cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/s13567-021-00898-x

Klebsiella pneumoniae infection causes mitochondrial damage and dysfunction in bovine mammary epithelial cells
Cited by: 11
Author(s): Jia Cheng, Jv Zhang, Jingyue Yang, Bing Yi, Gang Liu, Man Zhou, John P. Kastelic, Bo Han, Jian Gao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-04251-1

Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a
Cited by: 15
Author(s): Xueyan Gao, Congyan Wang, Wei Dai, Shenrong Ren, Fang Tao, Xueli He, Guomin Han, Wei Wang
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.43963

The ion channel ppk301 controls freshwater egg-laying in the mosquito Aedes aegypti
Cited by: 71
Author(s): Benjamin J. Matthews, Meg A Younger, Leslie B. Vosshall
Software Mentions: 1
Published: over 7 years ago

10.3390/nu12082238

Ginseng-Induced Changes to Blood Vessel Dilation and the Metabolome of Rats
Cited by: 9
Author(s): Hyeon-Jeong Lee, Bomin Kim, Soo Hee Lee, Ju-Tae Sohn, Jae Woong Choi, Chang‐Won Cho, Hee‐Do Hong, Young Kyoung Rhee, Hyun‐Jin Kim
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2017.02300

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation
Cited by: 22
Author(s): Justin Wright, Veronica Kirchner, W. Bernard, Nikea Ulrich, Christopher J. McLimans, Maria Fernanda Campa, Terry C. Hazen, Tamzen W. Macbeth, David Marabello, Jacob McDermott, Rachel Mackelprang, Kimberly A. Roth, Regina Lamendella
Software Mentions: 1
Published: almost 9 years ago

10.1093/hmg/ddaa146

Pre-natal manifestation of systemic developmental abnormalities in spinal muscular atrophy
Cited by: 20
Author(s): Anna A. L. Motyl, Kiterie M E Faller, Ewout J N Groen, Ronald A. Kline, Samantha L. Eaton, Leire M. Ledahawsky, Helena Chaytow, Douglas J. Lamont, Thomas M. Wishart, Yu-Ting Huang, Thomas H. Gillingwater
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-72311-0

The phosphoproteomic responses of duck (Cairna moschata) to classical/novel duck reovirus infections in the spleen tissue
Cited by: 5
Author(s): Tao Yun, Jionggang Hua, Weicheng Ye, Na Zheng, Liu Chen, Cun Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo11040227

Pinus pinaster Early Hormonal Defence Responses to Pinewood Nematode (Bursaphelenchus xylophilus) Infection
Cited by: 10
Author(s): Ana Margarida Rodrigues, Swen Langer, Isabel Carrasquinho, Edmund T. Bergström, Tony R. Larson, Jane Thomas‐Oates, Carla António
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-71967-y

Unique repertoire of anti-carbohydrate antibodies in individual human serum
Cited by: 13
Author(s): Ralph N D Luetscher, Tanya R. McKitrick, Chao Gao, Akul Y. Mehta, Alyssa M McQuillan, Robert Kardish, Kayluz Frias Boligan, Xuezheng Song, Lenette L. Lu, Jamie Heimburg-Molinaro, Stephan von Gunten, Galit Alter, Richard D. Cummings
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.654783

Reactive Oxygen Species-Related Ceftazidime Resistance Is Caused by the Pyruvate Cycle Perturbation and Reverted by Fe3 + in Edwardsiella tarda
Cited by: 8
Author(s): Jingzhou Ye, Yubin Su, Xuan‐xian Peng, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-32969-z

Integrated evidence reveals a new species in the ancient blue coral genus Heliopora (Octocorallia)
Cited by: 27
Author(s): Zoe T. Richards, Nina Yasuda, Taisei Kikuchi, Taryn Foster, Chika Mitsuyuki, Michael Stat, Yoshihisa Suyama, Nerida G. Wilson
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0198943

Evaluation of phenotypic and functional stability of RAW 264.7 cell line through serial passages
Cited by: 177
Author(s): Bartłomiej Taciak, Maciej Białasek, Agata Braniewska, Zuzanna Sas, Paulina Sawicka, Łukasz Kiraga, Tomasz P. Rygiel, Magdalena Król
Software Mentions: 1
Published: about 8 years ago

10.1186/s13567-016-0392-3

Distinct functional enrichment of transcriptional signatures in pigs with high and low IFN-gamma responses after vaccination with a porcine reproductive and respiratory syndrome virus (PRRSV)
Cited by: 6
Author(s): Tahar Aït-Ali, Iván Díaz, Ferran Soldevila, Esmeralda Cano, Yanli Li, Alastair Wilson, Bruno Giotti, Alan Archibald, Enric Mateu, Laila Darwich
Software Mentions: 1
Published: almost 10 years ago

10.3390/metabo10120516

Exploratory Analysis of Commercial Olive-Based Dietary Supplements Using Untargeted and Targeted Metabolomics
Cited by: 2
Author(s): Mar Garcia-Aloy, Nelli Groff, Domenico Masuero, Mauro Nisi, Álvaro Junio Pereira Franco, Furio Battelini, Urška Vrhovšek, Fulvio Mattivi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0214085

Identification of the microbial diversity after fecal microbiota transplantation therapy for chronic intractable constipation using 16s rRNA amplicon sequencing
Cited by: 35
Author(s): Tadashi Ohara
Software Mentions: 1
Published: over 7 years ago

10.1186/s13567-015-0224-x

phoP, SPI1, SPI2 and aroA mutants of Salmonella Enteritidis induce a different immune response in chickens
Cited by: 7
Author(s): Marta Elsheimer-Matulova, Karolína Varmužová, Kamila Kýrová, Hana Havlíčková, František Šišák, Masudur Rahman, Ivan Rychlı́k
Software Mentions: 1
Published: almost 11 years ago

10.1099/mgen.0.000287

Co-existence of multiple distinct lineages in Vibrio parahaemolyticus serotype O4:K12
Cited by: 0
Author(s): Lin Zhao, Hongyou Chen, Xavier Didelot, Zhenpeng Li, Yinghui Li, Mei‐Ling Chen, Yu Du, Hongqun Zhao, Jie Li, Qinghua Hu, Biao Kan, Min Chen, Bo Pang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.02639

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature
Cited by: 21
Author(s): Guilherme Campos Tavares, Alex F. Carvalho, Felipe Luiz Pereira, Cristiana Perdigão Rezende, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0171856

The influence of sexual activity on the vaginal microbiota and Gardnerella vaginalis clade diversity in young women
Cited by: 70
Author(s): Lenka A Vodstrcil, Jimmy Twin, Suzanne M. Garland, Christopher K. Fairley, Jane S Hocking, Matthew Law, Erica L Plummer, Katherine Fethers, Eric P F Chow, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-021-07993-5

Exploration of the lactation function of protein phosphorylation sites in goat mammary tissues by phosphoproteome analysis
Cited by: 2
Author(s): Chao Zhu, Junru Zhu, Qiangde Duan, Yue Jiang, Hao Yin, Yizhu He, Fu Li, Xiaopeng An
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pntd.0007828

Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile
Cited by: 14
Author(s): David A. Rasko, Felipe Del Canto, Qingwei Luo, James M. Fleckenstein, Roberto Vidal, Tracy H. Hazen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0101480

Intrinsic Differences between Oral and Skin Keratinocytes
Cited by: 90
Author(s): Anna Turabelidze, Shujuan Guo, Allison Yen Chung, Lin Chen, Yang Dai, Phillip T. Marucha, Luisa A. DiPietro
Software Mentions: 1
Published: almost 12 years ago

10.1007/s00125-021-05491-7

Polygenic risk scores predict diabetes complications and their response to intensive blood pressure and glucose control
Cited by: 18
Author(s): Johanne Tremblay, Mounsif Haloui, Redha Attaoua, Ramzan Tahir, Camil Hishmih, François Harvey, François-Christophe Marois-Blanchet, Carole Long, Paul Simon, Lara Santucci, Candan Hızel, John Chalmers, Michel Marre, Stephen Harrap, Renata Cífková, Alena Krajčoviechová, David R. Matthews, Bryan Williams, Neil Poulter, Sophia Zoungas, Stephen Colagiuri, Giuseppe Mancia, Diederick E. Grobbee, Anthony Rodgers, Liusheng Liu, Mawussé Agbessi, Vanessa Bruat, Marie-Julie Favé, Michelle P Harwood, Philip Awadalla, Mark Woodward, Julie Hussin, Pavel Hamet
Software Mentions: 1
Published: about 5 years ago

10.3390/metabo10100383

5-CQA and Mangiferin, Two Leaf Biomarkers of Adaptation to Full Sun or Shade Conditions in Coffea arabica L.
Cited by: 4
Author(s): Teerarat Duangsodsri, Luc Villain, Ialy Rojo Vestalys, Serge Michalet, Cécile Abdallah, Jean‐Christophe Breitler, Mélanie Bordeaux, Andrés Mauricio Villegas, Marson Raherimandimby, Laurent Legendre, Hervé Etienne, Benoît Bertrand, Claudine Campa
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0189032

Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates
Cited by: 12
Author(s): Bryan K. Cole, Edgar J. Scott, Marko Ilikj, David Bard, Darrin R. Akins, David W. Dyer, Susana Chávez-Bueno
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0037933

Prenatal Famine and Genetic Variation Are Independently and Additively Associated with DNA Methylation at Regulatory Loci within IGF2/H19
Cited by: 131
Author(s): Elmar W. Tobi, P. Eline Slagboom, Jenny van Dongen, Dennis Kremer, Aryeh D. Stein, Hein Putter, Bastiaan T. Heijmans, L. H. Lumey
Software Mentions: 1
Published: over 14 years ago

10.1186/ar3457

The gene expression profile of preclinical autoimmune arthritis and its modulation by a tolerogenic disease-protective antigenic challenge
Cited by: 8
Author(s): Hua Yu, Chi-Wei Lu, Ming Tan, Kamal D. Moudgil
Software Mentions: 1
Published: over 15 years ago

10.1038/s41598-020-72063-x

Rapid growth inhibitory activity of a YafQ-family endonuclease toxin of the Helicobacter pylori tfs4 integrative and conjugative element
Cited by: 2
Author(s): Kwadwo Boampong, Stephanie L Smith, Robin M Delahay
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0063059

Analysis of Nitrification Efficiency and Microbial Community in a Membrane Bioreactor Fed with Low COD/N-Ratio Wastewater
Cited by: 21
Author(s): Jinxing Ma, Zhiwei Wang, Chaowei Zhu, Shumeng Liu, Qiaoying Wang, Zhichao Wu
Software Mentions: 1
Published: over 13 years ago

10.1002/advs.201900809

Biologically Targeted Photo‐Crosslinkable Nanopatch to Prevent Postsurgical Peritoneal Adhesion
Cited by: 8
Author(s): Yu Mi, Feifei Yang, Cameron Bloomquist, Youli Xia, Bo Sun, Yanfei Qi, Kyle Wagner, Stephanie A. Montgomery, Tian Zhang, Andrew Z. Wang
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.00615

Gene Expression Profiling of Transcription Factors of Helicobacter pylori under Different Environmental Conditions
Cited by: 30
Author(s): Miguel A. De la Cruz, Miguel A. Ares, Kristine von Bargen, Leonardo G. Panunzi, Jessica Martínez-Cruz, Hilda‐Alicia Valdez‐Salazar, César Jiménez-Galicia, Javier Torres
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.01535

Insights on the Effects of Heat Pretreatment, pH, and Calcium Salts on Isolation of Rare Actinobacteria from Karstic Caves
Cited by: 48
Author(s): Bao‐Zhu Fang, Nimaichand Salam, Ming-Xian Han, Jian‐Yu Jiao, Juan Cheng, Du Wei, Min Xiao, Wenjun Li
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-11-332

Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Cited by: 142
Author(s): Luis David Alcaraz, Gabriel Moreno‐Hagelsieb, Luis E. Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-018-34862-1

Arabidopsis molybdenum cofactor sulfurase ABA3 contributes to anthocyanin accumulation and oxidative stress tolerance in ABA-dependent and independent ways
Cited by: 35
Author(s): S. Watanabe, Muneo Sato, Yuji Sawada, Maho Tanaka, Atsushi Matsui, Yuka Kanno, Masami Yokota Hirai, Motoaki Seki, Atsushi Sakamoto, Mitsunori Seo
Software Mentions: 1
Published: almost 8 years ago

10.1264/jsme2.ME20081

Comparative Analysis of Microbial Communities in Fronds and Roots of Three Duckweed Species: Spirodela polyrhiza, Lemna minor, and Lemna aequinoctialis
Cited by: 15
Author(s): Tomoki Iwashita, Yasuhiro Tanaka, Hideyuki Tamaki, Yasuko Yoneda, Ayaka Makino, Yuka Tateno, Li Yan, Tadashi Toyama, Yoichi Kamagata, Koji Mori
Software Mentions: 1
Published: over 6 years ago

10.1186/1476-4598-9-303

Investigation of DNA damage response and apoptotic gene methylation pattern in sporadic breast tumors using high throughput quantitative DNA methylation analysis technology
Cited by: 33
Author(s): Ranjana Pal, Niraj Kumar Srivastava, Rupali Chopra, Sailesh Gochhait, Pawan Gupta, Neeraj Prakash, Gaurav Agarwal, R. Bamezai
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-10-S1-S4

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
Cited by: 29
Author(s): Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R. Sanford, Yunlong Liu
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0240947

A comprehensive examination of the lysine acetylation targets in paper mulberry based on proteomics analyses
Cited by: 4
Author(s): Ping Li, Chao Chen, Yibo Dong
Software Mentions: 1
Published: over 5 years ago

10.15252/msb.20145857

Systems‐level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry
Cited by: 27
Author(s): Vincy Wing Sze Ho, Ming Kin Wong, Xiaopeng An, Daogang Guan, Jiaofang Shao, Hon Chun Kaoru Ng, Xiaoliang Ren, Kan He, Jinyue Liao, Y U W Ang, Long Chen, Xiaotai Huang, Bin Yan, Yiji Xia, Leanne Lai Hang Chan, King Lau Chow, Hong Yan, Zhongying Zhao
Software Mentions: 1
Published: over 11 years ago

10.1590/1678-4685-GMB-2019-0401

Skin transcriptional profiles in Oophaga poison frogs
Cited by: 1
Author(s): Andrés Posso‐Terranova, José Á. Andrés
Software Mentions: 1
Published: over 6 years ago

10.1186/s12711-016-0184-2

Genetic architecture of fatty acid composition in the longissimus dorsi muscle revealed by genome-wide association studies on diverse pig populations
Cited by: 44
Author(s): Wanchang Zhang, Junjie Zhang, Leilei Cui, Junwu Ma, Congying Chen, Huashui Ai, Xianhua Xie, Li Lin, Shijun Xiao, Lusheng Huang, Jun Ren, Bin Yang
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-017-06999-y

Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains
Cited by: 60
Author(s): David A. Montero, Juliana Velasco, Felipe Del Canto, José L. Puente, Nora Lía Padola, David A. Rasko, Mauricio J. Farfán, Juan Carlos Salazar, Roberto Vidal
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pntd.0004323

Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding
Cited by: 103
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 10 years ago

10.1534/genetics.117.203521

Toward Universal Forward Genetics: Using a Draft Genome Sequence of the Nematode Oscheius tipulae To Identify Mutations Affecting Vulva Development
Cited by: 17
Author(s): Fabrice Besnard, Georgios Koutsovoulos, Sana Dieudonné, Mark Blaxter, Marie Anne Félix
Software Mentions: 1
Published: about 9 years ago

10.1186/s13075-019-2067-8

Unique primed status of microglia under the systemic autoimmune condition of lupus-prone mice
Cited by: 15
Author(s): Akihiro Nomura, Daisuke Noto, Goh Murayama, Asako Chiba, Sachiko Miyake
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pgen.1008068

The H3K27me3 demethylase REF6 promotes leaf senescence through directly activating major senescence regulatory and functional genes in Arabidopsis
Cited by: 43
Author(s): Xiaolei Wang, Jiong Gao, Shan Gao, Yi Song, Zhen Yang, Kálmán Benke
Software Mentions: 1
Published: over 7 years ago

10.1186/gb-2012-13-8-r71

A gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers
Cited by: 67
Author(s): Nathan Palmer, Patrick Raphael Schmid, Bonnie Berger, Isaac S. Kohane
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-10-296

Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
Cited by: 24
Author(s): Galeb Abu-Ali, David W. Lacher, Lukas M. Wick, Weihong Qi, Thomas S. Whittam
Software Mentions: 1
Published: over 17 years ago

10.1038/s41598-020-76836-2

Similarities and differences between the ‘cytokine storms’ in acute dengue and COVID-19
Cited by: 23
Author(s): Shashika Dayarathna, Chandima Jeewandara, Laksiri Gomes, Gayasha Somathilaka, Deshni Jayathilaka, Vimalahan Vimalachandran, Ananda Wijewickrama, Eranga Narangoda, Damayanthi Idampitiya, Graham S. Ogg, Gathsaurie Neelika Malavige
Software Mentions: 1
Published: almost 6 years ago

10.3390/v8100286

Maporal Hantavirus Causes Mild Pathology in Deer Mice (Peromyscus maniculatus)
Cited by: 12
Author(s): Amanda L. McGuire, Kaitlyn Miedema, Joseph R. Fauver, Amber B. Rico, Tawfik Aboellail, Sandra L. Quackenbush, Ann Hawkinson, Tony Schountz
Software Mentions: 1
Published: almost 10 years ago

10.3390/nu10101510

Altered Dairy Protein Intake Does Not Alter Circulatory Branched Chain Amino Acids in Healthy Adults: A Randomized Controlled Trial
Cited by: 14
Author(s): Utpal Kumar Prodhan, Amber M. Milan, Eric B. Thorstensen, Matthew P. G. Barnett, Ralph Stewart, Jocelyne Benatar, David Cameron‐Smith
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-78484-y

Metabolomics analysis of plasma and adipose tissue samples from mice orally administered with polydextrose and correlations with cecal microbiota
Cited by: 7
Author(s): Markku Saarinen, Olli Kärkkäinen, Kati Hanhineva, Kirsti Tiihonen, Ashley A. Hibberd, Kari Mäkelä, Ghulam Shere Raza, Karl‐Heinz Herzig, Heli Anglenius
Software Mentions: 1
Published: over 5 years ago

10.1002/sctm.20-0199

Human induced pluripotent stem cell-derived lung organoids in an ex vivo model of the congenital diaphragmatic hernia fetal lung
Cited by: 21
Author(s): Shaun M. Kunisaki, Guihua Jiang, Juan Carlos Biancotti, Kenneth K. Y. Ho, Briana R. Dye, Allen Liu, Jason R. Spence
Software Mentions: 1
Published: almost 6 years ago

10.1111/acel.12379

Atypical antidepressants extend lifespan ofCaenorhabditis elegansby activation of a non‐cell‐autonomous stress response
Cited by: 17
Author(s): Sunitha Rangaraju, Gregory M. Solis, S. Andersson, Rafael L. Gomez‐Amaro, Rozina Kardakaris, Caroline D. Broaddus, Alexander B. Niculescu, Michael Petrascheck
Software Mentions: 1
Published: about 11 years ago

10.1186/s13046-020-01773-x

Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma
Cited by: 16
Author(s): Shejuan An, Jeannie M. Camarillo, Tai‐Chung Huang, Daphne Li, Juliette A. Morris, Madeline Zoltek, Jin Qi, Mandana Behbahani, Madhuri Kambhampati, Neil L. Kelleher, Javad Nazarian, Paul M. Thomas, Amanda Saratsis
Software Mentions: 1
Published: almost 6 years ago

10.1093/ve/vey009

The virome of Drosophila suzukii, an invasive pest of soft fruit
Cited by: 51
Author(s): Nathan Medd, Simon Fellous, Fergal M Waldron, Anne Xuéreb, M. Nakai, J. V. Cross, Darren J. Obbard
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-021-01946-2

Integrin alpha-V is an important driver in pancreatic adenocarcinoma progression
Cited by: 10
Author(s): Marius Kemper, Alina Schiecke, Hanna Maar, С. В. Никулин, Andrey Poloznikov, Vladimir Galatenko, Michael Tachezy, Florian Gebauer, Tobias Lange, Kristoffer Riecken, Alexander G. Tonevitsky, Achim Aigner, Jakob R. Izbicki, Udo Schumacher, Daniel Wicklein
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pntd.0007758

Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding
Cited by: 35
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-80937-3

The impact of smoking different tobacco types on the subgingival microbiome and periodontal health: a pilot study
Cited by: 12
Author(s): Sausan Al Kawas, Farah Al-Marzooq, Betul Rahman, Jenni A. Shearston, Hiba Saad, Dalenda Benzina, Michael Weitzman
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-2151-7

Comprehensive characterization of a time-course transcriptional response induced by autotoxins in Panax ginseng using RNA-Seq
Cited by: 23
Author(s): Bin Wu, Qiliang Long, Yuan Gao, Zi Wang, Tianwei Shao, Yanan Liu, Yong Li, Wanlong Ding
Software Mentions: 1
Published: almost 11 years ago

10.1084/jem.20170771

B1a B cells require autophagy for metabolic homeostasis and self-renewal
Cited by: 90
Author(s): Adam J. Clarke, Thomas Riffelmacher, Daniel Braas, Richard J. Cornall, Anna Katharina Simon
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-10-544

Differentially expressed genes for aggressive pecking behaviour in laying hens
Cited by: 21
Author(s): Bart Buitenhuis, Jakob Hedegaard, Luc Janss, Peter Sørensen
Software Mentions: 1
Published: over 17 years ago

10.3390/metabo9060105

Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains
Cited by: 8
Author(s): Diana Montes-Grajales, Nuria Esturau‐Escofet, Baldomero Esquivel, Esperanza Martínez‐Romero
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0182092

Quantitative proteomics in A30P*A53T α-synuclein transgenic mice reveals upregulation of Sel1l
Cited by: 8
Author(s): Jieyu Yan, Pei Zhang, Fengjuan Jiao, Qingzhi Wang, Feng He, Qian Zhang, Zheng Zhang, Ze-Xi Lv, Xiang Peng, Hongwei Cai, Bo Tian
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0052481

Primed Pluripotent Cell Lines Derived from Various Embryonic Origins and Somatic Cells in Pig
Cited by: 60
Author(s): Jin Kyu Park, Hye Sun Kim, Kyungjun Uh, Kwang‐Hwan Choi, Hyeong Min Kim, Taeheon Lee, Byung Chul Yang, Hyun Jong Kim, Hak Hyun Ka, Heebal Kim, Chang Kyu Lee
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0116915

SHBG Gene Polymorphism (rs1799941) Associates with Metabolic Syndrome in Children and Adolescents
Cited by: 7
Author(s): Marquitta J. White, Fatih Eren, Deniz Ağırbaşlı, Scott M. Williams, Mehmet Ağırbaşlı
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-021-81540-w

Photoperiodic regulation of dopamine signaling regulates seasonal changes in retinal photosensitivity in mice
Cited by: 7
Author(s): Kousuke Okimura, Yusuke Nakane, Taeko Nishiwaki‐Ohkawa, Takashi Yoshimura
Software Mentions: 1
Published: over 5 years ago

10.1093/gbe/evu181

Genomic Organization, Transcriptomic Analysis, and Functional Characterization of Avian α- and β-Keratins in Diverse Feather Forms
Cited by: 57
Author(s): Chen Siang Ng, Ping Wu, Wen‐Lang Fan, Jie Yan, Chih-Kuan Chen, Yu-Ting Lai, Siao-Man Wu, Chi-Tang Mao, Junjie Chen, Mei-Yeh Jade Lu, Meng‐Ru Ho, Randall B. Widelitz, Chih‐Feng Chen, Cheng‐Ming Chuong, Wen-Hsiung Li
Software Mentions: 1
Published: about 12 years ago

10.1186/s12864-018-5320-7

Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage
Cited by: 5
Author(s): Hyeon Seok Lee, Woon Ha Hwang, Jae Hyeok Jeong, Seung Hyeon Ahn, Jeong Seon Baek, Han Yong Jeong, Hong Kyu Park, Bon Il Ku, Jong Tak Yun, Geon Hwi Lee, Kyung San Choi
Software Mentions: 1
Published: over 7 years ago

10.1186/gm279

Classification of unknown primary tumors with a data-driven method based on a large microarray reference database
Cited by: 12
Author(s): K. Ojala, Sami Kilpinen, Olli Kallioniemi
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2164-10-200

Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation
Cited by: 98
Author(s): Hemant R. Kushwaha, Anil Kumar Singh, Sudhir K. Sopory, Sneh L. Singla‐Pareek, Ashwani Pareek
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0102949

Differences in Gene Expression between Mouse and Human for Dynamically Regulated Genes in Early Embryo
Cited by: 25
Author(s): Elo Madissoon, Virpi Töhönen, Liselotte Vesterlund, Shintaro Katayama, Per Unneberg, José Inzunza, Outi Hovatta, Juha Kere
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-13-359

The ribonuclease Dis3 is an essential regulator of the developmental transcriptome
Cited by: 32
Author(s): Dong Hou, Miriam Osés Ruiz, Erik D. Andrulis
Software Mentions: 1
Published: about 14 years ago

10.1002/stem.1991

Multipotent Caudal Neural Progenitors Derived from Human Pluripotent Stem Cells That Give Rise to Lineages of the Central and Peripheral Nervous System
Cited by: 78
Author(s): Mark Denham, Kouichi Hasegawa, Trevelyan R. Menheniott, Ben Rollo, Dongcheng Zhang, Shelley R. Hough, Abdullah J Alshawaf, Fabia Febbraro, Samiramis Ighaniyan, Joseph Y.-T. Leung, David A. Elliott, Donald F. Newgreen, Martín F. Pera, Mirella Dottori
Software Mentions: 1
Published: over 11 years ago

10.1186/s13073-017-0497-y

Integrated Bayesian analysis of rare exonic variants to identify risk genes for schizophrenia and neurodevelopmental disorders
Cited by: 78
Author(s): Hoang Nguyen, Julien Bryois, April Kim, Amanda Dobbyn, Laura Huckins, Ana B. Muñoz-Manchado, Douglas M. Ruderfer, Giulio Genovese, Menachem Fromer, Xiaowei Xu, Dalila Pinto, Sten Linnarsson, Matthijs Verhage, August B. Smit, Jens Hjerling-Leffler, Joseph D. Buxbaum, Christina M. Hultman, Pamela Sklar, Shaun Purcell, Kasper Lage, Xin He, Patrick F. Sullivan, Eli A. Stahl
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0226425

Genome-wide comparisons of gene expression in adult versus elderly burn patients
Cited by: 5
Author(s): Stephanie Dreckmann, Saeid Amini-Nik, Ronald G. Tompkins, Miliana Vojvodic, Marc G. Jeschke
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0036358

Wild Skylarks Seasonally Modulate Energy Budgets but Maintain Energetically Costly Inflammatory Immune Responses throughout the Annual Cycle
Cited by: 65
Author(s): Arne Hegemann, Kevin D. Matson, Maaike A. Versteegh, B. Irene Tieleman
Software Mentions: 1
Published: over 14 years ago

10.1155/2020/8816824

Clinicopathological and Molecular Characteristics of Pleomorphic Invasive Lobular Carcinoma
Cited by: 3
Author(s): Jennifer Segar, Ritu Pandey, Kiah Farr, Raymond B. Nagle, Lauren LeBeau, Victor Gonzalez, Pavani Chalasani
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0110076

Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia
Cited by: 63
Author(s): Petra Vídeňská, Masudur Rahman, Marcela Faldynová, Vladimír Babák, Marta Matulová, Estella Prukner‐Radovčić, Ivan Križek, Sonja Smole-Možina, Jasna Kovač, Ama Szmolka, Béla Nagy, Karel Sedlář, Darina Čejková, Ivan Rychlı́k
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12864-015-2258-x

Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes
Cited by: 69
Author(s): Zhihui Wang, Ke Cheng, Ling‐Shu Wan, Liying Yan, Huifang Jiang, Liu S, Yong Lei, Boshou Liao
Software Mentions: 1
Published: almost 11 years ago

10.1093/gigascience/giy124

Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads
Cited by: 19
Author(s): Ellie E. Armstrong, Ryan W. Taylor, Stefan Prost, Peter Blinston, Esther van der Meer, Hillary Madzikanda, Olivia Mufute, Roseline Mandisodza‐Chikerema, John Stuelpnagel, Claudio Sillero‐Zubiri, Dmitri A. Petrov
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0111267

Differential Expressions of the Alternatively Spliced Variant mRNAs of the µ Opioid Receptor Gene, OPRM1, in Brain Regions of Four Inbred Mouse Strains
Cited by: 32
Author(s): Jin Xu, Zhigang Lu, Mingming Xu, Grace C. Rossi, Benjamin Kest, Amanda R. Waxman, Gavril W. Pasternak, Ying–Xian Pan
Software Mentions: 1
Published: almost 12 years ago

10.1155/2019/5292787

Competitive Endogenous RNA Network Construction and Comparison of Lung Squamous Cell Carcinoma in Smokers and Nonsmokers
Cited by: 10
Author(s): Yan Yao, Tingting Zhang, Ling‐Yu Qi, Ruijuan Liu, Gongxi Liu, Xue Wang, Jie Li, Jia Li, Changgang Sun
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-016-0577-5

Genome-wide Escherichia coli stress response and improved tolerance towards industrially relevant chemicals
Cited by: 45
Author(s): Martin Holm Rau, Patricia Calero, Rebecca M. Lennen, Katherine S. Long, Alex Toftgaard Nielsen
Software Mentions: 1
Published: almost 10 years ago

10.1097/MD.0000000000011887

Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer
Cited by: 36
Author(s): Naiqiang Zhu, Jingyi Hou, Yuanhao Wu, Jinxin Liu, Geng Li, Wenjia Zhao, Guiyun Ma, Bin Chen, Youxin Song
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0150266

Biological Characterization of Gene Response to Insulin-Induced Hypoglycemia in Mouse Retina
Cited by: 6
Author(s): Martine Emery, Natacha Nanchen, Frédéric Preitner, Mark Ibberson, Raphaël Roduit
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0153476

Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster
Cited by: 11
Author(s): Sebald Johanna, Michaela Willi, Ines Schoberleitner, Anne Krogsdam, Dorothea Orth−Höller, Zlatko Trajanoski, Alexandra Lusser
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-019-5737-7

Comparative proteomic analysis of okra (Abelmoschus esculentus L.) seedlings under salt stress
Cited by: 36
Author(s): Yihua Zhan, Qingfei Wu, Yue Chen, Mengling Tang, Chendong Sun, Junwei Sun, Chenliang Yu
Software Mentions: 1
Published: over 7 years ago

10.3390/cells9041003

Sofosbuvir Activates EGFR-Dependent Pathways in Hepatoma Cells with Implications for Liver-Related Pathological Processes
Cited by: 9
Author(s): Denisa Bojkova, Sandra Westhaus, Rui Costa, Lejla Timmer, Nora Funkenberg, Marek Korencak, Hendrik Streeck, Florian W. R. Vondran, Ruth Broering, Stefan Heinrichs, Karl S. Lang, Sandra Ciesek
Software Mentions: 1
Published: over 6 years ago

10.3390/jof7090764

Variations in the Community Structure of Fungal Microbiota Associated with Apple Fruit Shaped by Fruit Bagging-Based Practice
Cited by: 1
Author(s): Punda Khwantongyim, Somying Wansee, Xi Lu, Wei Zhang, Guangyu Sun
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0004677

Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori
Cited by: 86
Author(s): Yong Zhang, Xue Zhou, Xie Ge, Jiang-Hao Jiang, Muwang Li, Shihai Jia, Xiaonan Yang, Yunchao Kan, Miao Xing, Guoping Zhao, Fēi Li, Yongping Huang
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0227575

The interoceptive hippocampus: Mouse brain endocrine receptor expression highlights a dentate gyrus (DG)–cornu ammonis (CA) challenge–sufficiency axis
Cited by: 12
Author(s): Richard Lathe, Sheena Singadia, Crispin Y. Jordan, Gernot Riedel
Software Mentions: 1
Published: over 6 years ago

10.3390/cells10061495

Phenotypic Characterization by Single-Cell Mass Cytometry of Human Intrahepatic and Peripheral NK Cells in Patients with Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuichi Yoshida, Sachiyo Yoshio, Taiji Yamazoe, Taizo Mori, Yuriko Tsustui, Hironari Kawai, Shiori Yoshikawa, Takasuke Fukuhara, Tomoyoshi Okamoto, Yoshihiro Ono, Yu Takahashi, Ryuki Hashida, Takumi Kawaguchi, Akinobu Taketomi, Tatsuya Kanto
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-015-2153-5

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
Cited by: 514
Author(s): Chandan Pal, Johan Bengtsson‐Palme, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 1
Published: almost 11 years ago

10.3390/cancers13143432

Characterization of Novel Progression Factors in Castration-Resistant Prostate Cancer Based on Global Comparative Proteome Analysis
Cited by: 4
Author(s): Ann-Yae Na, Sie−Young Choi, Eun‐Ju Yang, Kwang-Hyeon Liu, Sunghwan Kim, Hyun Jin Jung, Youngshik Choe, Yun‐Sok Ha, Tae Gyun Kwon, Jun Nyung Lee, Sangkyu Lee
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-94060-4

Observing the silent world under COVID-19 with a comprehensive impact analysis based on human mobility
Cited by: 8
Author(s): Shaobin Wang, Yun Tong, Yupeng Fan, Haimeng Liu, Jun Wu, Zheye Wang, Chuanglin Fang
Software Mentions: 1
Published: about 5 years ago

10.1186/s40249-021-00821-8

Gut microbiota signatures in Schistosoma japonicum infection-induced liver cirrhosis patients: a case–control study
Cited by: 11
Author(s): Qifeng Gui, Huilin Jin, Feng Zhu, Haifeng Lü, Qin Zhang, Jia Xu, Yunmei Yang, Chi Xiao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0061463

Shedding Light on the Microbial Community of the Macropod Foregut Using 454-Amplicon Pyrosequencing
Cited by: 29
Author(s): Lisa-Maree Gulino, D. Ouwerkerk, Alicia Kang, A. J. Maguire, Marco Kienzle, Athol V. Klieve
Software Mentions: 1
Published: over 13 years ago

10.3390/insects11080543

Functional Variation in Dipteran Gut Bacterial Communities in Relation to Their Diet, Life Cycle Stage and Habitat
Cited by: 12
Author(s): Rebekka Sontowski, Nicole M. van Dam
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-09439-z

α7 nicotinic acetylcholine receptor signaling modulates the inflammatory phenotype of fetal brain microglia: first evidence of interference by iron homeostasis
Cited by: 22
Author(s): Marina Farrel Cortês, Mingju Cao, H. L. Liu, Craig S. Moore, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Luis B. Barreiro, Jack P. Antel, Martin G. Frasch
Software Mentions: 1
Published: almost 9 years ago

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