cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/s13567-016-0392-3

Distinct functional enrichment of transcriptional signatures in pigs with high and low IFN-gamma responses after vaccination with a porcine reproductive and respiratory syndrome virus (PRRSV)
Cited by: 6
Author(s): Tahar Aït-Ali, Iván Díaz, Ferran Soldevila, Esmeralda Cano, Yanli Li, Alastair Wilson, Bruno Giotti, Alan Archibald, Enric Mateu, Laila Darwich
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13567-015-0224-x

phoP, SPI1, SPI2 and aroA mutants of Salmonella Enteritidis induce a different immune response in chickens
Cited by: 7
Author(s): Marta Elsheimer-Matulova, Karolína Varmužová, Kamila Kýrová, Hana Havlíčková, František Šišák, Masudur Rahman, Ivan Rychlı́k
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2407-10-227

Comprehensive profiling of DNA methylation in colorectal cancer reveals subgroups with distinct clinicopathological and molecular features
Cited by: 91
Author(s): Pei Woon Ang, Marie Loh, Natalia Liem, Pei Li Lim, Fabienne Grieu, Aparna Vaithilingam, Cameron Platell, Wei Peng Yong, Barry Iacopetta, Richie Soong
Software Mentions: 1
Published: over 16 years ago

10.1038/oncsis.2015.29

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing
Cited by: 57
Author(s): Maarten Neerincx, Daoud Sie, Mark A. van de Wiel, Nicole C.T. van Grieken, J. D. Burggraaf, Henk Dekker, Paul P. Eijk, Bauke Ylstra, Cornelis Verhoef, Gerrit A. Meijer, Tineke E. Buffart, Henk M.W. Verheul
Software Mentions: 1
Published: almost 11 years ago

10.1002/jia2.25655

Subtype‐specific differences in transmission cluster dynamics of HIV‐1 B and CRF01_AE in New South Wales, Australia
Cited by: 4
Author(s): Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Christine Selvey, Steven J. Nigro, Neil Fraser, Karen Price, Jo Holden, Frederick J. Lee, Dominic E. Dwyer, Benjamin R. Bavinton, Jemma L. Geoghegan, Andrew E. Grulich, Anthony D. Kelleher, Nsw Hiv Prevention Partnership
Software Mentions: 1
Published: over 5 years ago

10.1016/j.vaccine.2018.09.056

Antigenic and sequence variability of the human respiratory syncytial virus F glycoprotein compared to related viruses in a comprehensive dataset
Cited by: 30
Author(s): Vicente Más, Harish Nair, Harry Campbell, José A. Melero, Thomas C Williams
Software Mentions: 1
Published: almost 8 years ago

10.15252/msb.20145857

Systems‐level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry
Cited by: 27
Author(s): Vincy Wing Sze Ho, Ming Kin Wong, Xiaopeng An, Daogang Guan, Jiaofang Shao, Hon Chun Kaoru Ng, Xiaoliang Ren, Kan He, Jinyue Liao, Y U W Ang, Long Chen, Xiaotai Huang, Bin Yan, Yiji Xia, Leanne Lai Hang Chan, King Lau Chow, Hong Yan, Zhongying Zhao
Software Mentions: 1
Published: over 11 years ago

10.1186/ar3457

The gene expression profile of preclinical autoimmune arthritis and its modulation by a tolerogenic disease-protective antigenic challenge
Cited by: 8
Author(s): Hua Yu, Chi-Wei Lu, Ming Tan, Kamal D. Moudgil
Software Mentions: 1
Published: over 15 years ago

10.1093/mp/ssu109

Age-Triggered and Dark-Induced Leaf Senescence Require the bHLH Transcription Factors PIF3, 4, and 5
Cited by: 170
Author(s): Yi Song, Chuangwei Yang, Shan Gao, Wei Zhang, Lin Liu, Kálmán Benke
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12967-016-0855-3

Testing chemotherapy efficacy in HER2 negative breast cancer using patient-derived spheroids
Cited by: 37
Author(s): Kathrin Halfter, Oliver Hoffmann, Nina Ditsch, Mareike Ahne, Frank Arnold, Stefan Paepke, Dieter Grab, Ingo Bauerfeind, Barbara Mayer
Software Mentions: 1
Published: over 10 years ago

10.1002/mnfr.201900818

Lifestyle‐Intervention‐Induced Reduction of Abdominal Fat Is Reflected by a Decreased Circulating Glycerol Level and an Increased HDL Diameter
Cited by: 4
Author(s): Marian Beekman, Bianca A. M. Schutte, Erik B. van den Akker, Raymond Noordam, Petra Dibbets‐Schneider, Lioe‐Fee de Geus‐Oei, Joris Deelen, Ondine van de Rest, Diana van Heemst, Edith J. M. Feskens, P. Eline Slagboom
Software Mentions: 1
Published: over 6 years ago

10.3892/mmr.2015.3773

Identification of key transcription factors in caerulein-induced pancreatitis through expression profiling data
Cited by: 4
Author(s): Dachuan Qi, Bo Wu, Danian Tong, Ye Pan, Wei Chen
Software Mentions: 1
Published: over 11 years ago

10.3390/molecules26041128

A Significant Change in Free Amino Acids of Soybean (Glycine max L. Merr) through Ethylene Application
Cited by: 5
Author(s): Yeong Jun Ban, Yeong Hun Song, Jeong‐Yoon Kim, Joon Yung, Imdad Ali, Aizhamal Baiseitova, Abdul Bari Shah, Woe‐Yeon Kim, Ki Hun Park
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.43963

The ion channel ppk301 controls freshwater egg-laying in the mosquito Aedes aegypti
Cited by: 71
Author(s): Benjamin J. Matthews, Meg A Younger, Leslie B. Vosshall
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules25174001

Anti-Obesity and Gut Microbiota Modulation Effect of Secoiridoid-Enriched Extract from Fraxinus mandshurica Seeds on High-Fat Diet-Fed Mice
Cited by: 15
Author(s): Sheng Guo, Haoan Zhao, Zhengliang Ma, Shanshan Zhang, Mingrou Li, Zhou Zheng, Xiaolin Ren, Chi Tang Ho, Naisheng Bai
Software Mentions: 1
Published: almost 6 years ago

10.1186/1755-8166-7-8

Differences and homologies of chromosomal alterations within and between breast cancer cell lines: a clustering analysis
Cited by: 36
Author(s): Milena Rondón-Lagos, Ludovica Verdun di Cantogno, Caterina Marchiò, Nelson Rangel, César Payán‐Gómez, Patrizia Gugliotta, C. Botta, Gianni Bussolati, Sandra Ramírez-Clavijo, Barbara Pasini, Anna Sapino
Software Mentions: 1
Published: over 12 years ago

10.1186/s13075-019-2067-8

Unique primed status of microglia under the systemic autoimmune condition of lupus-prone mice
Cited by: 15
Author(s): Akihiro Nomura, Daisuke Noto, Goh Murayama, Asako Chiba, Sachiko Miyake
Software Mentions: 1
Published: almost 7 years ago

10.1186/1476-4598-9-303

Investigation of DNA damage response and apoptotic gene methylation pattern in sporadic breast tumors using high throughput quantitative DNA methylation analysis technology
Cited by: 33
Author(s): Ranjana Pal, Niraj Kumar Srivastava, Rupali Chopra, Sailesh Gochhait, Pawan Gupta, Neeraj Prakash, Gaurav Agarwal, R. Bamezai
Software Mentions: 1
Published: almost 16 years ago

10.3390/microorganisms9081689

Deciphering the Endophytic and Rhizospheric Microbial Communities of a Metallophyte Commelina communis in Different Cu-Polluted Soils
Cited by: 4
Author(s): Li He, Yi Ren, Weimin Zeng, Xueling Wu, Li Shen, Runlan Yu, Yuandong Liu, Jiaokun Li
Software Mentions: 1
Published: about 5 years ago

10.1002/mbo3.731

Comparative genomics of theKomagataeibacterstrains—Efficient bionanocellulose producers
Cited by: 47
Author(s): Małgorzata Ryngajłło, Katarzyna Kubiak, Marzena Jędrzejczak-Krzepkowska, Paulina Jacek, Stanisław Bielecki
Software Mentions: 1
Published: almost 8 years ago

10.1099/mgen.0.000066

First insight into the faecal microbiota of the high Arctic muskoxen (Ovibos moschatus)
Cited by: 17
Author(s): Alejandro Salgado-Flores, Mathias Bockwoldt, Live Heldal Hagen, Phillip B. Pope, Monica A. Sundset
Software Mentions: 1
Published: about 10 years ago

10.1099/mgen.0.000287

Co-existence of multiple distinct lineages in Vibrio parahaemolyticus serotype O4:K12
Cited by: 0
Author(s): Lin Zhao, Hongyou Chen, Xavier Didelot, Zhenpeng Li, Yinghui Li, Mei‐Ling Chen, Yu Du, Hongqun Zhao, Jie Li, Qinghua Hu, Biao Kan, Min Chen, Bo Pang
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.10479

Synthetic lethal genetic interactions between Rad54 and PARP-1 in mouse development and oncogenesis
Cited by: 2
Author(s): Mirella Tanori, Arianna Casciati, Francesco Berardinelli, Simona Leonardi, Emanuela Pasquali, Francesca Antonelli, Barbara Tanno, Paola Giardullo, Alessandro Pannicelli, Gabriele Babini, Ilaria De Stefano, Antonella Sgura, Mariateresa Mancuso, Anna Saran, Simonetta Pazzaglia
Software Mentions: 1
Published: about 10 years ago

10.1264/jsme2.ME20081

Comparative Analysis of Microbial Communities in Fronds and Roots of Three Duckweed Species: Spirodela polyrhiza, Lemna minor, and Lemna aequinoctialis
Cited by: 15
Author(s): Tomoki Iwashita, Yasuhiro Tanaka, Hideyuki Tamaki, Yasuko Yoneda, Ayaka Makino, Yuka Tateno, Li Yan, Tadashi Toyama, Yoichi Kamagata, Koji Mori
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-016-0577-5

Genome-wide Escherichia coli stress response and improved tolerance towards industrially relevant chemicals
Cited by: 45
Author(s): Martin Holm Rau, Patricia Calero, Rebecca M. Lennen, Katherine S. Long, Alex Toftgaard Nielsen
Software Mentions: 1
Published: almost 10 years ago

10.1111/1751-7915.13835

Blocking utilization of major plant biomass polysaccharides leads Aspergillusniger towards utilization of minor components
Cited by: 6
Author(s): Roland S. Kun, Sandra Garrigues, Marcos Di Falco, Adrian Tsang, Ronald P. de Vries
Software Mentions: 1
Published: about 5 years ago

10.3390/metabo11040227

Pinus pinaster Early Hormonal Defence Responses to Pinewood Nematode (Bursaphelenchus xylophilus) Infection
Cited by: 10
Author(s): Ana Margarida Rodrigues, Swen Langer, Isabel Carrasquinho, Edmund T. Bergström, Tony R. Larson, Jane Thomas‐Oates, Carla António
Software Mentions: 1
Published: over 5 years ago

10.1186/s13568-020-01101-8

Bacillus velezensis 83 a bacterial strain from mango phyllosphere, useful for biological control and plant growth promotion
Cited by: 31
Author(s): Karina A. Balderas-Ruíz, Patricia Bustos, Rosa I. Santamaría, Víctor González, Sergio Andrés Cristiano-Fajardo, Salvador Barrera‐Ortiz, Miriam Mezo-Villalobos, Sergio Aranda‐Ocampo, Angel Arturo Guevara‐García, Enrique Galindo, Leobardo Serrano‐Carreón
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo10120516

Exploratory Analysis of Commercial Olive-Based Dietary Supplements Using Untargeted and Targeted Metabolomics
Cited by: 2
Author(s): Mar Garcia-Aloy, Nelli Groff, Domenico Masuero, Mauro Nisi, Álvaro Junio Pereira Franco, Furio Battelini, Urška Vrhovšek, Fulvio Mattivi
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo10100383

5-CQA and Mangiferin, Two Leaf Biomarkers of Adaptation to Full Sun or Shade Conditions in Coffea arabica L.
Cited by: 4
Author(s): Teerarat Duangsodsri, Luc Villain, Ialy Rojo Vestalys, Serge Michalet, Cécile Abdallah, Jean‐Christophe Breitler, Mélanie Bordeaux, Andrés Mauricio Villegas, Marson Raherimandimby, Laurent Legendre, Hervé Etienne, Benoît Bertrand, Claudine Campa
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo9060105

Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains
Cited by: 8
Author(s): Diana Montes-Grajales, Nuria Esturau‐Escofet, Baldomero Esquivel, Esperanza Martínez‐Romero
Software Mentions: 1
Published: over 7 years ago

10.1097/MD.0000000000011887

Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer
Cited by: 36
Author(s): Naiqiang Zhu, Jingyi Hou, Yuanhao Wu, Jinxin Liu, Geng Li, Wenjia Zhao, Guiyun Ma, Bin Chen, Youxin Song
Software Mentions: 1
Published: about 8 years ago

10.3390/medicina57030218

Transcriptomics of Long-Term Meditation Practice: Evidence for Prevention or Reversal of Stress Effects Harmful to Health
Cited by: 7
Author(s): Supaya Wenuganen, Kenneth G. Walton, Shilpa Katta, Clifton L. Dalgard, Gauthaman Sukumar, Joshua Starr, Frederick Travis, Robert K. Wallace, Paul Morehead, Nancy K Lonsdorf, Meera Srivastava, John B. Fagan
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000893

Human G-MDSCs are neutrophils at distinct maturation stages promoting tumor growth in breast cancer
Cited by: 11
Author(s): Meliha Mehmeti-Ajradini, Caroline Bergenfelz, Anna-Maria Larsson, Robert Carlsson, Kristian Riesbeck, Jonas Ahl, Helena Janols, Marlene Wullt, Anders Bredberg, Eva Källberg, Fríða Björk Gunnarsdóttir, Camilla Rydberg Millrud, Lisa Rydén, Gesine Paul, Niklas Loman, Jörgen Adolfsson, Ana Carneiro, Karin Jirström, Fredrika Killander, Daniel Bexell, Karin Leandersson
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-021-02014-7

Metabolome analysis reveals a diversity of cancer tissues in advanced epithelial ovarian cancer
Cited by: 2
Author(s): Kosuke Yoshida, Nobuhisa Yoshikawa, Kazuhisa Kitami, Satoshi Tamauchi, Yoshiki Ikeda, Akira Yokoi, Kimihiro Nishino, Keiko Niimi, Hiroaki Kajiyama
Software Mentions: 1
Published: about 5 years ago

10.3390/nu12113252

Bilberry Anthocyanins Ameliorate NAFLD by Improving Dyslipidemia and Gut Microbiome Dysbiosis
Cited by: 33
Author(s): Hironobu Nakano, Shusong Wu, Kozue Sakao, Taichi Hara, Jianhua He, Santos García, Kalidas Shetty, De‐Xing Hou
Software Mentions: 1
Published: almost 6 years ago

10.1002/brb3.1086

Estriol-mediated neuroprotection in multiple sclerosis localized by voxel-based morphometry
Cited by: 21
Author(s): Allan MacKenzie-Graham, Jenny Brook, Florian Kurth, Yuichiro Itoh, Cassandra Meyer, Michael Montag, He-Jing Wang, Robert M. Elashoff, Rhonda R. Voskuhl
Software Mentions: 1
Published: about 8 years ago

10.1002/biot.201500550

Quantitative definition and monitoring of the host cell protein proteome using iTRAQ - a study of an industrial mAb producing CHO-S cell line
Cited by: 25
Author(s): Lesley M. Chiverton, Caroline Evans, Jagroop Pandhal, Andrew Landels, Byron Rees, Peter R. Levison, Phillip C. Wright, C. Mark Smales
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.22839

Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes
Cited by: 5
Author(s): Anna M. Palau, Anne-Kathrin Garz, Jeannine Diesch, Anabel Zwick, Roberto Malinverni, Vanesa Valero, Katrina M. Lappin, Raquel Casquero, Andreas Lennartsson, Johannes Zuber, Tomàs Navarro, Ken Mills, Katharina Götze, Marcus Buschbeck
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13068-019-1516-6

Amelioration of biomass and lipid in marine alga by an endophytic fungus Piriformospora indica
Cited by: 18
Author(s): Vipul Swarup Bhatnagar, Prasun Bandyopadhyay, Girish H. Rajacharya, Sudipta Sarkar, Krishna Mohan Poluri, Shashi Kumar
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.39981

Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1
Cited by: 26
Author(s): Terri M. Driessen, Jong Seo Lee, Janghoo Lim
Software Mentions: 1
Published: over 7 years ago

10.1186/s13068-019-1556-y

Myceliophthora thermophila Xyr1 is predominantly involved in xylan degradation and xylose catabolism
Cited by: 10
Author(s): Ana Carolina dos Santos Gomes, Daniel Luciano Falkoski, Evy Battaglia, Mao Peng, Maíra Nicolau de Almeida, Nancy Linares, Jean-Paul Meijnen, Jaap Visser, Ronald P. de Vries
Software Mentions: 1
Published: almost 7 years ago

10.3390/biom10091353

MiRNA Profiles of Extracellular Vesicles Secreted by Mesenchymal Stromal Cells—Can They Predict Potential Off-Target Effects?
Cited by: 13
Author(s): Timo Z. Nazari-Shafti, Sebastian Neuber, Ana G. Duran, Vasileios Exarchos, Christien Madlen Beez, Heike Meýborg, Katrin Krüger, Petra Wolint, Johanna Buschmann, R Böni, Martina Seifert, Volkmar Falk, Maximilian Y. Emmert
Software Mentions: 1
Published: almost 6 years ago

10.1093/gigascience/giy124

Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads
Cited by: 19
Author(s): Ellie E. Armstrong, Ryan W. Taylor, Stefan Prost, Peter Blinston, Esther van der Meer, Hillary Madzikanda, Olivia Mufute, Roseline Mandisodza‐Chikerema, John Stuelpnagel, Claudio Sillero‐Zubiri, Dmitri A. Petrov
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13073-017-0497-y

Integrated Bayesian analysis of rare exonic variants to identify risk genes for schizophrenia and neurodevelopmental disorders
Cited by: 78
Author(s): Hoang Nguyen, Julien Bryois, April Kim, Amanda Dobbyn, Laura Huckins, Ana B. Muñoz-Manchado, Douglas M. Ruderfer, Giulio Genovese, Menachem Fromer, Xiaowei Xu, Dalila Pinto, Sten Linnarsson, Matthijs Verhage, August B. Smit, Jens Hjerling-Leffler, Joseph D. Buxbaum, Christina M. Hultman, Pamela Sklar, Shaun Purcell, Kasper Lage, Xin He, Patrick F. Sullivan, Eli A. Stahl
Software Mentions: 1
Published: almost 9 years ago

10.1186/gm279

Classification of unknown primary tumors with a data-driven method based on a large microarray reference database
Cited by: 12
Author(s): K. Ojala, Sami Kilpinen, Olli Kallioniemi
Software Mentions: 1
Published: over 15 years ago

10.1093/gbe/evu181

Genomic Organization, Transcriptomic Analysis, and Functional Characterization of Avian α- and β-Keratins in Diverse Feather Forms
Cited by: 57
Author(s): Chen Siang Ng, Ping Wu, Wen‐Lang Fan, Jie Yan, Chih-Kuan Chen, Yu-Ting Lai, Siao-Man Wu, Chi-Tang Mao, Junjie Chen, Mei-Yeh Jade Lu, Meng‐Ru Ho, Randall B. Widelitz, Chih‐Feng Chen, Cheng‐Ming Chuong, Wen-Hsiung Li
Software Mentions: 1
Published: about 12 years ago

10.1155/2013/878956

Characteristics of Clinical Shiga Toxin-ProducingEscherichia coliIsolated from British Columbia
Cited by: 8
Author(s): Kevin Allen, Chad R. Laing, Ana Cancarevic, Yongxiang Zhang, Lili Rosana Mesak, Hai Xu, Ana Paccagnella, Victor P. J. Gannon, Linda Hoang
Software Mentions: 1
Published: over 13 years ago

10.1186/gb-2012-13-8-r71

A gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers
Cited by: 67
Author(s): Nathan Palmer, Patrick Raphael Schmid, Bonnie Berger, Isaac S. Kohane
Software Mentions: 1
Published: over 14 years ago

10.1534/genetics.117.203521

Toward Universal Forward Genetics: Using a Draft Genome Sequence of the Nematode Oscheius tipulae To Identify Mutations Affecting Vulva Development
Cited by: 17
Author(s): Fabrice Besnard, Georgios Koutsovoulos, Sana Dieudonné, Mark Blaxter, Marie Anne Félix
Software Mentions: 1
Published: about 9 years ago

10.1186/s12711-016-0184-2

Genetic architecture of fatty acid composition in the longissimus dorsi muscle revealed by genome-wide association studies on diverse pig populations
Cited by: 44
Author(s): Wanchang Zhang, Junjie Zhang, Leilei Cui, Junwu Ma, Congying Chen, Huashui Ai, Xianhua Xie, Li Lin, Shijun Xiao, Lusheng Huang, Jun Ren, Bin Yang
Software Mentions: 1
Published: over 10 years ago

10.1590/1678-4685-GMB-2019-0401

Skin transcriptional profiles in Oophaga poison frogs
Cited by: 1
Author(s): Andrés Posso‐Terranova, José Á. Andrés
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/5849323

Proteomic Analysis of Human Esophageal Cancer Using Tandem Mass Tag Quantifications
Cited by: 6
Author(s): Suofeng Sun, Huijuan Zhang, Yu Wang, Jing Gao, Shen Zhou, Yuan Li, Sun‐Young Han, Xiuling Li, Jian Li
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2017.01535

Insights on the Effects of Heat Pretreatment, pH, and Calcium Salts on Isolation of Rare Actinobacteria from Karstic Caves
Cited by: 48
Author(s): Bao‐Zhu Fang, Nimaichand Salam, Ming-Xian Han, Jian‐Yu Jiao, Juan Cheng, Du Wei, Min Xiao, Wenjun Li
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.00615

Gene Expression Profiling of Transcription Factors of Helicobacter pylori under Different Environmental Conditions
Cited by: 30
Author(s): Miguel A. De la Cruz, Miguel A. Ares, Kristine von Bargen, Leonardo G. Panunzi, Jessica Martínez-Cruz, Hilda‐Alicia Valdez‐Salazar, César Jiménez-Galicia, Javier Torres
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.02639

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature
Cited by: 21
Author(s): Guilherme Campos Tavares, Alex F. Carvalho, Felipe Luiz Pereira, Cristiana Perdigão Rezende, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.654783

Reactive Oxygen Species-Related Ceftazidime Resistance Is Caused by the Pyruvate Cycle Perturbation and Reverted by Fe3 + in Edwardsiella tarda
Cited by: 8
Author(s): Jingzhou Ye, Yubin Su, Xuan‐xian Peng, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s40249-021-00821-8

Gut microbiota signatures in Schistosoma japonicum infection-induced liver cirrhosis patients: a case–control study
Cited by: 11
Author(s): Qifeng Gui, Huilin Jin, Feng Zhu, Haifeng Lü, Qin Zhang, Jia Xu, Yunmei Yang, Chi Xiao
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.02300

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation
Cited by: 22
Author(s): Justin Wright, Veronica Kirchner, W. Bernard, Nikea Ulrich, Christopher J. McLimans, Maria Fernanda Campa, Terry C. Hazen, Tamzen W. Macbeth, David Marabello, Jacob McDermott, Rachel Mackelprang, Kimberly A. Roth, Regina Lamendella
Software Mentions: 1
Published: almost 9 years ago

10.3390/insects11080543

Functional Variation in Dipteran Gut Bacterial Communities in Relation to Their Diet, Life Cycle Stage and Habitat
Cited by: 12
Author(s): Rebekka Sontowski, Nicole M. van Dam
Software Mentions: 1
Published: about 6 years ago

10.1186/s13293-015-0044-8

Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish
Cited by: 74
Author(s): Hui Liu, Melissa S. Lamm, Kim Rutherford, Michael A. Black, John Godwin, Neil J. Gemmell
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2018.01244

Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade
Cited by: 17
Author(s): Μαρία Κάζου, Voula Alexandraki, Jochen Blom, Bruno Pot, Effie Tsakalidou, Konstantinos Papadimitriou
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2017.01534

Independent Shifts of Abundant and Rare Bacterial Populations across East Antarctica Glacial Foreland
Cited by: 24
Author(s): Wenkai Yan, Hongmei Ma, Guitao Shi, Yuansheng Li, Bo Sun, Xiang Xiao, Yu Zhang
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2020.585614

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea
Cited by: 9
Author(s): Yang Xu, Xiaoxia Li, Wenxing Liang, Mengjie Liu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.00659

The Anti-Adhesive Effect of Curcumin on Candida albicans Biofilms on Denture Materials
Cited by: 56
Author(s): Hasanain K. A. Alalwan, Ranjith Rajendran, David F. Lappin, Emilie Combet, Muhammad Shahzad, Douglas Robertson, Christopher J. Nile, Craig Williams, Gordon Ramage
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.01970

Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production
Cited by: 60
Author(s): Julia Hofmann, Andreas Otto, Mareike Berges, Rebekka Biedendieck, Annika-Marisa Michel, Dörte Becher, Dieter Jahn, Meina Neumann‐Schaal
Software Mentions: 1
Published: about 8 years ago

10.1172/jci.insight.143379

Brd4 modulates diet-induced obesity via PPARγ-dependent Gdf3 expression in adipose tissue macrophages
Cited by: 10
Author(s): Xiangming Hu, Xingchen Dong, Li Guo, Yanheng Chen, Jinjing Chen, Xian He, Hao Sun, Dong-Hyun Kim, Jongsook Kim Kemper, Linfeng Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.02056

1-Methyltryptophan Modifies Apoplast Content in Tomato Plants Improving Resistance Against Pseudomonas syringae
Cited by: 6
Author(s): Loredana Scalschi, Eugenio Llorens, Ana Isabel González-Hernández, M. Valcárcel, Jordi Gamir, Pilar García‐Agustín, Begonya Vicedo, Gemma Camañes
Software Mentions: 1
Published: about 8 years ago

10.1172/jci.insight.150114

Lipin 1 modulates mRNA splicing during fasting adaptation in liver
Cited by: 4
Author(s): Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2018.00099

iTRAQ-Based Comparative Proteomic Analysis of Adult Schistosoma japonicum from Water Buffalo and Yellow Cattle
Cited by: 13
Author(s): Qixiao Zhai, Zhiqiang Fu, Yang Hong, Xianjun Yu, Qian Han, Lu Ke, Hao Li, Xuefeng Dou, Chuangang Zhu, Jinming Liu, Jiaojiao Lin, Guoqing Li
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-015-0605-y

Altered microRNAs expression profiling in cumulus cells from patients with polycystic ovary syndrome
Cited by: 48
Author(s): Suying Liu, Xuan Zhang, Changgen Shi, Jimin Lin, Guowu Chen, Bin Wu, Ligang Wu, Huijuan Shi, Yuan Yao, Weijin Zhou, Zilong Sun, Xi Dong, Jian Wang
Software Mentions: 1
Published: about 11 years ago

10.1074/jbc.M114.562389

The Nuclear Localization of γ-Tubulin Is Regulated by SadB-mediated Phosphorylation
Cited by: 23
Author(s): Greta Eklund, Stefan Lang, Johan Glindre, Åsa Ehlén, María Alvarado-Kristensson
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2016.00551

Diel Variation in Gene Expression of the CO2-Concentrating Mechanism during a Harmful Cyanobacterial Bloom
Cited by: 26
Author(s): Giovanni Sandrini, Robert P. Tann, J. Merijn Schuurmans, S.A.M. van Beusekom, H.C.P. Matthijs, Jef Huisman
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2020.01458

The Microbiome of Posidonia oceanica Seagrass Leaves Can Be Dominated by Planctomycetes
Cited by: 37
Author(s): Timo Kohn, Patrick Rast, Nicolai Kallscheuer, Sandra Wiegand, Christian Boedeker, Mike S. M. Jetten, Olga Jeske, John Vollmers, Anne‐Kristin Kaster, Manfred Rohde, Mareike Jogler, Christian Jogler
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2017.00369

Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress
Cited by: 108
Author(s): Patricia Hingston, Jessica Chen, Bhavjinder K. Dhillon, Chad R. Laing, Claire Bertelli, Victor P. J. Gannon, Taurai Tasara, Kevin Allen, Fiona S. L. Brinkman, Lisbeth Truelstrup Hansen, Siyun Wang
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.03138

Dynamics of Gut Microbiome in Giant Panda Cubs Reveal Transitional Microbes and Pathways in Early Life
Cited by: 25
Author(s): Min Guo, Jianwei Chen, Qiongfang Li, Ying Fu, Guangyi Fan, Jinmin Ma, Ling Peng, Liyun Zeng, Jing Chen, Yayu Wang, Simon Ming‐Yuen Lee
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.00568

Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region
Cited by: 93
Author(s): Katarzyna Siegel-Hertz, Véronique Edel-Hermann, Emilie Chapelle, Sébastien Terrat, Jos M. Raaijmakers, Christian Steinberg
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2016.01892

Waste Conversion into n-Caprylate and n-Caproate: Resource Recovery from Wine Lees Using Anaerobic Reactor Microbiomes and In-line Extraction
Cited by: 96
Author(s): Leo A. Kucek, Jiajie Xu, Mytien Nguyen, Largus T. Angenent
Software Mentions: 1
Published: almost 10 years ago

10.3389/fimmu.2020.01474

Nicotine Changes the microRNA Profile to Regulate the FOXO Memory Program of CD8+ T Cells in Rheumatoid Arthritis
Cited by: 9
Author(s): Caroline Wasén, Caroline Ospelt, Alessandro Camponeschi, Malin C. Erlandsson, Karin Andersson, Sofia Töyrä Silfverswärd, Maria Bokarewa
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2019.01229

Differential Proinflammatory Signature in Vestibular Migraine and Meniere Disease
Cited by: 50
Author(s): Marisa Flook, Lidia Frejo, Alvaro Gallego‐Martinez, Eduardo Martín-Sanz, Marcos Rossi-Izquierdo, Juan Carlos Amor-Dorado, Andrés Soto-Varela, Sofía Santos-Pérez, Ángel Batuecas‐Caletrío, Juan Manuel Espinosa-Sánchez, Patricia Pérez-Carpena, Marta Martínez-Martínez, Ismael Arán, José A. Lopez-Escamez
Software Mentions: 1
Published: about 7 years ago

10.1242/bio.20148193

Autocrine Activation of the Wnt/β-Catenin Pathway by CUX1 and GLIS1 in Breast Cancers
Cited by: 34
Author(s): Charles Vadnais, Peiman Shooshtarizadeh, Charles V. Rajadurai, Robert Lesurf, Laura Hulea, Sayeh Davoudi, C. Linn Cadieux, Michael Hallett, Morag Park, Alain Nepveu
Software Mentions: 1
Published: almost 12 years ago

10.1111/jcmm.12819

Micro <scp>RNA</scp> expression profile of human periodontal ligament cells under the influence of Porphyromonas gingivalis <scp>LPS</scp>
Cited by: 37
Author(s): Anqing Du, Sen Zhao, Lingyun Wan, TianTao Liu, Zaoxia Peng, Ziyu Zhou, Zhengyu Liao, Huan Fang
Software Mentions: 1
Published: over 10 years ago

10.3389/fimmu.2019.02866

Clostridioides difficile Colonization Is Differentially Associated With Gut Microbiome Profiles by Infant Feeding Modality at 3–4 Months of Age
Cited by: 20
Author(s): Kelsea M. Drall, Hein Min Tun, Nadia Morales-Lizcano, Theodore Konya, David S. Guttman, Catherine J. Field, Rupasri Mandal, David S. Wishart, Allan B. Becker, Meghan B. Azad, Diana L. Lefebvre, Piush J. Mandhane, Theo J. Moraes, Malcolm R. Sears, Stuart E. Turvey, Padmaja Subbarao, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.559925

Immunological Hallmarks of Inflammatory Status in Vaso-Occlusive Crisis of Sickle Cell Anemia Patients
Cited by: 10
Author(s): Alexander Leonardo Silva-Junior, Nadja Pinto Garcia, Evilázio Cunha Cardoso, S Dias, Andréa Monteiro Tarragô, Nelson Abrahim Fraiji, Marcos Antônio Silvestre Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Erich Vinícius De Paula, Allyson Guimarães Costa, Adriana Malheiro
Software Mentions: 1
Published: over 5 years ago

10.3897/BDJ.9.e60980

Patterns of richness, diversity and abundance of an odonate assemblage from a tropical dry forest in the Santiago Dominguillo Region, Oaxaca, México (Insecta: Odonata)
Cited by: 0
Author(s): Enrique González-Soriano, Felipe A. Noguera, Cisteil X. Pérez-Hernández, Santiago Zaragoza‐Caballero, Leonardo González-Valencia
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.590121

Maturation of Monocyte-Derived DCs Leads to Increased Cellular Stiffness, Higher Membrane Fluidity, and Changed Lipid Composition
Cited by: 21
Author(s): Jennifer J. Lühr, Nils Alex, Lukas Amon, Martin Kräter, Markéta Kubánková, Erdinç Sezgin, Christian Lehmann, Lukas Heger, Gordon F. Heidkamp, Ana‐Sunčana Smith, Vasily Zaburdaev, Rainer A. Böckmann, Ilya Levental, Michael L. Dustin, Christian Eggeling, Jochen Guck, Diana Dudziak
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2019.02633

Constitutive Activation of Natural Killer Cells in Primary Biliary Cholangitis
Cited by: 12
Author(s): Theresa Hydes, Matthew D. Blunt, Jennifer Naftel, Andrés F. Vallejo, Grégory Seumois, Alice Wang, Pandurangan Vijayanand, Marta E. Polak, Salim I. Khakoo
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12917-017-1157-6

OmpA protein sequence-based typing and virulence-associated gene profiles of Pasteurella multocida isolates associated with bovine haemorrhagic septicaemia and porcine pneumonic pasteurellosis in Thailand
Cited by: 5
Author(s): Teerasak E-kobon, Ratiporn Leeanan, Saengtian Pannoi, Pornchai Anuntasomboon, Pacharee Thongkamkoon, Arinthip Thamchaipenet
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18040751

Exploring the Genetic Resistance to Gastrointestinal Nematodes Infection in Goat Using RNA-Sequencing
Cited by: 20
Author(s): Ali Akbar Bhuiyan, Jingjin Li, Zhenyang Wu, Peihong Ni, Adeyinka Abiola Adetula, Haiyan Wang, Cheng Zhang, Xiaohui Tang, Anjuman Ara Bhuyan, Zhao Song, Xiaoyong Du
Software Mentions: 1
Published: over 9 years ago

10.1128/JCM.00881-16

Resolution of a Protracted Serogroup B Meningococcal Outbreak with Whole-Genome Sequencing Shows Interspecies Genetic Transfer
Cited by: 11
Author(s): Robert M. Mulhall, Carina Brehony, Lois O’Connor, Kenneth Meyler, Keith A. Jolley, James E. Bray, Désirée E. Bennett, Martin Maiden, Robert Cunney
Software Mentions: 1
Published: almost 10 years ago

10.3389/fimmu.2018.02545

Identification of CVID Patients With Defects in Immune Repertoire Formation or Specification
Cited by: 22
Author(s): Pauline A. van Schouwenburg, Hanna IJspeert, Ingrid Pico-Knijnenburg, Virgil A. S. H. Dalm, P. Martin van Hagen, David van Zessen, Andrew Stubbs, Smita Y. Patel, Mirjam van der Burg
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2018.00704

One-Year Follow-Up of Natural Killer Cell Activity in Multiple Myeloma Patients Treated With Adjuvant Lenalidomide Therapy
Cited by: 14
Author(s): Laurie Besson, Emily Charrier, Lionel Karlin, Omran Allatif, Antoine Marçais, Paul Rouzaire, Lucie Belmont, Michel Attal, Christine Lombard, Gilles Salles, Thierry Walzer, Sébastien Viel
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2021.638020

The First Contact of Human Dendritic Cells With Trypanosoma cruzi Reveals Response to Virus as an Unexplored Central Pathway
Cited by: 2
Author(s): Natalia Gil-Jaramillo, Amanda Pereira Rocha, Tainá Raiol, Flávia Nader Motta, Cecília Favali, Marcelo M. Brígido, Izabela Marques Dourado Bastos, Jaime M. Santana
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2018.00744

CLEC10A Is a Specific Marker for Human CD1c+ Dendritic Cells and Enhances Their Toll-Like Receptor 7/8-Induced Cytokine Secretion
Cited by: 86
Author(s): Lukas Heger, Silke Balk, Jennifer J. Lühr, Gordon F. Heidkamp, Christian Lehmann, Lukas Hatscher, Ariawan Purbojo, Arndt Hartmann, Fayna García-Martín, Shin‐Ichiro Nishimura, Robert Cesnjevar, Falk Nimmerjahn, Diana Dudziak
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.23406

Menopause and adipose tissue: miR-19a-3p is sensitive to hormonal replacement
Cited by: 22
Author(s): Reeta Kangas, Cristina Morsiani, G Pizza, Catia Lanzarini, Pauliina Aukee, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Eija K. Laakkonen, Miriam Capri
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2017.02004

Monocytes Differentiate to Immune Suppressive Precursors of Metastasis-Associated Macrophages in Mouse Models of Metastatic Breast Cancer
Cited by: 113
Author(s): Takanori Kitamura, Dahlia Doughty-Shenton, Luca Cassetta, Stamatina Fragkogianni, Demi Brownlie, Yu Kato, Neil O. Carragher, Jeffrey W. Pollard
Software Mentions: 1
Published: over 8 years ago

10.1128/AEM.01993-19

Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
Cited by: 54
Author(s): Nikola Palevich, William J. Kelly, Sinead C. Leahy, Stuart E. Denman, Eric Altermann, Jasna Rakonjac, Graeme T. Attwood
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.633756

EZH2-Mediated microRNA-375 Upregulation Promotes Progression of Breast Cancer via the Inhibition of FOXO1 and the p53 Signaling Pathway
Cited by: 19
Author(s): Xin Guan, Aiping Shi, Yabin Zou, Meiyang Sun, Yue Zhan, Yi Dong, Zhimin Fan
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00873

Dissecting the Molecular Function of Triticum aestivum STI Family Members Under Heat Stress
Cited by: 10
Author(s): Shaloo Meena, Sohini Deb, Harsha Samtani, Paramjit Khurana
Software Mentions: 1
Published: about 6 years ago

10.1093/aobpla/plw051

Reproductive traits affect the rescue of valuable and endangered multipurpose tropical trees
Cited by: 4
Author(s): Viviane C.O. Sinébou, Muriel Quinet, B. C. Ahohuendo, Anne‐Laure Jacquemart
Software Mentions: 1
Published: about 11 years ago

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Papers Mentioning gplots 2,122