10.1186/s13099-019-0312-y

Differential genetic and functional background in inflammatory bowel disease phenotypes of a Greek population: a systems bioinformatics approach
Cited by: 11
Author(s): Maria Gazouli, Nikolas Dovrolis, André Franke, George M. Spyrou, Leonardo Antonio Sechi, George Kolios
Software Mentions: 5
Published: over 7 years ago

10.3389/fgene.2021.706854

Crosslink: An R Package for Network Visualization of Grouped Nodes
Cited by: 1
Author(s): Di Liu, Zhijie Bai, Bing Liu, Zongcheng Li
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.5691

Metabolically similar cohorts of bacteria exhibit strong cooccurrence patterns with diet items and eukaryotic microbes in lizard guts
Cited by: 7
Author(s): Iris Holmes, Ivan V. Monagan, Daniel L. Rabosky, Alison R. Davis Rabosky
Software Mentions: 5
Published: almost 7 years ago

10.1007/s11111-019-00329-2

Missing millions: undercounting urbanization in India
Cited by: 17
Author(s): Kyle Onda, Parmanand Sinha, Andrea E. Gaughan, Forrest R. Stevens, Nikhil Kaza
Software Mentions: 5
Published: almost 7 years ago

10.1111/tpj.14202

Gene networks orchestrated by <i>Me<scp>GI</scp></i>: a single‐factor mechanism underlying sex determination in persimmon
Cited by: 43
Author(s): Ho Wen Yang, Takashi Akagi, Taiji Kawakatsu, Ryutaro Tao
Software Mentions: 5
Published: over 7 years ago

10.3390/ani10081321

Social Experience of Captive Livingstone’s Fruit Bats (Pteropus livingstonii)
Cited by: 7
Author(s): Morgan J. Welch, Teresa M. Smith, Charlotte A. Hosie, Dominic Wormell, Eluned C. Price, Christina R. Stanley
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2016.01637

Response of Core Microbial Consortia to Chronic Hydrocarbon Contaminations in Coastal Sediment Habitats
Cited by: 60
Author(s): Mathilde Jeanbille, Jérôme Gury, Robert Duran, Jacek Tronczyński, Hélène Agogué, Olfa Ben Saïd, Jean-François Ghiglione, Jean‐Christophe Auguet
Software Mentions: 5
Published: about 10 years ago

10.1038/srep28730

Dispersal similarly shapes both population genetics and community patterns in the marine realm
Cited by: 41
Author(s): Guillem Chust, Ernesto Villarino, Anne Chenuil, Xabier Irigoien, Nihayet Bizsel, Antonio Bode, Cecilie Broms, S. Claus, María Luz Fernández de Puelles, S. Fonda-Umani, Galice Hoarau, Maria Grazia Mazzocchi, Patricija Mozetič, L. Vandepitte, Helena Veríssimo, Soultana Zervoudaki, Ángel Borja
Software Mentions: 5
Published: over 10 years ago

10.7554/eLife.52696

Highly regulated, diversifying NTP-dependent biological conflict systems with implications for the emergence of multicellularity
Cited by: 24
Author(s): Gurmeet Kaur, A. Maxwell Burroughs, Lakshminarayan M. Iyer, L. Aravind
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0195070

Bayesian variable selection with graphical structure learning: Applications in integrative genomics
Cited by: 7
Author(s): Suprateek Kundu, Yu‐Shan Cheng, Minsuk Shin, Ganiraju C. Manyam, Bani K. Mallick, Veerabhadran Baladandayuthapani
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0151342

Mining Social Entrepreneurship Strategies Using Topic Modeling
Cited by: 23
Author(s): Yanto Chandra, Li Jiang, Chengjun Wang
Software Mentions: 5
Published: over 10 years ago

10.3389/fpsyg.2018.01742

Visualizing Psychological Networks: A Tutorial in R
Cited by: 117
Author(s): Payton J. Jones, Patrick Mair, Richard J. McNally
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2017.01516

Long-term Fertilization Structures Bacterial and Archaeal Communities along Soil Depth Gradient in a Paddy Soil
Cited by: 68
Author(s): Yunfu Gu, Yingyan Wang, Liangang Shen, Quanju Xiang, Xiumei Yu, Ke Zhao, Likou Zou, Qiang Chen, Shuangshuang Tu, Xiaoping Zhang
Software Mentions: 5
Published: about 9 years ago

10.1038/s42003-020-0914-4

Birds have peramorphic skulls, too: anatomical network analyses reveal oppositional heterochronies in avian skull evolution
Cited by: 29
Author(s): Olivia Plateau, Christian Foth
Software Mentions: 5
Published: over 6 years ago

10.3390/jpm11080785

Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map
Cited by: 10
Author(s): Quentin Miagoux, Vidisha Singh, Dereck de Mézquita, Valérie Chaudru, Mohamed Elati, Élisabeth Petit-Teixeira, Anna Niarakis
Software Mentions: 5
Published: about 5 years ago

10.7554/eLife.70394

Bacterial death and TRADD-N domains help define novel apoptosis and immunity mechanisms shared by prokaryotes and metazoans
Cited by: 14
Author(s): Gurmeet Kaur, Lakshminarayan M. Iyer, A. Maxwell Burroughs, L. Aravind
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-47087-7

Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms
Cited by: 6
Author(s): Juan Carlos Gómez-Verján, Ricardo Ramírez‐Aldana, Mario Ulises Pérez‐Zepeda, Ricardo Quiroz‐Baez, Armando Luna–López, Luis Miguel Gutiérrez Robledo
Software Mentions: 5
Published: about 7 years ago

10.3389/fphar.2020.599760

Modulation of the Gut Microbiota and Liver Transcriptome by Red Yeast Rice and Monascus Pigment Fermented by Purple Monascus SHM1105 in Rats Fed with a High-Fat Diet
Cited by: 10
Author(s): Hua Yang, Ronghua Pan, Jing Wang, Lizhong Zheng, Zhenjing Li, Qingbin Guo, Changlu Wang
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2018.01128

Sediment Depth-Dependent Spatial Variations of Bacterial Communities in Mud Deposits of the Eastern China Marginal Seas
Cited by: 23
Author(s): Yanlu Qiao, Jiwen Liu, Meixun Zhao, Xiaohua Zhang
Software Mentions: 5
Published: over 8 years ago

10.3389/fonc.2021.686044

A Novel Prognostic Model Based on Ferroptosis-Related Gene Signature for Bladder Cancer
Cited by: 27
Author(s): Libo Yang, Chunyan Li, Yang Qin, Guoying Zhang, Bin Zhao, Ziyuan Wang, Yang H. Huang, Yong Yang
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0183144

Environmental disturbance increases social connectivity in a passerine bird
Cited by: 22
Author(s): Samantha M. Lantz, Jordan Karubian
Software Mentions: 5
Published: about 9 years ago

10.1038/s41598-018-33276-3

Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
Cited by: 5
Author(s): Laura Bennett, Mary Howell, Danish Memon, Chris Smowton, Cong Zhou, Crispin Miller
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-018-26484-4

Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo
Cited by: 11
Author(s): David W. Waite, Melissa Dsouza, Yuji Sekiguchi, Philip Hugenholtz, Michael W. Taylor
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-019-52177-7

Dominance relationships and coalitionary aggression against conspecifics in female carrion crows
Cited by: 11
Author(s): Benedikt Holtmann, Julia Buskas, Matthew Steele, Kristaps Solokovskis, Jochen B. W. Wolf
Software Mentions: 5
Published: almost 7 years ago

10.3389/fpubh.2021.590038

Network Analysis to Identify Communities Among Multiple Exposure Biomarkers Measured at Birth in Three Flemish General Population Samples
Cited by: 13
Author(s): Ilse Ottenbros, Eva Govarts, Erik Lebret, Roel Vermeulen, Greet Schoeters, Jelle Vlaanderen
Software Mentions: 5
Published: over 5 years ago

10.1038/srep37646

Exploring the molecular basis of age-related disease comorbidities using a multi-omics graphical model
Cited by: 45
Author(s): Jonas Zierer, Tess Pallister, Pei-Chien Tsai, Jan Krumsiek, Jordana T. Bell, Gordan Lauc, Tim D. Spector, Cristina Menni, Gabi Kastenmüller
Software Mentions: 5
Published: almost 10 years ago

10.1038/s41598-018-21874-0

Degradation shaped bacterial and archaeal communities with predictable taxa and their association patterns in Zoige wetland at Tibet plateau
Cited by: 40
Author(s): Yunfu Gu, Yan Bai, Quanju Xiang, Xiumei Yu, Ke Zhao, Xiaoping Zhang, Chaonan Li, Songqin Liu, Qiang Chen
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-21988-5

Continental-scale animal tracking reveals functional movement classes across marine taxa
Cited by: 39
Author(s): Stephanie Brodie, Elodie J. I. Lédée, Michelle R. Heupel, Russell C. Babcock, Hamish A. Campbell, Daniel C. Gledhill, Xavier Hoenner, Charlie Huveneers, Fabrice R. A. Jaine, Colin A. Simpfendorfer, Matthew D. Taylor, Vinay Udyawer, Robert Harcourt
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-21118-1

The utility of a network–based clustering method for dimension reduction of imaging and non-imaging biomarkers predictive of Alzheimer’s disease
Cited by: 2
Author(s): Haruhiko Yoshida, Atsushı Kawaguchi, Fumio Yamashita, Kazuhiko Tsuruya
Software Mentions: 5
Published: over 8 years ago

10.1016/j.devcel.2020.11.013

Diverse Routes toward Early Somites in the Mouse Embryo
Cited by: 40
Author(s): Carolina Guibentif, J. B. Griffiths, Iván Imaz-Rosshandler, Shila Ghazanfar, Jennifer Nichols, Valerie Wilson, Berthold Göttgens, John C. Marioni
Software Mentions: 5
Published: almost 6 years ago

10.3390/ijerph18041505

The Role of Societal Aspects in the Formation of Official COVID-19 Reports: A Data-Driven Analysis
Cited by: 5
Author(s): Marcell T. Kurbucz, Attila Imre Katona, Zoltán Lantos, Zsolt Tibor Kosztyán
Software Mentions: 5
Published: over 5 years ago

10.1038/srep37473

Hydrocarbon degraders establish at the costs of microbial richness, abundance and keystone taxa after crude oil contamination in permafrost environments
Cited by: 55
Author(s): Shuai Yang, Wen Xi, Yulan Shi, Susanne Liebner, Huijun Jin, Amedea Perfumo
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0182850

Quantitative approach for the risk assessment of African swine fever and Classical swine fever introduction into the United States through legal imports of pigs and swine products
Cited by: 37
Author(s): Diana María Herrera-Ibatá, Beatriz Martínez‐López, Darla Quijada, Kenneth R. Burton, Lina Mur
Software Mentions: 5
Published: about 9 years ago

10.1111/rssb.12233

Sparse Graphs Using Exchangeable Random Measures
Cited by: 165
Author(s): François Caron, Emily B. Fox
Software Mentions: 5
Published: about 9 years ago

10.1007/s43926-021-00016-5

Social media analytics of the Internet of Things
Cited by: 4
Author(s): Jim Scheibmeir, Yashwant K. Malaiya
Software Mentions: 5
Published: over 5 years ago

10.3390/ijerph18073370

The Academic Landscapes of Manufacturing Enterprise Performance and Environmental Sustainability: A Study of Commonalities and Differences
Cited by: 7
Author(s): Cristian Mejía, Yuya Kajikawa
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0134509

A Social Network Approach Reveals Associations between Mouse Social Dominance and Brain Gene Expression
Cited by: 103
Author(s): Nina L. T. So, Becca Franks, Sean C. Lim, James P. Curley
Software Mentions: 5
Published: about 11 years ago

10.1038/srep29647

Tracking Cancer Genetic Evolution using OncoTrack
Cited by: 4
Author(s): Asoke K. Talukder, Mahima Agarwal, Kenneth H. Buetow, Patrice Denèfle
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0044514

Bipartite Graphs as Models of Population Structures in Evolutionary Multiplayer Games
Cited by: 28
Author(s): Jorge Peña, Yannick Rochat
Software Mentions: 5
Published: about 14 years ago

10.3389/fonc.2021.633950

Identification of a Novel Glycolysis-Related Gene Signature Correlates With the Prognosis and Therapeutic Responses in Patients With Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Zhengtong Lv, Qi Lin, Xiheng Hu, Miao Mo, Huichuan Jiang, Yuan Li
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-40910-1

Phosphorus source driving the soil microbial interactions and improving sugarcane development
Cited by: 25
Author(s): Thiago Gumière, Alain N. Rousseau, Diogo Paes da Costa, Alice de Souza Cassetari, Simone Raposo Cotta, Fernando Dini Andreote, Silvio José Gumière, Paulo Sérgio Pavinato
Software Mentions: 5
Published: over 7 years ago

10.3389/fnins.2019.00211

Brain Connectivity and Information-Flow Breakdown Revealed by a Minimum Spanning Tree-Based Analysis of MRI Data in Behavioral Variant Frontotemporal Dementia
Cited by: 26
Author(s): Valentina Saba, Enrico Premi, Viviana Cristillo, Stefano Gazzina, Fernando Palluzzi, Orazio Zanetti, Roberto Gasparotti, Alessandro Padovani, Barbara Borroni, Mario Grassi
Software Mentions: 5
Published: over 7 years ago

10.1016/j.isci.2021.103048

Post-weaning A1/A2 β-casein milk intake modulates depressive-like behavior, brain μ-opioid receptors, and the metabolome of rats
Cited by: 5
Author(s): Aya Osman, Simone Zuffa, Gemma Walton, Elizabeth Fagbodun, Panos Zanos, Polymnia Georgiou, Ian Kitchen, Jonathan R. Swann, Alexis Bailey
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2020.603692

Shift and Metabolic Potentials of Microbial Eukaryotic Communities Across the Full Depths of the Mariana Trench
Cited by: 3
Author(s): Xiaoyu Zhu, Jiwen Liu, Chun-Xu Xue, Jiwei Tian, Xiao‐Hua Zhang
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12967-020-02560-0

Cytokine profiling of extracellular vesicles isolated from plasma in myalgic encephalomyelitis/chronic fatigue syndrome: a pilot study
Cited by: 16
Author(s): Ludovic Giloteaux, Adam J. O’Neal, Jesús Castro-Marrero, Susan Levine, Maureen R. Hanson
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0223745

Measuring the complexity of directed graphs: A polynomial-based approach
Cited by: 7
Author(s): Matthias Dehmer, Zengqiang Chen, Frank Emmert‐Streib, Shailesh Tripathi, Abbe Mowshowitz, Alexei Leviţchi, Lihua Feng, Yongtang Shi, Tao Jin
Software Mentions: 5
Published: almost 7 years ago

10.1038/srep10361

Interactions between tick and transmitted pathogens evolved to minimise competition through nested and coherent networks
Cited by: 57
Author(s): Agustı́n Estrada-Peña, José de la Fuente, Richard S. Ostfeld, Alejandro Cabezas-Cruz
Software Mentions: 5
Published: over 11 years ago

10.3389/fmicb.2019.03138

Rare Species Shift the Structure of Bacterial Communities Across Sphagnum Compartments in a Subalpine Peatland
Cited by: 13
Author(s): Wen Tian, Xiang Xiao, Liyuan Ma, Stephanie Evers, Ruicheng Wang, Xuan Qiu, Hongmei Wang
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.27014

Regulation of life span by the gut microbiota in the short-lived African turquoise killifish
Cited by: 262
Author(s): Patrick M. Smith, David Willemsen, Miriam Popkes, Franziska Metge, Edson Gandiwa, Martin Reichard, Dario Riccardo Valenzano
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0057190

The Poultry-Associated Microbiome: Network Analysis and Farm-to-Fork Characterizations
Cited by: 103
Author(s): Brian B. Oakley, Cesar A. Morales, J. Eric Line, M. E. Berrang, Richard J. Meinersmann, Glenn E. Tillman, Mark G. Wise, Gregory R. Siragusa, Kelli L. Hiett, Bruce S. Seal
Software Mentions: 5
Published: over 13 years ago

10.1038/s41598-019-43268-6

Structure and stability of the coral microbiome in space and time
Cited by: 60
Author(s): Courtney M. Dunphy, Tarik C. Gouhier, Nathaniel D. Chu, Steven V. Vollmer
Software Mentions: 5
Published: over 7 years ago

10.7554/eLife.49424

Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei
Cited by: 164
Author(s): Jing Ren, Alina Isakova, Drew Friedmann, Jiawei Zeng, Sophie M. Grutzner, Albert Pun, Grace Zhao, Sai Saroja Kolluru, Ruiyu Wang, Rui Lin, Pengcheng Li, Anan Li, Jennifer L. Raymond, Qi Luo, Minmin Luo, Stephen R. Quake, Liqun Luo
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0148459

Assessment of Overlap of Phylogenetic Transmission Clusters and Communities in Simple Sexual Contact Networks: Applications to HIV-1
Cited by: 28
Author(s): Luc Villandré, David A. Stephens, Aurélie Labbe, Huldrych F. Günthard, Roger D. Kouyos, Tanja Stadler
Software Mentions: 5
Published: over 10 years ago

10.7554/eLife.37816

Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity
Cited by: 65
Author(s): Xue Song Zhang, Jackie Li, Kimberly A. Krautkramer, Michelle Badri, Thomas Battaglia, Timothy C. Borbet, Hyunwook Koh, Sandy Ng, Rachel A Sibley, Yuanyuan Li, Wimal Pathmasiri, Jindal Sk, Robin R. Shields-Cutler, Ben Hillmann, Gabriel A. Al‐Ghalith, Victoria Ruiz, Alexandra E. Livanos, Angélique B. van’t Wout, Nabeetha A. Nagalingam, Arlin B. Rogers, Susan Sumner, Dan Knights, John M. Denu, Huilin Li, Kelly V. Ruggles, Richard Bonneau, R. Anthony Williamson, Marcus Rauch, Martin J. Blaser
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0245409

Social survival: Humpback whales (Megaptera novaeangliae) use social structure to partition ecological niches within proposed critical habitat
Cited by: 3
Author(s): Janie Wray, Eric M. Keen, Éadin O’Mahony
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0115092

Mapping Interdisciplinary Fields: Efficiencies, Gaps and Redundancies in HIV/AIDS Research
Cited by: 23
Author(s): Jeffrey M. Adams, Ryan Light
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0255323

Gut microbiota alterations in response to sleep length among African-origin adults
Cited by: 13
Author(s): Na Fei, Candice Choo-Kang, Sirimon Reutrakul, Stephanie J. Crowley, Dale E. Rae, Kweku Bedu-Addo, Jacob Plange‐Rhule, Terrence Forrester, Estelle V. Lambert, Pascal Bovet, Walter Riesen, Wolfgang Korte, Amy Luke, Brian T. Layden, Jack A. Gilbert, Lara R. Dugas
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0084642

Predicting the Vulnerability of Great Apes to Disease: The Role of Superspreaders and Their Potential Vaccination
Cited by: 19
Author(s): Charlotte Carne, Stuart Semple, Helen C. Morrogh‐Bernard, Klaus Zuberbühler, Julia Lehmann
Software Mentions: 4
Published: almost 13 years ago

10.1371/journal.pone.0140577

How Many Parasites Species a Frog Might Have? Determinants of Parasite Diversity in South American Anurans
Cited by: 47
Author(s): Karla Magalhães Campião, Augusto Cesar de Aquino Ribas, Drausio Honório Morais, Reinaldo José da Silva, Luiz Eduardo Roland Tavares
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0102188

Large-Scale Structure of a Network of Co-Occurring MeSH Terms: Statistical Analysis of Macroscopic Properties
Cited by: 21
Author(s): Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0208720

Modular structure in fish co-occurrence networks: A comparison across spatial scales and grouping methodologies
Cited by: 9
Author(s): Daniel J. McGarvey, Joseph A. Veech
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0231837

Effects of user behaviors on accumulation of social capital in an online social network
Cited by: 10
Author(s): Yuri Germanovich Rykov, Olessia Koltsova, Yadviga Sinyavskaya
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0214868

Reconstruction and inference of the Lactococcus lactis MG1363 gene co-expression network
Cited by: 5
Author(s): Jimmy Omony, Anne de Jong, Jan Kok, Sacha A. F. T. van Hijum
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0170293

Recent Themes in Social Networking Service Research
Cited by: 20
Author(s): John S. Liu, Mei Hsiu–Ching Ho, Louis Y. Y. Lu
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0197883

The regulatory ancestral network of surgical meshes
Cited by: 21
Author(s): Nasim Zargar, Andrew Carr
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0235690

Heatmap centrality: A new measure to identify super-spreader nodes in scale-free networks
Cited by: 10
Author(s): Christina Durón
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0019350

Deep Sequencing of Organ- and Stage-Specific microRNAs in the Evolutionarily Basal Insect Blattella germanica (L.) (Dictyoptera, Blattellidae)
Cited by: 82
Author(s): Alexandre S. Cristino, Erica D. Tanaka, Mercedes Rubio, María‐Dolors Piulachs, Xavier Bellés
Software Mentions: 4
Published: over 15 years ago

10.1371/journal.pone.0256956

Exploring the topology and dynamic growth properties of co-invention networks and technology fields
Cited by: 2
Author(s): Pablo E. Pinto, Guillermo Honores, Andrés Vallone
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers13040851

Network Analysis Identifies Drug Targets and Small Molecules to Modulate Apoptosis Resistant Cancers
Cited by: 6
Author(s): Samreen Fathima, Swati Sinha, Sainitin Donakonda
Software Mentions: 4
Published: over 5 years ago

10.1016/j.celrep.2020.107928

Diversification of DNA-Binding Specificity by Permissive and Specificity-Switching Mutations in the ParB/Noc Protein Family
Cited by: 17
Author(s): Adam S. B. Jalal, Ngat T. Tran, Clare E. M. Stevenson, Elliot W. Chan, Rebecca Lo, Xiao Tan, Agnes Noy, David M. Lawson, Tung B. K. Le
Software Mentions: 4
Published: over 6 years ago

10.1038/s42003-020-01636-3

Single-cell transcriptomics following ischemic injury identifies a role for B2M in cardiac repair
Cited by: 39
Author(s): Bas Molenaar, Louk T. Timmer, Marjolein Droog, Ilaria Perini, Daniëlle Versteeg, Lieneke Kooijman, Jantine Monshouwer-Kloots, Hesther de Ruiter, Monika M Gladka, Eva van Rooij
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-02210-1

The power and promise of genetic mapping from Plasmodium falciparum crosses utilizing human liver-chimeric mice
Cited by: 10
Author(s): Katrina A. Button-Simons, Sudhir Kumar, Nelly Carmago, Haile, Catherine Jett, Lisa A. Checkley, Spencer Y. Kennedy, Richard S. Pinapati, Douglas A. Shoue, Marina McDew-White, X Li, François Nosten, Stefan H. I. Kappe, Jeanne Romero‐Severson, Ferdig, Scott J. Emrich, Ashley M. Vaughan, Ian H. Cheeseman
Software Mentions: 4
Published: over 5 years ago

10.1016/j.csbj.2017.01.001

Detection of Side Chain Rearrangements Mediating the Motions of Transmembrane Helices in Molecular Dynamics Simulations of G Protein-Coupled Receptors
Cited by: 14
Author(s): Zied Gaieb, Dimitrios Morikis
Software Mentions: 4
Published: almost 10 years ago

10.1155/2019/5058313

Transcriptome Analysis of Hypertrophic Heart Tissues from Murine Transverse Aortic Constriction and Human Aortic Stenosis Reveals Key Genes and Transcription Factors Involved in Cardiac Remodeling Induced by Mechanical Stress
Cited by: 7
Author(s): Peng Yu, Baoli Zhang, Ming Liu, Ying Yu, Jian Zhao, Chunyu Zhang, Yana Li, Lei Zhang, Xue Yang, Hong Jiang, Yunzeng Zou, Junbo Ge
Software Mentions: 4
Published: almost 7 years ago

10.1007/s10393-017-1284-3

Implications of Tourist–Macaque Interactions for Disease Transmission
Cited by: 28
Author(s): Charlotte Carne, Stuart Semple, Ann MacLarnon, Bonaventura Majolo, Laëtitia Maréchal
Software Mentions: 4
Published: almost 9 years ago

10.1002/ece3.5453

Sea surface temperature dictates movement and habitat connectivity of Atlantic cod in a coastal fjord system
Cited by: 13
Author(s): Thomas A. B. Staveley, David Jacoby, Diana Perry, Felix van der Meijs, Ingvar Lagenfelt, Mikael Cremle, Martin Gullström
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2020.580363

Compositions and Co-occurrence Patterns of Bacterial Communities Associated With Polymer- and ASP-Flooded Petroleum Reservoir Blocks
Cited by: 6
Author(s): Guoling Ren, Jinlong Wang, Lei Qu, Wei Li, Min Hu, Lihong Bian, Yiting Zhang, Jing Liu, Xumou Dou, Xinhong Chen, Lulu Bai, Yue Li
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.657471

Comparative Genomics and Environmental Distribution of Large dsDNA Viruses in the Family Asfarviridae
Cited by: 15
Author(s): Sangita Karki, Mohammad Moniruzzaman, Frank O. Aylward
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.726923

Genome-Resolved Metagenomics of the Chicken Gut Microbiome
Cited by: 25
Author(s): Maia Segura-Wang, Nikolaus Grabner, Andreas Koestelbauer, Viviana Klose, Mahdi Ghanbari
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2018.02922

Occurrence and Fate of Ultramicrobacteria in a Full-Scale Drinking Water Treatment Plant
Cited by: 8
Author(s): Jie Liu, Renxin Zhao, Jiayu Zhang, Guijuan Zhang, Ke Yu, Xiaoyan Li, Bing Li
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2019.01015

Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere
Cited by: 48
Author(s): Xin Qian, Hanzhou Li, Yong-Long Wang, Bian Wu, Mingsong Wu, Liang Chen, Xingchun Li, Ying Zhang, Xiangping Wang, Miaomiao Shi, Yong Zheng, Liang‐Dong Guo, Dianxiang Zhang
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2016.00434

Restructuring of Epibacterial Communities on Fucus vesiculosus forma mytili in Response to Elevated pCO2 and Increased Temperature Levels
Cited by: 26
Author(s): Birte Mensch, Sven C. Neulinger, Angelika Graiff, Andreas Pansch, Sven Künzel, Martin Fischer, Ruth A. Schmitz
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2020.576661

Distinct Distribution of Archaea From Soil to Freshwater to Estuary: Implications of Archaeal Composition and Function in Different Environments
Cited by: 14
Author(s): Hualong Wang, Raven L. Bier, Laura Zgleszewski, Marc Peipoch, Emmanuel C. Omondi, Atanu Mukherjee, Feng Chen, Chuanlun Zhang, Jinjun Kan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2017.00991

Multigenerational Influences of the Fut2 Gene on the Dynamics of the Gut Microbiota in Mice
Cited by: 16
Author(s): Philipp Rausch, Sven Künzel, Abdulhadi Suwandi, Guntram A. Grassl, Philip Rosenstiel, John F. Baines
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2019.01407

Predominance of Cand. Patescibacteria in Groundwater Is Caused by Their Preferential Mobilization From Soils and Flourishing Under Oligotrophic Conditions
Cited by: 143
Author(s): Martina Herrmann, Carl‐Eric Wegner, Martin Taubert, Patricia Geesink, Katharina Lehmann, Lijuan Yan, Robert Lehmann, Kai Uwe Totsche, Kirsten Küsel
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2020.607396

Distinct Microbial Communities in Adjacent Rock and Soil Substrates on a High Arctic Polar Desert
Cited by: 16
Author(s): Yong‐Hoe Choe, Min‐Cheol Kim, Yoo Kyung Lee
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.575207

Fungal Communities in Sediments Along a Depth Gradient in the Eastern Tropical Pacific
Cited by: 9
Author(s): Keilor Rojas‐Jimenez, Hans‐Peter Grossart, Erik E. Cordes, Jorge Cortés
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.526898

Seasonal Changes in Pinus tabuliformis Root-Associated Fungal Microbiota Drive N and P Cycling in Terrestrial Ecosystem
Cited by: 12
Author(s): Haihua Wang, Honglong Chu, Qing Dou, Huijin Feng, Ming Tang, Shuoxin Zhang, Chunyan Wang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.579290

Spatiotemporal Patterns in Diversity and Assembly Process of Marine Protist Communities of the Changjiang (Yangtze River) Plume and Its Adjacent Waters
Cited by: 8
Author(s): Xin Guo, Lianghuan Wu, Lingfeng Huang
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2016.01688

Systems Biomedicine of Rabies Delineates the Affected Signaling Pathways
Cited by: 19
Author(s): Sadegh Azimzadeh Jamalkandi, Sayed‐Hamidreza Mozhgani, Hamid Gholami Pourbadie, Mehdi Mirzaie, Farshid Noorbakhsh, Behrouz Vaziri, Alireza Gholami, Naser Ansari-Pour, Mohieddin Jafari
Software Mentions: 4
Published: almost 10 years ago

10.3389/fmicb.2018.01201

Microbial Community Structure and Associations During a Marine Dinoflagellate Bloom
Cited by: 93
Author(s): Jin Zhou, Mindy L. Richlen, Taylor R. Sehein, David M. Kulis, Donald M. Anderson, Zhonghua Cai
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2019.00708

Antimicrobial Resistance Diversity Suggestive of Distinct Salmonella Typhimurium Sources or Selective Pressures in Food-Production Animals
Cited by: 24
Author(s): Kate C. Mellor, Liljana Petrovska, Nicholas R. Thomson, Kate Harris, S. Reid, Alison E. Mather
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2020.491425

Stream Microbial Community Structured by Trace Elements, Headwater Dispersal, and Large Reservoirs in Sub-Alpine and Urban Ecosystems
Cited by: 5
Author(s): Erin Jones, Natasha A. Griffin, Julia E. Kelso, Gregory T. Carling, Michelle A. Baker, Zachary T. Aanderud
Software Mentions: 4
Published: almost 6 years ago

10.3389/fneur.2020.00773

Computer Modeling of Clot Retrieval—Circle of Willis
Cited by: 6
Author(s): Thanh G. Phan, Henry Ma, Mayank Goyal, James Hilton, Matthew D. Sinnott, Velandai Srikanth, Richard Beare
Software Mentions: 4
Published: about 6 years ago

10.3389/fphar.2019.00109

A Comparative Study of Cluster Detection Algorithms in Protein–Protein Interaction for Drug Target Discovery and Drug Repurposing
Cited by: 23
Author(s): Ma Jun, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Benjamin Haibe‐Kains, Peng Dai
Software Mentions: 4
Published: over 7 years ago

10.3389/fphys.2020.00862

Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction
Cited by: 6
Author(s): Barbara Niederdorfer, Vasundra Touré, Miguél Vázquez, Liv Thommesen, Martin Kuiper, Astrid Lægreid, Åsmund Flobak
Software Mentions: 4
Published: about 6 years ago

10.3389/fphys.2020.587994

Metabolic Physiological Networks: The Impact of Age
Cited by: 15
Author(s): Antonio Barajas-Martínez, Jonathan F. Easton, Ana Leonor Rivera, Ricardo Jesús Martínez‐Tapia, Lizbeth de la Cruz, Adriana Robles-Cabrera, Christopher R. Stephens
Software Mentions: 4
Published: about 6 years ago

10.3389/fphys.2021.678507

Sex Differences in the Physiological Network of Healthy Young Subjects
Cited by: 6
Author(s): Antonio Barajas-Martínez, Elizabeth Ibarra-Coronado, Rubén Fossión, J. C. Toledo-Roy, Vania Jocelyn Martínez-Garcés, Juan Antonio López-Rivera, Geraldine Tello-Santoyo, Rusland D Lavin, José Luis Díaz Gómez, Christopher R. Stephens, Carlos A. Aguilar-Salinas, Bruno Estañol, Nimbe Torres, Armando R. Tovar, Osbaldo Reséndis-Antonio, Marcia Hiriart, A. Frank, Ana Leonor Rivera
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2017.01725

Combined Effects of Irrigation Regime, Genotype, and Harvest Stage Determine Tomato Fruit Quality and Aptitude for Processing into Puree
Cited by: 20
Author(s): Alexandre Arbex de Castro Vilas Boas, David L. Page, Robert Giovinazzo, Nadia Bertin, Anne-Laure Fanciullino
Software Mentions: 4
Published: about 9 years ago

10.3389/fpls.2019.01593

Cultivated Olive Diversification at Local and Regional Scales: Evidence From the Genetic Characterization of French Genetic Resources
Cited by: 17
Author(s): Bouchaïb Khadari, Ahmed El Bakkali, Laila Essalouh, Christine Tollon, Christian Pinatel, Guillaume Besnard
Software Mentions: 4
Published: almost 7 years ago