cran: glmnet | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0185380

Recapitulation of Ayurveda constitution types by machine learning of phenotypic traits
Cited by: 24
Author(s): Prabhat Tiwari, Rintu Kutum, Tavpritesh Sethi, Ankita Shrivastava, Bhushan Girase, Shilpi Aggarwal, Rutuja Patil, Dhiraj Agarwal, Pramod Gautam, Anurag Agrawal, Debasis Dash, Saurabh Ghosh, Sanjay Juvekar, Mitali Mukerji, Bhavana Prasher
Software Mentions: 7
Published: almost 9 years ago

10.1128/mBio.00885-17

Pathogenicity Locus, Core Genome, and Accessory Gene Contributions to <i>Clostridium difficile</i> Virulence
Cited by: 42
Author(s): Brittany B. Lewis, Rebecca A. Carter, Lilan Ling, Ingrid Leiner, Ying Taur, Mini Kamboj, Erik R. Dubberke, João B. Xavier, Eric G. Pamer
Software Mentions: 7
Published: almost 9 years ago

10.1186/s10194-018-0863-1

The role of personality, disability and physical activity in the development of medication-overuse headache: a prospective observational study
Cited by: 15
Author(s): Louise Schlosser Mose, Susanne S. Pedersen, Birgit Debrabant, Rigmor Jensen, Bibi Gram
Software Mentions: 7
Published: about 8 years ago

10.18632/aging.104122

Prognostic roles of metabolic reprogramming-associated genes in patients with hepatocellular carcinoma
Cited by: 12
Author(s): Lijuan Cui, Xue Hai, Zhitong Wen, Zhihong Lu, Yunfeng Liu, Yi Zhang
Software Mentions: 7
Published: almost 6 years ago

10.3389/fgene.2019.00662

Cascaded Wx: A Novel Prognosis-Related Feature Selection Framework in Human Lung Adenocarcinoma Transcriptomes
Cited by: 6
Author(s): Bonggun Shin, Sung Soo Park, Ji Hyung Hong, Ho Jung An, Sang Hoon Chun, Kilsoo Kang, Young Ho Ahn, Yoon Ho Ko, Keunsoo Kang
Software Mentions: 7
Published: about 7 years ago

10.3389/fgene.2019.00579

A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction
Cited by: 107
Author(s): Yi‐Hui Zhou, Paul J. Gallins
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-021-88177-9

A three-feature prediction model for metastasis-free survival after surgery of localized clear cell renal cell carcinoma
Cited by: 7
Author(s): Kalle Mattila, Teemu D. Laajala, Sara Tornberg, Tuomas P. Kilpeläinen, Paula Vainio, Otto Ettala, Peter J. Boström, Harry Nísen, Laura L. Elo, Panu M. Jaakkola
Software Mentions: 7
Published: over 5 years ago

10.2196/16153

Explanatory Model of Dry Eye Disease Using Health and Nutrition Examinations: Machine Learning and Network-Based Factor Analysis From a National Survey
Cited by: 8
Author(s): Sang Min Nam, Thomas A Peterson, Atul J. Butte, Kyoung Yul Seo, Hyun Wook Han
Software Mentions: 7
Published: over 6 years ago

10.3389/fonc.2020.01409

Development and Validation of a Tumor Mutation Burden–Related Immune Prognostic Model for Lower-Grade Glioma
Cited by: 43
Author(s): Yin Wu, Xingjun Jiang, Jun Tan, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Xianyong Fu, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Chao Ren, Guihua Tang
Software Mentions: 7
Published: almost 6 years ago

10.3389/fcell.2021.618313

Long Non-coding RNA Expression Patterns in Stomach Adenocarcinoma Serve as an Indicator of Tumor Mutation Burden and Are Associated With Tumor-Infiltrating Lymphocytes and Microsatellite Instability
Cited by: 6
Author(s): Dongdong Yang, Jianan Yu, Bing Han, Yue Sun, Steven Mo, Jing Hu
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pgen.1008855

Estimation of non-null SNP effect size distributions enables the detection of enriched genes underlying complex traits
Cited by: 8
Author(s): Wei Cheng, Sohini Ramachandran, Lorin Crawford
Software Mentions: 7
Published: about 6 years ago

10.1186/s40560-021-00525-z

Machine learning-based prediction models for accidental hypothermia patients
Cited by: 4
Author(s): Yohei Okada, Tasuku Matsuyama, Sachiko Morita, Naoki Ehara, Nobuhiro Miyamae, Takaaki Jo, Yorihisa Sumida, Nobunaga Okada, Makoto Watanabe, Masahiro Nozawa, Ayumu Tsuruoka, Yoshihiro Fujimoto, Yasuko Okumura, Tetsuhisa Kitamura, Ryoji Iiduka, Shigeru Ohtsuru
Software Mentions: 7
Published: over 5 years ago

10.3389/fgene.2021.739470

Construction on of a Ferroptosis-Related lncRNA-Based Model to Improve the Prognostic Evaluation of Gastric Cancer Patients Based on Bioinformatics
Cited by: 19
Author(s): Jing Pan, Xinyue Zhang, Xuedong Fang, Zhuoyuan Xin
Software Mentions: 7
Published: almost 5 years ago

10.3389/fped.2021.711104

Early Prediction of Multiple Organ Dysfunction in the Pediatric Intensive Care Unit
Cited by: 10
Author(s): Sanjukta N. Bose, Joseph L. Greenstein, James C. Fackler, Sridevi V. Sarma, Raimond L. Winslow, Melania M. Bembea
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-020-75473-z

Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
Cited by: 16
Author(s): Satoru Kawakita, Jennifer L. Beaumont, Vadim Jucaud, Matthew J Everly
Software Mentions: 7
Published: almost 6 years ago

10.3389/fcell.2021.682261

Immunity-Related Gene Signature Identifies Subtypes Benefitting From Adjuvant Chemotherapy or Potentially Responding to PD1/PD-L1 Blockage in Pancreatic Cancer
Cited by: 3
Author(s): Qian Hao, Hongzhe Li, Junjie Xie, Xiang Lü, Fanlu Li, Weishen Wang, Xiaomei Tang, Minmin Shi, Longyang Jiang, Hongwei Li, Hao Chen, Chenghong Peng, Zhiwei Xu, Xiaxing Deng, Baiyong Shen
Software Mentions: 7
Published: about 5 years ago

10.3389/fcell.2021.658642

HNRNPA2B1 Affects the Prognosis of Esophageal Cancer by Regulating the miR-17-92 Cluster
Cited by: 21
Author(s): Kexin Li, Jiongyu Chen, Xiaoying Lou, Yiling Li, Benheng Qian, Danfei Xu, Yue Wu, Shaohui Ma, Donghong Zhang, Wei Cui
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2019.00185

Myometrial Transcriptional Signatures of Human Parturition
Cited by: 36
Author(s): Zachary Stanfield, Pei F. Lai, Kaiyu Lei, Mark R. Johnson, Andrew M. Blanks, Roberto Romero, Mark R. Chance, Sam Mesiano, Mehmet Koyutürk
Software Mentions: 7
Published: over 7 years ago

10.3389/fcell.2021.726716

Identification of an Immune-Related Long Noncoding RNA Pairs Model to Predict Survival and Immune Features in Gastric Cancer
Cited by: 8
Author(s): Shenglei Song, Shuhao Liu, Zhewei Wei, Xinghan Jin, Deli Mao, Yulong He, Bo Li, Changhua Zhang
Software Mentions: 7
Published: almost 5 years ago

10.3389/fcell.2021.622198

Succinylation Regulators Promote Clear Cell Renal Cell Carcinoma by Immune Regulation and RNA N6-Methyladenosine Methylation
Cited by: 11
Author(s): Wenqing Lü, Xiaofang Che, Xiujuan Qu, Chunlei Zheng, Xianghong Yang, Bowen Bao, Zhi Li, Duo Wang, Yue Jin, Yizhe Wang, Jiawen Xiao, Jianfei Qi, Yunpeng Liu
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-75573-w

Development of a novel immune-related genes prognostic signature for osteosarcoma
Cited by: 17
Author(s): Zhi-Xi Wu, Yajun Deng, Guangzhi Zhang, Enhui Ren, Wenhua Yuan, Qiqi Xie
Software Mentions: 7
Published: almost 6 years ago

10.3389/fendo.2021.712513

Construction of a Prognostic Risk Prediction Model for Obesity Combined With Breast Cancer
Cited by: 1
Author(s): Na Sun, Dandan Ma, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Fei Han, Yi Zhang, Xiaowei Qi
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pcbi.1008720

Impact of between-tissue differences on pan-cancer predictions of drug sensitivity
Cited by: 4
Author(s): John P. Lloyd, Matthew B. Soellner, Sofía D. Merajver, Jun Z. Li
Software Mentions: 7
Published: over 5 years ago

10.1186/s12874-019-0681-4

Machine learning in medicine: a practical introduction
Cited by: 526
Author(s): Jenni A. M. Sidey-Gibbons, Chris Sidey‐Gibbons
Software Mentions: 7
Published: over 7 years ago

10.3389/fcell.2021.673827

Expression of Lipid-Metabolism Genes Is Correlated With Immune Microenvironment and Predicts Prognosis in Osteosarcoma
Cited by: 33
Author(s): Qian-Nan Hu, Ting Lei, Yihe Hu, Pengfei Lei
Software Mentions: 7
Published: over 5 years ago

10.1186/s12935-020-01216-9

Integrated nomogram based on five stage-related genes and TNM stage to predict 1-year recurrence in hepatocellular carcinoma
Cited by: 14
Author(s): Haohan Liu, Yongcong Yan, Ruibing Chen, Mengdi Zhu, Jianhong Lin, Chuanchao He, Bingchao Shi, Ke Wen, Kai Mao, Zhiyu Xiao
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-63186-2

Socially engaged calves are more likely to be colonised by VTEC O157:H7 than individuals showing signs of poor welfare
Cited by: 4
Author(s): Lena-Mari Tamminen, C. Reed Hranac, Johan Dicksved, Erik Eriksson, Ulf Emanuelson, Linda J. Keeling
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-021-97678-6

Neutrophil-to-lymphocyte ratio and monocyte-to-lymphocyte ratio predict length of hospital stay in myocarditis
Cited by: 16
Author(s): Moritz Mirna, Lukas Schmutzler, Albert Topf, Uta C. Hoppe, Michael Lichtenauer
Software Mentions: 7
Published: almost 5 years ago

10.3389/fgene.2019.00774

A Hybrid Ensemble Approach for Identifying Robust Differentially Methylated Loci in Pan-Cancers
Cited by: 3
Author(s): Qi Tian, Jianxiao Zou, Yuan Fang, Zhongli Yu, Jie Tang, Ying Song, Shicai Fan
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-019-53843-6

Monocytes affect bone mineral density in pre- and postmenopausal women through ribonucleoprotein complex biogenesis by integrative bioinformatics analysis
Cited by: 8
Author(s): Kang-Wen Xiao, Jiali Li, Zhao-Yi Zeng, Zhibo Liu, Zhiqiang Hou, Xin Yan, Lin Cai
Software Mentions: 7
Published: over 6 years ago

10.3389/fgene.2021.710485

Evaluations of Genomic Prediction and Identification of New Loci for Resistance to Stripe Rust Disease in Wheat (Triticum aestivum L.)
Cited by: 7
Author(s): Vipin Tomar, G. S. Dhillon, Daljit Singh, Ravi P. Singh, Jesse Poland, Anis Ahmad Chaudhary, Pradeep Kumar Bhati, Arun Kumar Joshi, Uttam Kumar
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-019-50260-7

Plasma metabolites associated with homeostatic model assessment of insulin resistance: metabolite-model design and external validation
Cited by: 5
Author(s): Pablo Hernández‐Alonso, Jesús García‐Gavilán, Lucía Camacho-Barcia, Anders Sjödin, Thorsten Hansen, Jo Harrold, Jordi Salas‐Salvadó, Jason C.G. Halford, Sı́lvia Canudas, Mònica Bulló
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41416-019-0694-0

Development of PancRISK, a urine biomarker-based risk score for stratified screening of pancreatic cancer patients
Cited by: 29
Author(s): Oleg Blyuss, Alexey Zaikin, Valeriia Cherepanova, Daniel Munblit, Elena M. Kiseleva, O. M. Prytomanova, Stephen W. Duffy, Tatjana Crnogorac‐Jurčević
Software Mentions: 7
Published: over 6 years ago

10.1042/BSR20203496

Screening of immunosuppressive cells from colorectal adenocarcinoma and identification of prognostic markers
Cited by: 5
Author(s): Fazhan Li, Jun Zhou, Zedong Li, Leiyi Zhang
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-45989-0

Machine learning approaches to predict lupus disease activity from gene expression data
Cited by: 48
Author(s): Brian Kegerreis, Michelle D. Catalina, Prathyusha Bachali, Nicholas S. Geraci, Adam C. Labonte, Chen Zeng, Nathaniel Stearrett, Keith A. Crandall, Peter E. Lipsky, Amrie C. Grammer
Software Mentions: 7
Published: about 7 years ago

10.1042/BSR20200492

Profiles of overall survival-related gene expression-based risk signature and their prognostic implications in clear cell renal cell carcinoma
Cited by: 3
Author(s): Zihao He, Tuo Deng, Xiaolu Duan, Guohua Zeng
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-018-23584-z

Antidepressant drug-specific prediction of depression treatment outcomes from genetic and clinical variables
Cited by: 48
Author(s): Raquel Iniesta, Karen Hodgson, Daniel Ståhl, Karim Malki, Wolfgang Maier, Marcella Rietschel, Ole Mors, Joanna Hauser, Neven Henigsberg, Mojca Zvezdana Dernovšek, Daniel Souery, Richard Dobson, Katherine J. Aitchison, Anne Farmer, Peter McGuffin, Cathryn M. Lewis, Rudolf Uher
Software Mentions: 7
Published: over 8 years ago

10.3389/fgene.2021.639642

Immune-Related Genes Are Prognostic Markers for Prostate Cancer Recurrence
Cited by: 10
Author(s): Min Fu, Qiang Wang, Hanbo Wang, Ying Dai, Jin Wang, Weiting Kang, Zilian Cui, Xunbo Jin
Software Mentions: 7
Published: almost 5 years ago

10.1155/2019/4572130

Intraoperative Hepatic Blood Inflow Can Predict Early Acute Kidney Injury following DCD Liver Transplantation: A Retrospective Observational Study
Cited by: 2
Author(s): Ao Jiao, Qingpeng Liu, Feng Li, Rui Guo, Bowen Wang, Xiwen Lu, Ning Sun, Chengshuo Zhang, Xiaohang Li, Jialin Zhang
Software Mentions: 7
Published: about 7 years ago

10.3389/fphar.2021.605764

Robust Performance of Potentially Functional SNPs in Machine Learning Models for the Prediction of Atorvastatin-Induced Myalgia
Cited by: 7
Author(s): Brandon Nick Sern Ooi, Raechell, Ariel Fangting Ying, Yong Zher Koh, Jian Yu, Sherman W. L. Yee, Justin H. S. Lee, Samuel S. Chong, Jack Wei Chieh Tan, Jing Liu, Caroline Lee, Chester L. Drum
Software Mentions: 7
Published: over 5 years ago

10.1038/srep28657

Pubertal development in healthy children is mirrored by DNA methylation patterns in peripheral blood
Cited by: 57
Author(s): Kristian Almstrup, Marie Johansen, Alexander Busch, Casper P Hagen, John Nielsen, Jørgen Holm Petersen, Anders Juul
Software Mentions: 7
Published: about 10 years ago

10.18632/aging.202278

Identification of long non-coding RNA signatures for squamous cell carcinomas and adenocarcinomas
Cited by: 0
Author(s): Suyan Tian, Mingbo Tang, Jialin Li, Chi Wang, Wei Liu
Software Mentions: 7
Published: over 5 years ago

10.1289/EHP333

DNA Methylation Score as a Biomarker in Newborns for Sustained Maternal Smoking during Pregnancy
Cited by: 84
Author(s): Sarah E. Reese, Shanshan Zhao, Michael C. Wu, Bonnie R. Joubert, Christine Louise Parr, Siri Eldevik Håberg, Per Magne Ueland, Roy Miodini Nilsen, Øivind Midttun, Stein Emil Vollset, Shyamal D. Peddada, Wenche Nystad, Stephanie J. London
Software Mentions: 7
Published: over 9 years ago

10.1038/sdata.2018.21

Small RNA-seq analysis of circulating miRNAs to identify phenotypic variability in Friedreich’s ataxia patients
Cited by: 22
Author(s): Marta Seco-Cervera, Daymé González-Rodríguez, José Santiago Ibáñez-Cabellos, Lorena Peiró-Chova, Federico V. Pallardó, José Luis García-Giménez
Software Mentions: 7
Published: over 8 years ago

10.1186/s12885-021-08565-2

Predictive potential of Nomogram based on GMWG for patients with hepatocellular carcinoma after radical resection
Cited by: 2
Author(s): Liying Ren, Dongbo Chen, Wentao Xu, Tingfeng Xu, Rongyu Wei, Liya Suo, Yingze Huang, Hongsong Chen, Weijia Liao
Software Mentions: 7
Published: about 5 years ago

10.1038/s41597-019-0207-2

Compendiums of cancer transcriptomes for machine learning applications
Cited by: 13
Author(s): Su Bin Lim, Swee Jin Tan, Wan-Teck Lim, Chwee Teck Lim
Software Mentions: 7
Published: almost 7 years ago

10.1002/bimj.201500234

Identification of biomarker-by-treatment interactions in randomized clinical trials with survival outcomes and high-dimensional spaces
Cited by: 24
Author(s): Nils Ternès, Federico Rotolo, Georg Heinze, Stefan Michiels
Software Mentions: 7
Published: over 9 years ago

10.3389/fnagi.2021.605970

Immune Profiling of Parkinson’s Disease Revealed Its Association With a Subset of Infiltrating Cells and Signature Genes
Cited by: 12
Author(s): Xi Zhang, Zhihua Shao, Sutong Xu, Qiulu Liu, Chenming Liu, Yuan Luo, Lingjing Jin, Siguang Li
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2021.733595

Identification of Glycolysis-Related lncRNAs and the Novel lncRNA WAC-AS1 Promotes Glycolysis and Tumor Progression in Hepatocellular Carcinoma
Cited by: 22
Author(s): Xigang Xia, Hao Zhang, Peng Xia, Yu Zhu, Jie Liu, Kequan Xu, Yufeng Yuan
Software Mentions: 7
Published: almost 5 years ago

10.1186/1752-0509-8-47

Fast Bayesian inference for gene regulatory networks using ScanBMA
Cited by: 78
Author(s): William Chad Young, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 6
Published: over 12 years ago

10.1371/journal.ppat.1009916

Quantifying transmission dynamics of acute hepatitis C virus infections in a heterogeneous population using sequence data
Cited by: 6
Author(s): Gonché Danesh, Victor Virlogeux, Christophe Ramière, Caroline Charre, Laurent Cotte, Samuel Alizon
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12893-020-00726-7

A novel nomogram to predict the risk of anastomotic leakage in patients after oesophagectomy
Cited by: 10
Author(s): Chengjie Huang, Haijun Yao, Qi Huang, Huijie Lu, Mengdan Xu
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2020.572708

Hematopoietic Gene Expression Regulation Through m6A Methylation Predicts Prognosis in Stage III Colorectal Cancer
Cited by: 1
Author(s): Zheng Zhou, Shaobo Mo, Ruiqi Gu, Weixing Dai, Xinhui Zou, Lingyu Han, Long Zhang, Renjie Wang, Guoxiang Cai
Software Mentions: 6
Published: almost 6 years ago

10.12688/f1000research.17149.2

Hub genes in a pan-cancer co-expression network show potential for predicting drug responses
Cited by: 0
Author(s): Francisco Azuaje, Tony Kaoma, Céline Jeanty, Petr V. Nazarov, Arnaud Muller, Sang Yoon Kim, Gunnar Dittmar, Anna Golebiewska, Simone P. Niclou
Software Mentions: 6
Published: over 7 years ago

10.1186/s13104-017-2540-x

The effect of mislabeled phenotypic status on the identification of mutation-carriers from SNP genotypes in dairy cattle
Cited by: 6
Author(s): Stefano Biffani, Hubert Pausch, Hermann Schwarzenbacher, Filippo Biscarini
Software Mentions: 6
Published: about 9 years ago

10.18632/aging.103743

Identification of subtype-specific genes signature by WGCNA for prognostic prediction in diffuse type gastric cancer
Cited by: 6
Author(s): Qi Zhou, Liqun Zhou, Shihao Li, Yi‐Wu Yuan, Li Liu, Jinliang Wang, Deng-Zhong Wu, You Wu, Lin Xin
Software Mentions: 6
Published: almost 6 years ago

10.1155/2021/9943465

Construction and Validation of an Autophagy-Related Prognostic Model for Osteosarcoma Patients
Cited by: 2
Author(s): Qian-Nan Hu, Ting Lei, Pengfei Lei, Yihe Hu
Software Mentions: 6
Published: about 5 years ago

10.1186/s12859-021-04189-2

A novel miRNA-based classification model of risks and stages for clear cell renal cell carcinoma patients
Cited by: 11
Author(s): Eskezeia Y. Dessie, Jeffrey J. P. Tsai, Jan‐Gowth Chang, Ka-Lok Ng
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-021-04264-8

mLoc-mRNA: predicting multiple sub-cellular localization of mRNAs using random forest algorithm coupled with feature selection via elastic net
Cited by: 6
Author(s): Prabina Kumar Meher, Anil Rai, Atmakuri Ramakrishna Rao
Software Mentions: 6
Published: about 5 years ago

10.3389/fgene.2021.667358

Improving Genomic Prediction Using High-Dimensional Secondary Phenotypes
Cited by: 3
Author(s): Bader Arouisse, Tom P.J.M. Theeuwen, F.A. van Eeuwijk, Willem Kruijer
Software Mentions: 6
Published: about 5 years ago

10.3390/ijms22031189

Comparison of Proteomic Technologies for Blood-Based Detection of Colorectal Cancer
Cited by: 7
Author(s): Megha Bhardwaj, Tobias Terzer, Petra Schrotz‐King, Hermann Brenner
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.102817

Identification of prognostic immune-related genes in the tumor microenvironment of endometrial cancer
Cited by: 61
Author(s): Peigen Chen, Yongtao Yang, Yu Zhang, Senwei Jiang, Xiaomao Li, Jing Wan
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0204819

Sensor-based measurement of critical care nursing workload: Unobtrusive measures of nursing activity complement traditional task and patient level indicators of workload to predict perceived exertion
Cited by: 20
Author(s): Michael A. Rosen, Aimee Dietz, Nam Lee, I-Jeng Wang, J. Markowitz, Rhonda Wyskiel, Ting Yang, Carey E. Priebe, Adam Sapirstein, Ayşe P. Gürses, Peter J. Pronovost
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0217536

Challenges and caveats of a multi-center retrospective radiomics study: an example of early treatment response assessment for NSCLC patients using FDG-PET/CT radiomics
Cited by: 30
Author(s): Janita E. van Timmeren, Sara Carvalho, Ralph T.H. Leijenaar, Esther G.C. Troost, Wouter van Elmpt, Dirk De Ruysscher, Jean-Pierre Muratet, Fabrice Denis, T. Schimek-Jasch, Ursula Nestle, Arthur Jochems, Henry C. Woodruff, Cary Oberije, Philippe Lambin
Software Mentions: 6
Published: about 7 years ago

10.7554/eLife.53618

Combined deletion of Glut1 and Glut3 impairs lung adenocarcinoma growth
Cited by: 15
Author(s): Caroline Contat, Pierre‐Benoit Ancey, Nadine Zangger, Silvia Sabatino, Justine Pascual, Stéphane Escrig, Linda Jensen, Christine Goepfert, Bernard Lanz, Mario Lepore, Rolf Gruetter, A. Rossier, Sabina Berezowska, Christina Neppl, Inti Zlobec, Stéphanie Clerc-Rosset, Graham Knott, Jeffrey C. Rathmell, E. Dale Abel, A. Meibom, Etienne Meylan
Software Mentions: 6
Published: about 6 years ago

10.3389/fonc.2020.596087

Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival
Cited by: 18
Author(s): Dai Zhang, Yi Zheng, Shuanying Yang, Yiche Li, Meng Wang, Jia Yao, Yao Deng, Na Li, Bajin Wei, Ying Wu, Yuyao Zhu, Hongtao Li, Zhijun Dai
Software Mentions: 6
Published: over 5 years ago

10.1186/s12874-019-0673-4

Comparison of methods for early-readmission prediction in a high-dimensional heterogeneous covariates and time-to-event outcome framework
Cited by: 7
Author(s): Simon Bussy, Raphaël Veil, Vincent Looten, Anita Burgun, Stéphane Gaı̈ffas, Agathe Guilloux, Brigitte Ranque, Anne‐Sophie Jannot
Software Mentions: 6
Published: over 7 years ago

10.3389/fonc.2019.01485

The Potential of Radiomics Nomogram in Non-invasively Prediction of Epidermal Growth Factor Receptor Mutation Status and Subtypes in Lung Adenocarcinoma
Cited by: 31
Author(s): Wei Zhao, Ying Wu, Yanan Xu, Yingli Sun, Pan Gao, Min Tan, Wenrui Ma, Cheng Li, Liang Jin, Yanqing Hua, Jun Liu, Ming Li
Software Mentions: 6
Published: over 6 years ago

10.7554/eLife.65776

Developing a multivariate prediction model of antibody features associated with protection of malaria-infected pregnant women from placental malaria
Cited by: 18
Author(s): Elizabeth H. Aitken, Timon Damelang, Amaya Ortega-Pajares, Agersew Alemu, Wina Hasang, Saber Dini, Holger W. Unger, Maria Ome-Kaius, Morten A. Nielsen, Ali Salanti, Joe Smith, Stephen J. Kent, P Mark Hogarth, Bruce D. Wines, Julie A. Simpson, Amy W. Chung, Stephen J. Rogerson
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0192859

18F-fluorodeoxyglucose positron-emission tomography (FDG-PET)-Radiomics of metastatic lymph nodes and primary tumor in non-small cell lung cancer (NSCLC) – A prospective externally validated study
Cited by: 54
Author(s): Sara Carvalho, Ralph T.H. Leijenaar, Esther G.C. Troost, Janita E. van Timmeren, Cary Oberije, Wouter van Elmpt, Lioe-Fee de Geus-Oei, Johan Bussink
Software Mentions: 6
Published: over 8 years ago

10.1186/1471-2288-14-116

Validation of prediction models based on lasso regression with multiply imputed data
Cited by: 91
Author(s): Jammbe Z. Musoro, Aeilko H. Zwinderman, Milo A. Puhan, Gerben ter Riet, Ronald B. Geskus
Software Mentions: 6
Published: almost 12 years ago

10.1186/1471-2105-16-S6-S1

Sparse conditional logistic regression for analyzing large-scale matched data from epidemiological studies: a simple algorithm
Cited by: 16
Author(s): Marta Avalos, Hélène Pouyes, Yves Grandvalet, Ludivine Orriols, Emmanuel Lagarde
Software Mentions: 6
Published: over 11 years ago

10.1186/s12911-021-01463-4

Assessing elderly’s functional balance and mobility via analyzing data from waist-mounted tri-axial wearable accelerometers in timed up and go tests
Cited by: 8
Author(s): Lisha Yu, Yang Zhao, Hailiang Wang, Tien‐Lung Sun, Terrence E. Murphy, Kwok‐Leung Tsui
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-018-2344-6

Priority-Lasso: a simple hierarchical approach to the prediction of clinical outcome using multi-omics data
Cited by: 32
Author(s): Simon Klau, Vindi Jurinović, Roman Hornung, Tobias Herold, Anne‐Laure Boulesteix
Software Mentions: 6
Published: almost 8 years ago

10.1186/s40246-021-00323-6

An ensemble of the iCluster method to analyze longitudinal lncRNA expression data for psoriasis patients
Cited by: 2
Author(s): Suyan Tian, Chi Wang
Software Mentions: 6
Published: over 5 years ago

10.1186/s12880-021-00581-9

Radiomic model for differentiating parotid pleomorphic adenoma from parotid adenolymphoma based on MRI images
Cited by: 11
Author(s): Lele Song, Shun-jun Chen, Wang Chen, Zhan Shi, Xiaodong Wang, Lina Song, Chen Diansen
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.203190

Immune infiltration and a ferroptosis-associated gene signature for predicting the prognosis of patients with endometrial cancer
Cited by: 32
Author(s): Wenwu Yin, Liao Fuchun, Mengjie Chen, Xiaoqing Qin, Hao Lai, Yuan Lin, Desheng Yao
Software Mentions: 6
Published: about 5 years ago

10.1016/j.tube.2019.101859

Distinct serum biosignatures are associated with different tuberculosis treatment outcomes
Cited by: 22
Author(s): Katharina Ronacher, Novel N. Chegou, Léanie Kleynhans, Joel Fleury Djoba Siawaya, Nelita du Plessis, André G. Loxton, Elizna Maasdorp, Gerard Tromp, Martin Kidd, Kim Stanley, Magdalena Kriel, Ângela Menezes, Andrea Gutschmidt, Gian D. van der Spuy, Robin M. Warren, Reynaldo Dietze, Alphonse Okwera, Bonnie Thiel, John T. Belisle, Jacqueline M. Cliff, W. Henry Boom, John L. Johnson, Paul D. van Helden, Hazel M. Dockrell, Gerhard Walzl
Software Mentions: 6
Published: almost 7 years ago

10.7150/ijbs.32899

A robust 6-mRNA signature for prognosis prediction of pancreatic ductal adenocarcinoma
Cited by: 14
Author(s): Chixing Zhou, Yue Zhao, Yuehui Yin, Zhiqiu Hu, Manar Atyah, Wanyong Chen, Zhi Qiang Meng, Huarong Mao, Qiang Zhou, Wei‐Guo Tang, Pengcheng Wang, Zhanming Li, Juyang Weng, Christiane Bruns, Marie Popp, Felix Popp, Qiongzhu Dong, Ning Ren
Software Mentions: 6
Published: over 7 years ago

10.1002/sim.6782

Review and evaluation of penalised regression methods for risk prediction in low‐dimensional data with few events
Cited by: 208
Author(s): Menelaos Pavlou, Gareth Ambler, Shaun Seaman, Maria De Iorio, Rumana Omar
Software Mentions: 6
Published: almost 11 years ago

10.1186/s12920-021-01036-4

Multi-factor regulatory network and different clusters in hypertrophic obstructive cardiomyopathy
Cited by: 3
Author(s): Xianyu Qin, Lei Huang, Sicheng Chen, Shaoxian Chen, Pengju Wen, Yueheng Wu, Jian Zhuang
Software Mentions: 6
Published: about 5 years ago

10.1186/s12284-018-0223-4

Genomic selection of agronomic traits in hybrid rice using an NCII population
Cited by: 59
Author(s): Yongsheng Xu, Xin Wang, Xiaowen Ding, Xianwei Zheng, Zefeng Yang, Chenwu Xu, Zhongli Hu
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0153355

Immune Profiles to Predict Response to Desensitization Therapy in Highly HLA-Sensitized Kidney Transplant Candidates
Cited by: 20
Author(s): Julie M. Yabu, Janet Siebert, Holden T. Maecker
Software Mentions: 6
Published: over 10 years ago

10.1186/s12874-015-0066-2

Comparison of subset selection methods in linear regression in the context of health-related quality of life and substance abuse in Russia
Cited by: 53
Author(s): Olga Morozova, Olga S. Levina, Anneli Uusküla, Robert Heimer
Software Mentions: 6
Published: almost 11 years ago

10.3390/s19204496

Simultaneous Assessment of Urinary and Fecal Volatile Organic Compound Analysis in De Novo Pediatric IBD
Cited by: 9
Author(s): Sofia el Manouni el Hassani, Sofie Bosch, Jesse P. M. Lemmen, Marina Brizzio Brentar, Ibrahim Ayada, Alfian Wicaksono, James A. Covington, Marc A. Benninga, Nanne K. H. de Boer, Tim G. J. de Meij
Software Mentions: 6
Published: almost 7 years ago

10.3934/Neuroscience.2021016

ISOMAP and machine learning algorithms for the construction of embedded functional connectivity networks of anatomically separated brain regions from resting state fMRI data of patients with Schizophrenia
Cited by: 11
Author(s): Ioannis Gallos, Kostakis Gkiatis, George K. Matsopoulos, Constantinos Siettos
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.709133

Identification of Transcription Factor-Related Gene Signature and Risk Score Model for Colon Adenocarcinoma
Cited by: 4
Author(s): Jia Wei Lin, Zichao Cao, Du Yu, Wei Cai
Software Mentions: 6
Published: almost 5 years ago

10.1155/2021/9921466

A Novel Immune-Related lncRNA-Based Model for Survival Prediction in Clear Cell Renal Cell Carcinoma
Cited by: 9
Author(s): Zedan Zhang, Yanlin Tang, Yanjun Liu, Hongkai Zhuang, Enyu Lin, Lu Xie, Xiaoqiang Feng, Kaiwen Tian, Jiayi Zeng, Jiumin Liu, Yuming Yu
Software Mentions: 6
Published: about 5 years ago

10.3389/fcimb.2021.643968

Gut Microbiome Alterations in Patients With Thyroid Nodules
Cited by: 15
Author(s): Ang Li, Tiantian Li, Xinxin Gao, Hang Yan, Jingfeng Chen, Mingjie Huang, Lin Wang, Dengke Yin, Hongqiang Li, Runsheng Ma, Qiang Zeng, Shuzhe Ding
Software Mentions: 6
Published: over 5 years ago

10.1186/s12879-018-3285-4

Using Baidu index to nowcast hand-foot-mouth disease in China: a meta learning approach
Cited by: 21
Author(s): Yang Zhao, Qinneng Xu, Yupeng Chen, Kwok Leung Tsui
Software Mentions: 6
Published: about 8 years ago

10.1186/s12879-017-2351-7

1H-NMR analysis of feces: new possibilities in the helminthes infections research
Cited by: 19
Author(s): Sarantos Kostidis, Daria Kokova, Natalia Dementeva, Irina V. Saltykova, Hye Kyong Kim, Young Hae Choi, Oleg A. Mayboroda
Software Mentions: 6
Published: over 9 years ago

10.1038/s41598-021-88440-z

Machine-learning based prediction of Cushing’s syndrome in dogs attending UK primary-care veterinary practice
Cited by: 7
Author(s): Imogen Schofield, David Brodbelt, Noel Kennedy, Stijn Niessen, David Church, Rebecca Geddes, Dan G. O’Neill
Software Mentions: 6
Published: over 5 years ago

10.3389/fcell.2021.681431

Comprehensive Transcriptomic Analysis Reveals Prognostic Value of an EMT-Related Gene Signature in Colorectal Cancer
Cited by: 5
Author(s): Shaobo Mo, Weixing Dai, Zheng Zhou, Ruiqi Gu, Yaqi Li, Wenqiang Xiang, Lingyu Han, Long Zhang, Renjie Wang, Guoxiang Cai, Sanjun Cai, Lu Gan, Qingguo Li
Software Mentions: 6
Published: about 5 years ago

10.1136/jitc-2020-001942

Cell-free DNA copy number variations predict efficacy of immune checkpoint inhibitor-based therapy in hepatobiliary cancers
Cited by: 17
Author(s): Yang Xu, Ying Hu, Keyan Yang, Dongxu Wang, Jianzhen Lin, Junyu Long, Fucun Xie, Jianshan Mao, Jin Bian, Mei Guan, Jie Pan, Li Huo, Ke Hu, Xiaobo Yang, Yilei Mao, Xinting Sang, Jiao Zhang, Xi Wang, Henghui Zhang, Haitao Zhao
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-87982-6

Association among extracellular superoxide dismutase genotype, plasma concentration, and comorbidity in the very old and centenarians
Cited by: 7
Author(s): Takashi Sasaki, Yukiko Abe, M. Takayama, Tetsuo Adachi, Hideyuki Okano, Nobuyoshi Hirose, Yasumichi Arai
Software Mentions: 6
Published: over 5 years ago

10.3389/fcell.2021.641629

Dysregulation of miR-138-5p/RPS6KA1-AP2M1 Is Associated With Poor Prognosis in AML
Cited by: 10
Author(s): Donghu Yu, Chen Chen, Xiaoping Li, Jie Yao, Sheng Li, Xiaolan Ruan
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-82474-z

Assessing biophysical and socio-economic impacts of climate change on regional avian biodiversity
Cited by: 8
Author(s): Simon Kapitza, Pham Van Ha, Tom Kompas, Nick Golding, Natasha C. R. Cadenhead, Payal Bal, Brendan A. Wintle
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-83338-2

Inclusion of genetic variants in an ensemble of gradient boosting decision trees does not improve the prediction of citalopram treatment response
Cited by: 6
Author(s): Jason Shumake, Travis T. Mallard, John E. McGeary, Christopher G. Beevers
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-81728-0

The impact of tinnitus distress on cognition
Cited by: 21
Author(s): Patrick Neff, Jorge Simões, S Psatha, Nyamaa Amarjargal, Benjamin Boecking, Leonie Rausch, Juliane Dettling-Papargyris, Christine Funk, Petra Brüeggemann, Birgit Mazurek
Software Mentions: 6
Published: over 5 years ago

10.3389/fcell.2021.644220

Prognostic Signatures of Metabolic Genes and Metabolism-Related Long Non-coding RNAs Accurately Predict Overall Survival for Osteosarcoma Patients
Cited by: 8
Author(s): Chang Gong, Rong Tang, Yawei Shi, Liu Tai-cong, Kaisheng Zhou, Nan Wu, Haihong Zhang
Software Mentions: 6
Published: over 5 years ago

Projects: cran: glmnet

Science Score: 100/100

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Papers Mentioning glmnet 1,607