author(s): Slaviša Vlačić, Aleksandar Knežević, Sanja Rođenkov, Saptarshi Mandal, Panagiotis A. Vitsas
Software Mentions: 3
Published: over 6 years ago

10.1155/2019/9736968

The Potential Link between Gut Microbiota and Serum TRAb in Chinese Patients with Severe and Active Graves’ Orbitopathy
Cited by: 13
Author(s): Tingting Shi, Lin Hua, Hua Wang, Xin Zhong
Software Mentions: 3
Published: over 6 years ago

10.1186/s12939-019-0911-8

Can social network analysis help to include marginalised young women in structural support programmes in Botswana? A mixed methods study
Cited by: 3
Author(s): David Loutfi, Neil Andersson, Susan Law, Jon Salsberg, Jeannie Haggerty, Leagajang Kgakole, Anne Cockcroft
Software Mentions: 3
Published: over 7 years ago

10.1186/s10194-020-1077-x

Burden of migraine in Finland: multimorbidity and phenotypic disease networks in occupational healthcare
Cited by: 12
Author(s): Minna A. Korolainen, Samuli Tuominen, Samu Kurki, Mariann I. Lassenius, Iiro Toppila, Timo Purmonen, Jaana Santaholma, M Nissilä
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2019.00916

An Integrated System Biology Approach Yields Drug Repositioning Candidates for the Treatment of Heart Failure
Cited by: 3
Author(s): Guodong Yang, Aiqun Ma, Zhaohui S. Qin
Software Mentions: 3
Published: almost 7 years ago

10.18632/oncotarget.24795

Molecular signatures associated with tumor-specific immune response in melanoma patients treated with dendritic cell-based immunotherapy
Cited by: 11
Author(s): Tamara García-Salum, Andrea Villablanca, Franziska Matthäus, Andrés Tittarelli, Mauricio Baeza, Carlos Pereda, María Alejandra Gleisner, Fermín E. González, Mercedes López, Jörg D. Hoheisel, Johannes Norgauer, Peter J. Gebicke‐Haerter, Flavio Salazar‐Onfray
Software Mentions: 3
Published: over 8 years ago

10.3390/ijerph17031009

Geographical Patterns of Algal Communities Associated with Different Urban Lakes in China
Cited by: 15
Author(s): Shengnan Chen, Hao He, Rongrong Zong, Kaiwen Liu, Miaomiao Yan, Lei Xu, Yutian Miao
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.701331

Modularity in Biological Networks
Cited by: 17
Author(s): Sergio Antonio Alcalá-Corona, Santiago Sandoval-Motta, Jesús Espinal-Enríquez, Enrique Hernández‐Lemus
Software Mentions: 3
Published: about 5 years ago

10.18632/oncotarget.25216

Parenclitic networks for predicting ovarian cancer
Cited by: 25
Author(s): Harry J. Whitwell, Oleg Blyuss, Usha Menon, John F. Timms, Alexey Zaikin
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.2749

Ecological consequences of colony structure in dynamic ant nest networks
Cited by: 11
Author(s): Stephen Ellis, Daniel W. Franks, Elva J. H. Robinson
Software Mentions: 3
Published: over 9 years ago

10.1002/ece3.7128

Chimpanzee identification and social network construction through an online citizen science platform
Cited by: 5
Author(s): Maureen S. McCarthy, Colleen R. Stephens, Paula Dieguez, Liran Samuni, Marie‐Lyne Després‐Einspenner, Briana Harder, Anja Landsmann, Laura Lynn, Nuria Maldonado, Zuzana Ročkaiová, Jane Widness, Roman M. Wittig, Christophe Boesch, Hjalmar S. Kühl, Mimi Arandjelovic
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2019.00932

Identification and Classification of Differentially Expressed Genes and Network Meta-Analysis Reveals Potential Molecular Signatures Associated With Tuberculosis
Cited by: 25
Author(s): Aftab Alam, Nikhat Imam, Mohd Murshad Ahmed, Safiya Tazyeen, Naaial Tamkeen, Anam Farooqui, Md. Zubbair Malik, Romana Ishrat
Software Mentions: 3
Published: almost 7 years ago

10.1002/jia2.25327

Oral abstracts of the 10th IAS Conference on HIV Science, 21‐24 July 2019, Mexico City, Mexico
Cited by: 12
Author(s):
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2020.500064

A Machine Learning Approach to Predicting Autism Risk Genes: Validation of Known Genes and Discovery of New Candidates
Cited by: 22
Author(s): Ying Lin, Shiva Afshar, Anjali M. Rajadhyaksha, James B. Potash, Shizhong Han
Software Mentions: 3
Published: about 6 years ago

10.1016/j.jid.2019.08.444

IL-36 Promotes Systemic IFN-I Responses in Severe Forms of Psoriasis
Cited by: 58
Author(s): Marika Catapano, Marta Vergnano, Marco Romano, Satveer K. Mahil, Siew Eng Choon, A. D. Burden, Helen Young, Ian Carr, HJ Lachmann, Giovanna Lombardi, Catherine Smith, Francesca D. Ciccarelli, Jonathan Barker, Francesca Capon
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.5269

Spatial differences in genetic diversity and northward migration suggest genetic erosion along the boreal caribou southern range limit and continued range retraction
Cited by: 14
Author(s): Laura M. Thompson, Cornelya F. C. Klütsch, Micheline Manseau, Paul J. Wilson
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.5473

Vocal networks remain stable after a disturbance in Emei music frogs
Cited by: 3
Author(s): Ke Deng, Jianguo Cui
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2020.604585

Inference of Intercellular Communications and Multilayer Gene-Regulations of Epithelial–Mesenchymal Transition From Single-Cell Transcriptomic Data
Cited by: 15
Author(s): Yutong Sha, Shuxiong Wang, Federico Bocci, Peijie Zhou, Qing Nie
Software Mentions: 3
Published: over 5 years ago

10.3389/fcimb.2018.00079

Ecological Restoration of Antibiotic-Disturbed Gastrointestinal Microbiota in Foregut and Hindgut of Cows
Cited by: 25
Author(s): Shoukun Ji, Tao Jiang, Hui Yan, Changhong Guo, Jingjing Liu, Huawei Su, Gibson Maswayi Alugongo, Haitao Shi, Yajing Wang, Zhijun Cao, Shengli Li
Software Mentions: 3
Published: over 8 years ago

10.3389/fcimb.2014.00062

To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
Cited by: 20
Author(s): Elise Vaumourin, GwenaÃ«l Vourc'h, Sandra Telfer, Xavier Lambin, Diaeldin A. Salih, Ulrike Seitzer, Serge Morand, Nathalie Charbonnel, Muriel Vayssier‐Taussat, Patrick Gasqui
Software Mentions: 3
Published: over 12 years ago

10.7554/eLife.13125

Sequential phenotypic constraints on social information use in wild baboons
Cited by: 35
Author(s): Alecia J. Carter, Miquel Torrents-Ticó, Guy Cowlishaw
Software Mentions: 3
Published: over 10 years ago

10.3389/fcimb.2019.00254

Probiotic Supplementation During Human Pregnancy Affects the Gut Microbiota and Immune Status
Cited by: 19
Author(s): Yuyi Chen, Zhe Li, Kian Deng Tye, Huijuan Luo, Xiaomei Tang, Yu-Chieh Liao, Dongju Wang, Juan Zhou, Ping Yang, Yimi Li, Yingbing Su, Xiaomin Xiao
Software Mentions: 3
Published: about 7 years ago

10.3389/fcell.2021.703489

Reconstruction of the Cytokine Signaling in Lysosomal Storage Diseases by Literature Mining and Network Analysis
Cited by: 3
Author(s): Silvia Parolo, Danilo Tomasoni, Pranami Bora, Alan Ramponi, Chanchala Kaddi, Karim Azer, Enrico Domenici, Susana Neves-Zaph, Rosario Lombardo
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.62365

A large accessory protein interactome is rewired across environments
Cited by: 23
Author(s): Zhimin Liu, Darach Miller, Fangfei Li, Xianan Liu, Sasha F. Levy
Software Mentions: 3
Published: about 6 years ago

10.3389/fbioe.2018.00121

Metabolite-Centric Reporter Pathway and Tripartite Network Analysis of Arabidopsis Under Cold Stress
Cited by: 15
Author(s): İbrahim Koç, İsa Öner Yüksel, Gustavo Caetano‐Anollés
Software Mentions: 3
Published: about 8 years ago

10.12688/f1000research.2-130.v3

An a posteriori measure of network modularity
Cited by: 5
Author(s): Timothée Poisot
Software Mentions: 3
Published: over 12 years ago

10.1111/eva.12138

Inferring influenza global transmission networks without complete phylogenetic information
Cited by: 4
Author(s): Stéphane Aris‐Brosou
Software Mentions: 3
Published: over 12 years ago

10.3390/ijms21093171

DRUGPATH: The Drug Gene Pathway Meta-Database
Cited by: 3
Author(s): Rajeev Jaundoo, Travis J. A. Craddock
Software Mentions: 3
Published: over 6 years ago

10.1155/2020/2948292

Commonality and Specificity of Acupuncture Point Selections
Cited by: 15
Author(s): Ye-Seul Lee, Yeonhee Ryu, Da-Eun Yoon, Cheol-Han Kim, Geesoo Hong, Ye-Chae Hwang, Younbyoung Chae
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms22020953

Steroidal Regulation of Oviductal microRNAs Is Associated with microRNA-Processing in Beef Cows
Cited by: 9
Author(s): Ángela María Gonella-Diaza, E. A. Lopes, Kauê Ribeiro da Silva, Ricardo Perecin Nociti, Gabriella Mamede Andrade, Jorge Eduardo Atuesta-Bustos, Juliano Coelho da Silveira, Flávio Vieira Meirelles, Mário Binelli
Software Mentions: 3
Published: over 5 years ago

10.1186/s40001-021-00586-8

NR4A3 and CCL20 clusters dominate the genetic networks in CD146+ blood cells during acute myocardial infarction in humans
Cited by: 3
Author(s): Yanhui Wang, Chen-Xin Li, Jessica M. Stephenson, Sean P. Marrelli, Yanming Kou, Dong Meng, Ting Wu
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms22105056

Cross-Predicting Essential Genes between Two Model Eukaryotic Species Using Machine Learning
Cited by: 6
Author(s): Túlio de Lima Campos, Pasi K. Korhonen, Neil D. Young
Software Mentions: 3
Published: over 5 years ago

10.1017/S0950268820002654

Drawing transmission graphs for COVID-19 in the perspective of network science
Cited by: 4
Author(s): Necmi Gürsakal, Bülent Batmaz, Gamze Aktuna
Software Mentions: 3
Published: over 6 years ago

10.1038/srep42638

FocusHeuristics – expression-data-driven network optimization and disease gene prediction
Cited by: 16
Author(s): Markus Ernst, Yang Du, Gregor Warsow, Mohamed Hamed, Nicole Endlich, Karlhans Endlich, Hugo Murua Escobar, Lisa-Madeleine Sklarz, Sina Sender, Christian Junghanß, Steffen Möller, Georg Fuellen, Stephan Struckmann
Software Mentions: 3
Published: over 9 years ago

10.1038/srep45823

Natural Scales in Geographical Patterns
Cited by: 11
Author(s): Telmo Menezes, Camille Roth
Software Mentions: 3
Published: over 9 years ago

10.1002/ece3.5024

Availability of food resources and habitat structure shape the individual‐resource network of a Neotropical marsupial
Cited by: 15
Author(s): Nícholas F. de Camargo, Hernani Oliveira, Juliana Fernandes Ribeiro, A. J. A. de Camargo, Emerson M. Vieira
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-03778-7

Ecological diversity and co-occurrence patterns of bacterial community through soil profile in response to long-term switchgrass cultivation
Cited by: 41
Author(s): Shenggen He, Lixiang Guo, Mengying Niu, Fuhong Miao, Shuo Jiao, Tianming Hu, M. I. E. Long
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-06773-0

Linking the morphological and metabolomic response of Lactuca sativa L exposed to emerging contaminants using GC × GC-MS and chemometric tools
Cited by: 50
Author(s): Carlos Hurtado, Hadi Parastar, Víctor Matamoros, Benjamı́n Piña, Romà Tauler, Josep M. Bayona
Software Mentions: 3
Published: about 9 years ago

10.1038/srep28429

Exploring pig trade patterns to inform the design of risk-based disease surveillance and control strategies
Cited by: 38
Author(s): Claire Guinat, Anne A. Relun, Ben Wall, Aaron L. Morris, Lucas Dixon, Dirk U. Pfeiffer
Software Mentions: 3
Published: about 10 years ago

Projects: cran: igraph

Science Score: 100/100

Bonuses:

Papers Mentioning igraph 1,555