cran: glmnet | Projects | Ecosyste.ms: Papers

10.7150/jca.50716

Detection of Pancreatic Ductal Adenocarcinoma by A qPCR-based Normalizer-free Circulating Extracellular Vesicles RNA Signature
Cited by: 6
Author(s): Dashan Qin, Yu Zhao, Qingdong Guo, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 7
Published: almost 4 years ago

10.1038/srep28657

Pubertal development in healthy children is mirrored by DNA methylation patterns in peripheral blood
Cited by: 57
Author(s): Kristian Almstrup, Marie Johansen, Alexander Busch, Casper P Hagen, John Nielsen, Jørgen Holm Petersen, Anders Juul
Software Mentions: 7
Published: over 8 years ago

10.7717/peerj.11968

Development and validation of a novel survival model for acute myeloid leukemia based on autophagy-related genes
Cited by: 7
Author(s): Li Huang, Lier Lin, Xing Fu, Can Meng
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2019.00185

Myometrial Transcriptional Signatures of Human Parturition
Cited by: 36
Author(s): Zachary Stanfield, Pei F. Lai, Kaiyu Lei, Mark R. Johnson, Andrew M. Blanks, Roberto Romero, Mark R. Chance, Sam Mesiano, Mehmet Koyutürk
Software Mentions: 7
Published: over 5 years ago

10.1002/jcsm.12556

An epigenetic clock for human skeletal muscle
Cited by: 58
Author(s): Sarah Voisin, Nicholas R. Harvey, Larisa M. Haupt, Lyn R. Griffiths, Kevin J. Ashton, Vernon G. Coffey, Thomas Doering, Jamie-Lee M Thompson, Christian Benedict, Jonathan Cedernaes, Maléne E. Lindholm, Jeffrey M. Craig, David S. Rowlands, Adam P. Sharples, Steve Horvath, Nir Eynon
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41416-019-0694-0

Development of PancRISK, a urine biomarker-based risk score for stratified screening of pancreatic cancer patients
Cited by: 29
Author(s): Oleg Blyuss, Alexey Zaikin, Valeriia Cherepanova, Daniel Munblit, Elena M. Kiseleva, O. M. Prytomanova, Stephen W. Duffy, Tatjana Crnogorac‐Jurčević
Software Mentions: 7
Published: almost 5 years ago

10.3389/fgene.2021.739470

Construction on of a Ferroptosis-Related lncRNA-Based Model to Improve the Prognostic Evaluation of Gastric Cancer Patients Based on Bioinformatics
Cited by: 19
Author(s): Jing Pan, Xinyue Zhang, Xuedong Fang, Zhuoyuan Xin
Software Mentions: 7
Published: about 3 years ago

10.3389/fgene.2019.00774

A Hybrid Ensemble Approach for Identifying Robust Differentially Methylated Loci in Pan-Cancers
Cited by: 3
Author(s): Qi Tian, Jianxiao Zou, Yuan Fang, Zhongli Yu, Jie Tang, Ying Song, Shicai Fan
Software Mentions: 7
Published: about 5 years ago

10.1001/jamanetworkopen.2021.21129

Assessment of the Diagnostic Efficiency of a Liquid Biopsy Assay for Early Detection of Gastric Cancer
Cited by: 15
Author(s): Daisuke Izumi, Zhenzhen Zhu, Yuetong Chen, Shusuke Toden, Xinying Huo, Mitsuro Kanda, Takatsugu Ishimoto, Dongying Gu, Miaomiao Tan, Yasuhiro Kodera, Hideo Baba, Wei Li, Jinfei Chen, Xin Wang, Ajay Goel
Software Mentions: 7
Published: about 3 years ago

10.1038/s42003-020-01416-z

Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota
Cited by: 37
Author(s): Sachiko Ishida, Koichi Kato, Masami Tanaka, Toshitaka Odamaki, Rieko Kubo, Eri Mitsuyama, Jin‐zhong Xiao, Rui Yamaguchi, Satoshi Uematsu, Seiya Imoto, Satoru Miyano
Software Mentions: 7
Published: about 4 years ago

10.3389/fgene.2021.710485

Evaluations of Genomic Prediction and Identification of New Loci for Resistance to Stripe Rust Disease in Wheat (Triticum aestivum L.)
Cited by: 7
Author(s): Vipin Tomar, G. S. Dhillon, Daljit Singh, Ravi P. Singh, Jesse Poland, Anis Ahmad Chaudhary, Pradeep Kumar Bhati, Arun Kumar Joshi, Uttam Kumar
Software Mentions: 7
Published: about 3 years ago

10.7150/jca.43805

Survival Risk Prediction Models of Gliomas Based on IDH and 1p/19q
Cited by: 4
Author(s): Han Zou, L. Chang, Siyi Wanggou, Xuejun Li
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pcbi.1008720

Impact of between-tissue differences on pan-cancer predictions of drug sensitivity
Cited by: 4
Author(s): John P. Lloyd, Matthew B. Soellner, Sofía D. Merajver, Jun Z. Li
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2019.00579

A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction
Cited by: 107
Author(s): Yi‐Hui Zhou, Paul J. Gallins
Software Mentions: 7
Published: over 5 years ago

10.1042/BSR20203496

Screening of immunosuppressive cells from colorectal adenocarcinoma and identification of prognostic markers
Cited by: 5
Author(s): Fazhan Li, Jun Zhou, Zedong Li, Leiyi Zhang
Software Mentions: 7
Published: over 3 years ago

10.1186/s13148-021-01129-y

Differential DNA methylation and changing cell-type proportions as fibrotic stage progresses in NAFLD
Cited by: 22
Author(s): Nicholas Johnson, Xiumei Wu, Christopher D. Still, Xin Chu, Anthony Petrick, Glenn S. Gerhard, Karen N. Conneely, Johanna K. DiStefano
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2019.00662

Cascaded Wx: A Novel Prognosis-Related Feature Selection Framework in Human Lung Adenocarcinoma Transcriptomes
Cited by: 6
Author(s): Bonggun Shin, Sung Soo Park, Ji Hyung Hong, Ho Jung An, Sang Hoon Chun, Kilsoo Kang, Young Ho Ahn, Yoon Ho Ko, Keunsoo Kang
Software Mentions: 7
Published: over 5 years ago

10.1136/gutjnl-2019-318343

A blood-based prognostic biomarker in IBD
Cited by: 125
Author(s): Daniele Biasci, James C. Lee, Nurulamin M Noor, Diana R Pombal, Monica Hou, Nina Lewis, Tariq Ahmad, Ailsa Hart, Miles Parkes, Eoín McKinney, Paul Lyons, Kenneth G. C. Smith
Software Mentions: 7
Published: over 5 years ago

10.1042/BSR20200492

Profiles of overall survival-related gene expression-based risk signature and their prognostic implications in clear cell renal cell carcinoma
Cited by: 3
Author(s): Zihao He, Tuo Deng, Xiaolu Duan, Guohua Zeng
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0137222

Discovery of Intermediary Genes between Pathways Using Sparse Regression
Cited by: 1
Author(s): Kuo-ching Liang, Ashwini Patil, Kenta Nakai
Software Mentions: 7
Published: about 9 years ago

10.3389/fendo.2021.712513

Construction of a Prognostic Risk Prediction Model for Obesity Combined With Breast Cancer
Cited by: 1
Author(s): Na Sun, Dandan Ma, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Fei Han, Yi Zhang, Xiaowei Qi
Software Mentions: 7
Published: about 3 years ago

10.3390/cells10092430

Artificial Intelligence-Assisted Identification of Genetic Factors Predisposing High-Risk Individuals to Asymptomatic Heart Failure
Cited by: 7
Author(s): Ning Yang, Chi-Hsiao Yeh, Tsung Hsien Tsai, Yi Ju Chou, Paul Wei Che Hsu, Chun-Hsien Li, Yun Hsuan Chan, Ling Kuo, Chun Tai Mao, Yu-Chiau Shyu, Ming‐Jui Hung, Chao‐Lun Lai, Huey Kang Sytwu, Ting Fen Tsai
Software Mentions: 7
Published: about 3 years ago

10.1155/2019/4572130

Intraoperative Hepatic Blood Inflow Can Predict Early Acute Kidney Injury following DCD Liver Transplantation: A Retrospective Observational Study
Cited by: 2
Author(s): Ao Jiao, Qingpeng Liu, Feng Li, Rui Guo, Bowen Wang, Xiwen Lu, Ning Sun, Chengshuo Zhang, Xiaohang Li, Jialin Zhang
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.603717

Enhanced Angiogenesis in Salivary Duct Carcinoma Ex-Pleomorphic Adenoma
Cited by: 6
Author(s): Takayoshi Suzuki, Satoshi Kano, Masanobu Suzuki, Shinichiro Yasukawa, Takatsugu Mizumachi, Nobuko Tsushima, Kanako C. Hatanaka, Yutaka Hatanaka, Yoshihiro Matsuno, Akihiro Homma
Software Mentions: 7
Published: over 3 years ago

10.1038/s41419-021-04015-w

Autophagy-related circRNA evaluation reveals hsa_circ_0001747 as a potential favorable prognostic factor for biochemical recurrence in patients with prostate cancer
Cited by: 16
Author(s): Chuanfan Zhong, Kuan-Hung Wu, Shuo Wang, Zining Long, Taowei Yang, Weibo Zhong, Xiao Tan, Zixian Wang, Chuanyin Li, Jianming Lü, Xiangming Mao
Software Mentions: 7
Published: over 3 years ago

10.3389/fcell.2021.618313

Long Non-coding RNA Expression Patterns in Stomach Adenocarcinoma Serve as an Indicator of Tumor Mutation Burden and Are Associated With Tumor-Infiltrating Lymphocytes and Microsatellite Instability
Cited by: 6
Author(s): Dongdong Yang, Jianan Yu, Bing Han, Yue Sun, Steven Mo, Jing Hu
Software Mentions: 7
Published: almost 4 years ago

10.3390/cancers13081934

Cannabinoid Receptor Type-2 in B Cells Is Associated with Tumor Immunity in Melanoma
Cited by: 3
Author(s): Thomas Gruber, Steve Robatel, Mirela Kremenovic, Lukas Bäriswyl, Jürg Gertsch, Mirjam Schenk
Software Mentions: 7
Published: over 3 years ago

10.18632/aging.202278

Identification of long non-coding RNA signatures for squamous cell carcinomas and adenocarcinomas
Cited by: 0
Author(s): Suyan Tian, Mingbo Tang, Jialin Li, Chi Wang, Wei Liu
Software Mentions: 7
Published: almost 4 years ago

10.3389/fcell.2021.658642

HNRNPA2B1 Affects the Prognosis of Esophageal Cancer by Regulating the miR-17-92 Cluster
Cited by: 21
Author(s): Kexin Li, Jiongyu Chen, Xiaoying Lou, Yiling Li, Benheng Qian, Danfei Xu, Yue Wu, Shaohui Ma, Donghong Zhang, Wei Cui
Software Mentions: 7
Published: over 3 years ago

10.1186/s12885-021-08565-2

Predictive potential of Nomogram based on GMWG for patients with hepatocellular carcinoma after radical resection
Cited by: 2
Author(s): Liying Ren, Dongbo Chen, Wentao Xu, Tingfeng Xu, Rongyu Wei, Liya Suo, Yingze Huang, Hongsong Chen, Weijia Liao
Software Mentions: 7
Published: over 3 years ago

10.3389/fcell.2021.682261

Immunity-Related Gene Signature Identifies Subtypes Benefitting From Adjuvant Chemotherapy or Potentially Responding to PD1/PD-L1 Blockage in Pancreatic Cancer
Cited by: 3
Author(s): Qian Hao, Hongzhe Li, Junjie Xie, Xiang Lü, Fanlu Li, Weishen Wang, Xiaomei Tang, Minmin Shi, Longyang Jiang, Hongwei Li, Hao Chen, Chenghong Peng, Zhiwei Xu, Xiaxing Deng, Baiyong Shen
Software Mentions: 7
Published: over 3 years ago

10.1002/bimj.201500234

Identification of biomarker-by-treatment interactions in randomized clinical trials with survival outcomes and high-dimensional spaces
Cited by: 24
Author(s): Nils Ternès, Federico Rotolo, Georg Heinze, Stefan Michiels
Software Mentions: 7
Published: about 8 years ago

10.3390/cancers13184559

Machine Learning Incorporating Host Factors for Predicting Survival in Head and Neck Squamous Cell Carcinoma Patients
Cited by: 5
Author(s): Han Yu, Sung Jun, Mark Farrugia, Austin J. Iovoli, Kimberly Wooten, Vishal Gupta, Ryan McSpadden, Moni Abraham Kuriakose, Michael R. Markiewicz, Justin Chan, Wesley L. Hicks, Mary E. Platek, Anurag Singh
Software Mentions: 7
Published: about 3 years ago

10.3389/fcell.2021.622198

Succinylation Regulators Promote Clear Cell Renal Cell Carcinoma by Immune Regulation and RNA N6-Methyladenosine Methylation
Cited by: 11
Author(s): Wenqing Lü, Xiaofang Che, Xiujuan Qu, Chunlei Zheng, Xianghong Yang, Bowen Bao, Zhi Li, Duo Wang, Yue Jin, Yizhe Wang, Jiawen Xiao, Jianfei Qi, Yunpeng Liu
Software Mentions: 7
Published: almost 4 years ago

10.1093/gigascience/giaa162

Lilikoi V2.0: a deep learning–enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data
Cited by: 10
Author(s): Xinying Fang, Yu Liu, Zhijie Ren, Yuheng Du, Qizhao Huang, Lana X. Garmire
Software Mentions: 7
Published: almost 4 years ago

10.1186/s40560-021-00525-z

Machine learning-based prediction models for accidental hypothermia patients
Cited by: 4
Author(s): Yohei Okada, Tasuku Matsuyama, Sachiko Morita, Naoki Ehara, Nobuhiro Miyamae, Takaaki Jo, Yorihisa Sumida, Nobunaga Okada, Makoto Watanabe, Masahiro Nozawa, Ayumu Tsuruoka, Yoshihiro Fujimoto, Yasuko Okumura, Tetsuhisa Kitamura, Ryoji Iiduka, Shigeru Ohtsuru
Software Mentions: 7
Published: almost 4 years ago

10.1186/s10194-018-0863-1

The role of personality, disability and physical activity in the development of medication-overuse headache: a prospective observational study
Cited by: 15
Author(s): Louise Schlosser Mose, Susanne S. Pedersen, Birgit Debrabant, Rigmor Jensen, Bibi Gram
Software Mentions: 7
Published: over 6 years ago

10.1128/mBio.00885-17

Pathogenicity Locus, Core Genome, and Accessory Gene Contributions to <i>Clostridium difficile</i> Virulence
Cited by: 42
Author(s): Brittany B. Lewis, Rebecca A. Carter, Lilan Ling, Ingrid Leiner, Ying Taur, Mini Kamboj, Erik R. Dubberke, João B. Xavier, Eric G. Pamer
Software Mentions: 7
Published: about 7 years ago

10.3390/ijms19102903

Identification of a Prognostic Hypoxia-Associated Gene Set in IDH-Mutant Glioma
Cited by: 27
Author(s): Philip Dao Trong, Saskia Rösch, Heimo Mairbäurl, Stefan Pusch, Andreas Unterberg, Christel Herold‐Mende, Rolf Warta
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-021-97678-6

Neutrophil-to-lymphocyte ratio and monocyte-to-lymphocyte ratio predict length of hospital stay in myocarditis
Cited by: 16
Author(s): Moritz Mirna, Lukas Schmutzler, Albert Topf, Uta C. Hoppe, Michael Lichtenauer
Software Mentions: 7
Published: about 3 years ago

10.3389/fonc.2021.733595

Identification of Glycolysis-Related lncRNAs and the Novel lncRNA WAC-AS1 Promotes Glycolysis and Tumor Progression in Hepatocellular Carcinoma
Cited by: 22
Author(s): Xigang Xia, Hao Zhang, Peng Xia, Yu Zhu, Jie Liu, Kequan Xu, Yufeng Yuan
Software Mentions: 7
Published: about 3 years ago

10.3389/fphar.2021.605764

Robust Performance of Potentially Functional SNPs in Machine Learning Models for the Prediction of Atorvastatin-Induced Myalgia
Cited by: 7
Author(s): Brandon Nick Sern Ooi, Raechell, Ariel Fangting Ying, Yong Zher Koh, Jian Yu, Sherman W. L. Yee, Justin H. S. Lee, Samuel S. Chong, Jack Wei Chieh Tan, Jing Liu, Caroline Lee, Chester L. Drum
Software Mentions: 7
Published: over 3 years ago

10.3389/fonc.2021.632459

Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
Cited by: 3
Author(s): Ruiliang Wang, Zongtai Zheng, Shun Mao, Wentao Zhang, Ji Liu, Cheng Li, Shenghua Liu, Xudong Yao
Software Mentions: 7
Published: over 3 years ago

10.3389/fonc.2020.01409

Development and Validation of a Tumor Mutation Burden–Related Immune Prognostic Model for Lower-Grade Glioma
Cited by: 43
Author(s): Yin Wu, Xingjun Jiang, Jun Tan, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Xianyong Fu, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Chao Ren, Guihua Tang
Software Mentions: 7
Published: over 4 years ago

10.3389/fped.2021.711104

Early Prediction of Multiple Organ Dysfunction in the Pediatric Intensive Care Unit
Cited by: 10
Author(s): Sanjukta N. Bose, Joseph L. Greenstein, James C. Fackler, Sridevi V. Sarma, Raimond L. Winslow, Melania M. Bembea
Software Mentions: 7
Published: over 3 years ago

10.3389/fphys.2021.609770

Construction of Prognostic Risk Prediction Model of Oral Squamous Cell Carcinoma Based on Nine Survival-Associated Metabolic Genes
Cited by: 10
Author(s): Zhun Huang, Yangyang Yao, Ting‐Yu Chen, Yifan Zhao, Chao Zhang, Yu‐Ming Niu
Software Mentions: 7
Published: over 3 years ago

10.1136/jitc-2020-001519

Transcriptional analysis of multiple ovarian cancer cohorts reveals prognostic and immunomodulatory consequences of ERV expression
Cited by: 10
Author(s): Marina Natoli, John Gallon, Haonan Lu, Ala Amgheib, David J. Pinato, Francesco Mauri, Teresa Marafioti, Ayse U. Akarca, Ines Ullmo, Jacey Ip, Eric O. Aboagye, Robert E. Brown, Anastasios Karadimitris, Sadaf Ghaem‐Maghami
Software Mentions: 7
Published: almost 4 years ago

10.2196/16153

Explanatory Model of Dry Eye Disease Using Health and Nutrition Examinations: Machine Learning and Network-Based Factor Analysis From a National Survey
Cited by: 8
Author(s): Sang Min Nam, Thomas A Peterson, Atul J. Butte, Kyoung Yul Seo, Hyun Wook Han
Software Mentions: 7
Published: almost 5 years ago

10.3389/fonc.2021.660242

Identification and Validation of a Five-Gene Signature Associated With Overall Survival in Breast Cancer Patients
Cited by: 6
Author(s): Xiaolong Wang, Chen Li, Tong Chen, Wenhao Li, Hanwen Zhang, Dong Zhang, Ying Liu, Dianwen Han, Yaming Li, Zheng Li, Dan Luo, Ning Zhang, Qifeng Yang
Software Mentions: 7
Published: about 3 years ago

10.3389/fonc.2020.572708

Hematopoietic Gene Expression Regulation Through m6A Methylation Predicts Prognosis in Stage III Colorectal Cancer
Cited by: 1
Author(s): Zheng Zhou, Shaobo Mo, Ruiqi Gu, Weixing Dai, Xinhui Zou, Lingyu Han, Long Zhang, Renjie Wang, Guoxiang Cai
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-88440-z

Machine-learning based prediction of Cushing’s syndrome in dogs attending UK primary-care veterinary practice
Cited by: 7
Author(s): Imogen Schofield, David Brodbelt, Noel Kennedy, Stijn Niessen, David Church, Rebecca Geddes, Dan G. O’Neill
Software Mentions: 6
Published: over 3 years ago

10.7150/ijbs.32899

A robust 6-mRNA signature for prognosis prediction of pancreatic ductal adenocarcinoma
Cited by: 14
Author(s): Chixing Zhou, Yue Zhao, Yuehui Yin, Zhiqiu Hu, Manar Atyah, Wanyong Chen, Zhi Qiang Meng, Huarong Mao, Qiang Zhou, Wei‐Guo Tang, Pengcheng Wang, Zhanming Li, Juyang Weng, Christiane Bruns, Marie Popp, Felix Popp, Qiongzhu Dong, Ning Ren
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2020.596087

Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival
Cited by: 18
Author(s): Dai Zhang, Yi Zheng, Shuanying Yang, Yiche Li, Meng Wang, Jia Yao, Yao Deng, Na Li, Bajin Wei, Ying Wu, Yuyao Zhu, Hongtao Li, Zhijun Dai
Software Mentions: 6
Published: almost 4 years ago

10.1155/2021/9943465

Construction and Validation of an Autophagy-Related Prognostic Model for Osteosarcoma Patients
Cited by: 2
Author(s): Qian-Nan Hu, Ting Lei, Pengfei Lei, Yihe Hu
Software Mentions: 6
Published: over 3 years ago

10.1186/s40246-021-00323-6

An ensemble of the iCluster method to analyze longitudinal lncRNA expression data for psoriasis patients
Cited by: 2
Author(s): Suyan Tian, Chi Wang
Software Mentions: 6
Published: over 3 years ago

10.3390/ijms22031189

Comparison of Proteomic Technologies for Blood-Based Detection of Colorectal Cancer
Cited by: 7
Author(s): Megha Bhardwaj, Tobias Terzer, Petra Schrotz‐King, Hermann Brenner
Software Mentions: 6
Published: almost 4 years ago

10.3389/fonc.2020.580513

A Novel RNA Binding Protein-Related Prognostic Signature for Hepatocellular Carcinoma
Cited by: 25
Author(s): Yongbiao Huang, Sheng Chen, Qin Wan, Yali Wang, Long Li, Qianxia Li, Xianglin Yuan
Software Mentions: 6
Published: about 4 years ago

10.3389/fonc.2021.657002

Prognostic Value of Eight-Gene Signature in Head and Neck Squamous Carcinoma
Cited by: 20
Author(s): Baoling Liu, Qiang Su, Jianhua Ma, Cheng Chen, Limin Wang, Fengyuan Che, Xueyuan Heng
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2020.01121

Radiomics Based on CECT in Differentiating Kimura Disease From Lymph Node Metastases in Head and Neck: A Non-Invasive and Reliable Method
Cited by: 7
Author(s): Ying Zhang, Sheng-Bo Yu, Li Zhang, Lillian Kang
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2019.01485

The Potential of Radiomics Nomogram in Non-invasively Prediction of Epidermal Growth Factor Receptor Mutation Status and Subtypes in Lung Adenocarcinoma
Cited by: 31
Author(s): Wei Zhao, Ying Wu, Yanan Xu, Yingli Sun, Pan Gao, Min Tan, Wenrui Ma, Cheng Li, Liang Jin, Yanqing Hua, Jun Liu, Ming Li
Software Mentions: 6
Published: almost 5 years ago

10.1155/2021/9921466

A Novel Immune-Related lncRNA-Based Model for Survival Prediction in Clear Cell Renal Cell Carcinoma
Cited by: 9
Author(s): Zedan Zhang, Yanlin Tang, Yanjun Liu, Hongkai Zhuang, Enyu Lin, Lu Xie, Xiaoqiang Feng, Kaiwen Tian, Jiayi Zeng, Jiumin Liu, Yuming Yu
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.636479

An Immune Cell-Based Signature Associating With EMT Phenotype Predicts Postoperative Overall Survival of ESCC
Cited by: 4
Author(s): Hongliang Yu, Dayong Gu, Chao Yang, Jianhua Xu, Feng Yan, Xu He
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.642563

A Novel Five-Gene Signature for Prognosis Prediction in Hepatocellular Carcinoma
Cited by: 14
Author(s): Lisa Su, Genhao Zhang, Xiangdong Kong
Software Mentions: 6
Published: over 3 years ago

10.1016/j.tube.2019.101859

Distinct serum biosignatures are associated with different tuberculosis treatment outcomes
Cited by: 22
Author(s): Katharina Ronacher, Novel N. Chegou, Léanie Kleynhans, Joel Fleury Djoba Siawaya, Nelita du Plessis, André G. Loxton, Elizna Maasdorp, Gerard Tromp, Martin Kidd, Kim Stanley, Magdalena Kriel, Ângela Menezes, Andrea Gutschmidt, Gian D. van der Spuy, Robin M. Warren, Reynaldo Dietze, Alphonse Okwera, Bonnie Thiel, John T. Belisle, Jacqueline M. Cliff, W. Henry Boom, John L. Johnson, Paul D. van Helden, Hazel M. Dockrell, Gerhard Walzl
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-97891-3

Soft threshold partial least squares predicts the survival fraction of malignant glioma cells against different concentrations of methotrexate’s derivatives
Cited by: 0
Author(s): Tahir Mehmood, Mudassir Iqbal
Software Mentions: 6
Published: about 3 years ago

10.3389/fonc.2019.01064

Radiomic Nomogram Improves Preoperative T Category Accuracy in Locally Advanced Laryngeal Carcinoma
Cited by: 21
Author(s): Fei Wang, Bin Zhang, Xiangjun Wu, Lizhi Liu, Fang Jin, Justin Chen, Minmin Li, Zhuozhi Chen, Yueyue Li, Di Dong, Jie Tian, Shuixing Zhang
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.53618

Combined deletion of Glut1 and Glut3 impairs lung adenocarcinoma growth
Cited by: 15
Author(s): Caroline Contat, Pierre‐Benoit Ancey, Nadine Zangger, Silvia Sabatino, Justine Pascual, Stéphane Escrig, Linda Jensen, Christine Goepfert, Bernard Lanz, Mario Lepore, Rolf Gruetter, A. Rossier, Sabina Berezowska, Christina Neppl, Inti Zlobec, Stéphanie Clerc-Rosset, Graham Knott, Jeffrey C. Rathmell, E. Dale Abel, A. Meibom, Etienne Meylan
Software Mentions: 6
Published: over 4 years ago

10.1002/sim.6782

Review and evaluation of penalised regression methods for risk prediction in low‐dimensional data with few events
Cited by: 208
Author(s): Menelaos Pavlou, Gareth Ambler, Shaun Seaman, Maria De Iorio, Rumana Omar
Software Mentions: 6
Published: about 9 years ago

10.3389/fonc.2021.725181

Identification of N6-Methylandenosine-Related lncRNAs for Subtype Identification and Risk Stratification in Gastric Adenocarcinoma
Cited by: 9
Author(s): Yuancheng Huang, Zehong Yang, Chao-Yuan Huang, Xiaotao Jiang, Yanhua Yan, Kunhai Zhuang, Yi Wen, Fengbin Liu, Peiwu Li
Software Mentions: 6
Published: about 3 years ago

10.1136/jitc-2020-001942

Cell-free DNA copy number variations predict efficacy of immune checkpoint inhibitor-based therapy in hepatobiliary cancers
Cited by: 17
Author(s): Yang Xu, Ying Hu, Keyan Yang, Dongxu Wang, Jianzhen Lin, Junyu Long, Fucun Xie, Jianshan Mao, Jin Bian, Mei Guan, Jie Pan, Li Huo, Ke Hu, Xiaobo Yang, Yilei Mao, Xinting Sang, Jiao Zhang, Xi Wang, Henghui Zhang, Haitao Zhao
Software Mentions: 6
Published: over 3 years ago

10.3390/s19204496

Simultaneous Assessment of Urinary and Fecal Volatile Organic Compound Analysis in De Novo Pediatric IBD
Cited by: 9
Author(s): Sofia el Manouni el Hassani, Sofie Bosch, Jesse P. M. Lemmen, Marina Brizzio Brentar, Ibrahim Ayada, Alfian Wicaksono, James A. Covington, Marc A. Benninga, Nanne K. H. de Boer, Tim G. J. de Meij
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.65776

Developing a multivariate prediction model of antibody features associated with protection of malaria-infected pregnant women from placental malaria
Cited by: 18
Author(s): Elizabeth H. Aitken, Timon Damelang, Amaya Ortega-Pajares, Agersew Alemu, Wina Hasang, Saber Dini, Holger W. Unger, Maria Ome-Kaius, Morten A. Nielsen, Ali Salanti, Joe Smith, Stephen J. Kent, P Mark Hogarth, Bruce D. Wines, Julie A. Simpson, Amy W. Chung, Stephen J. Rogerson
Software Mentions: 6
Published: over 3 years ago

10.1186/1752-0509-8-47

Fast Bayesian inference for gene regulatory networks using ScanBMA
Cited by: 78
Author(s): William Chad Young, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 6
Published: over 10 years ago

10.1186/s12893-020-00726-7

A novel nomogram to predict the risk of anastomotic leakage in patients after oesophagectomy
Cited by: 10
Author(s): Chengjie Huang, Haijun Yao, Qi Huang, Huijie Lu, Mengdan Xu
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2020.01496

Development and Validation of a Clinical Prognostic Model Based on Immune-Related Genes Expressed in Clear Cell Renal Cell Carcinoma
Cited by: 11
Author(s): Shengxiang Ren, Wei Wang, Hanyu Shen, Chenlin Zhang, Haiyan Hao, Mengjing Sun, Yingjing Wang, Xiaojing Zhang, Bing Lu, Chen Chen, Ziheng Wang
Software Mentions: 6
Published: about 4 years ago

10.1186/s13104-017-2540-x

The effect of mislabeled phenotypic status on the identification of mutation-carriers from SNP genotypes in dairy cattle
Cited by: 6
Author(s): Stefano Biffani, Hubert Pausch, Hermann Schwarzenbacher, Filippo Biscarini
Software Mentions: 6
Published: over 7 years ago

10.3390/nu13020549

Circulating Metabolites Associated with Postprandial Satiety in Overweight/Obese Participants: The SATIN Study
Cited by: 5
Author(s): Lucia Camacho-Barcía, Jesús García‐Gavilán, Christopher Papandreou, Thorsten Hansen, Jo Harrold, Graham Finlayson, John Blundell, Anders Sjödin, Jason C.G. Halford, Mònica Bulló
Software Mentions: 6
Published: almost 4 years ago

10.18632/aging.103743

Identification of subtype-specific genes signature by WGCNA for prognostic prediction in diffuse type gastric cancer
Cited by: 6
Author(s): Qi Zhou, Liqun Zhou, Shihao Li, Yi‐Wu Yuan, Li Liu, Jinliang Wang, Deng-Zhong Wu, You Wu, Lin Xin
Software Mentions: 6
Published: about 4 years ago

10.1093/g3journal/jkab248

Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine
Cited by: 5
Author(s): Charlotte Brault, Agnès Doligez, Le Cunff, Aude Coupel‐Ledru, Thierry Simonneau, Julien Chiquet, Patrice This, Timothée Flutre
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.732447

Comprehensive Molecular Analyses of a Six-Gene Signature for Predicting Late Recurrence of Hepatocellular Carcinoma
Cited by: 7
Author(s): Yuyuan Zhang, Xinwei Han, Xin Li, Long Liu, Libo Wang, Xinwei Han, Zhen Li
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pcbi.1007337

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets
Cited by: 15
Author(s): M. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M.L. Emmett, Fatin N Zainul Abidin, Nisar Ahmed Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A-Ling, Berthold Göttgens, Georges Lacaud, Valérie Kouskoff, Constanze Bonifer, David R. Westhead
Software Mentions: 6
Published: about 5 years ago

10.1186/s12859-021-04189-2

A novel miRNA-based classification model of risks and stages for clear cell renal cell carcinoma patients
Cited by: 11
Author(s): Eskezeia Y. Dessie, Jeffrey J. P. Tsai, Jan‐Gowth Chang, Ka-Lok Ng
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.631803

Prognostic and Predictive Value of m6A “Eraser” Related Gene Signature in Gastric Cancer
Cited by: 14
Author(s): Xin Xu, Enbo Zhou, Jun Zheng, Chihao Zhang, Yinghua Zou, Jiayun Lin, Jiwei Yu
Software Mentions: 6
Published: over 3 years ago

10.1186/s12967-021-03012-z

Cancer-associated fibroblast infiltration in gastric cancer: the discrepancy in subtypes pathways and immunosuppression
Cited by: 18
Author(s): Xu Liu, Li Yao, Jingkun Qu, Lin Liu, Ning Lü, Jiansheng Wang, Zhang Jia
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pcbi.1008831

Accuracy in the prediction of disease epidemics when ensembling simple but highly correlated models
Cited by: 9
Author(s): Denis A. Shah, E. D. De Wolf, Pierce A. Paul, L. V. Madden
Software Mentions: 6
Published: over 3 years ago

10.1186/s12859-021-04264-8

mLoc-mRNA: predicting multiple sub-cellular localization of mRNAs using random forest algorithm coupled with feature selection via elastic net
Cited by: 6
Author(s): Prabina Kumar Meher, Anil Rai, Atmakuri Ramakrishna Rao
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0199758

Antipsychotic prescribing patterns on admission to and at discharge from a tertiary care program for treatment-resistant psychosis
Cited by: 7
Author(s): Lik Hang N. Lee, Ric M. Procyshyn, Ralph de Vere White, Todd S. Woodward, William G. Honer, Alasdair M. Barr
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pcbi.1009197

Multidimensional analysis of immune responses identified biomarkers of recent Mycobacterium tuberculosis infection
Cited by: 1
Author(s): Tessa Lloyd, Pia Steigler, Cheleka A M Mpande, Virginie Rozot, Boitumelo Mosito, Constance Schreuder, Timothy D. Reid, Mark Hatherill, Thomas J. Scriba, Francesca Little, Elisa Nemes
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pcbi.1008315

Leveraging functional annotation to identify genes associated with complex diseases
Cited by: 13
Author(s): Wei Liu, Mo Li, Wenfeng Zhang, Geyu Zhou, Weijie Xing, Jiawei Wang, Qiongshi Lu, Hongyu Zhao
Software Mentions: 6
Published: about 4 years ago

10.3389/fonc.2021.580886

Radiomics Nomogram for Identifying Sub-1 cm Benign and Malignant Thyroid Lesions
Cited by: 7
Author(s): Xinxin Wu, Jingjing Li, Yakui Mou, Yao Yao, Jingjing Cui, Ning Mao, Xuejiao Song
Software Mentions: 6
Published: over 3 years ago

10.1098/rsob.160183

Prediction and validation of protein–protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach
Cited by: 10
Author(s): Ashley J. Waardenberg, Homan Bernou, Mohamed Salim, Richard P. Harvey, Romaric Bouveret
Software Mentions: 6
Published: about 8 years ago

10.1515/med-2021-0284

Nomogram prediction model for renal anaemia in IgA nephropathy patients
Cited by: 3
Author(s): Fēi Li, Ri-bao Wei, Yang Wang, Ting-Yu Su, Ping Li, Mengjie Huang, Xiangmei Chen
Software Mentions: 6
Published: almost 4 years ago

10.3389/fnagi.2021.602781

Exploring the Key Genes and Identification of Potential Diagnosis Biomarkers in Alzheimer’s Disease Using Bioinformatics Analysis
Cited by: 20
Author(s): Wuhan Yu, Weihua Yu, Yan Yang, Yang Lü
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-87982-6

Association among extracellular superoxide dismutase genotype, plasma concentration, and comorbidity in the very old and centenarians
Cited by: 7
Author(s): Takashi Sasaki, Yukiko Abe, M. Takayama, Tetsuo Adachi, Hideyuki Okano, Nobuyoshi Hirose, Yasumichi Arai
Software Mentions: 6
Published: over 3 years ago

10.18632/aging.102817

Identification of prognostic immune-related genes in the tumor microenvironment of endometrial cancer
Cited by: 61
Author(s): Peigen Chen, Yongtao Yang, Yu Zhang, Senwei Jiang, Xiaomao Li, Jing Wan
Software Mentions: 6
Published: almost 5 years ago

10.3389/fonc.2021.675545

Identification of a Ferroptosis-Related LncRNA Signature as a Novel Prognosis Model for Lung Adenocarcinoma
Cited by: 52
Author(s): Lu Lu, Leping Liu, Qiangqiang Zhao, Rong Gui, Qiancheng Zhao
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0222733

BWGS: A R package for genomic selection and its application to a wheat breeding programme
Cited by: 30
Author(s): Gilles Charmet, Louis-Gautier Tran, Jérôme Auzanneau, Renaud Rincent, Sophie Bouchet
Software Mentions: 6
Published: over 4 years ago

10.3389/fnins.2019.01203

Multimodal Integration of Brain Images for MRI-Based Diagnosis in Schizophrenia
Cited by: 25
Author(s): Raymond Salvador, Erick Jorge Canales-Rodríguez, Amalia Guerrero-Pedraza, Salvador Sarró, Diana Tordesillas‐Gutiérrez, Teresa Maristany, Benedicto Crespo‐Facorro, Peter McKenna, Edith Pomarol‐Clotet
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.8827

Identification of a three-m6A related gene risk score model as a potential prognostic biomarker in clear cell renal cell carcinoma
Cited by: 21
Author(s): Yiqiao Zhao, Zijia Tao, Xiaonan Chen
Software Mentions: 6
Published: over 4 years ago

10.3389/fninf.2018.00036

Unraveling the Complexity of Amyotrophic Lateral Sclerosis Survival Prediction
Cited by: 32
Author(s): Stephen R. Pfohl, Renaid B. Kim, Grant Coan, Cassie S. Mitchell
Software Mentions: 6
Published: over 6 years ago

Projects: cran: glmnet

Papers Mentioning glmnet 1,607