cran: gplots | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2018.03138

Dynamics of Gut Microbiome in Giant Panda Cubs Reveal Transitional Microbes and Pathways in Early Life
Cited by: 25
Author(s): Min Guo, Jianwei Chen, Qiongfang Li, Ying Fu, Guangyi Fan, Jinmin Ma, Ling Peng, Liyun Zeng, Jing Chen, Yayu Wang, Simon Ming‐Yuen Lee
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-015-0414-8

Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation
Cited by: 41
Author(s): Amit Kumar Tripathi, Kundan Singh, Ashwani Pareek, Sneh L. Singla‐Pareek
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-017-04251-1

Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a
Cited by: 15
Author(s): Xueyan Gao, Congyan Wang, Wei Dai, Shenrong Ren, Fang Tao, Xueli He, Guomin Han, Wei Wang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0037945

DNA Barcoding the Native Flowering Plants and Conifers of Wales
Cited by: 140
Author(s): Natasha de Vere, Tim C. G. Rich, Col R. Ford, Sarah A. Trinder, Charlotte Long, Chris W. Moore, Satterthwaite Danielle, Helena Davies, Joël Allainguillaume, Sandra Ronca, Tatiana V. Tatarinova, Garbett Hannah, Kevin J. Walker, M. J. Wilkinson
Software Mentions: 1
Published: over 14 years ago

10.1186/s13148-018-0541-9

Epigenome-wide DNA methylation regulates cardinal pathological features of psoriasis
Cited by: 66
Author(s): Aditi Chandra, Swapan Senapati, Sudipta Roy, Gobinda Chatterjee, Raghunath Chatterjee
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.00369

Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress
Cited by: 108
Author(s): Patricia Hingston, Jessica Chen, Bhavjinder K. Dhillon, Chad R. Laing, Claire Bertelli, Victor P. J. Gannon, Taurai Tasara, Kevin Allen, Fiona S. L. Brinkman, Lisbeth Truelstrup Hansen, Siyun Wang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12870-018-1569-x

Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)
Cited by: 34
Author(s): Arun Kumaran Anguraj Vadivel, Kevin Krysiak, Gang Tian, Sangeeta Dhaubhadel
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13071-020-04119-w

Protein phosphorylation networks in spargana of Spirometra erinaceieuropaei revealed by phosphoproteomic analysis
Cited by: 7
Author(s): Wei Liu, Hailin Tang, Asmaa M.I. Abuzeid, Lei Tan, Aibing Wang, Xueping Wan, Haoji Zhang, Yisong Liu, Guoqing Li
Software Mentions: 1
Published: over 6 years ago

10.1111/cei.13403

Expression profiling of single cells and patient cohorts identifies multiple immunosuppressive pathways and an altered NK cell phenotype in glioblastoma
Cited by: 48
Author(s): Helen J. Close, Lucy F. Stead, Jérémie Nsengimana, Katrina A. Reilly, Alastair P. Droop, Heiko Wurdak, Ryan Mathew, Robert Corns, Julia Newton‐Bishop, Alan Melcher, Susan Short, Graham P. Cook, Erica Wilson
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0010167

Increased Adherence and Expression of Virulence Genes in a Lineage of Escherichia coli O157:H7 Commonly Associated with Human Infections
Cited by: 72
Author(s): Galeb Abu-Ali, Lindsey Ouellette, Scott T. Henderson, David W. Lacher, James T. Riordan, Thomas S. Whittam, Shannon D. Manning
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-017-06999-y

Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains
Cited by: 60
Author(s): David A. Montero, Juliana Velasco, Felipe Del Canto, José L. Puente, Nora Lía Padola, David A. Rasko, Mauricio J. Farfán, Juan Carlos Salazar, Roberto Vidal
Software Mentions: 1
Published: over 9 years ago

10.1128/AAC.01640-17

Discovery of New Inhibitors of Toxoplasma gondii via the Pathogen Box
Cited by: 49
Author(s): Jérémy Spalenka, Sandie Escotte-Binet, Ali Bakiri, Jane Hubert, Jean‐Hugues Renault, Frédéric Velard, Simon Duchateau, Dominique Aubert, A Huguenin, Isabelle Villena
Software Mentions: 1
Published: almost 9 years ago

10.1128/AAC.00829-17

Identification and Mode of Action of a Plant Natural Product Targeting Human Fungal Pathogens
Cited by: 32
Author(s): Stéphane Dorsaz, Tiia Snäkä, Quentin Favre-Godal, Pierre Marc Xavier Maudens, Nathalie Boulens, Pascal Furrer, Samad Nejad Ebrahimi, Matthias Hamburger, Éric Allémann, Katia Gindro, Emerson Ferreira Queiroz, Howard Riezman, Jean‐Luc Wolfender, Dominique Sanglard
Software Mentions: 1
Published: about 9 years ago

10.1186/s12870-017-1183-3

Transcriptomic analysis of wound xylem formation in Pinus canariensis
Cited by: 17
Author(s): Víctor Chano, Carmen Collada, Álvaro Soto
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0117261

CD14 and Complement Crosstalk and Largely Mediate the Transcriptional Response to Escherichia coli in Human Whole Blood as Revealed by DNA Microarray
Cited by: 15
Author(s): Corinna Lau, Ståle Nygård, Hilde Fure, Ole Kristoffer Olstad, Matthew T. G. Holden, Knut Tore Lappegård, Ole-Lars Brekke, Terje Espevik, Eivind Hovig, Tom Eirik Mollnes
Software Mentions: 1
Published: over 11 years ago

10.1186/s12866-017-1047-x

Insights into the Geobacillus stearothermophilus species based on phylogenomic principles
Cited by: 39
Author(s): Sara Burgess, Steve Flint, D. Lindsay, Murray P. Cox, Patrick J. Biggs
Software Mentions: 1
Published: over 9 years ago

10.3390/v13061153

Diversity and Distribution of Viruses Infecting Wild and Domesticated Phaseolus spp. in the Mesoamerican Center of Domestication
Cited by: 4
Author(s): Elizabeth Chiquito-Almanza, Juan Caballero-Pérez, Jorge Alberto Acosta-Gallegos, Víctor Montero-Tavera, Luis Antonio Mariscal-Amaro, José Luis Anaya‐López
Software Mentions: 1
Published: over 5 years ago

10.3390/v13050871

Avian Influenza H7N9 Virus Adaptation to Human Hosts
Cited by: 1
Author(s): Swan Tan, Muhammad Farhan Sjaugi, Siew Chinn Fong, Chong Li, Hadia Syahirah Abd Raman, Nik Elena Nik Mohamed, J. Thomas August, Mohammad Asif Khan
Software Mentions: 1
Published: over 5 years ago

10.3390/v12121402

Increased HIV Subtype Diversity Reflecting Demographic Changes in the HIV Epidemic in New South Wales, Australia
Cited by: 3
Author(s): Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Christine Selvey, Steven J. Nigro, Neil Fraser, Karen Price, Jo Holden, Frederick J. Lee, Dominic E. Dwyer, Benjamin R. Bavinton, Andrew E. Grulich, Anthony D. Kelleher
Software Mentions: 1
Published: almost 6 years ago

10.3390/v11121123

Co-Isolation and Characterization of Two Pandoraviruses and a Mimivirus from a Riverbank in Japan
Cited by: 12
Author(s): Motohiro Akashi, Masaharu Takemura
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0171856

The influence of sexual activity on the vaginal microbiota and Gardnerella vaginalis clade diversity in young women
Cited by: 70
Author(s): Lenka A Vodstrcil, Jimmy Twin, Suzanne M. Garland, Christopher K. Fairley, Jane S Hocking, Matthew Law, Erica L Plummer, Katherine Fethers, Eric P F Chow, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.27667

Therapeutic efficacy of liposomal Grb2 antisense oligodeoxynucleotide (L-Grb2) in preclinical models of ovarian and uterine cancer
Cited by: 4
Author(s): Olivia D. Lara, Emine Bayraktar, Paola Amero, Shaolin Ma, Cristina Ivan, Wei Hu, Ying Wang, Lingegowda S. Mangala, Prasanta Dutta, Pratip K. Bhattacharya, Ana Tari Ashizawa, Gabriel López-Berestein, Cristian Rodríguez-Aguayo, Anil K. Sood
Software Mentions: 1
Published: over 6 years ago

10.1186/s12866-021-02125-1

Dysbiosis of gut microbiota and its correlation with dysregulation of cytokines in psoriasis patients
Cited by: 32
Author(s): Xinyue Zhang, Lingfei Shi, Ting Sun, Kun Guo, Shuang Geng
Software Mentions: 1
Published: over 5 years ago

10.3390/v8100286

Maporal Hantavirus Causes Mild Pathology in Deer Mice (Peromyscus maniculatus)
Cited by: 12
Author(s): Amanda L. McGuire, Kaitlyn Miedema, Joseph R. Fauver, Amber B. Rico, Tawfik Aboellail, Sandra L. Quackenbush, Ann Hawkinson, Tony Schountz
Software Mentions: 1
Published: about 10 years ago

10.1093/ve/vey009

The virome of Drosophila suzukii, an invasive pest of soft fruit
Cited by: 51
Author(s): Nathan Medd, Simon Fellous, Fergal M Waldron, Anne Xuéreb, M. Nakai, J. V. Cross, Darren J. Obbard
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2020.01458

The Microbiome of Posidonia oceanica Seagrass Leaves Can Be Dominated by Planctomycetes
Cited by: 37
Author(s): Timo Kohn, Patrick Rast, Nicolai Kallscheuer, Sandra Wiegand, Christian Boedeker, Mike S. M. Jetten, Olga Jeske, John Vollmers, Anne‐Kristin Kaster, Manfred Rohde, Mareike Jogler, Christian Jogler
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-09439-z

α7 nicotinic acetylcholine receptor signaling modulates the inflammatory phenotype of fetal brain microglia: first evidence of interference by iron homeostasis
Cited by: 22
Author(s): Marina Farrel Cortês, Mingju Cao, H. L. Liu, Craig S. Moore, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Luis B. Barreiro, Jack P. Antel, Martin G. Frasch
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0054644

A Novel Proteomics-Based Clinical Diagnostics Technology Identifies Heterogeneity in Activated Signaling Pathways in Gastric Cancers
Cited by: 35
Author(s): Jeeyun Lee, Sung Hoon Kim, Philip Kim, Xinjun Liu, Tani Lee, Kyoung‐Mee Kim, In‐Gu Do, Joon Oh Park, Se Hoon Park, Jiryeon Jang, Nicholas Hoe, Gulia Harvie, Anne Kuller, Anjali Jain, Gary Meyer, Glen Leesman, Young Suk Park, Min Gew Choi, Tae Sung Sohn, Jae Moon Bae, Ho Yeong Lim, Sharat Singh, Won Ki Kang
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12861-020-00227-z

Label-free quantitative proteomic analysis of insect larval and metamorphic molts
Cited by: 4
Author(s): Weiye Si, Qingjie Wang, Yu Liu, Du-Juan Dong
Software Mentions: 1
Published: almost 6 years ago

10.1002/acn3.50931

Intrathecal cytokine profile in neuropathy with anti‐neurofascin 155 antibody
Cited by: 11
Author(s): Hidenori Ogata, Zhihui Xu, Ryo Yamasaki, Takayuki Fujii, Akira Machida, Nobutoshi Morimoto, Kenichi Kaida, Teruaki Masuda, Yukio Ando, Motoi Kuwahara, Susumu Kusunoki, Yuri Nakamura, Takuya Matsushita, Noriko Isobe, Jun Ichi Kira
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0159030

Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment
Cited by: 8
Author(s): Dragana Dobrijevic, Anne-Laure Abraham, Alexandre Jamet, Emmanuelle Maguin, Maarten van de Guchte
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2016.00551

Diel Variation in Gene Expression of the CO2-Concentrating Mechanism during a Harmful Cyanobacterial Bloom
Cited by: 26
Author(s): Giovanni Sandrini, Robert P. Tann, J. Merijn Schuurmans, S.A.M. van Beusekom, H.C.P. Matthijs, Jef Huisman
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-017-12362-y

Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin
Cited by: 47
Author(s): Joanna E. Kowalczyk, Ronnie J.M. Lubbers, Mao Peng, Evy Battaglia, Jaap Visser, Ronald P. de Vries
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2018.00099

iTRAQ-Based Comparative Proteomic Analysis of Adult Schistosoma japonicum from Water Buffalo and Yellow Cattle
Cited by: 13
Author(s): Qixiao Zhai, Zhiqiang Fu, Yang Hong, Xianjun Yu, Qian Han, Lu Ke, Hao Li, Xuefeng Dou, Chuangang Zhu, Jinming Liu, Jiaojiao Lin, Guoqing Li
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13567-021-00898-x

Klebsiella pneumoniae infection causes mitochondrial damage and dysfunction in bovine mammary epithelial cells
Cited by: 11
Author(s): Jia Cheng, Jv Zhang, Jingyue Yang, Bing Yi, Gang Liu, Man Zhou, John P. Kastelic, Bo Han, Jian Gao
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.02056

1-Methyltryptophan Modifies Apoplast Content in Tomato Plants Improving Resistance Against Pseudomonas syringae
Cited by: 6
Author(s): Loredana Scalschi, Eugenio Llorens, Ana Isabel González-Hernández, M. Valcárcel, Jordi Gamir, Pilar García‐Agustín, Begonya Vicedo, Gemma Camañes
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.39981

Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1
Cited by: 26
Author(s): Terri M. Driessen, Jong Seo Lee, Janghoo Lim
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-13265-8

microRNA profiling in lung tissue and bronchoalveolar lavage of cigarette smoke-exposed mice and in COPD patients: a translational approach
Cited by: 40
Author(s): Griet Conickx, Francisco Avila Cobos, Maarten van den Berge, Alen Faiz, Wim Timens, Pieter S. Hiemstra, Guy Joos, Guy Brusselle, Pieter Mestdagh, Ken R. Bracke
Software Mentions: 1
Published: about 9 years ago

10.1038/s41421-018-0056-8

Four putative SWI2/SNF2 chromatin remodelers have dual roles in regulating DNA methylation in Arabidopsis
Cited by: 18
Author(s): Donglei Yang, Guiping Zhang, Lili Wang, Jingwen Li, Dachao Xu, Cuiru Di, Kai Tang, Lan Yang, Liang Zeng, Daisuke Miki, Cheng‐Guo Duan, Huiming Zhang, Jian‐Kang Zhu
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.01970

Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production
Cited by: 60
Author(s): Julia Hofmann, Andreas Otto, Mareike Berges, Rebekka Biedendieck, Annika-Marisa Michel, Dörte Becher, Dieter Jahn, Meina Neumann‐Schaal
Software Mentions: 1
Published: about 8 years ago

10.1186/s12866-015-0610-6

Liver and blood cytokine microenvironment in HCV patients is associated to liver fibrosis score: a proinflammatory cytokine ensemble orchestrated by TNF and tuned by IL-10
Cited by: 32
Author(s): Soriane de Souza-Cruz, Marilú Barbieri Victória, Andréa Monteiro Tarragô, Allyson Guimarães Costa, João Paulo Diniz Pimentel, Ericka Florêncio Pires, Lorene de Paula Araújo, Jordana Grazziela Alves Coelho-dos-Reis, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Flamir da Silva Victória, Adriana Malheiro
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-017-14161-x

Recurrent water deficit causes epigenetic and hormonal changes in citrus plants
Cited by: 56
Author(s): Diana Matos Neves, Lucas Aragão da Hora Almeida, Dayse Drielly Souza Santana-Vieira, Luciano Freschi, Cláudia Fortes Ferreira, Walter dos Santos Soares Filho, Márcio Gilberto Cardoso Costa, Fabienne Micheli, M. A. Coelho Filho, Abelmon da Silva Gesteira
Software Mentions: 1
Published: about 9 years ago

10.1186/s12885-019-5795-x

Circulating tumor cell and cell-free RNA capture and expression analysis identify platelet-associated genes in metastatic lung cancer
Cited by: 27
Author(s): Tim N. Beck, Yanis Boumber, Charu Aggarwal, Jianming Pei, Catherine Thrash-Bingham, Patricia Fittipaldi, Ramilia Vlasenkova, Chandra Rao, Hossein Borghaei, Massimo Cristofanilli, Ranee Mehra, Ilya G. Serebriiskii, R. Katherine Alpaugh
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.00659

The Anti-Adhesive Effect of Curcumin on Candida albicans Biofilms on Denture Materials
Cited by: 56
Author(s): Hasanain K. A. Alalwan, Ranjith Rajendran, David F. Lappin, Emilie Combet, Muhammad Shahzad, Douglas Robertson, Christopher J. Nile, Craig Williams, Gordon Ramage
Software Mentions: 1
Published: over 9 years ago

10.1186/s12866-016-0762-z

Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes
Cited by: 18
Author(s): Melisha R. Kenedy, Edgar J. Scott, Binu Shrestha, Asha Anand, Henna Iqbal, Justin D. Radolf, David W. Dyer, Darrin R. Akins
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2020.585614

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea
Cited by: 9
Author(s): Yang Xu, Xiaoxia Li, Wenxing Liang, Mengjie Liu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-14823-w

High throughput discovery of influenza virus neutralizing antibodies from phage-displayed synthetic antibody libraries
Cited by: 15
Author(s): Ing-Chien Chen, Yi-Kai Chiu, Yu Chen, Cheng-Chung Lee, Chang‐Shung Tung, Yueh-Liang Tsou, Yu‐Hsuan Huang, Chii-Wann Lin, Hong-Sen Chen, Andrew H.J. Wang, An-Suei Yang
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0190897

The endocannabinoid gene faah2a modulates stress-associated behavior in zebrafish
Cited by: 16
Author(s): Randall G. Krug, Han B. Lee, Louis El Khoury, Ashley N. Sigafoos, Morgan O. Petersen, Karl J. Clark
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13567-016-0392-3

Distinct functional enrichment of transcriptional signatures in pigs with high and low IFN-gamma responses after vaccination with a porcine reproductive and respiratory syndrome virus (PRRSV)
Cited by: 6
Author(s): Tahar Aït-Ali, Iván Díaz, Ferran Soldevila, Esmeralda Cano, Yanli Li, Alastair Wilson, Bruno Giotti, Alan Archibald, Enric Mateu, Laila Darwich
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2017.01534

Independent Shifts of Abundant and Rare Bacterial Populations across East Antarctica Glacial Foreland
Cited by: 24
Author(s): Wenkai Yan, Hongmei Ma, Guitao Shi, Yuansheng Li, Bo Sun, Xiang Xiao, Yu Zhang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0004677

Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori
Cited by: 86
Author(s): Yong Zhang, Xue Zhou, Xie Ge, Jiang-Hao Jiang, Muwang Li, Shihai Jia, Xiaonan Yang, Yunchao Kan, Miao Xing, Guoping Zhao, Fēi Li, Yongping Huang
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-10-S1-S4

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
Cited by: 29
Author(s): Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R. Sanford, Yunlong Liu
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2407-10-227

Comprehensive profiling of DNA methylation in colorectal cancer reveals subgroups with distinct clinicopathological and molecular features
Cited by: 91
Author(s): Pei Woon Ang, Marie Loh, Natalia Liem, Pei Li Lim, Fabienne Grieu, Aparna Vaithilingam, Cameron Platell, Wei Peng Yong, Barry Iacopetta, Richie Soong
Software Mentions: 1
Published: over 16 years ago

10.1186/s12864-015-2153-5

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
Cited by: 514
Author(s): Chandan Pal, Johan Bengtsson‐Palme, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13567-015-0224-x

phoP, SPI1, SPI2 and aroA mutants of Salmonella Enteritidis induce a different immune response in chickens
Cited by: 7
Author(s): Marta Elsheimer-Matulova, Karolína Varmužová, Kamila Kýrová, Hana Havlíčková, František Šišák, Masudur Rahman, Ivan Rychlı́k
Software Mentions: 1
Published: about 11 years ago

10.1016/j.vaccine.2018.09.056

Antigenic and sequence variability of the human respiratory syncytial virus F glycoprotein compared to related viruses in a comprehensive dataset
Cited by: 30
Author(s): Vicente Más, Harish Nair, Harry Campbell, José A. Melero, Thomas C Williams
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.01244

Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade
Cited by: 17
Author(s): Μαρία Κάζου, Voula Alexandraki, Jochen Blom, Bruno Pot, Effie Tsakalidou, Konstantinos Papadimitriou
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-15660-7

Fungal networks serve as novel ecological routes for enrichment and dissemination of antibiotic resistance genes as exhibited by microcosm experiments
Cited by: 18
Author(s): Rashid Nazir, Ju-Pei Shen, Jun‐Tao Wang, Hang‐Wei Hu, Ji‐Zheng He
Software Mentions: 1
Published: about 9 years ago

10.15252/msb.20145857

Systems‐level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry
Cited by: 27
Author(s): Vincy Wing Sze Ho, Ming Kin Wong, Xiaopeng An, Daogang Guan, Jiaofang Shao, Hon Chun Kaoru Ng, Xiaoliang Ren, Kan He, Jinyue Liao, Y U W Ang, Long Chen, Xiaotai Huang, Bin Yan, Yiji Xia, Leanne Lai Hang Chan, King Lau Chow, Hong Yan, Zhongying Zhao
Software Mentions: 1
Published: over 11 years ago

10.1002/path.5373

Clinicopathological and molecular characterisation of ‘multiple‐classifier’ endometrial carcinomas
Cited by: 169
Author(s): Alicia León‐Castillo, Ester Gilvazquez, Remi A. Nout, Vincent T.H.B.M. Smit, Jessica N. McAlpine, Melissa K. McConechy, Stefan Kommoss, Sara Brucker, Joseph W. Carlson, Elisabeth Epstein, Tilman T. Rau, Robert A. Soslow, Raji Ganesan, Xavier Matías‐Guiu, Esther Oliva, Beth T. Harrison, David N. Church, C. Blake Gilks, Tjalling Bosse
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-16082-1

Microbial communities in the native habitats of Agaricus sinodeliciosus from Xinjiang Province revealed by amplicon sequencing
Cited by: 18
Author(s): Jiemin Zhou, Xuming Bai, Rui-Lin Zhao
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2017.02300

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation
Cited by: 22
Author(s): Justin Wright, Veronica Kirchner, W. Bernard, Nikea Ulrich, Christopher J. McLimans, Maria Fernanda Campa, Terry C. Hazen, Tamzen W. Macbeth, David Marabello, Jacob McDermott, Rachel Mackelprang, Kimberly A. Roth, Regina Lamendella
Software Mentions: 1
Published: almost 9 years ago

10.1093/mp/ssu109

Age-Triggered and Dark-Induced Leaf Senescence Require the bHLH Transcription Factors PIF3, 4, and 5
Cited by: 170
Author(s): Yi Song, Chuangwei Yang, Shan Gao, Wei Zhang, Lin Liu, Kálmán Benke
Software Mentions: 1
Published: almost 12 years ago

10.1002/advs.201900809

Biologically Targeted Photo‐Crosslinkable Nanopatch to Prevent Postsurgical Peritoneal Adhesion
Cited by: 8
Author(s): Yu Mi, Feifei Yang, Cameron Bloomquist, Youli Xia, Bo Sun, Yanfei Qi, Kyle Wagner, Stephanie A. Montgomery, Tian Zhang, Andrew Z. Wang
Software Mentions: 1
Published: over 7 years ago

10.1002/mnfr.201900818

Lifestyle‐Intervention‐Induced Reduction of Abdominal Fat Is Reflected by a Decreased Circulating Glycerol Level and an Increased HDL Diameter
Cited by: 4
Author(s): Marian Beekman, Bianca A. M. Schutte, Erik B. van den Akker, Raymond Noordam, Petra Dibbets‐Schneider, Lioe‐Fee de Geus‐Oei, Joris Deelen, Ondine van de Rest, Diana van Heemst, Edith J. M. Feskens, P. Eline Slagboom
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms18040751

Exploring the Genetic Resistance to Gastrointestinal Nematodes Infection in Goat Using RNA-Sequencing
Cited by: 20
Author(s): Ali Akbar Bhuiyan, Jingjin Li, Zhenyang Wu, Peihong Ni, Adeyinka Abiola Adetula, Haiyan Wang, Cheng Zhang, Xiaohui Tang, Anjuman Ara Bhuyan, Zhao Song, Xiaoyong Du
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2021.654783

Reactive Oxygen Species-Related Ceftazidime Resistance Is Caused by the Pyruvate Cycle Perturbation and Reverted by Fe3 + in Edwardsiella tarda
Cited by: 8
Author(s): Jingzhou Ye, Yubin Su, Xuan‐xian Peng, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s12014-021-09314-0

Quantitative proteomics analysis of lysine 2-hydroxyisobutyrylation in IgA nephropathy
Cited by: 5
Author(s): Shaoying Huang, Fengping Zheng, Lin Hua, Xianqing Zhou, Huixuan Xu, Cantong Zhang, Weier Dai, Berthold Hocher, Xinzhou Zhang, Donge Tang, Yong Dai
Software Mentions: 1
Published: almost 6 years ago

10.3892/mmr.2015.3773

Identification of key transcription factors in caerulein-induced pancreatitis through expression profiling data
Cited by: 4
Author(s): Dachuan Qi, Bo Wu, Danian Tong, Ye Pan, Wei Chen
Software Mentions: 1
Published: over 11 years ago

10.3390/molecules26041128

A Significant Change in Free Amino Acids of Soybean (Glycine max L. Merr) through Ethylene Application
Cited by: 5
Author(s): Yeong Jun Ban, Yeong Hun Song, Jeong‐Yoon Kim, Joon Yung, Imdad Ali, Aizhamal Baiseitova, Abdul Bari Shah, Woe‐Yeon Kim, Ki Hun Park
Software Mentions: 1
Published: over 5 years ago

10.3390/ani9010004

Effects of Saccharomyces Cerevisiae Fermentation Products on the Microbial Community throughout the Gastrointestinal Tract of Calves
Cited by: 6
Author(s): Zhijun Cao, Jianxin Xiao, Gibson Maswayi Alugongo, Shoukun Ji, Zhaohai Wu, Shuang Dong, Shengi Li, I. Yoon, Ruby Chung
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-16858-5

Adrenergic receptor agonists induce the differentiation of pluripotent stem cell-derived hepatoblasts into hepatocyte-like cells
Cited by: 9
Author(s): Maki Kotaka, Tarō Toyoda, Katsutaro Yasuda, Yuko Kitano, Chihiro Okada, Akira Ohta, Akira Watanabe, Motonari Uesugi, Kenji Osafune
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17689-0

DUSP1 regulates apoptosis and cell migration, but not the JIP1-protected cytokine response, during Respiratory Syncytial Virus and Sendai Virus infection
Cited by: 18
Author(s): Alexa C. Robitaille, Élise Caron, Nicolas Zucchini, Espérance Mukawera, Damien Adam, Mélissa K. Mariani, Anaïs Gélinas, Audray Fortin, Emmanuelle Brochiero, Nathalie Grandvaux
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0153476

Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster
Cited by: 11
Author(s): Sebald Johanna, Michaela Willi, Ines Schoberleitner, Anne Krogsdam, Dorothea Orth−Höller, Zlatko Trajanoski, Alexandra Lusser
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2018.02639

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature
Cited by: 21
Author(s): Guilherme Campos Tavares, Alex F. Carvalho, Felipe Luiz Pereira, Cristiana Perdigão Rezende, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: about 8 years ago

10.3390/molecules25174001

Anti-Obesity and Gut Microbiota Modulation Effect of Secoiridoid-Enriched Extract from Fraxinus mandshurica Seeds on High-Fat Diet-Fed Mice
Cited by: 15
Author(s): Sheng Guo, Haoan Zhao, Zhengliang Ma, Shanshan Zhang, Mingrou Li, Zhou Zheng, Xiaolin Ren, Chi Tang Ho, Naisheng Bai
Software Mentions: 1
Published: about 6 years ago

10.1186/1755-8166-7-8

Differences and homologies of chromosomal alterations within and between breast cancer cell lines: a clustering analysis
Cited by: 36
Author(s): Milena Rondón-Lagos, Ludovica Verdun di Cantogno, Caterina Marchiò, Nelson Rangel, César Payán‐Gómez, Patrizia Gugliotta, C. Botta, Gianni Bussolati, Sandra Ramírez-Clavijo, Barbara Pasini, Anna Sapino
Software Mentions: 1
Published: almost 13 years ago

10.18632/oncotarget.9076

Abundant PD-L1 expression in Epstein-Barr Virus-infected gastric cancers
Cited by: 228
Author(s): Sarah Derks, Xiaoyun Liao, Anna Maria Chiaravalli, Xiayu Xu, M. Constanza Camargo, Enrico Solcia, Fausto Sessa, Tania Fleitas, Gordon J. Freeman, Scott J. Rodig, Charles S. Rabkin, Adam J. Bass
Software Mentions: 1
Published: over 10 years ago

10.1186/1476-4598-9-303

Investigation of DNA damage response and apoptotic gene methylation pattern in sporadic breast tumors using high throughput quantitative DNA methylation analysis technology
Cited by: 33
Author(s): Ranjana Pal, Niraj Kumar Srivastava, Rupali Chopra, Sailesh Gochhait, Pawan Gupta, Neeraj Prakash, Gaurav Agarwal, R. Bamezai
Software Mentions: 1
Published: almost 16 years ago

10.1038/s41598-017-18236-7

Involvement of Innate Immune System in Late Stages of Inherited Photoreceptor Degeneration
Cited by: 30
Author(s): Raghavi Sudharsan, Daniel P. Beiting, Gustavo D. Aguirre, William A. Beltran
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-19093-0

Phenotypic and Functional Characterization of Peripheral Sensory Neurons derived from Human Embryonic Stem Cells
Cited by: 36
Author(s): Abdullah J Alshawaf, Serena Viventi, Wanzhi Qiu, Giovanna M. D’Abaco, Bryony A Nayagam, Michael Erlichster, Gursharan Chana, Ian Everall, Jason J. Ivanusic, Efstratios Skafidas, Mirella Dottori
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12014-018-9214-0

Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues
Cited by: 1
Author(s): Jun Yi, Huatianshu Hu, Peipei Shi, Shuangshuang Song, Jing Zhao, Lan Xu, Weining Yang, Bin Li, Zhu Jin, Shien Zou
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0214085

Identification of the microbial diversity after fecal microbiota transplantation therapy for chronic intractable constipation using 16s rRNA amplicon sequencing
Cited by: 35
Author(s): Tadashi Ohara
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-21591-8

In silico guided reconstruction and analysis of ICAM-1-binding var genes from Plasmodium falciparum
Cited by: 4
Author(s): Eilidh Carrington, Thomas D. Otto, Tadge Szestak, Frank Lennartz, Matthew K. Higgins, Chris Newbold, Alister G. Craig
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0062483

ARID1A Alterations Are Associated with FGFR3-Wild Type, Poor-Prognosis, Urothelial Bladder Tumors
Cited by: 53
Author(s): Cristina Balbás-Martínez, María Rodríguez-Pinilla, Ariel Casanova, Orlando Domı́nguez, David G. Pisano, Gonzalo Vázquez Gómez, Josep Lloreta, José A. Lorente, Núria Malats, Francisco X. Real
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-018-23090-2

A proteomic insight into vitellogenesis during tick ovary maturation
Cited by: 26
Author(s): Marina Amaral Xavier, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, John R. Yates, Albert Mulenga, Carlos Logullo, Itabajara da Silva Vaz, Adriana Seixas, Carlos Termignoni
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0035659

Proteome-Wide Analysis of Functional Divergence in Bacteria: Exploring a Host of Ecological Adaptations
Cited by: 16
Author(s): Brian E. Caffrey, Tom A. Williams, Xiaowei Jiang, Christina Toft, Karsten Hokamp, Mario A. Fares
Software Mentions: 1
Published: over 14 years ago

10.3389/fmicb.2017.00615

Gene Expression Profiling of Transcription Factors of Helicobacter pylori under Different Environmental Conditions
Cited by: 30
Author(s): Miguel A. De la Cruz, Miguel A. Ares, Kristine von Bargen, Leonardo G. Panunzi, Jessica Martínez-Cruz, Hilda‐Alicia Valdez‐Salazar, César Jiménez-Galicia, Javier Torres
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.01535

Insights on the Effects of Heat Pretreatment, pH, and Calcium Salts on Isolation of Rare Actinobacteria from Karstic Caves
Cited by: 48
Author(s): Bao‐Zhu Fang, Nimaichand Salam, Ming-Xian Han, Jian‐Yu Jiao, Juan Cheng, Du Wei, Min Xiao, Wenjun Li
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-66860-7

Genome-wide characterization and expression analyses of the auxin/indole-3-acetic acid (Aux/IAA) gene family in barley (Hordeum vulgare L.)
Cited by: 13
Author(s): Qi Shi, Yueya Zhang, Vinh-Trieu To, Shi Jin, Dabing Zhang, Wenguo Cai
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0101480

Intrinsic Differences between Oral and Skin Keratinocytes
Cited by: 90
Author(s): Anna Turabelidze, Shujuan Guo, Allison Yen Chung, Lin Chen, Yang Dai, Phillip T. Marucha, Luisa A. DiPietro
Software Mentions: 1
Published: about 12 years ago

10.21451/1984-3143-2017-AR966

Diversity of ejaculated sperm proteins in Moxotó bucks (Capra hircus) evaluated by multiple extraction methods
Cited by: 2
Author(s): Raulzito Fernandes Moreira, Maria Nágila Carneiro Matos, João Garcia Alves, Roberta Vianna do Valle, Â. M. X. Eloy, Tatiana Maria Farias Pinto, Saris Pinto Machado, Cíntia Renata Rocha Costa, José Luiz de Lima, Jorge Lima, Rodrigo Maranguape Silva da Cunha
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0150266

Biological Characterization of Gene Response to Insulin-Induced Hypoglycemia in Mouse Retina
Cited by: 6
Author(s): Martine Emery, Natacha Nanchen, Frédéric Preitner, Mark Ibberson, Raphaël Roduit
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-72311-0

The phosphoproteomic responses of duck (Cairna moschata) to classical/novel duck reovirus infections in the spleen tissue
Cited by: 5
Author(s): Tao Yun, Jionggang Hua, Weicheng Ye, Na Zheng, Liu Chen, Cun Zhang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0022548

Stage-Specific Histone Modification Profiles Reveal Global Transitions in the Xenopus Embryonic Epigenome
Cited by: 38
Author(s): Tobias D. Schneider, José M. Arteaga-Salas, Edith Mentele, Róbert Dávid, Dario Nicetto, Axel Imhof, Ralph A.W. Rupp
Software Mentions: 1
Published: over 15 years ago

10.1186/s12014-020-09279-6

Effects of cryopreservation and long-term culture on biological characteristics and proteomic profiles of human umbilical cord-derived mesenchymal stem cells
Cited by: 19
Author(s): Xufeng Fu, Bo Xu, Jiang Jiang, Xing Du, Xiaoli Yu, Yaping Yan, Shanshan Li, Briauna Marie Inglis, Huiming Ma, Hongyan Wang, Xiuying Pei, Wei Si
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0148682

Evaluating the Metal Tolerance Capacity of Microbial Communities Isolated from Alberta Oil Sands Process Water
Cited by: 8
Author(s): Mathew L. Frankel, Marc A. Demeter, Joe Lemire, Raymond J. Turner
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms19113438

Identification of Soybean Genes Whose Expression is Affected by the Ensifer fredii HH103 Effector Protein NopP
Cited by: 15
Author(s): Jinhui Wang, Jieqi Wang, Chunyan Liu, Chao Ma, Changyu Li, Yongqian Zhang, Zhaoming Qi, Rong Zhu, Yan Shi, Jianan Zou, Qingying Li, Junjie Zhu, Yan Wen, Zhijun Sun, Hanxi Liu, Hongwei Jiang, Zhan Yin, Zhenbang Hu, Qingshan Chen, Xiaoxia Wu, Dawei Xin
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-019-6119-x

A high-resolution genomic composition-based method with the ability to distinguish similar bacterial organisms
Cited by: 4
Author(s): Yizhuang Zhou, Wenting Zhang, Huixian Wu, Kai Huang, Junfei Jin
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.01459

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica
Cited by: 27
Author(s): Maria Hoffmann, James B. Pettengill, Narjol González-Escalona, John N. Miller, Sherry Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday
Software Mentions: 1
Published: over 9 years ago

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Papers Mentioning gplots 2,122