cran: gplots | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-56396-w

The host generalist phytopathogenic fungus Sclerotinia sclerotiorum differentially expresses multiple metabolic enzymes on two different plant hosts
Cited by: 19
Author(s): Jefferson Allan, Roshan Regmi, Matthew Denton‐Giles, Lars G. Kamphuis, Mark Derbyshire
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-56918-6

Population-specific signatures of intra-individual mitochondrial DNA heteroplasmy and their potential evolutionary advantages
Cited by: 11
Author(s): Yaron Tikochinski, Carlos Carreras, Gili Tikochinski, Sibelle Torres Vilaça
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0224211

Skewed T cell responses to Epstein-Barr virus in long-term asymptomatic kidney transplant recipients
Cited by: 4
Author(s): Cecilia Nakid-Cordero, Nadia Arzouk, Nicolas Gauthier, Nadine Tarantino, Martin Larsen, Sylvain Choquet, Sonia Burrel, Brigitte Autran, Vincent Vieillard, Amélie Guihot
Software Mentions: 1
Published: almost 7 years ago

10.1002/path.5373

Clinicopathological and molecular characterisation of ‘multiple‐classifier’ endometrial carcinomas
Cited by: 169
Author(s): Alicia León‐Castillo, Ester Gilvazquez, Remi A. Nout, Vincent T.H.B.M. Smit, Jessica N. McAlpine, Melissa K. McConechy, Stefan Kommoss, Sara Brucker, Joseph W. Carlson, Elisabeth Epstein, Tilman T. Rau, Robert A. Soslow, Raji Ganesan, Xavier Matías‐Guiu, Esther Oliva, Beth T. Harrison, David N. Church, C. Blake Gilks, Tjalling Bosse
Software Mentions: 1
Published: over 6 years ago

10.1186/1476-4598-9-303

Investigation of DNA damage response and apoptotic gene methylation pattern in sporadic breast tumors using high throughput quantitative DNA methylation analysis technology
Cited by: 33
Author(s): Ranjana Pal, Niraj Kumar Srivastava, Rupali Chopra, Sailesh Gochhait, Pawan Gupta, Neeraj Prakash, Gaurav Agarwal, R. Bamezai
Software Mentions: 1
Published: almost 16 years ago

10.3390/ijms20071691

Dynamic TMT-Based Quantitative Proteomics Analysis of Critical Initiation Process of Totipotency during Cotton Somatic Embryogenesis Transdifferentiation
Cited by: 12
Author(s): Haixia Guo, Huihui Guo, Li Zhang, Yijie Fan, Yuhang Fan, Zhengmin Tang, Fanchang Zeng
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0218630

Differential immune gene response in gills, skin, and spleen of rainbow trout Oncorhynchus mykiss infected by Ichthyophthirius multifiliis
Cited by: 23
Author(s): Khairul Syahputra, Per W. Kania, Azmi Al‐Jubury, Huria Marnis, Agung Cahyo Setyawan, Kurt Buchmann
Software Mentions: 1
Published: about 7 years ago

10.1186/s40478-016-0364-x

Telomere shortening leads to an acceleration of synucleinopathy and impaired microglia response in a genetic mouse model
Cited by: 35
Author(s): Annika Scheffold, Inge R. Holtman, Sandra Dieni, Nieske Brouwer, Sarah‐Fee Katz, Billy Michael Chelliah Jebaraj, Philipp J. Kahle, Bastian Hengerer, André Lechel, Stephan Stilgenbauer, Erik Boddeke, Bart J. L. Eggen, K. Lenhard Rudolph, Knut Biber
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2018.02639

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature
Cited by: 21
Author(s): Guilherme Campos Tavares, Alex F. Carvalho, Felipe Luiz Pereira, Cristiana Perdigão Rezende, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.654783

Reactive Oxygen Species-Related Ceftazidime Resistance Is Caused by the Pyruvate Cycle Perturbation and Reverted by Fe3 + in Edwardsiella tarda
Cited by: 8
Author(s): Jingzhou Ye, Yubin Su, Xuan‐xian Peng, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-016-0762-z

Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes
Cited by: 18
Author(s): Melisha R. Kenedy, Edgar J. Scott, Binu Shrestha, Asha Anand, Henna Iqbal, Justin D. Radolf, David W. Dyer, Darrin R. Akins
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.16320

Targeting the PIM protein kinases for the treatment of a T-cell acute lymphoblastic leukemia subset
Cited by: 32
Author(s): Megha Padi, Libia A. Luevano, Ningfei An, Ritu Pandey, Neha Singh, Jin H. Song, Jon C. Aster, Xue-Zhong Yu, Shikhar Mehrotra, Andrew S. Kraft
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-59666-0

Analysis of inflammatory mediators in the vitreous humor of eyes with pan-uveitis according to aetiological classification
Cited by: 20
Author(s): Hisako Fukunaga, Toshikatsu Kaburaki, Shintaro Shirahama, Rie Tanaka, Hiroshi Murata, Tomohito Sato, Masaru Takeuchi, Hideto Tozawa, Yoshihiro Urade, Mari Katsura, Mika Kobayashi, Youichiro Wada, Hirotsugu Soga, Hidetoshi Kawashima, Takahide Kohro, Makoto Aihara
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.00615

Gene Expression Profiling of Transcription Factors of Helicobacter pylori under Different Environmental Conditions
Cited by: 30
Author(s): Miguel A. De la Cruz, Miguel A. Ares, Kristine von Bargen, Leonardo G. Panunzi, Jessica Martínez-Cruz, Hilda‐Alicia Valdez‐Salazar, César Jiménez-Galicia, Javier Torres
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.01535

Insights on the Effects of Heat Pretreatment, pH, and Calcium Salts on Isolation of Rare Actinobacteria from Karstic Caves
Cited by: 48
Author(s): Bao‐Zhu Fang, Nimaichand Salam, Ming-Xian Han, Jian‐Yu Jiao, Juan Cheng, Du Wei, Min Xiao, Wenjun Li
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0062483

ARID1A Alterations Are Associated with FGFR3-Wild Type, Poor-Prognosis, Urothelial Bladder Tumors
Cited by: 53
Author(s): Cristina Balbás-Martínez, María Rodríguez-Pinilla, Ariel Casanova, Orlando Domı́nguez, David G. Pisano, Gonzalo Vázquez Gómez, Josep Lloreta, José A. Lorente, Núria Malats, Francisco X. Real
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0012103

Tumorigenic WAP-T Mouse Mammary Carcinoma Cells: A Model for a Self-Reproducing Homeostatic Cancer Cell System
Cited by: 22
Author(s): Florian Wegwitz, Mark-Andreas Kluth, Claudia Mänz, Benjamin Otto, Katharina Gruner, Christina Heinlein, Marion Kühl, Gabriele Warnecke, Udo Schumacher, Wolfgang Deppert, Genrich V. Tolstonog
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pbio.3000660

HIV-1 Tat-mediated astrocytic amyloidosis involves the HIF-1α/lncRNA BACE1-AS axis
Cited by: 24
Author(s): Susmita Sil, Guoku Hu, Ke Liao, Fang Niu, Shannon Callen, Palsamy Periyasamy, Howard S. Fox, Shilpa Buch
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12082238

Ginseng-Induced Changes to Blood Vessel Dilation and the Metabolome of Rats
Cited by: 9
Author(s): Hyeon-Jeong Lee, Bomin Kim, Soo Hee Lee, Ju-Tae Sohn, Jae Woong Choi, Chang‐Won Cho, Hee‐Do Hong, Young Kyoung Rhee, Hyun‐Jin Kim
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0035659

Proteome-Wide Analysis of Functional Divergence in Bacteria: Exploring a Host of Ecological Adaptations
Cited by: 16
Author(s): Brian E. Caffrey, Tom A. Williams, Xiaowei Jiang, Christina Toft, Karsten Hokamp, Mario A. Fares
Software Mentions: 1
Published: over 14 years ago

10.3389/fmicb.2017.02300

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation
Cited by: 22
Author(s): Justin Wright, Veronica Kirchner, W. Bernard, Nikea Ulrich, Christopher J. McLimans, Maria Fernanda Campa, Terry C. Hazen, Tamzen W. Macbeth, David Marabello, Jacob McDermott, Rachel Mackelprang, Kimberly A. Roth, Regina Lamendella
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2018.01244

Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade
Cited by: 17
Author(s): Μαρία Κάζου, Voula Alexandraki, Jochen Blom, Bruno Pot, Effie Tsakalidou, Konstantinos Papadimitriou
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0022548

Stage-Specific Histone Modification Profiles Reveal Global Transitions in the Xenopus Embryonic Epigenome
Cited by: 38
Author(s): Tobias D. Schneider, José M. Arteaga-Salas, Edith Mentele, Róbert Dávid, Dario Nicetto, Axel Imhof, Ralph A.W. Rupp
Software Mentions: 1
Published: about 15 years ago

10.1186/s12866-015-0610-6

Liver and blood cytokine microenvironment in HCV patients is associated to liver fibrosis score: a proinflammatory cytokine ensemble orchestrated by TNF and tuned by IL-10
Cited by: 32
Author(s): Soriane de Souza-Cruz, Marilú Barbieri Victória, Andréa Monteiro Tarragô, Allyson Guimarães Costa, João Paulo Diniz Pimentel, Ericka Florêncio Pires, Lorene de Paula Araújo, Jordana Grazziela Alves Coelho-dos-Reis, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Flamir da Silva Victória, Adriana Malheiro
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2017.01534

Independent Shifts of Abundant and Rare Bacterial Populations across East Antarctica Glacial Foreland
Cited by: 24
Author(s): Wenkai Yan, Hongmei Ma, Guitao Shi, Yuansheng Li, Bo Sun, Xiang Xiao, Yu Zhang
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.01459

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica
Cited by: 27
Author(s): Maria Hoffmann, James B. Pettengill, Narjol González-Escalona, John N. Miller, Sherry Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0148682

Evaluating the Metal Tolerance Capacity of Microbial Communities Isolated from Alberta Oil Sands Process Water
Cited by: 8
Author(s): Mathew L. Frankel, Marc A. Demeter, Joe Lemire, Raymond J. Turner
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-11-332

Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Cited by: 142
Author(s): Luis David Alcaraz, Gabriel Moreno‐Hagelsieb, Luis E. Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0137354

Comparative “-omics” in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors
Cited by: 44
Author(s): María Lluch‐Senar, Luca Cozzuto, Jaime Cano, Javier Delgado, Verónica Lloréns‐Rico, Sabine Pereyre, Cécile Bébéar, Luís Serrano
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2020.585614

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea
Cited by: 9
Author(s): Yang Xu, Xiaoxia Li, Wenxing Liang, Mengjie Liu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.00659

The Anti-Adhesive Effect of Curcumin on Candida albicans Biofilms on Denture Materials
Cited by: 56
Author(s): Hasanain K. A. Alalwan, Ranjith Rajendran, David F. Lappin, Emilie Combet, Muhammad Shahzad, Douglas Robertson, Christopher J. Nile, Craig Williams, Gordon Ramage
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2021.619711

Soil Disturbance Affects Plant Productivity via Soil Microbial Community Shifts
Cited by: 7
Author(s): Taylor J. Seitz, Ursel M. E. Schütte, Devin M. Drown
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.01970

Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production
Cited by: 60
Author(s): Julia Hofmann, Andreas Otto, Mareike Berges, Rebekka Biedendieck, Annika-Marisa Michel, Dörte Becher, Dieter Jahn, Meina Neumann‐Schaal
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pntd.0004302

Phenotypic Features of Circulating Leukocytes from Non-human Primates Naturally Infected with Trypanosoma cruzi Resemble the Major Immunological Findings Observed in Human Chagas Disease
Cited by: 12
Author(s): Renato Sathler-Avelar, Danielle Marquete Vitelli-Avelar, Armanda Moreira Mattoso-Barbosa, Marcelo Perdigão-de-Oliveira, Ronaldo Peres Costa, Silvana Maria Elói-Santos, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Edward J. Dick, Gene B. Hubbard, Jane F. VandeBerg, John L. VandeBerg
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-10-296

Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
Cited by: 24
Author(s): Galeb Abu-Ali, David W. Lacher, Lukas M. Wick, Weihong Qi, Thomas S. Whittam
Software Mentions: 1
Published: over 17 years ago

10.3389/fmicb.2018.02056

1-Methyltryptophan Modifies Apoplast Content in Tomato Plants Improving Resistance Against Pseudomonas syringae
Cited by: 6
Author(s): Loredana Scalschi, Eugenio Llorens, Ana Isabel González-Hernández, M. Valcárcel, Jordi Gamir, Pilar García‐Agustín, Begonya Vicedo, Gemma Camañes
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12866-021-02125-1

Dysbiosis of gut microbiota and its correlation with dysregulation of cytokines in psoriasis patients
Cited by: 32
Author(s): Xinyue Zhang, Lingfei Shi, Ting Sun, Kun Guo, Shuang Geng
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.00099

iTRAQ-Based Comparative Proteomic Analysis of Adult Schistosoma japonicum from Water Buffalo and Yellow Cattle
Cited by: 13
Author(s): Qixiao Zhai, Zhiqiang Fu, Yang Hong, Xianjun Yu, Qian Han, Lu Ke, Hao Li, Xuefeng Dou, Chuangang Zhu, Jinming Liu, Jiaojiao Lin, Guoqing Li
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-62664-x

Transcriptomic features of tumour-infiltrating CD4lowCD8high double positive αβ T cells in melanoma
Cited by: 14
Author(s): Tiphaine Parrot, Romain Oger, Mathilde Allard, Juliette Desfrançois, Diane Raingeard de la Blétière, Anne Coutolleau, Laurence Preisser, Amir Khammari, Brigitte Dréno, Yves Delneste, Philippe Guardiola, Delphine Fradin, Nadine Gervois
Software Mentions: 1
Published: over 6 years ago

10.3389/fnmol.2013.00049

Genome-wide assessment of post-transcriptional control in the fly brain
Cited by: 8
Author(s): Shaul Mezan, Reut Ashwal-Fluss, Rom Shenhav, Manuel Garber, Sebastián Kadener
Software Mentions: 1
Published: over 13 years ago

10.3389/fnmol.2021.665931

Transcriptome Analysis Reveals the Role of Cellular Calcium Disorder in Varicella Zoster Virus-Induced Post-Herpetic Neuralgia
Cited by: 13
Author(s): Songbin Wu, Shaomin Yang, Mingxi Ou, Jiamin Chen, Jinbo Huang, Dehua Xiong, Wuping Sun, Lizu Xiao
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.14894

Inhibition of CDK8 mediator kinase suppresses estrogen dependent transcription and the growth of estrogen receptor positive breast cancer
Cited by: 91
Author(s): Martina S.J. McDermott, Alexander A. Chumanevich, Chang-Uk Lim, Jiaxin Liang, Mengqian Chen, Serena Altilia, David J. Oliver, James M. Rae, Michael Shtutman, Hippokratis Kiaris, Balázs Győrffy, Igor B. Roninson, Eugenia V. Broude
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-015-2151-7

Comprehensive characterization of a time-course transcriptional response induced by autotoxins in Panax ginseng using RNA-Seq
Cited by: 23
Author(s): Bin Wu, Qiliang Long, Yuan Gao, Zi Wang, Tianwei Shao, Yanan Liu, Yong Li, Wanlong Ding
Software Mentions: 1
Published: almost 11 years ago

10.3389/fnins.2018.00220

Transcriptional Profiling of Ligand Expression in Cell Specific Populations of the Adult Mouse Forebrain That Regulates Neurogenesis
Cited by: 11
Author(s): Kasum Azim, Rainer Akkermann, Martina Cantone, Julio Vera, Janusz Jadasz, Patrick Küry
Software Mentions: 1
Published: over 8 years ago

10.3389/fnins.2019.01365

Tryptophan Metabolism by Gut Microbiome and Gut-Brain-Axis: An in silico Analysis
Cited by: 164
Author(s): Harrisham Kaur, Chandrani Bose, Sharmila S. Mande
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.5874

Dynamic proteomic changes in soft wheat seeds during accelerated ageing
Cited by: 8
Author(s): Yangyong Lv, Pingping Tian, Shuai-Bing Zhang, Jinshui Wang, Yuansen Hu
Software Mentions: 1
Published: almost 8 years ago

10.3390/medicina57030218

Transcriptomics of Long-Term Meditation Practice: Evidence for Prevention or Reversal of Stress Effects Harmful to Health
Cited by: 7
Author(s): Supaya Wenuganen, Kenneth G. Walton, Shilpa Katta, Clifton L. Dalgard, Gauthaman Sukumar, Joshua Starr, Frederick Travis, Robert K. Wallace, Paul Morehead, Nancy K Lonsdorf, Meera Srivastava, John B. Fagan
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.00551

Diel Variation in Gene Expression of the CO2-Concentrating Mechanism during a Harmful Cyanobacterial Bloom
Cited by: 26
Author(s): Giovanni Sandrini, Robert P. Tann, J. Merijn Schuurmans, S.A.M. van Beusekom, H.C.P. Matthijs, Jef Huisman
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1008068

The H3K27me3 demethylase REF6 promotes leaf senescence through directly activating major senescence regulatory and functional genes in Arabidopsis
Cited by: 43
Author(s): Xiaolei Wang, Jiong Gao, Shan Gao, Yi Song, Zhen Yang, Kálmán Benke
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2019.01054

Identification of Candidate Biomarkers and Analysis of Prognostic Values in Oral Squamous Cell Carcinoma
Cited by: 48
Author(s): Guangzhao Huang, Qimeng Wu, Zenan Zheng, Ting-ru Shao, Xiaoyang Lv
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms22031227

iPSC-Derived Hereditary Breast Cancer Model Reveals the BRCA1-Deleted Tumor Niche as a New Culprit in Disease Progression
Cited by: 13
Author(s): Lucie Portier, Christophe Desterke, Diana Chaker, Noufϊssa Oudrhiri, Afag Asgarova, Fatima Dkhissi, Ali G. Turhan, Annelise Bennaceur-Griscelli, Frank Griscelli
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01458

The Microbiome of Posidonia oceanica Seagrass Leaves Can Be Dominated by Planctomycetes
Cited by: 37
Author(s): Timo Kohn, Patrick Rast, Nicolai Kallscheuer, Sandra Wiegand, Christian Boedeker, Mike S. M. Jetten, Olga Jeske, John Vollmers, Anne‐Kristin Kaster, Manfred Rohde, Mareike Jogler, Christian Jogler
Software Mentions: 1
Published: about 6 years ago

10.1186/s13567-021-00898-x

Klebsiella pneumoniae infection causes mitochondrial damage and dysfunction in bovine mammary epithelial cells
Cited by: 11
Author(s): Jia Cheng, Jv Zhang, Jingyue Yang, Bing Yi, Gang Liu, Man Zhou, John P. Kastelic, Bo Han, Jian Gao
Software Mentions: 1
Published: over 5 years ago

10.1186/s13567-016-0392-3

Distinct functional enrichment of transcriptional signatures in pigs with high and low IFN-gamma responses after vaccination with a porcine reproductive and respiratory syndrome virus (PRRSV)
Cited by: 6
Author(s): Tahar Aït-Ali, Iván Díaz, Ferran Soldevila, Esmeralda Cano, Yanli Li, Alastair Wilson, Bruno Giotti, Alan Archibald, Enric Mateu, Laila Darwich
Software Mentions: 1
Published: almost 10 years ago

10.1097/MD.0000000000011887

Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer
Cited by: 36
Author(s): Naiqiang Zhu, Jingyi Hou, Yuanhao Wu, Jinxin Liu, Geng Li, Wenjia Zhao, Guiyun Ma, Bin Chen, Youxin Song
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.12909

Hedgehog pathway dysregulation contributes to the pathogenesis of human gastrointestinal stromal tumors <i>via</i> GLI-mediated activation of <i>KIT</i> expression
Cited by: 26
Author(s): Chih Min Tang, Tracy E. Lee, Sabriya A. Syed, Adam M. Burgoyne, Samantha Leonard, Fei Gao, Jonathan C.H. Chan, Eileen Shi, Juliann Chmielecki, Deborah Morosini, Kai Wang, Jeffrey S. Ross, Michael L. Kendrick, Michael R. Bardsley, Martina De Siena, Junhao Mao, Olivier Harismendy, Tamás Ördög, Jason K. Sicklick
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12866-017-1047-x

Insights into the Geobacillus stearothermophilus species based on phylogenomic principles
Cited by: 39
Author(s): Sara Burgess, Steve Flint, D. Lindsay, Murray P. Cox, Patrick J. Biggs
Software Mentions: 1
Published: about 9 years ago

10.1186/s12870-017-1183-3

Transcriptomic analysis of wound xylem formation in Pinus canariensis
Cited by: 17
Author(s): Víctor Chano, Carmen Collada, Álvaro Soto
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0182868

Contaminants of emerging concern in tributaries to the Laurentian Great Lakes: I. Patterns of occurrence
Cited by: 79
Author(s): Sarah Elliott, Mark E. Brigham, Kathy E. Lee, Jo A. Banda, Steven J. Choy, Daniel J. Gefell, Thomas Minarik, Joseph Moore, Zachary G. Jorgenson
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.9076

Abundant PD-L1 expression in Epstein-Barr Virus-infected gastric cancers
Cited by: 228
Author(s): Sarah Derks, Xiaoyun Liao, Anna Maria Chiaravalli, Xiayu Xu, M. Constanza Camargo, Enrico Solcia, Fausto Sessa, Tania Fleitas, Gordon J. Freeman, Scott J. Rodig, Charles S. Rabkin, Adam J. Bass
Software Mentions: 1
Published: over 10 years ago

10.3389/fonc.2021.691500

A Newly Identified lncBCAS1-4_1 Associated With Vitamin D Signaling and EMT in Ovarian Cancer Cells
Cited by: 3
Author(s): Yi Xue, Ping Wang, Fei Jiang, Jie Yu, Hongmei Ding, Zengli Zhang, Hailong Pei, Bingyan Li
Software Mentions: 1
Published: about 5 years ago

10.1186/s12870-018-1569-x

Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)
Cited by: 34
Author(s): Arun Kumaran Anguraj Vadivel, Kevin Krysiak, Gang Tian, Sangeeta Dhaubhadel
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2020.562253

Long Noncoding RNA LOC400043 (LINC02381) Inhibits Gastric Cancer Progression Through Regulating Wnt Signaling Pathway
Cited by: 28
Author(s): Meisam Jafarzadeh, Bahram Mohammad Soltani
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2019.00930

Phospho-Protein Arrays as Effective Tools for Screening Possible Targets for Kinase Inhibitors and Their Use in Precision Pediatric Oncology
Cited by: 7
Author(s): Jakub Neradil, Michal Kýr, Kristýna Polášková, Leoš Křen, Petra Macigova, J. Škoda, Jaroslav Štěrba, Renata Veselská
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.00369

Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress
Cited by: 108
Author(s): Patricia Hingston, Jessica Chen, Bhavjinder K. Dhillon, Chad R. Laing, Claire Bertelli, Victor P. J. Gannon, Taurai Tasara, Kevin Allen, Fiona S. L. Brinkman, Lisbeth Truelstrup Hansen, Siyun Wang
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-10-200

Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation
Cited by: 98
Author(s): Hemant R. Kushwaha, Anil Kumar Singh, Sudhir K. Sopory, Sneh L. Singla‐Pareek, Ashwani Pareek
Software Mentions: 1
Published: over 17 years ago

10.3390/metabo9060105

Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains
Cited by: 8
Author(s): Diana Montes-Grajales, Nuria Esturau‐Escofet, Baldomero Esquivel, Esperanza Martínez‐Romero
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-66860-7

Genome-wide characterization and expression analyses of the auxin/indole-3-acetic acid (Aux/IAA) gene family in barley (Hordeum vulgare L.)
Cited by: 13
Author(s): Qi Shi, Yueya Zhang, Vinh-Trieu To, Shi Jin, Dabing Zhang, Wenguo Cai
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.03138

Dynamics of Gut Microbiome in Giant Panda Cubs Reveal Transitional Microbes and Pathways in Early Life
Cited by: 25
Author(s): Min Guo, Jianwei Chen, Qiongfang Li, Ying Fu, Guangyi Fan, Jinmin Ma, Ling Peng, Liyun Zeng, Jing Chen, Yayu Wang, Simon Ming‐Yuen Lee
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-13-359

The ribonuclease Dis3 is an essential regulator of the developmental transcriptome
Cited by: 32
Author(s): Dong Hou, Miriam Osés Ruiz, Erik D. Andrulis
Software Mentions: 1
Published: about 14 years ago

10.1186/s12870-015-0414-8

Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation
Cited by: 41
Author(s): Amit Kumar Tripathi, Kundan Singh, Ashwani Pareek, Sneh L. Singla‐Pareek
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2018.00568

Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region
Cited by: 93
Author(s): Katarzyna Siegel-Hertz, Véronique Edel-Hermann, Emilie Chapelle, Sébastien Terrat, Jos M. Raaijmakers, Christian Steinberg
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0098420

Deep 16S rRNA Pyrosequencing Reveals a Bacterial Community Associated with Banana Fusarium Wilt Disease Suppression Induced by Bio-Organic Fertilizer Application
Cited by: 79
Author(s): Zongzhuan Shen, Dongsheng Wang, Yunze Ruan, Cong Xue, Jian Zhang
Software Mentions: 1
Published: over 12 years ago

10.3389/fphys.2018.01399

Proteomic Responses Under Cold Stress Reveal Unique Cold Tolerance Mechanisms in the Pacific White Shrimp (Litopenaeus vannamei)
Cited by: 15
Author(s): J. Peng, Pingping He, Pinyuan Wei, Bin Zhang, Yang Zhao, Qiangyong Li, Xiuli Chen, Min Peng, Dingyuan Zeng, Chunling Yang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fphys.2021.690185

Comparative Genomics Provide Insights Into Function and Evolution of Odorant Binding Proteins in Cydia pomonella
Cited by: 3
Author(s): Cong Huang, Xue Zhang, Dalin He, Qiang Wu, Rui Tang, Longsheng Xing, Wan‐Xue Liu, Wenkai Wang, Bo Liu, Yu X, Yang Ni, Fanghao Wan, Wanqiang Qian
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2021.683651

ETS1, ELK1, and ETV4 Transcription Factors Regulate Angiopoietin-1 Signaling and the Angiogenic Response in Endothelial Cells
Cited by: 5
Author(s): Sharon Harel, Verónica Sánchez, Alaa Moamer, Javier E. Sanchez-Galán, Mohammad N Abid Hussein, Dominique Mayaki, Mathieu Blanchette, Sabah N. A. Hussain
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2015.00253

Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?
Cited by: 99
Author(s): Tiffanie M. Nelson, Joanna-Lynn C. Borgogna, Rebecca M. Brotman, Jacques Ravel, Seth T. Walk, Carl J. Yeoman
Software Mentions: 1
Published: almost 11 years ago

10.18632/oncotarget.17564

Overexpression of a novel candidate oncogene KIF14 correlates with tumor progression and poor prognosis in prostate cancer
Cited by: 38
Author(s): Yixiang Zhang, Yeqing Yuan, Peidong Liang, Zhaoxia Zhang, Xiaojing Guo, Ligang Xia, Yingying Zhao, Xing-sheng Shu, Song Sun, Ying Ying, Yingduan Cheng
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18664

miR-331-3p and Aurora Kinase inhibitor II co-treatment suppresses prostate cancer tumorigenesis and progression
Cited by: 19
Author(s): Michael R. Epis, Keith M. Giles, Dianne J. Beveridge, Kirsty Richardson, Patrick A. Candy, Lisa M. Stuart, Jacqueline M. Bentel, Ronald J. Cohen, Peter J. Leedman
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0148815

The Impact of Ischemia/Reperfusion Injury on Liver Allografts from Deceased after Cardiac Death versus Deceased after Brain Death Donors
Cited by: 28
Author(s): Jin Xu, Blayne A. Sayed, Ana María Casas-Ferreira, Parthi Srinivasan, Nigel Heaton, Mohammed Rela, Yun Ma, Susan V. Fuggle, Cristina Legido‐Quigley, Wayel Jassem
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pbio.3001292

N6-methyladenosine promotes induction of ADAR1-mediated A-to-I RNA editing to suppress aberrant antiviral innate immune responses
Cited by: 19
Author(s): Hideki Terajima, Mijia Lu, Linda Zhang, Qi Cui, Yanhong Shi, Jiànróng Lǐ, Chuan He
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2229-11-10

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonicarice
Cited by: 108
Author(s): Yutaka Satō, Baltazar A. Antonio, Nobukazu Namiki, Ritsuko Motoyama, Kazuhiko Sugimoto, Hinako Takehisa, Hiroshi Minami, Kaori Kamatsuki, Makoto Kusaba, Hirohiko Hirochika, Yoshiaki Nagamura
Software Mentions: 1
Published: over 15 years ago

10.3389/fpls.2021.641678

Specificity and Plasticity of the Functional Ionome of Brassica napus and Triticum aestivum Exposed to Micronutrient or Beneficial Nutrient Deprivation and Predictive Sensitivity of the Ionomic Signatures
Cited by: 9
Author(s): Aurélien D’Oria, Galatéa Courbet, Aurélia Lornac, Sylvain Pluchon, Mustapha Arkoun, Anne Maillard, Philippe Étienne, Sylvain Diquélou, Alain Ourry
Software Mentions: 1
Published: over 5 years ago

10.1186/s13567-015-0224-x

phoP, SPI1, SPI2 and aroA mutants of Salmonella Enteritidis induce a different immune response in chickens
Cited by: 7
Author(s): Marta Elsheimer-Matulova, Karolína Varmužová, Kamila Kýrová, Hana Havlíčková, František Šišák, Masudur Rahman, Ivan Rychlı́k
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.vaccine.2018.09.056

Antigenic and sequence variability of the human respiratory syncytial virus F glycoprotein compared to related viruses in a comprehensive dataset
Cited by: 30
Author(s): Vicente Más, Harish Nair, Harry Campbell, José A. Melero, Thomas C Williams
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2016.01892

Waste Conversion into n-Caprylate and n-Caproate: Resource Recovery from Wine Lees Using Anaerobic Reactor Microbiomes and In-line Extraction
Cited by: 96
Author(s): Leo A. Kucek, Jiajie Xu, Mytien Nguyen, Largus T. Angenent
Software Mentions: 1
Published: almost 10 years ago

10.3389/fimmu.2020.01474

Nicotine Changes the microRNA Profile to Regulate the FOXO Memory Program of CD8+ T Cells in Rheumatoid Arthritis
Cited by: 9
Author(s): Caroline Wasén, Caroline Ospelt, Alessandro Camponeschi, Malin C. Erlandsson, Karin Andersson, Sofia Töyrä Silfverswärd, Maria Bokarewa
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0007758

Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding
Cited by: 35
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 6 years ago

10.1186/ar3457

The gene expression profile of preclinical autoimmune arthritis and its modulation by a tolerogenic disease-protective antigenic challenge
Cited by: 8
Author(s): Hua Yu, Chi-Wei Lu, Ming Tan, Kamal D. Moudgil
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0105323

In Vitro and In Vivo Studies for Assessing the Immune Response and Protection-Inducing Ability Conferred by Fasciola hepatica-Derived Synthetic Peptides Containing B- and T-Cell Epitopes
Cited by: 29
Author(s): José Rojas-Caraballo, Julio López‐Abán, Luis Villar, Carolina Vizcaíno, Belén Vicente, Pedro Fernández‐Soto, Esther del Olmo, Manuel A. Patarroyo, Antonio Muro
Software Mentions: 1
Published: about 12 years ago

10.3389/fpls.2020.563240

Different Age-Induced Changes in Rhizosphere Microbial Composition and Function of Panax ginseng in Transplantation Mode
Cited by: 14
Author(s): Qiuxia Wang, Huifeng Sun, Meijia Li, Chenglu Xu, Yayu Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-015-2258-x

Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes
Cited by: 69
Author(s): Zhihui Wang, Ke Cheng, Ling‐Shu Wan, Liying Yan, Huifang Jiang, Liu S, Yong Lei, Boshou Liao
Software Mentions: 1
Published: over 10 years ago

10.3389/fimmu.2019.01229

Differential Proinflammatory Signature in Vestibular Migraine and Meniere Disease
Cited by: 50
Author(s): Marisa Flook, Lidia Frejo, Alvaro Gallego‐Martinez, Eduardo Martín-Sanz, Marcos Rossi-Izquierdo, Juan Carlos Amor-Dorado, Andrés Soto-Varela, Sofía Santos-Pérez, Ángel Batuecas‐Caletrío, Juan Manuel Espinosa-Sánchez, Patricia Pérez-Carpena, Marta Martínez-Martínez, Ismael Arán, José A. Lopez-Escamez
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2019.02866

Clostridioides difficile Colonization Is Differentially Associated With Gut Microbiome Profiles by Infant Feeding Modality at 3–4 Months of Age
Cited by: 20
Author(s): Kelsea M. Drall, Hein Min Tun, Nadia Morales-Lizcano, Theodore Konya, David S. Guttman, Catherine J. Field, Rupasri Mandal, David S. Wishart, Allan B. Becker, Meghan B. Azad, Diana L. Lefebvre, Piush J. Mandhane, Theo J. Moraes, Malcolm R. Sears, Stuart E. Turvey, Padmaja Subbarao, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.00946

Genome-Wide Identification of AP2/ERF Transcription Factors in Cauliflower and Expression Profiling of the ERF Family under Salt and Drought Stresses
Cited by: 57
Author(s): Hui Li, Yu Wang, Mei Wu, Lihong Li, Cong Liu, Zhanpin Han, Jiye Yuan, Chengbin Chen, Wenqin Song, Chunguo Wang
Software Mentions: 1
Published: about 9 years ago

10.1002/advs.201900809

Biologically Targeted Photo‐Crosslinkable Nanopatch to Prevent Postsurgical Peritoneal Adhesion
Cited by: 8
Author(s): Yu Mi, Feifei Yang, Cameron Bloomquist, Youli Xia, Bo Sun, Yanfei Qi, Kyle Wagner, Stephanie A. Montgomery, Tian Zhang, Andrew Z. Wang
Software Mentions: 1
Published: about 7 years ago

10.1186/s13075-019-2067-8

Unique primed status of microglia under the systemic autoimmune condition of lupus-prone mice
Cited by: 15
Author(s): Akihiro Nomura, Daisuke Noto, Goh Murayama, Asako Chiba, Sachiko Miyake
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.559925

Immunological Hallmarks of Inflammatory Status in Vaso-Occlusive Crisis of Sickle Cell Anemia Patients
Cited by: 10
Author(s): Alexander Leonardo Silva-Junior, Nadja Pinto Garcia, Evilázio Cunha Cardoso, S Dias, Andréa Monteiro Tarragô, Nelson Abrahim Fraiji, Marcos Antônio Silvestre Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Erich Vinícius De Paula, Allyson Guimarães Costa, Adriana Malheiro
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-63470-1

SWATH-MS-based quantitative proteomics reveals a uniquely intricate defense response in Cnaphalocrocis medinalis-resistant rice
Cited by: 8
Author(s): Boon Huat Cheah, Hsiao‐Han Lin, Han‐Ju Chien, Chung-Ta Liao, Liyu Liu, Chien‐Chen Lai, Ya-Fen Lin, Wen-Po Chuang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-021-03019-0

Comparative transcriptome analysis reveals distinct gene expression profiles in Brachypodium distachyon infected by two fungal pathogens
Cited by: 4
Author(s): Guijie Zhu, Chengyu Gao, Chenyu Wu, Mu Li, Jin‐Rong Xu, Huiquan Liu, Qinhu Wang
Software Mentions: 1
Published: about 5 years ago

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