Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: gplots

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gplots

Various R Programming Tools for Plotting Data
35 versions
Latest release: over 2 years ago
156 dependent packages
97,747 downloads last month

Papers Mentioning gplots 2,122

10.1186/1471-2164-11-369
Comparative genomics of the family Vibrionaceae reveals the wide distribution of genes encoding virulence-associated proteins
Cited by: 14
Author(s): Timothy Lilburn, Jianying Gu, Hong-Hong Cai, Yufeng Wang
Software Mentions: 2
Published: almost 15 years ago
10.3389/fpls.2021.716955
The Haplotype-Based Analysis of Aegilops tauschii Introgression Into Hard Red Winter Wheat and Its Impact on Productivity Traits
Cited by: 6
Author(s): Moses Nyine, Elina Adhikari, Marshall Clinesmith, Robert M. Aiken, Bliss Betzen, Wei Wang, Dwight Davidson, Zitong Yu, Yuanwen Guo, Fei He, Alina Akhunova, Katherine Jordan, Allan K. Fritz, Eduard Akhunov
Software Mentions: 2
Published: over 3 years ago
10.1186/s12864-016-2557-x
Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells
Cited by: 46
Author(s): Cyril Guilhen, Nicolas Charbonnel, Nicolas Parisot, Nathalie Gueguen, Agnès Iltis, Christiane Forestier, Damien Balestrino
Software Mentions: 2
Published: over 8 years ago
10.3389/fpls.2019.01323
Transcriptome Analysis of the Hierarchical Response of Histone Deacetylase Proteins That Respond in an Antagonistic Manner to Salinity Stress
Cited by: 13
Author(s): Minoru Ueda, Atsushi Matsui, S. Watanabe, Makoto Kobayashi, Kazuki Saito, Maho Tanaka, Junko Ishida, Miyako Kusano, Mitsunori Seo, Motoaki Seki
Software Mentions: 2
Published: about 5 years ago
10.1186/1471-2164-15-488
Genome-wide mapping of miRNAs expressed in embryonic stem cells and pluripotent stem cells generated by different reprogramming strategies
Cited by: 21
Author(s): Bingjie Zhao, Dehua Yang, Jing Jiang, Jinsong Li, Chunsun Fan, Menggui Huang, Yi Fan, Yan Jin, Youxin Jin
Software Mentions: 2
Published: over 10 years ago
10.1186/s12864-016-3233-x
A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures
Cited by: 2
Author(s): Bliss Lambert, Maheshi Dassanayake, Dong Ha Oh, Shana B. Garrett, Sang Yeol Lee, Gregg S. Pettis
Software Mentions: 2
Published: about 8 years ago
10.3389/fpls.2015.01260
Microarray Meta-Analysis Focused on the Response of Genes Involved in Redox Homeostasis to Diverse Abiotic Stresses in Rice
Cited by: 20
Author(s): Joao Braga de Abreu Neto, Michael Frei
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12864-019-6334-5
Seed interior microbiome of rice genotypes indigenous to three agroecosystems of Indo-Burma biodiversity hotspot
Cited by: 30
Author(s): Garima Raj, Mohammad Umar. Shadab, Sujata Deka, Manashi Das, Jilmil Baruah, Rupjyoti Bharali, Narayan Chandra Talukdar
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12864-017-3698-2
Global analysis of protein lysine succinylation profiles in common wheat
Cited by: 44
Author(s): Yumei Zhang, Guangyuan Wang, Limin Song, Mu Peng, Wang Shu, Wenxing Liang, Qingsong Lin
Software Mentions: 2
Published: over 7 years ago
10.1186/s12864-017-3813-4
Uncovering the transcriptomic and epigenomic landscape of nicotinic receptor genes in non-neuronal tissues
Cited by: 12
Author(s): Bo Zhang, Pamela A. F. Madden, Junchen Gu, Xiaoyun Xing, Savita Sankar, Jennifer A. Karlow, Kristen L. Kroll, Ting Wang
Software Mentions: 2
Published: over 7 years ago
10.3389/fvets.2021.692646
Prevalence and Risk Factors Associated With Antimicrobial Resistance in Bacteria Related to Bovine Respiratory Disease—A Broad Cross-Sectional Study of Beef Cattle at Entry Into Canadian Feedlots
Cited by: 10
Author(s): Sara Andrés-Lasheras, Reuben Ha, Rahat Zaheer, Catrione Lee, Calvin W. Booker, Craig Dorin, Joyce Van Donkersgoed, Rob Deardon, Sheryl Gow, Sherry J. Hannon, S. Hendrick, Michele Anholt, Tim A. McAllister
Software Mentions: 2
Published: over 3 years ago
10.3389/fvets.2014.00019
Characterization of the Vaginal Microbiota of Ewes and Cows Reveals a Unique Microbiota with Low Levels of Lactobacilli and Near-Neutral pH
Cited by: 103
Author(s): Jeffrey Swartz, Medora Lachman, Kelsey Westveer, Thomas OʼNeill, T. W. Geary, R. W. Kott, J. G. Berardinelli, P. G. Hatfield, Jennifer M. Thomson, A. J. Roberts, Carl J. Yeoman
Software Mentions: 2
Published: about 10 years ago
10.1186/s12864-016-3413-8
Cecal MicroRNAome response to Salmonella enterica serovar Enteritidis infection in White Leghorn Layer
Cited by: 25
Author(s): Guixian Wu, Yukai Qi, Xiaoyi Liu, Ning Yang, Guiyun Xu, Liying Liu, Xianyao Li
Software Mentions: 2
Published: almost 8 years ago
10.4155/fsoa-2018-0046
Profiling and bioinformatics analyses of differential circular RNA expression in prostate cancer cells
Cited by: 21
Author(s): Chunlei Zhang, Jun Xiong, Qi Yang, Ye Wang, Haoqing Shi, Quan Tian, Hai Huang, De-Pei Kong, Jian-Min Lv, Dan Liŭ, Xu Gao, Xiaoyuan Zi, Yinghao Sun
Software Mentions: 2
Published: about 6 years ago
10.1534/g3.116.032490
Identification of Genes in<i>Candida glabrata</i>Conferring Altered Responses to Caspofungin, a Cell Wall Synthesis Inhibitor
Cited by: 18
Author(s): Anne G. Rosenwald, Gaurav Arora, Rocco Ferrandino, Erica L. Gerace, Maedeh Mohammednetej, Waseem Nosair, Shemona Rattila, Amanda Zirzow Subic, Ronda J. Rolfes
Software Mentions: 2
Published: about 8 years ago
10.1186/s12864-016-3308-8
A transcriptome-based model of central memory CD4 T cell death in HIV infection
Cited by: 11
Author(s): Gustavo Olvera-García, Tania Aguilar-García, Fany Gutiérrez-Jasso, Iván Imaz-Rosshandler, Claudia Rangel‐Escareño, Lorena Orozco, Irma Aguilar-Delfín, Joel Armando Vázquez-Pérez, Joaquı́n Zúñiga, Santiago Pérez-Patrigeón, Enrique Espinosa
Software Mentions: 2
Published: about 8 years ago
10.3390/genes10080612
Identification of Key Genes and Pathways in Pancreatic Cancer Gene Expression Profile by Integrative Analysis
Cited by: 16
Author(s): Wei Lü, Ning Li, Fuyuan Liao
Software Mentions: 2
Published: over 5 years ago
10.1186/s12864-017-4366-2
Comparative transcriptome and proteome profiling of two Citrus sinensis cultivars during fruit development and ripening
Cited by: 38
Author(s): Jianhui Wang, Jianjun Li, Keling Chen, Hongwen Li, Jian He, Bin Guan, Li He
Software Mentions: 2
Published: almost 7 years ago
10.3390/genes12040602
Responses to Mineral Supplementation and Salmon Lice (Lepeophtheirus salmonis) Infestation in Skin Layers of Atlantic Salmon (Salmo salar L.)
Cited by: 4
Author(s): Lene Sveen, Aleksei Krasnov, Gerrit Timmerhaus, André Sture Bogevik
Software Mentions: 2
Published: over 3 years ago
10.1186/s12711-016-0200-6
Comparing the transcriptomes of embryos from domesticated and wild Atlantic salmon (Salmo salar L.) stocks and examining factors that influence heritability of gene expression
Cited by: 18
Author(s): Beatrix Bicskei, John B. Taggart, Kevin A. Glover, James E. Bron
Software Mentions: 2
Published: over 8 years ago
10.1186/gb-2010-11-3-r35
Conserved developmental transcriptomes in evolutionarily divergent species
Cited by: 162
Author(s): Anup Parikh, Edward Roshan Miranda, Mariko Katoh-Kurasawa, Danny Fuller, Gregor Rot, Lan Žagar, Tomaž Curk, Richard Sucgang, Rui Chen, Blaž Zupan, William F. Loomis, Adam Kuspa, Gad Shaulsky
Software Mentions: 2
Published: almost 15 years ago
10.1186/s12864-015-1897-2
cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers
Cited by: 13
Author(s): Jeffrey Ross, A. Kuzin, Theodore M. Brody, Ward F. Odenwald
Software Mentions: 2
Published: about 9 years ago
10.1084/jem.20180801
Ezh2 inhibition in Kras-driven lung cancer amplifies inflammation and associated vulnerabilities
Cited by: 27
Author(s): Michela Serresi, Bjørn Siteur, Danielle Hulsman, Matthias Jürgen Schmitt, Cor Lieftink, Ben Morris, Matteo Cesaroni, Natalie Proost, Roderick L. Beijersbergen, Maarten van Lohuizen, Gaetano Gargiulo
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12864-020-07025-8
Leishmania infection induces a limited differential gene expression in the sand fly midgut
Cited by: 11
Author(s): Iliano V. Coutinho-Abreu, Tiago D. Serafim, Claudio Meneses, Shaden Kamhawi, Fabiano Oliveira, Jesús G. Valenzuela
Software Mentions: 2
Published: about 4 years ago
10.3390/jof7010011
Botrytis cinerea Transcriptome during the Infection Process of the Bryophyte Physcomitrium patens and Angiosperms
Cited by: 11
Author(s): Guillermo Reboledo, Astrid Agorio, Lucía Vignale, Ramón Alberto Batista-García, Inés Ponce de León
Software Mentions: 2
Published: almost 4 years ago
10.3390/jof7030210
The Abundance and Diversity of Fungi in a Hypersaline Microbial Mat from Guerrero Negro, Baja California, México
Cited by: 9
Author(s): Paula Maza-Márquez, Michael D. Lee, Brad M. Bebout
Software Mentions: 2
Published: over 3 years ago
10.1186/s13059-016-1032-y
Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation
Cited by: 108
Author(s): Kaushik Panda, Lexiang Ji, Drexel A. Neumann, Josquin Daron, Robert J. Schmitz, R. Keith Slotkin
Software Mentions: 2
Published: over 8 years ago
10.3390/jof7090724
Molecular Insights into Defense Responses of Vietnamese Maize Varieties to Fusarium verticillioides Isolates
Cited by: 9
Author(s): Trang Minh Tran, Maarten Ameye, Sofie Landschoot, Frank Devlieghere, Sarah De Saeger, Mia Eeckhout, Kris Audenaert
Software Mentions: 2
Published: about 3 years ago
10.1186/s12864-020-6543-y
Transcriptional profiling and physiological roles of Aedes aegypti spermathecal-related genes
Cited by: 16
Author(s): Tales Vicari Pascini, Marcelo Ramalho-Ortigão, José M. C. Ribeiro, Marcelo Jacobs-­Lorena, Gustavo Ferreira Martins
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12864-015-1708-9
Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation
Cited by: 69
Author(s): John R. Tuttle, Gyoungju Nah, Mary V. Duke, Danny Alexander, Xueying Guan, Qingxin Song, Z. Jeffrey Chen, Brian E. Scheffler, Candace H. Haigler
Software Mentions: 2
Published: over 9 years ago
10.1111/acel.12472
Mitochondrial‐targeted catalase is good for the old mouse proteome, but not for the young: ‘reverse’ antagonistic pleiotropy?
Cited by: 31
Author(s): Nathan Basisty, Dao Fu Dai, Arni Gagnidze, Lemuel Gitari, Jeanne Fredrickson, Yvonne Maina, Richard P. Beyer, Mary J. Emond, Edward J. Hsieh, Michael J. MacCoss, George M. Martin, Peter S. Rabinovitch
Software Mentions: 2
Published: over 8 years ago
10.1155/2016/2895303
Differential Gene Expression during Larval Metamorphic Development in the Pearl Oyster,<i>Pinctada fucata</i>, Based on Transcriptome Analysis
Cited by: 8
Author(s): Haimei Li, Bo Zhang, Guiju Huang, Bao-Suo Liu, Sigang Fan, Dongling Zhang, Dahui Yu
Software Mentions: 2
Published: almost 9 years ago
10.1186/s13073-015-0169-8
A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status
Cited by: 146
Author(s): Victor Greiff, Pooja Bhat, Skylar C. Cook, Ulrike Menzel, Wenjing Kang, Sai T. Reddy
Software Mentions: 2
Published: over 9 years ago
10.1186/s13073-017-0418-0
Genetic pleiotropy between age-related macular degeneration and 16 complex diseases and traits
Cited by: 50
Author(s): Felix Graßmann, Christina Kiel, Martina E. Zimmermann, Florian Kronenberg, Veronika Grassmann, Klaus Stark, Iris M. Heid, Bernhard H. F. Weber
Software Mentions: 2
Published: over 7 years ago
10.1186/1471-2164-13-564
Divergence of the SigB regulon and pathogenesis of the Bacillus cereus sensu lato group
Cited by: 16
Author(s): Edgar J. Scott, David W. Dyer
Software Mentions: 2
Published: about 12 years ago
10.1155/2019/9520642
<i>DREB</i> Genes from Common Bean (<i>Phaseolus vulgaris</i> L.) Show Broad to Specific Abiotic Stress Responses and Distinct Levels of Nucleotide Diversity
Cited by: 16
Author(s): Enéas Ricardo Konzen, Gustavo Henrique Recchia, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Jorge C. Berny Mier y Teran, Paul Gepts, Siu Mui Tsai
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2164-12-130
In depth analysis of genes and pathways of the mammary gland involved in the pathogenesis of bovine Escherichia coli- mastitis
Cited by: 88
Author(s): Bart Buitenhuis, Christine M. Røntved, Stefan McKinnon Edwards, K.L. Ingvartsen, Peter Sørensen
Software Mentions: 2
Published: over 13 years ago
10.1186/s12864-015-1686-y
The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling
Cited by: 54
Author(s): Cecilia Lindskog, Jerker Linné, Linn Fagerberg, Björn M. Hallström, Carl Johan Sundberg, Maléne E. Lindholm, Mikael Huss, Caroline Kampf, Howard Choi, David A. Liem, Peipei Ping, Leif Väremo, Adil Mardinoğlu, Jens Nielsen, Erik Larsson, Fredrik Pontén, Mathias Uhlén
Software Mentions: 2
Published: over 9 years ago
10.1111/tan.14127
The <scp>HLA</scp> diversity of the Anthony Nolan register
Cited by: 10
Author(s): Gayle Leen, Jeremy E. Stein, James T. Robinson, H. Maldonado Torres, S. G. E. Marsh
Software Mentions: 2
Published: about 4 years ago
10.7150/ijms.35984
Protein chip and bioinformatic analyses of differentially expressed proteins involved in the effect of hydrogen-rich water on myocardial ischemia-reperfusion injury
Cited by: 6
Author(s): Liangtong Li, Tongtong Liu, Xiangzi Li, Xuanchen Liu, Li Liu, Shaochun Li, Zhilin Li, Yujuan Zhou, Fulin Liu
Software Mentions: 2
Published: almost 6 years ago
10.1002/hbm.24964
Impact of <i>b</i>‐value on estimates of apparent fibre density
Cited by: 58
Author(s): Sila Genc, Chantal M. W. Tax, Erika P. Raven, Maxime Chamberland, Greg D. Parker, Derek K. Jones
Software Mentions: 2
Published: over 4 years ago
10.1186/s12864-019-6274-0
Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage
Cited by: 10
Author(s): Matthew A. Nethery, Emily DeCrescenzo Henriksen, Katheryne V. Daughtry, Suzanne D. Johanningsmeier, Rodolphe Barrangou
Software Mentions: 2
Published: about 5 years ago
10.3390/insects11090593
Bacteria Belonging to Pseudomonas typographi sp. nov. from the Bark Beetle Ips typographus Have Genomic Potential to Aid in the Host Ecology
Cited by: 23
Author(s): Ezequiel Peral-Aranega, Zaki Saati‐Santamaría, Miroslav Kolařík, Raúl Rivas, Paula García‐Fraile
Software Mentions: 2
Published: about 4 years ago
10.1186/s12864-020-06999-9
Mining and evolution analysis of lateral organ boundaries domain (LBD) genes in Chinese white pear (Pyrus bretschneideri)
Cited by: 14
Author(s): Bobo Song, Zikai Tang, Xiaolong Li, Jiaming Li, Mingyue Zhang, Kunkun Zhao, Hainan Liu, Shaoling Zhang, Jun Wu
Software Mentions: 2
Published: about 4 years ago
10.1186/s40104-020-00511-9
Time-restricted feeding downregulates cholesterol biosynthesis program via RORγ-mediated chromatin modification in porcine liver organoids
Cited by: 10
Author(s): Kexin Zhang, Hao Li, Zimeng Xin, Yanwei Li, Xiaolong Wang, Yun Hu, Haoyu Liu, Demin Cai
Software Mentions: 2
Published: about 4 years ago
10.1186/1471-2164-15-311
Microbiota diversity and gene expression dynamics in human oral biofilms
Cited by: 132
Author(s): Alfonso Benı́tez-Páez, Pedro Belda-Ferre, Áurea Simón-Soro, Álex Mira
Software Mentions: 2
Published: almost 11 years ago
10.3390/jcdd8040045
Transcriptome Analysis Reveals Differential Gene Expression between the Closing Ductus Arteriosus and the Patent Ductus Arteriosus in Humans
Cited by: 5
Author(s): Junichi Saito, Tomoyuki Kojima, Shota Tanifuji, Yuko Kato, Shuntaro Oka, Yukio Ichikawa, Etsuko Miyagi, Tsuyoshi Tachibana, Toshihide Asou, Utako Yokoyama
Software Mentions: 2
Published: over 3 years ago
10.1242/jcs.245043
Automated 3D light-sheet screening with high spatiotemporal resolution reveals mitotic phenotypes
Cited by: 20
Author(s): Björn Eismann, Teresa G Krieger, Jürgen Beneke, Ruben Bulkescher, Lukas Adam, Holger Erfle, Carl Herrmann, Roland Eils, Christian Conrad
Software Mentions: 2
Published: almost 5 years ago
10.1186/1471-2164-12-526
Variation in chromosome copy number influences the virulence of Cryptococcus neoformans and occurs in isolates from AIDS patients
Cited by: 66
Author(s): Guanggan Hu, Joyce Wang, Jaehyuk Choi, Won Hee Jung, Iris Liu, Anastasia P. Litvintseva, Tihana Bicanic, Rajeev Aurora, Thomas G. Mitchell, John R. Perfect, James W. Kronstad
Software Mentions: 2
Published: about 13 years ago
10.3390/jcm8122029
A Novel Saliva-Based miRNA Signature for Colorectal Cancer Diagnosis
Cited by: 45
Author(s): Óscar Rapado‐González, Blanca Majem, Ana Álvarez-Castro, Roberto Díaz‐Peña, Alicia Abalo, Leticia Suárez‐Cabrera, Antonio Gil‐Moreno, Anna Santamaría, Rafael López‐López, Laura Muinelo‐Romay, María Mercedes Suárez‐Cunqueiro
Software Mentions: 2
Published: about 5 years ago
10.3390/jcm10050931
SARS-CoV-2 Is a Culprit for Some, but Not All Acute Ischemic Strokes: A Report from the Multinational COVID-19 Stroke Study Group
Cited by: 16
Author(s): Shima Shahjouei, Michelle Anyaehie, Eric Koza, Georgios Tsivgoulis, Soheil Naderi, Ashkan Mowla, Venkatesh Avula, Alireza Vafaei Sadr, Durgesh Chaudhary, Ghasem Farahmand, Christoph J. Griessenauer, Mahmoud Reza Azarpazhooh, Debdipto Misra, Li Jiang, Vida Abedi, Ramin Zand
Software Mentions: 2
Published: over 3 years ago
10.1093/jxb/erw179
Tissue-specific laser microdissection of the<i>Brassica napus</i>funiculus improves gene discovery and spatial identification of biological processes
Cited by: 19
Author(s): Ainsley Chan, Deirdre Khan, Ian J. Girard, Michael G. Becker, Jenna L. Millar, David Sytnik, Mark F. Belmonte
Software Mentions: 2
Published: over 8 years ago
10.1093/jxb/eraa021
Moderate water stress in rice induces rhizosheath formation associated with abscisic acid and auxin responses
Cited by: 30
Author(s): Yingjiao Zhang, Huan Du, Yao Gui, Feiyun Xu, Jianping Liu, Jianhua Zhang, Weifeng Xu
Software Mentions: 2
Published: almost 5 years ago
10.1093/jxb/eraa568
Protein phosphatase NtPP2C2b and MAP kinase NtMPK4 act in concert to modulate nicotine biosynthesis
Cited by: 10
Author(s): Xiaoyu Liu, Sanjay K. Singh, Barunava Patra, Yongliang Liu, Bing‐Wu Wang, Jinsheng Wang, Sitakanta Pattanaik, Ling Yuan
Software Mentions: 2
Published: almost 4 years ago
10.3390/ijerph16101805
The Effects of Pavement Types on Soil Bacterial Communities across Different Depths
Cited by: 8
Author(s): Weiwei Yu, Yinhong Hu, Bowen Cui, Yuanyuan Chen, Xiaoke Wang
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.ppat.1004079
Exposure-Dependent Control of Malaria-Induced Inflammation in Children
Cited by: 135
Author(s): Sílvia Portugal, Jacqueline Moebius, Jeff Skinner, Safiatou Doumbo, Didier Doumtabé, Younoussou Koné, Seydou Dia, Kishore Kanakabandi, Daniel E. Sturdevant, Kimmo Virtaneva, Stephen F. Porcella, Shanping Li, Ogobara K. Doumbo, Kassoum Kayentao, Aissata Ongoïba, Boubacar Traoré, Peter D. Crompton
Software Mentions: 2
Published: over 10 years ago
10.1186/s12864-015-1659-1
Six host-range restricted poxviruses from three genera induce distinct gene expression profiles in an in vivo mouse model
Cited by: 12
Author(s): Kristy Offerman, Armin Deffur, Olivia Carulei, Robert J. Wilkinson, Nicola Douglass, Anna‐Lise Williamson
Software Mentions: 2
Published: over 9 years ago
10.3390/nu11122839
Hormonal Therapy Resistance and Breast Cancer: Involvement of Adipocytes and Leptin
Cited by: 21
Author(s): Laëtitia Delort, Laurianne Bougaret, Juliette Cholet, Marion Vermerie, Hermine Billard, Caroline Decombat, Céline Bourgne, Marc Berger, Charles Dumontet, Florence Caldefie‐Chezet
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.ppat.1006576
Malaria-induced interferon-γ drives the expansion of Tbethi atypical memory B cells
Cited by: 122
Author(s): Nyamekye Obeng-Adjei, Sílvia Portugal, Prasida Holla, Shanping Li, Hyung Sun Sohn, Abhijit A. Ambegaonkar, Jeff Skinner, Georgina Bowyer, Ogobara K. Doumbo, Boubacar Traoré, Susan K. Pierce, Peter D. Crompton
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.ppat.1007420
Differential induction of interferon stimulated genes between type I and type III interferons is independent of interferon receptor abundance
Cited by: 89
Author(s): Kalliopi Pervolaraki, Soheil Rastgou Talemi, Dorothee Albrecht, Felix Bormann, Connor Bamford, Juan L. Mendoza, K. Christopher García, John McLauchlan, Thomas Höfer, Megan L. Stanifer, Steeve Boulant
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.ppat.1007990
Caspase-11-dependent IL-1α release boosts Th17 immunity against Paracoccidioides brasiliensis
Cited by: 18
Author(s): Natália Ketelut-Carneiro, Camila Oliveira Silva Souza, Luciana Benevides, Luiz Gustavo Gardinassi, Maria Cláudia Silva, Lucas Tavares, Dario S. Zamboni, João Silva
Software Mentions: 2
Published: over 5 years ago
10.3390/ijerph17197137
Markers Specific to Bacteroides fragilis Group Bacteria as Indicators of Anthropogenic Pollution of Surface Waters
Cited by: 6
Author(s): Sebastian Niestępski, Monika Harnisz, Ewa Korzeniewska, Adriana Osińska
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.ppat.1009149
Predicting the animal hosts of coronaviruses from compositional biases of spike protein and whole genome sequences through machine learning
Cited by: 14
Author(s): Liam Brierley, Anna Fowler
Software Mentions: 2
Published: over 3 years ago
10.1098/rspb.2018.2929
Genomic signatures of G-protein-coupled receptor expansions reveal functional transitions in the evolution of cephalopod signal transduction
Cited by: 9
Author(s): Elena A. Ritschard, Robert R. Fitak, Oleg Simakov, Sönke Johnsen
Software Mentions: 2
Published: almost 6 years ago
10.3390/ijerph17197081
Assessing the Beneficial Effects of the Immunomodulatory Glycan LNFPIII on Gut Microbiota and Health in a Mouse Model of Gulf War Illness
Cited by: 11
Author(s): Ryan S. Mote, Jessica M. Carpenter, Rachel L. Dockman, Andrew J. Steinberger, Garret Suen, Thomas Norberg, Donald A. Harn, John J. Wagner, Nikolay M. Filipov
Software Mentions: 2
Published: about 4 years ago
10.1007/s13238-018-0572-1
Dgcr8 deletion in the primitive heart uncovered novel microRNA regulating the balance of cardiac-vascular gene program
Cited by: 10
Author(s): Xi Chen, Lin Wang, Rujin Huang, Hui Qiu, Peizhe Wang, Da‐Ren Wu, Yonglin Zhu, Ming Jia, Yangming Wang, Jianbin Wang, Jie Na
Software Mentions: 2
Published: over 6 years ago
10.3390/proteomes4030021
Understanding the Remodelling of Cell Walls during Brachypodium distachyon Grain Development through a Sub-Cellular Quantitative Proteomic Approach
Cited by: 15
Author(s): Mathilde Francin-Allami, Virginie Lollier, Marija Pavlović, Hélène San Clemente, Hélène Rogniaux, Élisabeth Jamet, Fabienne Guillon, Colette Larré
Software Mentions: 2
Published: over 8 years ago
10.3390/ijerph18020563
The Prevalence of Virulent and Multidrug-Resistant Enterococci in River Water and in Treated and Untreated Municipal and Hospital Wastewater
Cited by: 17
Author(s): Anna Gotkowska-Płachta
Software Mentions: 2
Published: almost 4 years ago
10.1089/rej.2018.2077
The Plasma NAD<sup>+</sup>Metabolome Is Dysregulated in “Normal” Aging
Cited by: 114
Author(s): James P. Clement, Matthew Wai Kin Wong, Anne Poljak, Perminder S. Sachdev, Nady Braidy
Software Mentions: 2
Published: over 5 years ago
10.1155/2020/4832189
Linking Complement C3 and B Cells in Nasal Polyposis
Cited by: 3
Author(s): Ulrike Werner, Axel Künstner, Maren Drenckhan, Ralph Pries, Karl‐Ludwig Bruchhage, Hauke Busch, Claus Bachert, Barbara Wollenberg
Software Mentions: 2
Published: over 4 years ago
10.1186/s12931-018-0861-5
Transforming growth factor beta1 targets estrogen receptor signaling in bronchial epithelial cells
Cited by: 29
Author(s): L. Cody Smith, Santiago Moreno, Lauren Robertson, Sarah Robinson, Kristal Gant, Andrew J. Bryant, Tara Sabo‐Attwood
Software Mentions: 2
Published: about 6 years ago
10.1186/1471-2164-13-441
Transcriptomic and metabolomic profiling of chicken adipose tissue in response to insulin neutralization and fasting
Cited by: 87
Author(s): Bo Ji, Ben Ernest, Jessica Gooding, Suchita Das, Arnold M. Saxton, Jean Simon, Joëlle Dupont, Sonia Métayer-Coustard, Shawn R. Campagna, Brynn H. Voy
Software Mentions: 2
Published: about 12 years ago
10.1038/s41598-018-30569-5
Klebsiella oxytoca expands in cancer cachexia and acts as a gut pathobiont contributing to intestinal dysfunction
Cited by: 66
Author(s): Sarah A. Pötgens, Hélène Brossel, Martina Sboarina, Émilie Catry, Patrice D. Cani, Audrey M. Neyrinck, Laure B. Bindels
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-31428-z
Schlafen2 mutation in mice causes an osteopetrotic phenotype due to a decrease in the number of osteoclast progenitors
Cited by: 9
Author(s): Ibrahim Che Omar, Gali Guterman-Ram, Dolev Rahat, Yuval Tabach, Michael Berger, Noam Levaot
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-018-31706-w
Bacterial communities and potential waterborne pathogens within the typical urban surface waters
Cited by: 47
Author(s): Decai Jin, Xiao Kong, Bingjian Cui, Shulan Jin, Yonghong Xie, Xingrun Wang, Ye Deng
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-018-32019-8
Gene expression analysis of Atlantic salmon gills reveals mucin 5 and interleukin 4/13 as key molecules during amoebic gill disease
Cited by: 36
Author(s): Mar Marcos-López, Josep Àlvar Calduch-Giner, Luca Mirimin, Eugene MacCarthy, H. D. Rodger, Ian O’Connor, Ariadna Sitjà‐Bobadilla, Jaume Pérez‐Sánchez, M. Carla Piazzon
Software Mentions: 2
Published: about 6 years ago
10.1038/onc.2016.164
MicroRNA-101 regulated transcriptional modulator SUB1 plays a role in prostate cancer
Cited by: 56
Author(s): Balabhadrapatruni V. S. K. Chakravarthi, Moloy T. Goswami, Satya S. Pathi, Alyncia D. Robinson, Marcin Cieślik, Darshan S. Chandrashekar, Sumit Agarwal, Javed Siddiqui, Stephanie Daignault, Shannon Carskadon, Xiaojun Jing, Arul M. Chinnaiyan, Lakshmi P. Kunju, Nallasivam Palanisamy, Sooryanarayana Varambally
Software Mentions: 2
Published: over 8 years ago
10.1186/1471-230X-13-131
Association of gut microbiota with post-operative clinical course in Crohn’s disease
Cited by: 88
Author(s): Neelendu Dey, David Soergel, Susanna Repo, Steven E. Brenner
Software Mentions: 2
Published: over 11 years ago
10.1186/1471-230X-14-55
DNA methylation subgroups and the CpG island methylator phenotype in gastric cancer: a comprehensive profiling approach
Cited by: 34
Author(s): Marie Loh, Natalia Liem, Aparna Vaithilingam, Pei Li Lim, Nur Sabrina Sapari, Eiram Elahi, Zuan Yu Mok, Chee Leong Cheng, Benedict Yan, Brendan Pang, Manuel Salto-Tellez, Wei Peng Yong, Barry Iacopetta, Richie Soong
Software Mentions: 2
Published: over 10 years ago
10.1038/s41598-019-42341-4
Biological ingredient complement chemical ingredient in the assessment of the quality of TCM preparations
Cited by: 12
Author(s): Hong Bai, Xianhong Li, Hongjun Li, Jialiang Yang, Kang Ning
Software Mentions: 2
Published: over 5 years ago
10.1038/s41388-021-01732-6
Proteasome 26S subunit, non-ATPases 1 (PSMD1) and 3 (PSMD3), play an oncogenic role in chronic myeloid leukemia by stabilizing nuclear factor-kappa B
Cited by: 20
Author(s): Alfonso E. Bencomo‐Alvarez, Andres J. Rubio, Idaly M. Olivas, Mayra A. Gonzalez, Rebecca Ellwood, Carme Ripoll Fiol, Christopher A. Eide, Joshua J. Lara, Christian Barreto‐Vargas, Luis F Jave-Suárez, Georgios Nteliopoulos, Alistair Reid, Dragana Milojković, Brian J. Druker, Jane F. Apperley, Jamshid S. Khorashad, Anna M. Eiring
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-019-47297-z
Clonal Evolution and Changes in Two AML Patients Detected with A Novel Single-Cell DNA Sequencing Platform
Cited by: 24
Author(s): Liwen Xu, Robert Durruthy-Durruthy, Dennis J. Eastburn, Maurizio Pellegrino, Omid Shah, Everett Meyer, James L. Zehnder
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-49648-2
Cigarette smoke alters the transcriptome of non-involved lung tissue in lung adenocarcinoma patients
Cited by: 14
Author(s): Giulia Pintarelli, Sara Noci, Davide Maspero, Angela Pettinicchio, Matteo Dugo, Loris De Cecco, Matteo Incarbone, Davide Tosi, Luigi Santambrogio, Tommaso A. Dragani, Francesca Colombo
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-49550-x
ALKBH overexpression in head and neck cancer: potential target for novel anticancer therapy
Cited by: 41
Author(s): Tomaš Pilžys, Michał Marcinkowski, Wojciech Kukwa, Damian Garbicz, Małgorzata Dylewska, Karolina Ferenc, Adam Mieczkowski, Andrzej Kukwa, Ewa Migacz, Dominika Wołosz, Damian Mielecki, Arne Klungland, Jan Piwowarski, Jarosław Poznański, Elżbieta Grzesiuk
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-50070-x
Asexual thalli originated from sporophytic thalli via apomeiosis in the green seaweed Ulva
Cited by: 9
Author(s): Kensuke Ichihara, T. Yamazaki, Shinichi Miyamura, Masanori Hiraoka, Shigeyuki Kawano
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-50592-4
The PAX3-FOXO1 oncogene alters exosome miRNA content and leads to paracrine effects mediated by exosomal miR-486
Cited by: 29
Author(s): Farah Ghamloush, Sandra E. Ghayad, Ghina Rammal, Assil Fahs, Abeer J. Ayoub, Zeina Merabi, Mohamad Harajly, Hassan Zalzali, Raya Saab
Software Mentions: 2
Published: about 5 years ago
10.1186/1471-2407-14-46
A comprehensive look at transcription factor gene expression changes in colorectal adenomas
Cited by: 20
Author(s): Janine Vonlanthen, Michał Okoniewski, Mirco Menigatti, Elisa Cattaneo, Daniela Pellegrini-Ochsner, Ritva Haider, Josef Jiricny, Teresa Staiano, Federico Buffoli, Giancarlo Marra
Software Mentions: 2
Published: almost 11 years ago
10.1038/s41598-019-53346-4
Multi-technique comparison of atherogenic and MCD NASH models highlights changes in sphingolipid metabolism
Cited by: 29
Author(s): Sophie A. Montandon, Emmanuel Somm, Ursula Loizides‐Mangold, Claudio De Vito, Charna Dibner, François R. Jornayvaz
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-53427-4
Latitudinal Distributions and Controls of Bacterial Community Composition during the Summer of 2017 in Western Arctic Surface Waters (from the Bering Strait to the Chukchi Borderland)
Cited by: 8
Author(s): Jiyoung Lee, Sung‐Ho Kang, Eun Jin Yang, Alison M. Macdonald, Hyoung Min Joo, Jun Hyung Park, Kwangmin Kim, Gi Seop Lee, Ju-Hyoung Kim, Ju-Yeon Yoon, Seong-Su Kim, Jae-Hyun Lim, Il-Nam Kim
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-54545-9
Carcinoembryonic antigen cell adhesion molecule 6 (CEACAM6) in Pancreatic Ductal Adenocarcinoma (PDA): An integrative analysis of a novel therapeutic target
Cited by: 29
Author(s): Ritu Pandey, Muhan Zhou, Sameer Islam, Baowei Chen, Nelson W. Barker, Paul Langlais, Anup Srivastava, Moulun Luo, Laurence Cooke, Eric Weterings, Daruka Mahadevan
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12885-017-3109-8
Tumour-associated glial host cells display a stem-like phenotype with a distinct gene expression profile and promote growth of GBM xenografts
Cited by: 12
Author(s): Lina Leiss, Ercan Mutlu, Anne Margrete Øyan, Tao Yan, Oleg Tsinkalovsky, Linda Sleire, Kjell Petersen, Mohummad Aminur Rahman, Mireille Kayitesi Johannessen, Siddharta S. Mitra, Hege Karine Jacobsen, Krishna M. Talasila, Hrvoje Miletić, Inge Jonassen, Xingang Li, Nicolas H.C. Brons, Karl‐Henning Kalland, Jian Wang, Per Øyvind Enger
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12885-018-4781-z
Increased insulin-like growth factor 1 production by polyploid adipose stem cells promotes growth of breast cancer cells
Cited by: 14
Author(s): Roberta Fajka‐Boja, Annamária Marton, Ágota Tóth, Péter Blazsó, Vilmos Tubák, Balázs Bálint, István Nagy, Zoltán Hegedűs, Csaba Vízler, Róbert L. Katona
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-019-56877-y
Sox2 controls Schwann cell self-organization through fibronectin fibrillogenesis
Cited by: 19
Author(s): Elen Torres-Mejía, Dietrich Trümbach, Charlotte Kleeberger, Ulf Dornseifer, Tanja Orschmann, Theresa Bäcker, Jara Kerstin Brenke, Kamyar Hadian, Wolfgang Wurst, Hernán López‐Schier, Sabrina C. Desbordes
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-59188-9
Restricted immunological and cellular pathways are shared by murine models of chronic alcohol consumption
Cited by: 7
Author(s): Alyx Vogle, Tongqi Qian, Shijia Zhu, Elizabeth B. Burnett, Holger Fey, Zhibin Zhu, Ali Keshavarzian, Maliha Shaikh, Yujin Hoshida, Miran Kim, Costica Aloman
Software Mentions: 2
Published: almost 5 years ago
10.7554/eLife.23203
Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
Cited by: 171
Author(s): Sebastian Pott
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-020-60030-5
Neural Functions Play Different Roles in Triple Negative Breast Cancer (TNBC) and non-TNBC
Cited by: 12
Author(s): Renbo Tan, Haoyang Li, Zhenyu Huang, Yi Zhou, Mengchu Tao, Xin Gao, Ying Xu
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-60131-1
Fecal bacteria and metabolite responses to dietary lysozyme in a sow model from late gestation until lactation
Cited by: 11
Author(s): Shengyu Xu, Jiankai Shi, Yanpeng Dong, Zimei Li, Xiaoling Wu, Yan Lin, Lianqiang Che, Jian Li, Bin Feng, Zhengfeng Fang, Yong Zhuo, Jianping Wang, De Wu, Zhihua Ren, Yanping Shen
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12915-017-0459-2
A multi-trait systems approach reveals a response cascade to bleaching in corals
Cited by: 42
Author(s): Stephanie G. Gardner, Jean-Baptiste Raina, Matthew R. Nitschke, Daniel A. Nielsen, Michael Stat, Cherie A. Motti, Peter J. Ralph, Katherina Petrou
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-020-62045-4
Teriparatide relieves ovariectomy-induced hyperalgesia in rats, suggesting the involvement of functional regulation in primary sensory neurons by PTH-mediated signaling
Cited by: 8
Author(s): Tomoya Tanaka, Ryoko Takao-Kawabata, Aya Takakura, Yukari Shimazu, Momoko Nakatsugawa, Akitoshi Ito, Ji-Won Lee, Koh Kawasaki, Tadahiro Iimura
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-62175-9
HLA-A, -B, -C, -DRB1, -DQA1, and -DQB1 allele and haplotype frequencies defined by next generation sequencing in a population of East Croatia blood donors
Cited by: 6
Author(s): Stana Tokić, Veronika Žižková, Mario Štefanić, Ljubica Glavaš‐Obrovac, Saška Marczi, Marina Samardžija, Kateřina Sikorová, Martin Petřek
Software Mentions: 2
Published: over 4 years ago