cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/s12864-020-06999-9

Mining and evolution analysis of lateral organ boundaries domain (LBD) genes in Chinese white pear (Pyrus bretschneideri)
Cited by: 14
Author(s): Bobo Song, Zikai Tang, Xiaolong Li, Jiaming Li, Mingyue Zhang, Kunkun Zhao, Hainan Liu, Shaoling Zhang, Jun Wu
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-017-04228-0

Multiple origins and a narrow genepool characterise the African tea germplasm: concordant patterns revealed by nuclear and plastid DNA markers
Cited by: 19
Author(s): Moses C. Wambulwa, M. K. Meegahakumbura, S. M. Kamunya, Alice Muchugi, Michael Möller, Jie Liu, Jianchu Xu, Li D, Lian‐Ming Gao
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-06231-x

CREB Regulates Distinct Adaptive Transcriptional Programs in Astrocytes and Neurons
Cited by: 33
Author(s): Luis Pardo, Luis M. Valor, Abel Eraso-Pichot, Ángel Barco, Arantxa Golbano, Giles E. Hardingham, Roser Masgrau, Elena Galea
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-15-311

Microbiota diversity and gene expression dynamics in human oral biofilms
Cited by: 132
Author(s): Alfonso Benı́tez-Páez, Pedro Belda-Ferre, Áurea Simón-Soro, Álex Mira
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-017-11781-1

Sources of Variation in the Gut Microbial Community of Lycaeides melissa Caterpillars
Cited by: 28
Author(s): Samridhi Chaturvedi, Alexandre Rêgo, Lauren K. Lucas, Zachariah Gompert
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2164-12-526

Variation in chromosome copy number influences the virulence of Cryptococcus neoformans and occurs in isolates from AIDS patients
Cited by: 66
Author(s): Guanggan Hu, Joyce Wang, Jaehyuk Choi, Won Hee Jung, Iris Liu, Anastasia P. Litvintseva, Tihana Bicanic, Rajeev Aurora, Thomas G. Mitchell, John R. Perfect, James W. Kronstad
Software Mentions: 2
Published: about 15 years ago

10.1186/s12864-015-1659-1

Six host-range restricted poxviruses from three genera induce distinct gene expression profiles in an in vivo mouse model
Cited by: 12
Author(s): Kristy Offerman, Armin Deffur, Olivia Carulei, Robert J. Wilkinson, Nicola Douglass, Anna‐Lise Williamson
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-017-15344-2

Histone methyltransferase G9a is a key regulator of the starvation-induced behaviors in Drosophila melanogaster
Cited by: 9
Author(s): Kouhei Shimaji, Ryo Tanaka, Toru Maeda, Mamiko Ozaki, Hideki Yoshida, Yasuyuki Ohkawa, Tetsuya Sato, Mikita Suyama, Masamitsu Yamaguchi
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-16084-z

Transcriptome sequencing and differential gene expression analysis of the schistosome-transmitting snail Oncomelania hupensis inhabiting hilly and marshland regions
Cited by: 6
Author(s): Zhao Jun, Wang An-yun, Huabin Zhao, Yanhong Chen
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-17756-6

Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds
Cited by: 50
Author(s): Xiaoxi Meng, Shihai Xing, Loida M. Perez, Xiaojun Peng, Zhao QingYong, Edilberto D. Redoña, Cailin Wang, Zhaohua Peng
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-21063-z

Cerebral ischemia induces the aggregation of proteins linked to neurodegenerative diseases
Cited by: 56
Author(s): Anja Kahl, Ismary Blanco, Katherine Jackman, Juhi Baskar, Harihar Milaganur Mohan, Reunet Rodney-Sandy, Sheng Zhang, Costantino Iadecola, Karin Hochrainer
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-21992-9

The transcriptomic signature of different sexes in two protogynous hermaphrodites: Insights into the molecular network underlying sex phenotype in fish
Cited by: 18
Author(s): Alexandros Tsakogiannis, Tereza Manousaki, Jacques Lagnel, Aspasia Sterioti, M. Pavlidis, Nikos Papandroulakis, Constantinos C. Mylonas, Costas S. Tsigenopoulos
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-13-441

Transcriptomic and metabolomic profiling of chicken adipose tissue in response to insulin neutralization and fasting
Cited by: 87
Author(s): Bo Ji, Ben Ernest, Jessica Gooding, Suchita Das, Arnold M. Saxton, Jean Simon, Joëlle Dupont, Sonia Métayer-Coustard, Shawn R. Campagna, Brynn H. Voy
Software Mentions: 2
Published: about 14 years ago

10.1038/s41598-018-25672-6

Dramatic dysbalancing of the Wnt pathway in breast cancers
Cited by: 59
Author(s): Alexey Koval, Vladimir L. Katanaev
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-230X-13-131

Association of gut microbiota with post-operative clinical course in Crohn’s disease
Cited by: 88
Author(s): Neelendu Dey, David Soergel, Susanna Repo, Steven E. Brenner
Software Mentions: 2
Published: about 13 years ago

10.1038/s41598-018-27168-9

Environmental legacy contributes to the resilience of methane consumption in a laboratory microcosm system
Cited by: 10
Author(s): Sascha Krause, Marion Meima-Franke, Annelies J. Veraart, Guohao Ren, Adrian Ho, Paul L. E. Bodelier
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-230X-14-55

DNA methylation subgroups and the CpG island methylator phenotype in gastric cancer: a comprehensive profiling approach
Cited by: 34
Author(s): Marie Loh, Natalia Liem, Aparna Vaithilingam, Pei Li Lim, Nur Sabrina Sapari, Eiram Elahi, Zuan Yu Mok, Chee Leong Cheng, Benedict Yan, Brendan Pang, Manuel Salto-Tellez, Wei Peng Yong, Barry Iacopetta, Richie Soong
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-018-28085-7

Diversity among blaKPC-containing plasmids in Escherichia coli and other bacterial species isolated from the same patients
Cited by: 25
Author(s): Tracy H. Hazen, Roberta T. Mettus, Christi L. McElheny, Sarah L. Bowler, Sushma Nagaraj, Yohei Doi, David A. Rasko
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-28957-y

Comprehensive analysis of competitive endogenous RNAs network associated with head and neck squamous cell carcinoma
Cited by: 51
Author(s): Xiaonan Fang, Miao Yin, Hua Li, Cheng Liang, Cong Xu, Yang Gao, Huaxiang Zhang
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-30569-5

Klebsiella oxytoca expands in cancer cachexia and acts as a gut pathobiont contributing to intestinal dysfunction
Cited by: 66
Author(s): Sarah A. Pötgens, Hélène Brossel, Martina Sboarina, Émilie Catry, Patrice D. Cani, Audrey M. Neyrinck, Laure B. Bindels
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-31428-z

Schlafen2 mutation in mice causes an osteopetrotic phenotype due to a decrease in the number of osteoclast progenitors
Cited by: 9
Author(s): Ibrahim Che Omar, Gali Guterman-Ram, Dolev Rahat, Yuval Tabach, Michael Berger, Noam Levaot
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-31706-w

Bacterial communities and potential waterborne pathogens within the typical urban surface waters
Cited by: 47
Author(s): Decai Jin, Xiao Kong, Bingjian Cui, Shulan Jin, Yonghong Xie, Xingrun Wang, Ye Deng
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-32019-8

Gene expression analysis of Atlantic salmon gills reveals mucin 5 and interleukin 4/13 as key molecules during amoebic gill disease
Cited by: 36
Author(s): Mar Marcos-López, Josep Àlvar Calduch-Giner, Luca Mirimin, Eugene MacCarthy, H. D. Rodger, Ian O’Connor, Ariadna Sitjà‐Bobadilla, Jaume Pérez‐Sánchez, M. Carla Piazzon
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-34614-1

Genome-wide Identification of Jatropha curcas MAPK, MAPKK, and MAPKKK Gene Families and Their Expression Profile Under Cold Stress
Cited by: 17
Author(s): Haibo Wang, Ming Gong, Junyun Guo, Hu Xiu, Yong Gao, Chao Liu, Dong-Qin Dai, Lizhou Tang
Software Mentions: 2
Published: about 8 years ago

10.1002/advs.202003049

Modeling Heterogeneity of Triple‐Negative Breast Cancer Uncovers a Novel Combinatorial Treatment Overcoming Primary Drug Resistance
Cited by: 11
Author(s): Fabienne Lamballe, Fahmida Ahmad, Yaron Vinik, Olivier Castellanet, Fabrice Daian, Anna Katharina Müller, Ulrike A. Köhler, Anne Laure Bailly, Emmanuelle Josselin, Rémy Castellano, Christelle Cayrou, Emmanuelle Charafe‐Jauffret, Gordon B. Mills, Vincent Géli, Jean-Paul Borg, Sima Lev, Flavio Maina
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2407-14-46

A comprehensive look at transcription factor gene expression changes in colorectal adenomas
Cited by: 20
Author(s): Janine Vonlanthen, Michał Okoniewski, Mirco Menigatti, Elisa Cattaneo, Daniela Pellegrini-Ochsner, Ritva Haider, Josef Jiricny, Teresa Staiano, Federico Buffoli, Giancarlo Marra
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-019-42341-4

Biological ingredient complement chemical ingredient in the assessment of the quality of TCM preparations
Cited by: 12
Author(s): Hong Bai, Xianhong Li, Hongjun Li, Jialiang Yang, Kang Ning
Software Mentions: 2
Published: over 7 years ago

10.1186/s12885-017-3109-8

Tumour-associated glial host cells display a stem-like phenotype with a distinct gene expression profile and promote growth of GBM xenografts
Cited by: 12
Author(s): Lina Leiss, Ercan Mutlu, Anne Margrete Øyan, Tao Yan, Oleg Tsinkalovsky, Linda Sleire, Kjell Petersen, Mohummad Aminur Rahman, Mireille Kayitesi Johannessen, Siddharta S. Mitra, Hege Karine Jacobsen, Krishna M. Talasila, Hrvoje Miletić, Inge Jonassen, Xingang Li, Nicolas H.C. Brons, Karl‐Henning Kalland, Jian Wang, Per Øyvind Enger
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12885-018-4781-z

Increased insulin-like growth factor 1 production by polyploid adipose stem cells promotes growth of breast cancer cells
Cited by: 14
Author(s): Roberta Fajka‐Boja, Annamária Marton, Ágota Tóth, Péter Blazsó, Vilmos Tubák, Balázs Bálint, István Nagy, Zoltán Hegedűs, Csaba Vízler, Róbert L. Katona
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-019-47297-z

Clonal Evolution and Changes in Two AML Patients Detected with A Novel Single-Cell DNA Sequencing Platform
Cited by: 24
Author(s): Liwen Xu, Robert Durruthy-Durruthy, Dennis J. Eastburn, Maurizio Pellegrino, Omid Shah, Everett Meyer, James L. Zehnder
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-49648-2

Cigarette smoke alters the transcriptome of non-involved lung tissue in lung adenocarcinoma patients
Cited by: 14
Author(s): Giulia Pintarelli, Sara Noci, Davide Maspero, Angela Pettinicchio, Matteo Dugo, Loris De Cecco, Matteo Incarbone, Davide Tosi, Luigi Santambrogio, Tommaso A. Dragani, Francesca Colombo
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-49550-x

ALKBH overexpression in head and neck cancer: potential target for novel anticancer therapy
Cited by: 41
Author(s): Tomaš Pilžys, Michał Marcinkowski, Wojciech Kukwa, Damian Garbicz, Małgorzata Dylewska, Karolina Ferenc, Adam Mieczkowski, Andrzej Kukwa, Ewa Migacz, Dominika Wołosz, Damian Mielecki, Arne Klungland, Jan Piwowarski, Jarosław Poznański, Elżbieta Grzesiuk
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-50070-x

Asexual thalli originated from sporophytic thalli via apomeiosis in the green seaweed Ulva
Cited by: 9
Author(s): Kensuke Ichihara, T. Yamazaki, Shinichi Miyamura, Masanori Hiraoka, Shigeyuki Kawano
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-50592-4

The PAX3-FOXO1 oncogene alters exosome miRNA content and leads to paracrine effects mediated by exosomal miR-486
Cited by: 29
Author(s): Farah Ghamloush, Sandra E. Ghayad, Ghina Rammal, Assil Fahs, Abeer J. Ayoub, Zeina Merabi, Mohamad Harajly, Hassan Zalzali, Raya Saab
Software Mentions: 2
Published: about 7 years ago

10.18632/oncotarget.27400

A pan-cancer transcriptome analysis identifies replication fork and innate immunity genes as modifiers of response to the CHK1 inhibitor prexasertib
Cited by: 11
Author(s): Wayne Blosser, Jack Dempsey, Ann M. McNulty, Xi Rao, Philip J. Ebert, Caitlin D. Lowery, Philip W. Iversen, Yue Webster, Gregory P. Donoho, Xueqian Gong, Farhana F. Merzoug, Sean G. Buchanan, Karsten Boehnke, Chunping Yu, Xintian You, Richard P. Beckmann, Wenjuan Wu, Samuel C. McNeely, Aimee Bence Lin, Ricardo Martínez
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-53346-4

Multi-technique comparison of atherogenic and MCD NASH models highlights changes in sphingolipid metabolism
Cited by: 29
Author(s): Sophie A. Montandon, Emmanuel Somm, Ursula Loizides‐Mangold, Claudio De Vito, Charna Dibner, François R. Jornayvaz
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-53427-4

Latitudinal Distributions and Controls of Bacterial Community Composition during the Summer of 2017 in Western Arctic Surface Waters (from the Bering Strait to the Chukchi Borderland)
Cited by: 8
Author(s): Jiyoung Lee, Sung‐Ho Kang, Eun Jin Yang, Alison M. Macdonald, Hyoung Min Joo, Jun Hyung Park, Kwangmin Kim, Gi Seop Lee, Ju-Hyoung Kim, Ju-Yeon Yoon, Seong-Su Kim, Jae-Hyun Lim, Il-Nam Kim
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-54545-9

Carcinoembryonic antigen cell adhesion molecule 6 (CEACAM6) in Pancreatic Ductal Adenocarcinoma (PDA): An integrative analysis of a novel therapeutic target
Cited by: 29
Author(s): Ritu Pandey, Muhan Zhou, Sameer Islam, Baowei Chen, Nelson W. Barker, Paul Langlais, Anup Srivastava, Moulun Luo, Laurence Cooke, Eric Weterings, Daruka Mahadevan
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12915-017-0459-2

A multi-trait systems approach reveals a response cascade to bleaching in corals
Cited by: 42
Author(s): Stephanie G. Gardner, Jean-Baptiste Raina, Matthew R. Nitschke, Daniel A. Nielsen, Michael Stat, Cherie A. Motti, Peter J. Ralph, Katherina Petrou
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.27712

Down syndrome iPSC model: endothelial perspective on tumor development
Cited by: 2
Author(s): Mariana Perepitchka, Yekaterina Galat, Igor P. Beletsky, Philip M. Iannaccone, Vasiliy Galat
Software Mentions: 2
Published: about 6 years ago

10.1186/s12915-014-0086-0

A comprehensive evaluation of rodent malaria parasite genomes and gene expression
Cited by: 226
Author(s): Thomas D. Otto, Ulrike Böhme, Andrew P. Jackson, Martin Hunt, Blandine Franke-Fayard, Wieteke A. M. Hoeijmakers, Agnieszka A. Religa, Lauren Robertson, Mandy Sanders, Solabomi A. Ogun, Deirdre Cunningham, Annette Erhart, Oliver Billker, Shahid M. Khan, Hendrik G. Stunnenberg, Jean Langhorne, Anthony A. Holder, Andrew P. Waters, Chris Newbold, Arnab Pain, Matthew Berriman, Chris J. Janse
Software Mentions: 2
Published: about 12 years ago

10.1186/s12859-016-1404-z

ConEVA: a toolbox for comprehensive assessment of protein contacts
Cited by: 23
Author(s): Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-019-56877-y

Sox2 controls Schwann cell self-organization through fibronectin fibrillogenesis
Cited by: 19
Author(s): Elen Torres-Mejía, Dietrich Trümbach, Charlotte Kleeberger, Ulf Dornseifer, Tanja Orschmann, Theresa Bäcker, Jara Kerstin Brenke, Kamyar Hadian, Wolfgang Wurst, Hernán López‐Schier, Sabrina C. Desbordes
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-59188-9

Restricted immunological and cellular pathways are shared by murine models of chronic alcohol consumption
Cited by: 7
Author(s): Alyx Vogle, Tongqi Qian, Shijia Zhu, Elizabeth B. Burnett, Holger Fey, Zhibin Zhu, Ali Keshavarzian, Maliha Shaikh, Yujin Hoshida, Miran Kim, Costica Aloman
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-60030-5

Neural Functions Play Different Roles in Triple Negative Breast Cancer (TNBC) and non-TNBC
Cited by: 12
Author(s): Renbo Tan, Haoyang Li, Zhenyu Huang, Yi Zhou, Mengchu Tao, Xin Gao, Ying Xu
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-60131-1

Fecal bacteria and metabolite responses to dietary lysozyme in a sow model from late gestation until lactation
Cited by: 11
Author(s): Shengyu Xu, Jiankai Shi, Yanpeng Dong, Zimei Li, Xiaoling Wu, Yan Lin, Lianqiang Che, Jian Li, Bin Feng, Zhengfeng Fang, Yong Zhuo, Jianping Wang, De Wu, Zhihua Ren, Yanping Shen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62045-4

Teriparatide relieves ovariectomy-induced hyperalgesia in rats, suggesting the involvement of functional regulation in primary sensory neurons by PTH-mediated signaling
Cited by: 8
Author(s): Tomoya Tanaka, Ryoko Takao-Kawabata, Aya Takakura, Yukari Shimazu, Momoko Nakatsugawa, Akitoshi Ito, Ji-Won Lee, Koh Kawasaki, Tadahiro Iimura
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62175-9

HLA-A, -B, -C, -DRB1, -DQA1, and -DQB1 allele and haplotype frequencies defined by next generation sequencing in a population of East Croatia blood donors
Cited by: 6
Author(s): Stana Tokić, Veronika Žižková, Mario Štefanić, Ljubica Glavaš‐Obrovac, Saška Marczi, Marina Samardžija, Kateřina Sikorová, Martin Petřek
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62886-z

Transcriptome analysis reveals differentially expressed genes associated with high rates of egg production in chicken hypothalamic-pituitary-ovarian axis
Cited by: 35
Author(s): Suchismita Mishra, Binlong Chen, Qing Zhu, Zhongxian Xu, Chunyou Ning, Huadong Yin, Yan Wang, Xiaoling Zhao, Xiaolan Fan, Mingyao Yang, Deying Yang, Qingyong Ni, Yan Li, Mingwang Zhang, Diyan Li
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63579-3

Hepatocyte-specific deletion of Pparα promotes NAFLD in the context of obesity
Cited by: 69
Author(s): Marion Régnier, Arnaud Polizzi, Sarra Smati, Céline Lukowicz, Anne Fougerat, Yannick Lippi, Edwin Fouché, Frédèric Lasserre, Claire Naylies, Colette Bétoulières, Valentin Barquissau, Etienne Mouisel, Justine Bertrand‐Michel, Aurélie Batut, Talal Al Saati, Cécile Canlet, Marie Tremblay-Franco, Sandrine Ellero‐Simatos, Dominique Langin, Catherine Postic, Walter Wahli, Nicolas Loiseau, Hervé Guillou, Alexandra Montagner
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-015-0656-3

groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data
Cited by: 56
Author(s): Minho Chae, Charles G. Danko, W. Lee Kraus
Software Mentions: 2
Published: over 11 years ago

10.1186/s12859-017-1945-9

Explorative visual analytics on interval-based genomic data and their metadata
Cited by: 4
Author(s): Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-66093-8

Aquaponics using a fish farm effluent shifts bacterial communities profile in halophytes rhizosphere and endosphere
Cited by: 7
Author(s): Vanessa Oliveira, Patrícia Martins, Bruna Marques, Daniel F. R. Cleary, Ana I. Lillebø, Ricardo Calado
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-017-1637-5

Drug repositioning for enzyme modulator based on human metabolite-likeness
Cited by: 10
Author(s): Yoon Hyeok Lee, Hojae Choi, Seongyong Park, Boah Lee, Gwan‐Su Yi
Software Mentions: 2
Published: over 9 years ago

10.5713/ajas.19.0221

Effects of the dietary digestible fiber-to-starch ratio on pellet quality, growth and cecal microbiota of Angora rabbits
Cited by: 3
Author(s): Yang Gao, Fei Zhao, Ting He, Jiantao Li, Dan Guo
Software Mentions: 2
Published: over 6 years ago

10.1186/s13075-017-1474-y

VISTA deficiency attenuates antibody-induced arthritis and alters macrophage gene expression in response to simulated immune complexes
Cited by: 31
Author(s): Sabrina Ceeraz, Susan K. Eszterhas, Petra Sergent, David A. Armstrong, Alix Ashare, Thomas Broughton, Li Wang, Dov A. Pechenick, Christopher M. Burns, Randolph J. Noelle, Matthew P. Vincenti, Roy A. Fava
Software Mentions: 2
Published: almost 9 years ago

10.1007/s00592-017-1059-x

Pancreatic imaging using an antibody fragment targeting the zinc transporter type 8: a direct comparison with radio-iodinated Exendin-4
Cited by: 10
Author(s): Olof Eriksson, Olle Korsgren, Ram Kumar Selvaraju, Marjorie Mollaret, Yann de Boysson, Fabrice Chimienti, Mohamed Altai
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-020-69418-9

iPSC-derived progenitor stromal cells provide new insights into aberrant musculoskeletal development and resistance to cancer in down syndrome
Cited by: 4
Author(s): Yekaterina Galat, Mariana Perepitchka, Irina Elcheva, Stephen Iannaccone, Philip M. Iannaccone, Vasiliy Galat
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-71822-0

Effects of time and temperature during melanging on the volatile profile of dark chocolate
Cited by: 4
Author(s): Caitlin Clark, Harmonie M. Bettenhausen, Adam L. Heuberger, Jeffrey P. Miller, Linxing Yao, Margaret E. Stone
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-71672-w

A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteome
Cited by: 6
Author(s): Sushmitha Vijaya Kumar, Paul E. Abraham, Gregory B. Hurst, Karuna Chourey, Amber N. Bible, Robert L. Hettich, Mitchel J. Doktycz, Jennifer L. Morrell‐Falvey
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-72078-4

Esterified carotenoids are synthesized in petals of carnation (Dianthus caryophyllus) and accumulate in differentiated chromoplasts
Cited by: 10
Author(s): Luna Iijima, Sanae Kishimoto, Akemi Ohmiya, Masafumi Yagi, Emi Okamoto, Taira Miyahara, Takashi Tsujimoto, Yoshihiro Ozeki, Nahoko Uchiyama, Takashi Hakamatsuka, Takanobu Kouno, Emilio Cano, Mitsuru Shimizu, Masahiro Nishihara
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-72172-7

Hepatic lipocalin 2 promotes liver fibrosis and portal hypertension
Cited by: 25
Author(s): Jiegen Chen, Josepmaria Argemí, Gemma Òdena, Mingjiang Xu, Yan Cai, Veronica Massey, Austin Parrish, Rajanikanth Vadigepalli, José Altamirano, Joaquín Cabezas, Pere Ginès, Juan Caballería, Natasha T. Snider, Pau Sancho‐Bru, Shizuo Akira, Ivan Rusyn, Bin Gao, R. Bataller
Software Mentions: 2
Published: about 6 years ago

10.1186/ar4369

Proteomic profiling and functional characterization of early and late shoulder osteoarthritis
Cited by: 32
Author(s): John Paul Wanner, Roopashree Subbaiah, Yelenna Skomorovska-Prokvolit, Yousef Shishani, Éric Boilard, Sujatha Mohan, Robert J. Gillespie, Masaru Miyagi, Reuben Gobezie
Software Mentions: 2
Published: almost 14 years ago

10.1007/s00204-021-03008-0

Integration of transcriptome analysis with pathophysiological endpoints to evaluate cigarette smoke toxicity in an in vitro human airway tissue model
Cited by: 8
Author(s): Rui Xiong, Yue Wu, Qiangen Wu, Levan Muskhelishvili, Kelly J. Davis, Priya Tripathi, Ying Chen, Tao Chen, Matthew Bryant, Hans Rosenfeldt, Sheila M. Healy, Xuefei Cao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-73823-5

Circadian regulation of diel vertical migration (DVM) and metabolism in Antarctic krill Euphausia superba
Cited by: 5
Author(s): Fabio Piccolin, Lisa Pitzschler, Alberto Biscontin, So Kawaguchi, Bettina Meyer
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-75518-3

Establishment and characterisation of testicular cancer patient-derived xenograft models for preclinical evaluation of novel therapeutic strategies
Cited by: 3
Author(s): Gerda de Vries, Ximena Rosas-Plaza, Gert Jan Meersma, Vincent Christiaan Leeuwenburgh, Klaas Kok, Albert Suurmeijer, Marcel A.T.M. van Vugt, Jourik A. Gietema, Steven de Jong
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-78452-6

The potential role of Arhgef33 RhoGEF in foveal development in the zebra finch retina
Cited by: 7
Author(s): T Sugiyama, Haruka Yamamoto, Tetsuo Kon, Taro Chaya, Yoshihiro Omori, Yutaka Suzuki, Kentaro Abe, Dai Watanabe, Takahisa Furukawa
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-78351-w

Multi-omic approach provides insights into osmoregulation and osmoconformation of the crab Scylla paramamosain
Cited by: 18
Author(s): Jun Niu, Xue Lei Hu, Jack Chi-Ho Ip, Ka Yan, Yueh‐Bih Tang, Yaqin Wang, Jing Qin, Jian‐Wen Qiu, Ting‐Fung Chan, Ka Hou Chu
Software Mentions: 2
Published: almost 6 years ago

10.1128/AEM.00515-17

Microbiota in Exhaled Breath Condensate and the Lung
Cited by: 14
Author(s): Laura Glendinning, Steven H. Wright, Peter Tennant, Andrew C. Gill, David Collie, Gerry McLachlan
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-021-82538-0

Alterations in the gut bacterial microbiome in people with type 2 diabetes mellitus and diabetic retinopathy
Cited by: 83
Author(s): Taraprasad Das, Rajagopalaboopathi Jayasudha, SamaKalyana Chakravarthy, Gumpili Sai Prashanthi, Archana Bhargava, Mudit Tyagi, Padmaja Kumari Rani, Rajeev Reddy Pappuru, Savitri Sharma, Sisinthy Shivaji
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-82801-4

Drosophila oocyte proteome composition covaries with female mating status
Cited by: 9
Author(s): Caitlin E. McDonough-Goldstein, Scott Pitnick, Steve Dorus
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-82640-3

The distribution of antibiotic resistance genes in chicken gut microbiota commensals
Cited by: 26
Author(s): Helena Juřicová, Jitka Matiasovicova, Tereza Kubasová, Darina Čejková, Ivan Rychlı́k
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-83380-0

The acute transcriptional responses to dietary methionine restriction are triggered by inhibition of ternary complex formation and linked to Erk1/2, mTOR, and ATF4
Cited by: 15
Author(s): Kirsten P. Stone, Sujoy Ghosh, Jean Paul Kovalik, Manda Orgeron, Desiree Wanders, Landon C. Sims, Thomas W. Gettys
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-83913-7

CIBERSORT analysis of TCGA and METABRIC identifies subgroups with better outcomes in triple negative breast cancer
Cited by: 47
Author(s): Kelly E. Craven, Yesim Gökmen‐Polar, Sunil Badve
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.8176

Systematic evaluation of the gut microbiome of swamp eel (Monopterus albus) by 16S rRNA gene sequencing
Cited by: 6
Author(s): Xuan Chen, Shouguo Fang, Lili Wei, Qiuyan Zhong
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.6526

TarSynFlow, a workflow for bacterial genome comparisons that revealed genes putatively involved in the probiotic character ofShewanella putrefaciensstrain Pdp11
Cited by: 3
Author(s): Pedro Seoane, Silvana Tapia‐Paniagua, Rocío Bautista, Elena Alcaide, Consuelo Esteve, Eduardo Martínez‐Manzanares, M.C. Balebona, M. Gonzalo Claros, Miguel A. Moriñigo
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.3698

Genomic and functional analysis ofRomboutsia ilealisCRIBTreveals adaptation to the small intestine
Cited by: 74
Author(s): J. Gerritsen, Bastian Hornung, Bernadet Renckens, Sacha A. F. T. van Hijum, Vítor A. P. Martins dos Santos, Ger T. Rijkers, Peter J. Schaap, Willem M. de Vos, Hauke Smidt
Software Mentions: 2
Published: about 9 years ago

10.7717/peerj.8101

Co-expression analysis and ceRNA network reveal eight novel potential lncRNA biomarkers in hepatocellular carcinoma
Cited by: 6
Author(s): Renchao Zou, Zhitian Shi, Shufeng Xiao, Ke Yang, Haoran Tang, Taihu Wu, Zhitang Guo, Ni Fan, Sanqi An, Lin Wang
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.10678

TET2 mutations in acute myeloid leukemia: a comprehensive study in patients of Sindh, Pakistan
Cited by: 4
Author(s): Abdul Rehman Shaikh, Ikram Uddin Ujjan, Muhammad Irfan, Arshi Naz, Tahir Shamsi, Muhammad Tariq Masood Khan, Muhammad Shakeel
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.1597

Comparative morphology of the mouthparts of the megadiverse South African monkey beetles (Scarabaeidae: Hopliini): feeding adaptations and guild structure
Cited by: 20
Author(s): Florian Karolyi, Teresa Hansal, Harald W. Krenn, Jonathan F. Colville
Software Mentions: 2
Published: almost 11 years ago

10.7717/peerj.9054

Intra-lake response of Arcellinida (testate lobose amoebae) to gold mining-derived arsenic contamination in northern Canada: Implications for environmental monitoring
Cited by: 5
Author(s): Nawaf A. Nasser, R. Timothy Patterson, Jennifer M. Galloway, Hendrik Falck
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.10053

Silicon flow from root to shoot in pepper: a comprehensive in silico analysis reveals a potential linkage between gene expression and hormone signaling that stimulates plant growth and metabolism
Cited by: 9
Author(s): Fernando Carlos Gómez-Meriño, Libia Iris Trejo-Téllez, Atonaltzin García-Jiménez, Hugo Fernando Escobar-Sepúlveda, Sara Monzerrat Ramírez-Olvera
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.7380

Construction and integrated analysis of crosstalking ceRNAs networks in laryngeal squamous cell carcinoma
Cited by: 18
Author(s): Yuehui Liu, Fan Ye
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.11386

Prokaryotic communities from a lava tube cave in La Palma Island (Spain) are involved in the biogeochemical cycle of major elements
Cited by: 18
Author(s): Jose Luis Gonzalez-Pimentel, Tamara Martin-Pozas, Valme Jurado, Ana Z. Miller, Ana Teresa Caldeira, Octavio Fernandez-Lorenzo, Sergio Sánchez‐Moral, Cesáreo Sáiz‐Jiménez
Software Mentions: 2
Published: over 5 years ago

10.3390/pathogens6040045

The Use of Hyperimmune Chicken Reference Sera Is Not Appropriate for the Validation of Influenza Pseudotype Neutralization Assays
Cited by: 0
Author(s): Francesca Ferrara, Eleonora Molesti, Simon D. Scott, Giovanni Cattoli, Nigel Temperton
Software Mentions: 2
Published: about 9 years ago

10.14814/phy2.14171

The mitochondrial‐derived peptide MOTS‐c is a regulator of plasma metabolites and enhances insulin sensitivity
Cited by: 33
Author(s): Su-Jeong Kim, Brendan Miller, Hemal H. Mehta, Jialin Xiao, Junxiang Wan, Thalida Em Arpawong, Kelvin Yen, Pinchas Cohen
Software Mentions: 2
Published: over 7 years ago

10.1186/s13071-019-3405-z

Interpreting mosquito feeding patterns in Australia through an ecological lens: an analysis of blood meal studies
Cited by: 18
Author(s): Eloise Stephenson, Amanda K. Murphy, Cassie C. Jansen, Alison J. Peel, Hamish McCallum
Software Mentions: 2
Published: over 7 years ago

10.1186/s13071-016-1642-y

CAP protein superfamily members in Toxocara canis
Cited by: 6
Author(s): Andreas J. Stroehlein, Neil D. Young, Ross S. Hall, Pasi K. Korhonen, Andreas Hofmann, Paul W. Sternberg, Abdul Jabbar, Robin B. Gasser
Software Mentions: 2
Published: over 10 years ago

10.1111/tpj.13601

Live‐cell <scp>CRISPR</scp> imaging in plants reveals dynamic telomere movements
Cited by: 101
Author(s): Steven Dreißig, Simon Schiml, Patrick Schindele, Oda Weiss, Twan Rutten, Veit Schubert, Evgeny Gladilin, Michael Florian Mette, Holger Puchta, Andreas Houben
Software Mentions: 2
Published: over 9 years ago

10.3390/plants10081720

Comparison of Drought and Heat Resistance Strategies among Six Populations of Solanum chilense and Two Cultivars of Solanum lycopersicum
Cited by: 9
Author(s): Rémi Blanchard-Gros, Servane Bigot, Juan-Pablo Martínez, Stanley Lutts, Gea Guerriero, Muriel Quinet
Software Mentions: 2
Published: about 5 years ago

10.3390/plants8120589

Secoiridoids Metabolism Response to Wounding in Common Centaury (Centaurium erythraea Rafn) Leaves
Cited by: 5
Author(s): Jelena Božunović, Marijana Škorić, Dragana Matekalo, Suzana Živković, Milan Dragićević, Neda Aničić, Biljana Filipović, Tijana Banjanac, Branislav Šiler, Danijela Mišić
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13071-018-3007-1

Hints on T cell responses in a fish-parasite model: Enteromyxum leei induces differential expression of T cell signature molecules depending on the organ and the infection status
Cited by: 24
Author(s): M. Carla Piazzon, Itziar Estensoro, Josep Àlvar Calduch-Giner, R. del Pozo, Amparo Picard‐Sánchez, Jaume Pérez‐Sánchez, Ariadna Sitjà‐Bobadilla
Software Mentions: 2
Published: over 8 years ago

10.3390/plants9101370

Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye Seeds
Cited by: 5
Author(s): Lei Xiong, Wenhui Liu, Junlong Zhao, Minghong You, Chaohui Xiong, Yi Xiong, Yanli Xiong, Qingqing Yu, Shiqie Bai, Xiao Ma
Software Mentions: 2
Published: about 6 years ago

10.1186/s13071-019-3506-8

Anopheles aquasalis transcriptome reveals autophagic responses to Plasmodium vivax midgut invasion
Cited by: 7
Author(s): Rosa Amélia Gonçalves Santana, Maurício Oliveira, Iria Cabral, Rubens Celso Andrade Silva, Débora Raysa Teixeira de Sousa, L. S. Ferreira, Marcus Vinícius Guimarães Lacerda, Wuelton Marcelo Monteiro, Patrícia Abrantes, Maria das Graças Vale Barbosa Guerra, Henrique Silveira
Software Mentions: 2
Published: over 7 years ago

10.3390/plants9030405

De novo Sequencing and Analysis of Salvia hispanica Tissue-Specific Transcriptome and Identification of Genes Involved in Terpenoid Biosynthesis
Cited by: 9
Author(s): James Wimberley, Joseph Cahill, Hagop S. Atamian
Software Mentions: 2
Published: over 6 years ago

10.3897/zookeys.540.9649

Characterisation of the chemical profiles of Brazilian and Andean morphotypes belonging to the Anastrepha fraterculus complex (Diptera, Tephritidae)
Cited by: 13
Author(s): Lucie Vaníčková, Radka Břízová, Antonio Pompeiano, Luana Lima Ferreira, Nathaly Costa de Aquino, Raphael de Farias Tavares, Laura D. Rodriguez, Adriana de Lima Mendonça, Nelson A. Canal, Ruth R. Do Nascimento
Software Mentions: 2
Published: almost 11 years ago

10.12688/wellcomeopenres.15452.1

Untargeted metabolomics to understand the basis of phenotypic differences in amphotericin B-resistant Leishmania parasites
Cited by: 10
Author(s): Andrew W. Pountain, Michael P. Barrett
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pbio.1000494

Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome
Cited by: 175
Author(s): Yong E. Zhang, Maria D. Vibranovski, Patrick Landback, Gabriel Marais, Manyuan Long
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pbio.2006519

Copper-dependent amino oxidase 3 governs selection of metabolic fuels in adipocytes
Cited by: 41
Author(s): Haojun Yang, Martina Ralle, Michael J. Wolfgang, Neha Dhawan, Jason L. Burkhead, Susana Rodriguez, Jack H. Kaplan, G. William Wong, Norman J. Haughey, Svetlana Lutsenko
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-021-85230-5

Modeling preeclampsia using human induced pluripotent stem cells
Cited by: 25
Author(s): Mariko Horii, Robert Morey, Tony Bui, Ojeni Touma, Katelyn N. Nelson, Hee-Young Cho, Hannah Rishik, Louise C. Laurent, Mana M. Parast
Software Mentions: 2
Published: over 5 years ago

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Papers Mentioning gplots 2,122