cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/1471-2164-15-230

RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin
Cited by: 41
Author(s): David Secco, Huixia Shou, James Whelan, Oliver Berkowitz
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-017-4425-8

Global identification, structural analysis and expression characterization of cytochrome P450 monooxygenase superfamily in rice
Cited by: 54
Author(s): Kaifa Wei, Huiqin Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-019-54742-6

Molecular response of Deinococcus radiodurans to simulated microgravity explored by proteometabolomic approach
Cited by: 20
Author(s): Emanuel Ott, Felix M. Fuchs, Ralf Moeller, Ruth Hemmersbach, Yuko Kawaguchi, Akihiko Yamagishi, Wolfram Weckwerth, Tetyana Milojevic
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0150266

Biological Characterization of Gene Response to Insulin-Induced Hypoglycemia in Mouse Retina
Cited by: 6
Author(s): Martine Emery, Natacha Nanchen, Frédéric Preitner, Mark Ibberson, Raphaël Roduit
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0036358

Wild Skylarks Seasonally Modulate Energy Budgets but Maintain Energetically Costly Inflammatory Immune Responses throughout the Annual Cycle
Cited by: 65
Author(s): Arne Hegemann, Kevin D. Matson, Maaike A. Versteegh, B. Irene Tieleman
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0182092

Quantitative proteomics in A30P*A53T α-synuclein transgenic mice reveals upregulation of Sel1l
Cited by: 8
Author(s): Jieyu Yan, Pei Zhang, Fengjuan Jiao, Qingzhi Wang, Feng He, Qian Zhang, Zheng Zhang, Ze-Xi Lv, Xiang Peng, Hongwei Cai, Bo Tian
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-019-56396-w

The host generalist phytopathogenic fungus Sclerotinia sclerotiorum differentially expresses multiple metabolic enzymes on two different plant hosts
Cited by: 19
Author(s): Jefferson Allan, Roshan Regmi, Matthew Denton‐Giles, Lars G. Kamphuis, Mark Derbyshire
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-56918-6

Population-specific signatures of intra-individual mitochondrial DNA heteroplasmy and their potential evolutionary advantages
Cited by: 11
Author(s): Yaron Tikochinski, Carlos Carreras, Gili Tikochinski, Sibelle Torres Vilaça
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0063059

Analysis of Nitrification Efficiency and Microbial Community in a Membrane Bioreactor Fed with Low COD/N-Ratio Wastewater
Cited by: 21
Author(s): Jinxing Ma, Zhiwei Wang, Chaowei Zhu, Shumeng Liu, Qiaoying Wang, Zhichao Wu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0037933

Prenatal Famine and Genetic Variation Are Independently and Additively Associated with DNA Methylation at Regulatory Loci within IGF2/H19
Cited by: 131
Author(s): Elmar W. Tobi, P. Eline Slagboom, Jenny van Dongen, Dennis Kremer, Aryeh D. Stein, Hein Putter, Bastiaan T. Heijmans, L. H. Lumey
Software Mentions: 1
Published: over 14 years ago

10.18632/oncotarget.9076

Abundant PD-L1 expression in Epstein-Barr Virus-infected gastric cancers
Cited by: 228
Author(s): Sarah Derks, Xiaoyun Liao, Anna Maria Chiaravalli, Xiayu Xu, M. Constanza Camargo, Enrico Solcia, Fausto Sessa, Tania Fleitas, Gordon J. Freeman, Scott J. Rodig, Charles S. Rabkin, Adam J. Bass
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-018-5423-1

Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach
Cited by: 8
Author(s): Guilherme Campos Tavares, Felipe Luiz Pereira, Gustavo Morais Barony, Cristiana Perdigão Rezende, Wanderson Marques da Silva, Gustavo H. M. F. Souza, Thiago Verano‐Braga, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0189032

Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates
Cited by: 12
Author(s): Bryan K. Cole, Edgar J. Scott, Marko Ilikj, David Bard, Darrin R. Akins, David W. Dyer, Susana Chávez-Bueno
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0171856

The influence of sexual activity on the vaginal microbiota and Gardnerella vaginalis clade diversity in young women
Cited by: 70
Author(s): Lenka A Vodstrcil, Jimmy Twin, Suzanne M. Garland, Christopher K. Fairley, Jane S Hocking, Matthew Law, Erica L Plummer, Katherine Fethers, Eric P F Chow, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-59666-0

Analysis of inflammatory mediators in the vitreous humor of eyes with pan-uveitis according to aetiological classification
Cited by: 20
Author(s): Hisako Fukunaga, Toshikatsu Kaburaki, Shintaro Shirahama, Rie Tanaka, Hiroshi Murata, Tomohito Sato, Masaru Takeuchi, Hideto Tozawa, Yoshihiro Urade, Mari Katsura, Mika Kobayashi, Youichiro Wada, Hirotsugu Soga, Hidetoshi Kawashima, Takahide Kohro, Makoto Aihara
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0198943

Evaluation of phenotypic and functional stability of RAW 264.7 cell line through serial passages
Cited by: 177
Author(s): Bartłomiej Taciak, Maciej Białasek, Agata Braniewska, Zuzanna Sas, Paulina Sawicka, Łukasz Kiraga, Tomasz P. Rygiel, Magdalena Król
Software Mentions: 1
Published: about 8 years ago

10.1111/acel.12379

Atypical antidepressants extend lifespan ofCaenorhabditis elegansby activation of a non‐cell‐autonomous stress response
Cited by: 17
Author(s): Sunitha Rangaraju, Gregory M. Solis, S. Andersson, Rafael L. Gomez‐Amaro, Rozina Kardakaris, Caroline D. Broaddus, Alexander B. Niculescu, Michael Petrascheck
Software Mentions: 1
Published: about 11 years ago

10.1111/jvh.12310

Elevated interferon-stimulated gene transcription in peripheral blood mononuclear cells occurs in patients infected with genotype 1 but not genotype 3 hepatitis C virus
Cited by: 6
Author(s): Mark W. Robinson, Rachael Swann, Alex Sigruener, Stephen T. Barclay, Peter R. Mills, John McLauchlan, Arvind H. Patel
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0160924

Kinase Gene Expression Profiling of Metastatic Clear Cell Renal Cell Carcinoma Tissue Identifies Potential New Therapeutic Targets
Cited by: 17
Author(s): Pooja Ghatalia, Eddy S. Yang, Brittany N. Lasseigne, Ryne C. Ramaker, Sara J. Cooper, Dongquan Chen, Sunil Sudarshan, Wei Shi, Arjun S. Guru, Amy Zhao, Tiffiny S. Cooper, Deborah L. Della Manna, Gurudatta Naik, R Myers, Guru Sonpavde
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0206400

A multi-gene expression profile panel for predicting liver metastasis: An algorithmic approach
Cited by: 4
Author(s): Kanisha Shah, Shanaya Patel, Sheefa Mirza, Rakesh Rawal
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0224211

Skewed T cell responses to Epstein-Barr virus in long-term asymptomatic kidney transplant recipients
Cited by: 4
Author(s): Cecilia Nakid-Cordero, Nadia Arzouk, Nicolas Gauthier, Nadine Tarantino, Martin Larsen, Sylvain Choquet, Sonia Burrel, Brigitte Autran, Vincent Vieillard, Amélie Guihot
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.100961

Metabolic drift in the aging brain
Cited by: 73
Author(s): Julijana Ivanišević, Kelly L. Stauch, Michael Petrascheck, H. Paul Benton, Adrian A. Epstein, Mingliang Fang, Santhi Gorantla, Minerva Tran, Linh Hoang, Michael E. Kurczy, Michael D. Boska, Howard Eliot Gendelman, Howard S. Fox, Gary Siuzdak
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.12909

Hedgehog pathway dysregulation contributes to the pathogenesis of human gastrointestinal stromal tumors via GLI-mediated activation of KIT expression
Cited by: 26
Author(s): Chih Min Tang, Tracy E. Lee, Sabriya A. Syed, Adam M. Burgoyne, Samantha Leonard, Fei Gao, Jonathan C.H. Chan, Eileen Shi, Juliann Chmielecki, Deborah Morosini, Kai Wang, Jeffrey S. Ross, Michael L. Kendrick, Michael R. Bardsley, Martina De Siena, Junhao Mao, Olivier Harismendy, Tamás Ördög, Jason K. Sicklick
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-020-62664-x

Transcriptomic features of tumour-infiltrating CD4lowCD8high double positive αβ T cells in melanoma
Cited by: 14
Author(s): Tiphaine Parrot, Romain Oger, Mathilde Allard, Juliette Desfrançois, Diane Raingeard de la Blétière, Anne Coutolleau, Laurence Preisser, Amir Khammari, Brigitte Dréno, Yves Delneste, Philippe Guardiola, Delphine Fradin, Nadine Gervois
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0137354

Comparative “-omics” in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors
Cited by: 44
Author(s): María Lluch‐Senar, Luca Cozzuto, Jaime Cano, Javier Delgado, Verónica Lloréns‐Rico, Sabine Pereyre, Cécile Bébéar, Luís Serrano
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0182868

Contaminants of emerging concern in tributaries to the Laurentian Great Lakes: I. Patterns of occurrence
Cited by: 79
Author(s): Sarah Elliott, Mark E. Brigham, Kathy E. Lee, Jo A. Banda, Steven J. Choy, Daniel J. Gefell, Thomas Minarik, Joseph Moore, Zachary G. Jorgenson
Software Mentions: 1
Published: almost 9 years ago

10.1128/JVI.00066-20

Characterization and Genomic Analysis of ValSw3-3, a New Siphoviridae Bacteriophage Infecting Vibrio alginolyticus
Cited by: 24
Author(s): Ling Chen, Quan Liu, Fan Jia, Tingwei Yan, Haoran Zhang, Jian Yang, Deng Deng, Chaolan Liu, Ting Wei, Yingfei Ma
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0028175

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype
Cited by: 57
Author(s): Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, L Izzi, Giovanni Camussi, Marco Forni
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0099509

Genomics of Post-Prandial Lipidomic Phenotypes in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) Study
Cited by: 21
Author(s): Marguerite R. Irvin, Degui Zhi, Stella Aslibekyan, Steven A. Claas, Devin Absher, José M. Ordovás, Hemant K. Tiwari, Simon Watkins, Donna K. Arnett
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0234605

Understanding marine larval dispersal in a broadcast-spawning invertebrate: A dispersal modelling approach for optimising spat collection of the Fijian black-lip pearl oyster Pinctada margaritifera
Cited by: 6
Author(s): Monal M. Lal, Cyprien Bosserelle, Pranesh Kishore, Paul C. Southgate
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0240947

A comprehensive examination of the lysine acetylation targets in paper mulberry based on proteomics analyses
Cited by: 4
Author(s): Ping Li, Chao Chen, Yibo Dong
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-021-07993-5

Exploration of the lactation function of protein phosphorylation sites in goat mammary tissues by phosphoproteome analysis
Cited by: 2
Author(s): Chao Zhu, Junru Zhu, Qiangde Duan, Yue Jiang, Hao Yin, Yizhu He, Fu Li, Xiaopeng An
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0071364

Metabolic Response of Candida albicans to Phenylethyl Alcohol under Hyphae-Inducing Conditions
Cited by: 21
Author(s): Ting-Li Han, Sergey Tumanov, Richard D. Cannon, Silas G. Villas‐Bôas
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-020-66860-7

Genome-wide characterization and expression analyses of the auxin/indole-3-acetic acid (Aux/IAA) gene family in barley (Hordeum vulgare L.)
Cited by: 13
Author(s): Qi Shi, Yueya Zhang, Vinh-Trieu To, Shi Jin, Dabing Zhang, Wenguo Cai
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0138965

Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions
Cited by: 40
Author(s): Mariusz A. Bromke, Jamal S. M. Sabir, F. A. Al-Fassi, Nahid H. Hajarah, Saleh A. Kabli, Abdulrahman L. Al-Malki, Matt P. Ashworth, Michaël Méret, Robert K. Jansen, Lothar Willmitzer
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0168130

New Altered Non-Fibrillar Collagens in Human Dilated Cardiomyopathy: Role in the Remodeling Process
Cited by: 26
Author(s): Carolina Gil-Cayuela, Esther Roselló‐Lletí, Ana Ortega, Estefanía Tarazón, Juan Carlos Triviño, Luis Martínez‐Dolz, José Ramón González-Juanatey, Francisca Lago, Manuel Portolés, Miguel Rivera
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0137522

Integrated Analyses of Gene Expression Profiles Digs out Common Markers for Rheumatic Diseases
Cited by: 17
Author(s): Lan Wang, Long‐Fei Wu, Xin Lu, Xing‐Bo Mo, Zaixiang Tang, Shu‐Feng Lei, Fei‐Yan Deng
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0012103

Tumorigenic WAP-T Mouse Mammary Carcinoma Cells: A Model for a Self-Reproducing Homeostatic Cancer Cell System
Cited by: 22
Author(s): Florian Wegwitz, Mark-Andreas Kluth, Claudia Mänz, Benjamin Otto, Katharina Gruner, Christina Heinlein, Marion Kühl, Gabriele Warnecke, Udo Schumacher, Wolfgang Deppert, Genrich V. Tolstonog
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pntd.0007758

Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding
Cited by: 35
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0004323

Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding
Cited by: 103
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0007828

Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile
Cited by: 14
Author(s): David A. Rasko, Felipe Del Canto, Qingwei Luo, James M. Fleckenstein, Roberto Vidal, Tracy H. Hazen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0001514

Molecular Mechanisms of Drug Resistance in Natural Leishmania Populations Vary with Genetic Background
Cited by: 76
Author(s): Saskia Decuypere, Manu Vanaerschot, Kirstyn Brunker, Hideo Imamura, Sylke Müller, Basudha Khanal, Suman Rijal, Jean‐Claude Dujardin, Graham H. Coombs
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pntd.0004302

Phenotypic Features of Circulating Leukocytes from Non-human Primates Naturally Infected with Trypanosoma cruzi Resemble the Major Immunological Findings Observed in Human Chagas Disease
Cited by: 12
Author(s): Renato Sathler-Avelar, Danielle Marquete Vitelli-Avelar, Armanda Moreira Mattoso-Barbosa, Marcelo Perdigão-de-Oliveira, Ronaldo Peres Costa, Silvana Maria Elói-Santos, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Edward J. Dick, Gene B. Hubbard, Jane F. VandeBerg, John L. VandeBerg
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-63470-1

SWATH-MS-based quantitative proteomics reveals a uniquely intricate defense response in Cnaphalocrocis medinalis-resistant rice
Cited by: 8
Author(s): Boon Huat Cheah, Hsiao‐Han Lin, Han‐Ju Chien, Chung-Ta Liao, Liyu Liu, Chien‐Chen Lai, Ya-Fen Lin, Wen-Po Chuang
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.14894

Inhibition of CDK8 mediator kinase suppresses estrogen dependent transcription and the growth of estrogen receptor positive breast cancer
Cited by: 91
Author(s): Martina S.J. McDermott, Alexander A. Chumanevich, Chang-Uk Lim, Jiaxin Liang, Mengqian Chen, Serena Altilia, David J. Oliver, James M. Rae, Michael Shtutman, Hippokratis Kiaris, Balázs Győrffy, Igor B. Roninson, Eugenia V. Broude
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-70135-6

A panel of anti-influenza virus nucleoprotein antibodies selected from phage-displayed synthetic antibody libraries with rapid diagnostic capability to distinguish diverse influenza virus subtypes
Cited by: 5
Author(s): Yu Chen, Ing-Chien Chen, Chang‐Shung Tung, Hung-Pin Peng, Jhih-Wei Jian, Yi-Kai Chiu, Yueh-Liang Tsou, Hong-Sen Chen, Yu‐Hsuan Huang, Wesley Wei-Wen Hsiao, Yong Alison Wang, An-Suei Yang
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-10-544

Differentially expressed genes for aggressive pecking behaviour in laying hens
Cited by: 21
Author(s): Bart Buitenhuis, Jakob Hedegaard, Luc Janss, Peter Sørensen
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2156-16-S1-S1

Candidate genes in quantitative trait loci associated with absolute and relative kidney weight in rats with Inherited Stress Induced Arterial Hypertension
Cited by: 5
Author(s): Olga E. Redina, S. É. Smolenskaya, Л. О. Климов, A. L. Markel
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pntd.0005365

Plasmodium vivax gametocytes in the bone marrow of an acute malaria patient and changes in the erythroid miRNA profile
Cited by: 63
Author(s): Bàrbara Baró, Katrien Deroost, Tainá Raiol, Marcelo Augusto Mota Brito, Anne Cristine Gomes de Almeida, Armando de Menezes-Neto, Erick Frota Gomes Figueiredo, Aline Alencar, Rodrigo de Souza Leitão, Fernando Val, Wuelton Marcelo Monteiro, Anna Oliveira, Maria del Pilar Armengol, Carmen Fernández-Becerra, Marcus Vinícius Guimarães Lacerda, Hernando A. del Portillo
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.16320

Targeting the PIM protein kinases for the treatment of a T-cell acute lymphoblastic leukemia subset
Cited by: 32
Author(s): Megha Padi, Libia A. Luevano, Ningfei An, Ritu Pandey, Neha Singh, Jin H. Song, Jon C. Aster, Xue-Zhong Yu, Shikhar Mehrotra, Andrew S. Kraft
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-72311-0

The phosphoproteomic responses of duck (Cairna moschata) to classical/novel duck reovirus infections in the spleen tissue
Cited by: 5
Author(s): Tao Yun, Jionggang Hua, Weicheng Ye, Na Zheng, Liu Chen, Cun Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-71967-y

Unique repertoire of anti-carbohydrate antibodies in individual human serum
Cited by: 13
Author(s): Ralph N D Luetscher, Tanya R. McKitrick, Chao Gao, Akul Y. Mehta, Alyssa M McQuillan, Robert Kardish, Kayluz Frias Boligan, Xuezheng Song, Lenette L. Lu, Jamie Heimburg-Molinaro, Stephan von Gunten, Galit Alter, Richard D. Cummings
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12861-020-00227-z

Label-free quantitative proteomic analysis of insect larval and metamorphic molts
Cited by: 4
Author(s): Weiye Si, Qingjie Wang, Yu Liu, Du-Juan Dong
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pntd.0008373

Comparative genomic analysis provides insight into the phylogeny and virulence of atypical enteropathogenic Escherichia coli strains from Brazil
Cited by: 10
Author(s): Rodrigo T. Hernandes, Tracy H. Hazen, Luís Fernando dos Santos, Taylor K. S. Richter, Jane Michalski, David A. Rasko
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.0020120

Who Ate Whom? Adaptive Helicobacter Genomic Changes That Accompanied a Host Jump from Early Humans to Large Felines
Cited by: 153
Author(s): Mark Eppinger, Claudia Baar, Bodo Linz, Günter Raddatz, Christa Lanz, Heike Keller, Giovanna Morelli, Helga Gressmann, Mark Achtman, Stephan C. Schuster
Software Mentions: 1
Published: about 20 years ago

10.1371/journal.pgen.1003355

Ubiquitous Polygenicity of Human Complex Traits: Genome-Wide Analysis of 49 Traits in Koreans
Cited by: 56
Author(s): Jian Yang, Taeheon Lee, Jaemin Kim, Myeong Chan Cho, Bok‐Ghee Han, Jong‐Young Lee, Hyun-Jeong Lee, Seoae Cho, Heebal Kim
Software Mentions: 1
Published: over 13 years ago

10.1186/s12885-019-5795-x

Circulating tumor cell and cell-free RNA capture and expression analysis identify platelet-associated genes in metastatic lung cancer
Cited by: 27
Author(s): Tim N. Beck, Yanis Boumber, Charu Aggarwal, Jianming Pei, Catherine Thrash-Bingham, Patricia Fittipaldi, Ramilia Vlasenkova, Chandra Rao, Hossein Borghaei, Massimo Cristofanilli, Ranee Mehra, Ilya G. Serebriiskii, R. Katherine Alpaugh
Software Mentions: 1
Published: about 7 years ago

10.3892/mmr.2015.3773

Identification of key transcription factors in caerulein-induced pancreatitis through expression profiling data
Cited by: 4
Author(s): Dachuan Qi, Bo Wu, Danian Tong, Ye Pan, Wei Chen
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-020-72063-x

Rapid growth inhibitory activity of a YafQ-family endonuclease toxin of the Helicobacter pylori tfs4 integrative and conjugative element
Cited by: 2
Author(s): Kwadwo Boampong, Stephanie L Smith, Robin M Delahay
Software Mentions: 1
Published: almost 6 years ago

10.18632/aging.103395

Identification of immunological subtypes of hepatocellular carcinoma with expression profiling of immune-modulating genes
Cited by: 11
Author(s): Di Cao, Meng-Ke Chen, Qingfeng Zhang, Yufeng Zhou, Mei‐Yin Zhang, Shi-Juan Mai, Yaojun Zhang, Minshan Chen, Xiaoxing Li, Huiyun Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/molecules26041128

A Significant Change in Free Amino Acids of Soybean (Glycine max L. Merr) through Ethylene Application
Cited by: 5
Author(s): Yeong Jun Ban, Yeong Hun Song, Jeong‐Yoon Kim, Joon Yung, Imdad Ali, Aizhamal Baiseitova, Abdul Bari Shah, Woe‐Yeon Kim, Ki Hun Park
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules25174001

Anti-Obesity and Gut Microbiota Modulation Effect of Secoiridoid-Enriched Extract from Fraxinus mandshurica Seeds on High-Fat Diet-Fed Mice
Cited by: 15
Author(s): Sheng Guo, Haoan Zhao, Zhengliang Ma, Shanshan Zhang, Mingrou Li, Zhou Zheng, Xiaolin Ren, Chi Tang Ho, Naisheng Bai
Software Mentions: 1
Published: about 6 years ago

10.1186/1755-8166-7-8

Differences and homologies of chromosomal alterations within and between breast cancer cell lines: a clustering analysis
Cited by: 36
Author(s): Milena Rondón-Lagos, Ludovica Verdun di Cantogno, Caterina Marchiò, Nelson Rangel, César Payán‐Gómez, Patrizia Gugliotta, C. Botta, Gianni Bussolati, Sandra Ramírez-Clavijo, Barbara Pasini, Anna Sapino
Software Mentions: 1
Published: over 12 years ago

10.1186/1476-4598-9-303

Investigation of DNA damage response and apoptotic gene methylation pattern in sporadic breast tumors using high throughput quantitative DNA methylation analysis technology
Cited by: 33
Author(s): Ranjana Pal, Niraj Kumar Srivastava, Rupali Chopra, Sailesh Gochhait, Pawan Gupta, Neeraj Prakash, Gaurav Agarwal, R. Bamezai
Software Mentions: 1
Published: almost 16 years ago

10.1038/s41598-020-76836-2

Similarities and differences between the ‘cytokine storms’ in acute dengue and COVID-19
Cited by: 23
Author(s): Shashika Dayarathna, Chandima Jeewandara, Laksiri Gomes, Gayasha Somathilaka, Deshni Jayathilaka, Vimalahan Vimalachandran, Ananda Wijewickrama, Eranga Narangoda, Damayanthi Idampitiya, Graham S. Ogg, Gathsaurie Neelika Malavige
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.17564

Overexpression of a novel candidate oncogene KIF14 correlates with tumor progression and poor prognosis in prostate cancer
Cited by: 38
Author(s): Yixiang Zhang, Yeqing Yuan, Peidong Liang, Zhaoxia Zhang, Xiaojing Guo, Ligang Xia, Yingying Zhao, Xing-sheng Shu, Song Sun, Ying Ying, Yingduan Cheng
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-78484-y

Metabolomics analysis of plasma and adipose tissue samples from mice orally administered with polydextrose and correlations with cecal microbiota
Cited by: 7
Author(s): Markku Saarinen, Olli Kärkkäinen, Kati Hanhineva, Kirsti Tiihonen, Ashley A. Hibberd, Kari Mäkelä, Ghulam Shere Raza, Karl‐Heinz Herzig, Heli Anglenius
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.18664

miR-331-3p and Aurora Kinase inhibitor II co-treatment suppresses prostate cancer tumorigenesis and progression
Cited by: 19
Author(s): Michael R. Epis, Keith M. Giles, Dianne J. Beveridge, Kirsty Richardson, Patrick A. Candy, Lisa M. Stuart, Jacqueline M. Bentel, Ronald J. Cohen, Peter J. Leedman
Software Mentions: 1
Published: about 9 years ago

10.3390/microorganisms9081689

Deciphering the Endophytic and Rhizospheric Microbial Communities of a Metallophyte Commelina communis in Different Cu-Polluted Soils
Cited by: 4
Author(s): Li He, Yi Ren, Weimin Zeng, Xueling Wu, Li Shen, Runlan Yu, Yuandong Liu, Jiaokun Li
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-80937-3

The impact of smoking different tobacco types on the subgingival microbiome and periodontal health: a pilot study
Cited by: 12
Author(s): Sausan Al Kawas, Farah Al-Marzooq, Betul Rahman, Jenni A. Shearston, Hiba Saad, Dalenda Benzina, Michael Weitzman
Software Mentions: 1
Published: over 5 years ago

10.1002/mbo3.731

Comparative genomics of theKomagataeibacterstrains—Efficient bionanocellulose producers
Cited by: 47
Author(s): Małgorzata Ryngajłło, Katarzyna Kubiak, Marzena Jędrzejczak-Krzepkowska, Paulina Jacek, Stanisław Bielecki
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-021-81540-w

Photoperiodic regulation of dopamine signaling regulates seasonal changes in retinal photosensitivity in mice
Cited by: 7
Author(s): Kousuke Okimura, Yusuke Nakane, Taeko Nishiwaki‐Ohkawa, Takashi Yoshimura
Software Mentions: 1
Published: over 5 years ago

10.1099/mgen.0.000066

First insight into the faecal microbiota of the high Arctic muskoxen (Ovibos moschatus)
Cited by: 17
Author(s): Alejandro Salgado-Flores, Mathias Bockwoldt, Live Heldal Hagen, Phillip B. Pope, Monica A. Sundset
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2407-10-227

Comprehensive profiling of DNA methylation in colorectal cancer reveals subgroups with distinct clinicopathological and molecular features
Cited by: 91
Author(s): Pei Woon Ang, Marie Loh, Natalia Liem, Pei Li Lim, Fabienne Grieu, Aparna Vaithilingam, Cameron Platell, Wei Peng Yong, Barry Iacopetta, Richie Soong
Software Mentions: 1
Published: over 16 years ago

10.1099/mgen.0.000287

Co-existence of multiple distinct lineages in Vibrio parahaemolyticus serotype O4:K12
Cited by: 0
Author(s): Lin Zhao, Hongyou Chen, Xavier Didelot, Zhenpeng Li, Yinghui Li, Mei‐Ling Chen, Yu Du, Hongqun Zhao, Jie Li, Qinghua Hu, Biao Kan, Min Chen, Bo Pang
Software Mentions: 1
Published: almost 6 years ago

10.1264/jsme2.ME20081

Comparative Analysis of Microbial Communities in Fronds and Roots of Three Duckweed Species: Spirodela polyrhiza, Lemna minor, and Lemna aequinoctialis
Cited by: 15
Author(s): Tomoki Iwashita, Yasuhiro Tanaka, Hideyuki Tamaki, Yasuko Yoneda, Ayaka Makino, Yuka Tateno, Li Yan, Tadashi Toyama, Yoichi Kamagata, Koji Mori
Software Mentions: 1
Published: over 6 years ago

10.1186/ar3457

The gene expression profile of preclinical autoimmune arthritis and its modulation by a tolerogenic disease-protective antigenic challenge
Cited by: 8
Author(s): Hua Yu, Chi-Wei Lu, Ming Tan, Kamal D. Moudgil
Software Mentions: 1
Published: over 15 years ago

10.1186/s12967-016-0855-3

Testing chemotherapy efficacy in HER2 negative breast cancer using patient-derived spheroids
Cited by: 37
Author(s): Kathrin Halfter, Oliver Hoffmann, Nina Ditsch, Mareike Ahne, Frank Arnold, Stefan Paepke, Dieter Grab, Ingo Bauerfeind, Barbara Mayer
Software Mentions: 1
Published: over 10 years ago

10.1186/s13075-019-2067-8

Unique primed status of microglia under the systemic autoimmune condition of lupus-prone mice
Cited by: 15
Author(s): Akihiro Nomura, Daisuke Noto, Goh Murayama, Asako Chiba, Sachiko Miyake
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12934-016-0577-5

Genome-wide Escherichia coli stress response and improved tolerance towards industrially relevant chemicals
Cited by: 45
Author(s): Martin Holm Rau, Patricia Calero, Rebecca M. Lennen, Katherine S. Long, Alex Toftgaard Nielsen
Software Mentions: 1
Published: almost 10 years ago

10.1111/1751-7915.13835

Blocking utilization of major plant biomass polysaccharides leads Aspergillusniger towards utilization of minor components
Cited by: 6
Author(s): Roland S. Kun, Sandra Garrigues, Marcos Di Falco, Adrian Tsang, Ronald P. de Vries
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.10479

Synthetic lethal genetic interactions between Rad54 and PARP-1 in mouse development and oncogenesis
Cited by: 2
Author(s): Mirella Tanori, Arianna Casciati, Francesco Berardinelli, Simona Leonardi, Emanuela Pasquali, Francesca Antonelli, Barbara Tanno, Paola Giardullo, Alessandro Pannicelli, Gabriele Babini, Ilaria De Stefano, Antonella Sgura, Mariateresa Mancuso, Anna Saran, Simonetta Pazzaglia
Software Mentions: 1
Published: about 10 years ago

10.3390/metabo11040227

Pinus pinaster Early Hormonal Defence Responses to Pinewood Nematode (Bursaphelenchus xylophilus) Infection
Cited by: 10
Author(s): Ana Margarida Rodrigues, Swen Langer, Isabel Carrasquinho, Edmund T. Bergström, Tony R. Larson, Jane Thomas‐Oates, Carla António
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo10120516

Exploratory Analysis of Commercial Olive-Based Dietary Supplements Using Untargeted and Targeted Metabolomics
Cited by: 2
Author(s): Mar Garcia-Aloy, Nelli Groff, Domenico Masuero, Mauro Nisi, Álvaro Junio Pereira Franco, Furio Battelini, Urška Vrhovšek, Fulvio Mattivi
Software Mentions: 1
Published: over 5 years ago

10.1186/s13568-020-01101-8

Bacillus velezensis 83 a bacterial strain from mango phyllosphere, useful for biological control and plant growth promotion
Cited by: 31
Author(s): Karina A. Balderas-Ruíz, Patricia Bustos, Rosa I. Santamaría, Víctor González, Sergio Andrés Cristiano-Fajardo, Salvador Barrera‐Ortiz, Miriam Mezo-Villalobos, Sergio Aranda‐Ocampo, Angel Arturo Guevara‐García, Enrique Galindo, Leobardo Serrano‐Carreón
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo10100383

5-CQA and Mangiferin, Two Leaf Biomarkers of Adaptation to Full Sun or Shade Conditions in Coffea arabica L.
Cited by: 4
Author(s): Teerarat Duangsodsri, Luc Villain, Ialy Rojo Vestalys, Serge Michalet, Cécile Abdallah, Jean‐Christophe Breitler, Mélanie Bordeaux, Andrés Mauricio Villegas, Marson Raherimandimby, Laurent Legendre, Hervé Etienne, Benoît Bertrand, Claudine Campa
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo9060105

Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains
Cited by: 8
Author(s): Diana Montes-Grajales, Nuria Esturau‐Escofet, Baldomero Esquivel, Esperanza Martínez‐Romero
Software Mentions: 1
Published: over 7 years ago

10.1097/MD.0000000000011887

Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer
Cited by: 36
Author(s): Naiqiang Zhu, Jingyi Hou, Yuanhao Wu, Jinxin Liu, Geng Li, Wenjia Zhao, Guiyun Ma, Bin Chen, Youxin Song
Software Mentions: 1
Published: about 8 years ago

10.3390/medicina57030218

Transcriptomics of Long-Term Meditation Practice: Evidence for Prevention or Reversal of Stress Effects Harmful to Health
Cited by: 7
Author(s): Supaya Wenuganen, Kenneth G. Walton, Shilpa Katta, Clifton L. Dalgard, Gauthaman Sukumar, Joshua Starr, Frederick Travis, Robert K. Wallace, Paul Morehead, Nancy K Lonsdorf, Meera Srivastava, John B. Fagan
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000893

Human G-MDSCs are neutrophils at distinct maturation stages promoting tumor growth in breast cancer
Cited by: 11
Author(s): Meliha Mehmeti-Ajradini, Caroline Bergenfelz, Anna-Maria Larsson, Robert Carlsson, Kristian Riesbeck, Jonas Ahl, Helena Janols, Marlene Wullt, Anders Bredberg, Eva Källberg, Fríða Björk Gunnarsdóttir, Camilla Rydberg Millrud, Lisa Rydén, Gesine Paul, Niklas Loman, Jörgen Adolfsson, Ana Carneiro, Karin Jirström, Fredrika Killander, Daniel Bexell, Karin Leandersson
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-021-02014-7

Metabolome analysis reveals a diversity of cancer tissues in advanced epithelial ovarian cancer
Cited by: 2
Author(s): Kosuke Yoshida, Nobuhisa Yoshikawa, Kazuhisa Kitami, Satoshi Tamauchi, Yoshiki Ikeda, Akira Yokoi, Kimihiro Nishino, Keiko Niimi, Hiroaki Kajiyama
Software Mentions: 1
Published: about 5 years ago

10.3390/nu12113252

Bilberry Anthocyanins Ameliorate NAFLD by Improving Dyslipidemia and Gut Microbiome Dysbiosis
Cited by: 33
Author(s): Hironobu Nakano, Shusong Wu, Kozue Sakao, Taichi Hara, Jianhua He, Santos García, Kalidas Shetty, De‐Xing Hou
Software Mentions: 1
Published: almost 6 years ago

10.1002/brb3.1086

Estriol-mediated neuroprotection in multiple sclerosis localized by voxel-based morphometry
Cited by: 21
Author(s): Allan MacKenzie-Graham, Jenny Brook, Florian Kurth, Yuichiro Itoh, Cassandra Meyer, Michael Montag, He-Jing Wang, Robert M. Elashoff, Rhonda R. Voskuhl
Software Mentions: 1
Published: about 8 years ago

10.1002/biot.201500550

Quantitative definition and monitoring of the host cell protein proteome using iTRAQ - a study of an industrial mAb producing CHO-S cell line
Cited by: 25
Author(s): Lesley M. Chiverton, Caroline Evans, Jagroop Pandhal, Andrew Landels, Byron Rees, Peter R. Levison, Phillip C. Wright, C. Mark Smales
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.22839

Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes
Cited by: 5
Author(s): Anna M. Palau, Anne-Kathrin Garz, Jeannine Diesch, Anabel Zwick, Roberto Malinverni, Vanesa Valero, Katrina M. Lappin, Raquel Casquero, Andreas Lennartsson, Johannes Zuber, Tomàs Navarro, Ken Mills, Katharina Götze, Marcus Buschbeck
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13068-019-1516-6

Amelioration of biomass and lipid in marine alga by an endophytic fungus Piriformospora indica
Cited by: 18
Author(s): Vipul Swarup Bhatnagar, Prasun Bandyopadhyay, Girish H. Rajacharya, Sudipta Sarkar, Krishna Mohan Poluri, Shashi Kumar
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.39981

Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1
Cited by: 26
Author(s): Terri M. Driessen, Jong Seo Lee, Janghoo Lim
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13068-019-1556-y

Myceliophthora thermophila Xyr1 is predominantly involved in xylan degradation and xylose catabolism
Cited by: 10
Author(s): Ana Carolina dos Santos Gomes, Daniel Luciano Falkoski, Evy Battaglia, Mao Peng, Maíra Nicolau de Almeida, Nancy Linares, Jean-Paul Meijnen, Jaap Visser, Ronald P. de Vries
Software Mentions: 1
Published: almost 7 years ago

10.3390/biom10091353

MiRNA Profiles of Extracellular Vesicles Secreted by Mesenchymal Stromal Cells—Can They Predict Potential Off-Target Effects?
Cited by: 13
Author(s): Timo Z. Nazari-Shafti, Sebastian Neuber, Ana G. Duran, Vasileios Exarchos, Christien Madlen Beez, Heike Meýborg, Katrin Krüger, Petra Wolint, Johanna Buschmann, R Böni, Martina Seifert, Volkmar Falk, Maximilian Y. Emmert
Software Mentions: 1
Published: almost 6 years ago

10.1155/2013/878956

Characteristics of Clinical Shiga Toxin-ProducingEscherichia coliIsolated from British Columbia
Cited by: 8
Author(s): Kevin Allen, Chad R. Laing, Ana Cancarevic, Yongxiang Zhang, Lili Rosana Mesak, Hai Xu, Ana Paccagnella, Victor P. J. Gannon, Linda Hoang
Software Mentions: 1
Published: over 13 years ago

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