cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/ani11040992

Benefits of Silvopastoral Systems for Keeping Beef Cattle
Cited by: 9
Author(s): Stella Huertas, Pablo Ernesto Bobadilla, Ignacio Alcántara, Emilie Akkermans, F.J.C.M. van Eerdenburg
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-55908-y

De novo Assembly of the Brugia malayi Genome Using Long Reads from a Single MinION Flowcell
Cited by: 5
Author(s): Joseph R. Fauver, John Martin, Gary J. Weil, Makedonka Mitreva, Peter Fischer
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0255353

Gender differences in physical activity and sedentary behavior: Results from over 200,000 Latin-American children and adolescents
Cited by: 27
Author(s): Javier Brazo-Sayavera, Salomé Aubert, Joel D. Barnes, Silvia A. González, Mark S. Tremblay
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0247841

Comprehensive in silico analysis and molecular dynamics of the superoxide dismutase 1 (SOD1) variants related to amyotrophic lateral sclerosis
Cited by: 20
Author(s): Gabriel Rodrigues Coutinho Pereira, Bárbara de Azevedo Abrahim Vieira, Joelma Freire De Mesquita
Software Mentions: 2
Published: over 5 years ago

10.1002/ajb2.1676

Resolving species boundaries in a recent radiation with the Angiosperms353 probe set: the Lomatium packardiae/L. anomalum clade of the L. triternatum (Apiaceae) complex
Cited by: 10
Author(s): Michael V. Ottenlips, Donald H. Mansfield, Sven Buerki, Mary Ann Feist, Stephen R. Downie, Steven Dodsworth, Félix Forest, Gregory M. Plunkett, James F. Smith
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-56206-3

Dynamics and stabilization of the rumen microbiome in yearling Tibetan sheep
Cited by: 33
Author(s): Lei Wang, Ke Zhang, Chenguang Zhang, Yan Feng, Xiao‐Wei Zhang, Xiaolong Wang, Guofang Wu
Software Mentions: 2
Published: over 6 years ago

10.3390/ijerph14111404

Using Gamma and Quantile Regressions to Explore the Association between Job Strain and Adiposity in the ELSA-Brasil Study: Does Gender Matter?
Cited by: 4
Author(s): Maria de Jesus Mendes da Fonseca, Leidjaira Lopes Juvanhol, Lúcia Rotenberg, Aline Araújo Nobre, Rosane Härter Griep, Márcia Guimarães de Mello Alves, Letícia de Oliveira Cardoso, Luana Giatti, Maria Angélica Nunes, Estela M. L. Aquino, Dóra Chor
Software Mentions: 2
Published: almost 9 years ago

10.1128/mSystems.00261-19

Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults
Cited by: 193
Author(s): Jacobo de la Cuesta-Zuluaga, Scott T. Kelley, Yingfeng Chen, Juan S. Escobar, Noel T. Mueller, Ruth E. Ley, Daniel McDonald, Shi Huang, Austin D. Swafford, Rob Knight, Varykina G. Thackray
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2021.667904

Bioinformatics Profiling of Five Immune-Related lncRNAs for a Prognostic Model of Hepatocellular Carcinoma
Cited by: 17
Author(s): Fahong Wu, Hangzhi Wei, Guiyuan Liu, Youcheng Zhang
Software Mentions: 2
Published: about 5 years ago

10.1242/bio.058676

Dorso-ventral heterogeneity in tracheal basal stem cells
Cited by: 2
Author(s): Tomomi Tadokoro, Keisuke Tanaka, Shun Osakabe, Mimoko Kato, Hisato Kobayashi, Brigid L.M. Hogan, Hideki Taniguchi
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-56632-3

Matrisome-Associated Gene Expression Patterns Correlating with TIMP2 in Cancer
Cited by: 21
Author(s): David Peeney, Yu Fan, Trinh Nguyen, Daoud Meerzaman, William G. Stetler-Stevenson
Software Mentions: 2
Published: over 6 years ago

10.7150/jca.34465

High expression of CHML predicts poor prognosis of multiple myeloma
Cited by: 2
Author(s): Weilong Zhang, Ling Cao, Xiaoni Liu, Xue He, Ye Zhang, Zuozhen Yang, Ping Yang, Jing Wang, Kai Hu, Xiuru Zhang, Weiyou Liu, Xiaoliang Yuan, Hongmei Jing
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-56526-4

Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.)
Cited by: 22
Author(s): Alicia Talavera, Aboozar Soorni, Aureliano Bombarely, Antonio J. Matas, J. I. Hormaza
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms9091834

Comparison of Quantification Methods to Estimate Farm-Level Usage of Antimicrobials in Medicated Feed in Dairy Farms from Québec, Canada
Cited by: 1
Author(s): Hélène Lardé, David Francoz, Jean-Philippe Roy, Marie Archambault, Jonathan Massé, Marie-Ève Paradis, Simon Dufour
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12859-014-0372-4

A fixed-point algorithm for estimating amplification efficiency from a polymerase chain reaction dilution series
Cited by: 9
Author(s): Michael E. Jones, George C. Mayne, Tingting Wang, David I. Watson, Damian J. Hussey
Software Mentions: 2
Published: over 11 years ago

10.7150/ijms.50873

Clinical characteristics and follow-up analysis of 324 discharged COVID-19 patients in Shenzhen during the recovery period
Cited by: 22
Author(s): Han‐Qing Liu, Bo Yuan, Yu An, Kai-Jing Chen, Qi Hu, Xiaopeng Hu, Jiuliang Zhao, Dong Yu, Yongxin Chen, Weixin Li, Chang-Qing Sun, Jian-Chun Wang, Cheng Wang, Shuo Song
Software Mentions: 2
Published: over 5 years ago

10.3390/v11080708

Genome of Alaskapox Virus, A Novel Orthopoxvirus Isolated from Alaska
Cited by: 31
Author(s): Crystal M. Gigante, Jinxin Gao, Shiyuyun Tang, Andrea M. McCollum, Kimberly Wilkins, Mary G. Reynolds, Whitni Davidson, Joseph McLaughlin, Victoria A. Olson, Li Yu
Software Mentions: 2
Published: about 7 years ago

10.12688/aasopenres.13074.3

Impact of 1.5 oC and 2 oC global warming scenarios on malaria transmission in East Africa
Cited by: 1
Author(s): Obed M. Ogega, Moses Alobo
Software Mentions: 2
Published: over 5 years ago

10.1093/bioinformatics/bty614

Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations
Cited by: 5
Author(s): Alex N. Salazar, Thomas Abeel
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0238950

Peel-1 negative selection promotes screening-free CRISPR-Cas9 genome editing in Caenorhabditis elegans
Cited by: 4
Author(s): Troy A. McDiarmid, Vinci Au, Donald G. Moerman, Catharine H. Rankin
Software Mentions: 2
Published: almost 6 years ago

10.1093/bioinformatics/btw325

GenVisR: Genomic Visualizations in R
Cited by: 220
Author(s): Zachary L. Skidmore, Alex H. Wagner, Robert Lesurf, Katie M. Campbell, Jason Kunisaki, Obi L. Griffith
Software Mentions: 2
Published: about 10 years ago

10.3390/microorganisms9051051

Applications of Blocker Nucleic Acids and Non-Metazoan PCR Improves the Discovery of the Eukaryotic Microbiome in Ticks
Cited by: 2
Author(s): Yurie Taya, Gohta Kinoshita, Wessam Mohamed Ahmed Mohamed, Mohamed Abdallah Mohamed Moustafa, Shohei Ogata, Elisha Chatanga, Yuma Ohari, Kodai Kusakisako, Keita Matsuno, Nariaki Nonaka, Ryo Nakao
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.607989

AGAP2-AS1 May Promote the Occurrence and Development of Glioblastoma by Sponging miR-9-5p: Evidence From a ceRNA Network
Cited by: 4
Author(s): Xiaobin Luo, Tianqi Tu, Yali Zhong, Shangyi Xu, Xiangzhou Chen, Ligang Chen, Fubing Yang
Software Mentions: 2
Published: over 5 years ago

10.1093/gbe/evu263

Global Phylogenomic Analysis of NonencapsulatedStreptococcus pneumoniaeReveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages
Cited by: 43
Author(s): Markus Hilty, Daniel Wüthrich, Susannah J. Salter, Hans Jürg Engel, Samuel Campbell, Raquel Sá-Leão, Hermı́nia de Lencastre, Peter W. M. Hermans, Ewa Sadowy, Paul Turner, Claire Chewapreecha, Mathew Diggle, Gerd Pluschke, Lesley McGee, Özgen Köseoğlu Eser, Donald E. Low, Heidi Smith‐Vaughan, Andrea Endimiani, Marianne Küffer, Mélanie Dupasquier, Emmanuel Beaudoing, Johann Weber, Rémy Bruggmann, William P. Hanage, Julian Parkhill, Lucy J. Hathaway, Kathrin Mühlemann, Stephen D. Bentley
Software Mentions: 2
Published: over 11 years ago

10.3389/fonc.2021.721797

The Oncogenic Role of APC/C Activator Protein Cdc20 by an Integrated Pan-Cancer Analysis in Human Tumors
Cited by: 14
Author(s): Fei Wu, Yang Sun, Jie Chen, Hongyun Liu, Kang Yao, Yongjun Liu, Qingyong Liu, Jiajü Lü
Software Mentions: 2
Published: almost 5 years ago

10.1093/bioinformatics/bty832

A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT
Cited by: 11
Author(s): Anamaria Crisan, Jennifer L. Gardy, Tamara Munzner
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0228397

Introgression of chromosomal segments conferring early heading date from wheat diploid progenitor, Aegilops tauschii Coss., into Japanese elite wheat cultivars
Cited by: 8
Author(s): Shigeo Takumi, Seito Mitta, Saburô Kômura, Tatsuya Ikeda, Hitoshi Matsunaka, Kazuhiro Sato, Kentaro Yoshida, Koji Murai
Software Mentions: 2
Published: over 6 years ago

10.12688/wellcomeopenres.15304.3

Representing antibiotic relationships using measurements of efficacy against clinical isolates
Cited by: 1
Author(s): Liam P. Shaw
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants9121628

Genomic Regions Associated with the Control of Flowering Time in Durum Wheat
Cited by: 13
Author(s): Priyanka Gupta, Hafssa Kabbaj, Khaoula El Hassouni, Marco Maccaferri, Miguel Sánchez-García, Roberto Tuberosa, Filippo M. Bassi
Software Mentions: 2
Published: over 5 years ago

10.18632/aging.103714

The impact of folate and vitamin B12 status on cognitive function and brain atrophy in healthy elderly and demented Austrians, a retrospective cohort study
Cited by: 5
Author(s): Jasmin Rabensteiner, Edith Hofer, Günter Fauler, Eva Fritz-Petrin, Thomas Benke, Peter Dal‐Bianco, Gerhard Ransmayr, Reinhold Schmidt, Markus Herrmann
Software Mentions: 2
Published: about 6 years ago

10.1128/mSystems.00320-19

Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils
Cited by: 26
Author(s): Adrienne B. Narrowe, Mikayla A. Borton, David Hoyt, Garrett J. Smith, Rebecca A. Daly, Jordan C. Angle, Elizabeth K. Eder, Allison R. Wong, Richard A. Wolfe, Alexandra Pappas, Gil Bohrer, Christopher S. Miller, Kelly Wrighton
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-57499-5

Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight
Cited by: 26
Author(s): Gerbert Sylvestre Dossa, Ian Lorenzo Quibod, Genelou Atienza-Grande, Ricardo Oliva, E. Maiß, Casiana Vera Cruz, Kerstin Wydra
Software Mentions: 2
Published: over 6 years ago

10.1186/s42234-020-00057-1

The role of nicotinic receptors in SARS-CoV-2 receptor ACE2 expression in intestinal epithelia
Cited by: 5
Author(s): Anne S. ten Hove, David J. Brinkman, Andrew Y. Li Yim, Caroline Verseijden, Theo B.M. Hakvoort, Iris Admiraal, Olaf Welting, Patricia H. P. van Hamersveld, Valérie Sinniger, Bruno Bonaz, Misha D. P. Luyer, Wouter J. de Jonge
Software Mentions: 2
Published: almost 6 years ago

10.3897/BDJ.6.e27722

An interactive key to Central European species of the Pteromalus albipennis species group and other species of the genus (Hymenoptera: Chalcidoidea: Pteromalidae), with the description of a new species
Cited by: 8
Author(s): Fabian Klimmek, Hannes Baur
Software Mentions: 2
Published: almost 8 years ago

10.1111/1462-2920.14896

Ecogenomics of the SAR11 clade
Cited by: 55
Author(s): Jose M. Haro‐Moreno, Francisco Rodrı́guez-Valera, Riccardo Rosselli, Francisco Martínez-Hernández, Juan J. Roda‐Garcia, Mónica Lluesma Gómez, Òscar Fornas, Manuel Martínez‐García, Mario López‐Pérez
Software Mentions: 2
Published: over 6 years ago

10.3897/BDJ.5.e20577

Understory dominance and the new climax: Impacts of Japanese knotweed (Fallopia japonica) invasion on native plant diversity and recruitment in a riparian woodland
Cited by: 9
Author(s): Matthew Wilson, Anna Freundlich, Christopher T. Martine
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12936-021-03905-w

The prevalence and density of asymptomatic Plasmodium falciparum infections among children and adults in three communities of western Kenya
Cited by: 3
Author(s): Christina Salgado, George Ayodo, Michael D. Macklin, Meetha P. Gould, Srinivas Nallandhighal, Eliud O. Odhiambo, Andrew Obala, Wendy Prudhomme O’Meara, Chandy C. John, Tuan M. Tran
Software Mentions: 2
Published: almost 5 years ago

10.3897/BDJ.9.e67677

Morphometric variation in wolves and golden jackal in India (Mammalia, Carnivora)
Cited by: 5
Author(s): Yellapu Srinivas, Yadvendradev V. Jhala
Software Mentions: 2
Published: almost 5 years ago

10.3390/v12090948

Identification and Prevalence of Phascolarctid Gammaherpesvirus Types 1 and 2 in South Australian Koala Populations
Cited by: 2
Author(s): Vasilli Kasimov, Tamsyn Stephenson, Natasha Speight, Anne‐Lise Chaber, Wayne Boardman, Ruby Easther, Farhid Hemmatzadeh
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-57512-x

CRL4-Cereblon complex in Thalidomide Embryopathy: a translational investigation
Cited by: 7
Author(s): Thayne Woycinck Kowalski, João Luiz Ellera Gomes, Gabriela Barreto Caldas-Garcia, Lucas Rosa Fraga, Vanessa Rodrigues Paixão‐Côrtes, Mariana Recamonde‐Mendoza, Maria Teresa Vieira Sanseverino, Lavínia Schüler‐Faccini, Fernanda S.L. Vianna
Software Mentions: 2
Published: over 6 years ago

10.3897/BDJ.8.e52233

New insights from museum specimens: a case of Viviparidae (Caenogastropoda: Mollusca) in Iwakawa’s collection preserved in the National Museum of Nature and Science, Tokyo
Cited by: 1
Author(s): Takahito Saito, Osamu Kagawa
Software Mentions: 2
Published: over 5 years ago

10.3897/BDJ.9.e60665

Distribution of wild bee (Hymenoptera: Anthophila) and hoverfly (Diptera: Syrphidae) communities within farms undergoing ecological transition
Cited by: 1
Author(s): Grégoire Noël, Julie Bonnet, Sylvain Everaerts, Anouk Danel, Alix Calderan, Alexis de Liedekerke, Clotilde de Montpellier d'Annevoie, Frédéric Francis, Laurent Serteyn
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-57665-9

Proteomic analysis reveals potential factors associated with enhanced EPS production in Streptococcus thermophilus ASCC 1275
Cited by: 11
Author(s): Aparna Padmanabhan, Tong Yin, Qinglong Wu, Clive Lo, Nagendra P. Shah
Software Mentions: 2
Published: over 6 years ago

10.1186/s12936-015-0608-4

Cytokine and chemokine profile of the innate and adaptive immune response of schistosoma haematobium and plasmodium falciparum single and co-infected school-aged children from an endemic area of Lambaréné, Gabon
Cited by: 20
Author(s): Ulysse Ateba-Ngoa, Ayôla Akim Adegnika, Jeannot Fréjus Zinsou, Roland Fabrice Kassa Kassa, Hermelijn H. Smits, Marguerite Massinga Loembé, Benjamin Mordmüller, Peter G. Kremsner, Maria Yazdanbakhsh
Software Mentions: 2
Published: over 11 years ago

10.1186/s12863-020-00858-y

Transcriptomic comparison of communally reared wild, domesticated and hybrid Atlantic salmon fry under stress and control conditions
Cited by: 4
Author(s): Beatrix Bicskei, John B. Taggart, James E. Bron, Kevin A. Glover
Software Mentions: 2
Published: about 6 years ago

10.1111/1462-2920.15269

Unravelling lactate‐acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics
Cited by: 34
Author(s): Sudarshan A. Shetty, Sjef Boeren, Thi Phuong Nam Bui, Hauke Smidt, Willem M. de Vos
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms19072079

The Transcriptomic Landscape of Gastric Cancer: Insights into Epstein-Barr Virus Infected and Microsatellite Unstable Tumors
Cited by: 24
Author(s): Irene Gullo, Joana Carvalho, Diana Martins, Diana Lemos, Ana Rita Monteiro, Marta Ferreira, Kakoli Das, Patrick Tan, Carla Oliveíra, Fátima Carneiro, Patrícia Oliveira
Software Mentions: 2
Published: about 8 years ago

10.3390/jof7090724

Molecular Insights into Defense Responses of Vietnamese Maize Varieties to Fusarium verticillioides Isolates
Cited by: 9
Author(s): Trang Minh Tran, Maarten Ameye, Sofie Landschoot, Frank Devlieghere, Sarah De Saeger, Mia Eeckhout, Kris Audenaert
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13568-017-0374-5

Characterization of the gut microbiota in the golden takin (Budorcas taxicolor bedfordi)
Cited by: 18
Author(s): Jun Chen, Huanxin Zhang, Xiaoyang Wu, Shuai Shang, Jun Yan, Chen Yao, Honghai Zhang, Xuexi Tang
Software Mentions: 2
Published: over 9 years ago

10.3389/fonc.2020.569668

Novel Non-Coding Transcript in NR4A3 Locus, LncNR4A3, Regulates RNA Processing Machinery Proteins and NR4A3 Expression
Cited by: 1
Author(s): Ada Congrains, Fernanda Soares Niemann, Adriana da Silva Santos Duarte, Karla Priscila Ferro, Sara T. Olalla-Saad
Software Mentions: 2
Published: over 5 years ago

10.1186/s12940-015-0082-z

Building-related health impacts in European and Chinese cities: a scalable assessment method
Cited by: 7
Author(s): Jouni T. Tuomisto, Marjo Niittynen, Erkki Pärjälä, Arja Asikainen, Laura Pérez, Stephan Trüeb, Matti Jantunen, Nino Künzli, Clive E. Sabel
Software Mentions: 2
Published: over 10 years ago

10.1186/s12863-020-00839-1

Antimicrobial peptide and sequence variation along a latitudinal gradient in two anurans
Cited by: 5
Author(s): María Cortázar-Chinarro, Yvonne Meyer‐Lucht, Tom van der Valk, Àlex Richter‐Boix, Anssi Laurila, Jacob Höglund
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-57975-y

Unorthodox features in two venerid bivalves with doubly uniparental inheritance of mitochondria
Cited by: 24
Author(s): Charlotte Capt, Karim Bouvet, Davide Guerra, Brent M. Robicheau, Donald T. Stewart, Eric Pante, Sophie Breton
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58093-5

DNA hypomethylation during MSC chondrogenesis occurs predominantly at enhancer regions
Cited by: 14
Author(s): M.J. Barter, Catherine Bui, Kathleen Cheung, Julia Falk, Rodolfo Gómez, Andrew Skelton, Hannah R Elliott, Louise N. Reynard, David A. Young
Software Mentions: 2
Published: over 6 years ago

10.1186/s42523-020-00030-y

Putative modulation of the gut microbiome by probiotics enhances preference for novelty in a preliminary double-blind placebo-controlled study in ferrets
Cited by: 5
Author(s): Supritha Dugyala, Travis Ptacek, Jeremy M. Simon, Yuhui Li, Flavio Fröhlich
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58326-7

Unique natural killer cell subpopulations are associated with exacerbation risk in chronic obstructive pulmonary disease
Cited by: 12
Author(s): Andrew R. Osterburg, Laura Lach, Ralph J. Panos, Michael T. Borchers
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms9081546

Experimental Selection of Paromomycin Resistance in Leishmania donovani Amastigotes Induces Variable Genomic Polymorphisms
Cited by: 6
Author(s): Sarah Hendrickx, João Luís Reis-Cunha, Sarah Forrester, Daniel C. Jeffares, Guy Caljon
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms8081105

Staphylococcus saccharolyticus: An Overlooked Human Skin Colonizer
Cited by: 14
Author(s): Charlotte Marie Ahle, Kristian Stødkilde, Mastaneh Afshar, Anja Poehlein, Lesley A. Ogilvie, Bo Söderquist, Jennifer Hüpeden, Holger Brüggemann
Software Mentions: 2
Published: about 6 years ago

10.1186/s12863-017-0557-8

Genetic variation in populations of the earthworm, Lumbricus rubellus, across contaminated mine sites
Cited by: 28
Author(s): C. A. Anderson, Luís Cunha, Pierfrancesco Sechi, Peter Kille, David J. Spurgeon
Software Mentions: 2
Published: almost 9 years ago

10.3390/bs11040051

Cognition across the Lifespan: Investigating Age, Sex, and Other Sociodemographic Influences
Cited by: 8
Author(s): Emily S. Nichols, Conor Wild, Adrian M. Owen, Andrea Soddu
Software Mentions: 2
Published: over 5 years ago

10.1186/s42523-019-0010-6

The microbiome of the invertebrate model host Galleria mellonella is dominated by Enterococcus
Cited by: 30
Author(s): Camille Nina Allonsius, Wannes Van Beeck, Ilke De Boeck, Stijn Wittouck, Sarah Lebeer
Software Mentions: 2
Published: almost 7 years ago

10.3390/microorganisms9020235

Living Lithic and Sublithic Bacterial Communities in Namibian Drylands
Cited by: 6
Author(s): Steffi Genderjahn, Simon Lewin, Fabian Horn, Anja M. Schleicher, Kai Mangelsdorf, Dirk Wagner
Software Mentions: 2
Published: over 5 years ago

10.3758/s13428-020-01527-9

Samply: A user-friendly smartphone app and web-based means of scheduling and sending mobile notifications for experience-sampling research
Cited by: 9
Author(s): Yury Shevchenko, Tim Kuhlmann, Ulf‐Dietrich Reips
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00905-19

Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments
Cited by: 21
Author(s): Asier Zaragoza-Solas, Francisco Rodrı́guez-Valera, Mario López‐Pérez
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58563-w

Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions
Cited by: 50
Author(s): Jakob Gierten, Christian Pylatiuk, Omar T. Hammouda, Christian Schock, Johannes Stegmaier, Joachim Wittbrodt, Jochen Gehrig, Felix Loosli
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20246339

Metabolomic Profile of Oviductal Extracellular Vesicles across the Estrous Cycle in Cattle
Cited by: 28
Author(s): Julie Gatien, Pascal Mermillod, Guillaume Tsikis, Ophélie Bernardi, Sarah Janati Idrissi, Rustem Uzbekov, Daniel Le Bourhis, Pascal Salvetti, Carmen Almiñana, Marie Saint‐Dizier
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00768-19

Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil
Cited by: 43
Author(s): Lauren Alteio, Frederik Schulz, Rekha Seshadri, Neha Varghese, William G Rodríguez-Reillo, Elizabeth Ryan, Danielle Goudeau, Stephanie A. Eichorst, Rex R. Malmstrom, Robert M. Bowers, Laura A. Katz, Jeffrey L. Blanchard, Tanja Woyke
Software Mentions: 2
Published: over 6 years ago

10.1534/g3.118.200398

mTOR Complex 1 Implicated in Aphid/Buchnera Host/Symbiont Integration
Cited by: 8
Author(s): Edward James, Honglin Feng, Alex C. C. Wilson
Software Mentions: 2
Published: almost 8 years ago

10.1128/mSystems.00910-19

Sex Bias in Gut Microbiome Transmission in Newly Paired Marmosets (Callithrix jacchus)
Cited by: 24
Author(s): Lishan Zhu, Jonathan B. Clayton, Mallory J. Suhr Van Haute, Qinnan Yang, Haley Hassenstab, Aaryn C. Mustoe, Dan Knights, Andrew K. Benson, Jeffrey A. French
Software Mentions: 2
Published: over 6 years ago

10.1186/s12936-018-2521-0

Mapping a Plasmodium transmission spatial suitability index in Solomon Islands: a malaria monitoring and control tool
Cited by: 7
Author(s): Isabelle Jeanne, Lynda E. Chambers, Adna Kazazic, Tanya L. Russell, Albino Bobogare, Hugo Bugoro, Francis Otto, George Fafale, Amanda Amjadali
Software Mentions: 2
Published: almost 8 years ago

10.1093/beheco/arw119

Exploration is dependent on reproductive state, not social state, in a cooperatively breeding bird
Cited by: 5
Author(s): Hannah A. Edwards, Hannah L. Dugdale, David S. Richardson, Jan Komdeur, Terry Burke
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-020-58646-8

Mapping patterns of abiotic and biotic stress resilience uncovers conservation gaps and breeding potential of Vigna wild relatives
Cited by: 32
Author(s): Maarten van Zonneveld, Mohamed Rakha, Shin yee Tan, Yi-Hung Chou, Ching-Huan Chang, Jo-yi Yen, Roland Schafleitner, Ramakrishnan M. Nair, Kunihiko Naito, Svein Øivind Solberg
Software Mentions: 2
Published: over 6 years ago

10.1186/s12936-019-2714-1

Evaluation of a push–pull system consisting of transfluthrin-treated eave ribbons and odour-baited traps for control of indoor- and outdoor-biting malaria vectors
Cited by: 21
Author(s): Arnold S. Mmbando, Elis P. A. Batista, Masoud Kilalangongono, Marceline Finda, Emmanuel P. Mwanga, Emmanuel W. Kaindoa, Khamis Kifungo, Rukiyah M. Njalambaha, Halfan S. Ngowo, Álvaro Eduardo Eiras, Fredros O. Okumu
Software Mentions: 2
Published: over 7 years ago

10.1530/ERC-17-0442

The microbiome in PTEN hamartoma tumor syndrome
Cited by: 5
Author(s): Victoria Byrd, Ted M. Getz, Roshan Padmanabhan, Hans Arora, Charis Eng
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-59338-z

Ultrasound localization microscopy of renal tumor xenografts in chicken embryo is correlated to hypoxia
Cited by: 46
Author(s): Matthew R. Lowerison, Chengwu Huang, Fabrice Lucien, Shigao Chen, Pengfei Song
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.61630

Loss of FLCN-FNIP1/2 induces a non-canonical interferon response in human renal tubular epithelial cells
Cited by: 11
Author(s): Iris E. Glykofridis, Jaco C. Knol, Jesper A. Balk, Denise Westland, Thang V. Pham, Sander R. Piersma, Sinéad M. Lougheed, Sepide Derakhshan, Puck Veen, Martin A. Rooimans, Saskia E. van Mil, Franziska Böttger, Pino J. Poddighe, Irma van de Beek, Jarno Drost, Fried Zwartkruis, Renée X. de Menezes, Hanne Meijers-Heijboer, Arjan C. Houweling, Connie R. Jiménez, Rob M. F. Wolthuis
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.611081

STAM Prolongs Clear Cell Renal Cell Carcinoma Patients' Survival via Inhibiting Cell Growth and Invasion
Cited by: 2
Author(s): Tuo Deng, Zihao He, Xiaolu Duan, Danan Gu, Chao Cai, Wenqi Wu, Yongda Liu, Guohua Zeng
Software Mentions: 2
Published: over 5 years ago

10.1186/s43591-021-00017-9

Microplastics in fecal samples of whale sharks (Rhincodon typus) and from surface water in the Philippines
Cited by: 10
Author(s): Mila Mi Hua Yong, Clara Leistenschneider, Joni Anne Miranda, Maria Kristina O. Paler, Christine Legaspi, Elitza S. Germanov, Gonzalo Araújo, Patricia Burkhardt‐Holm, Gabriel Erni-Cassola
Software Mentions: 2
Published: almost 5 years ago

10.1534/g3.118.200499

Bulked-Segregant Analysis Coupled to Whole Genome Sequencing (BSA-Seq) for Rapid Gene Cloning in Maize
Cited by: 49
Author(s): Harry Klein, Yuguo Xiao, Phillip A. Conklin, Rajanikanth Govindarajulu, Jacob A Kelly, Michael J. Scanlon, Clinton Whipple, Madelaine Bartlett
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12859-021-04345-8

The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma
Cited by: 4
Author(s): Xiaoxiao Zhao, Jianghuai Ji, Wang Shi-jia, Rendong Wang, Qiuhong Yu, Dongguo Li
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2020.00812

Back-Splicing Transcript Isoforms (Circular RNAs) Affect Biologically Relevant Pathways and Offer an Additional Layer of Information to Stratify NMIBC Patients
Cited by: 11
Author(s): Ankit Goel, Douglas G. Ward, Naheema S. Gordon, Ben Abbotts, Maurice P. Zeegers, Kar Keung Cheng, Nicholas D. James, Richard T. Bryan, Roland Arnold
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-59550-x

The effects of a multispecies synbiotic on microbiome-related side effects of long-term proton pump inhibitor use: A pilot study
Cited by: 14
Author(s): Angela Horvath, Bettina Leber, Nicole Feldbacher, Markus Steinwender, Irina Komarova, Florian Rainer, Andreas Blesl, Vanessa Stadlbauer
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0225073

Next generation sequencing and RNA-seq characterization of adipose tissue in the Nile crocodile (Crocodylus niloticus) in South Africa: Possible mechanism(s) of pathogenesis and pathophysiology of pansteatitis
Cited by: 3
Author(s): O. I. Azeez, Jan G. Myburgh, Anna-Marì Bosman, Jonathan Featherston, Kgomotso P. Sibeko-Matjilla, Marinda C. Oosthuizen, Joseph Panashe Chamunorwa
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0153631

The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii
Cited by: 36
Author(s): Stefano Bettinazzi, Federico Plazzi, Marco Passamonti
Software Mentions: 2
Published: over 10 years ago

10.3389/fonc.2021.608433

A Survival-Related Competitive Endogenous RNA Network of Prognostic lncRNAs, miRNAs, and mRNAs in Wilms Tumor
Cited by: 7
Author(s): Hengchen Liu, Mingzhao Zhang, Manyu Shi, Tingting Zhang, Zenan Zhang, QingBo Cui, Shaoyu Yang, ZhaoZhu Li
Software Mentions: 2
Published: over 5 years ago

10.1534/g3.118.200870

The Transcriptional Regulator Hbx1 Affects the Expression of Thousands of Genes in the Aflatoxin-Producing FungusAspergillus flavus
Cited by: 16
Author(s): Jeffrey W. Cary, Sarah Entwistle, Timothy Satterlee, Brian M. Mack, Matthew K. Gilbert, Perng‐Kuang Chang, Leslie L. Scharfenstein, Yanbin Yin, Ana M. Calvo
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0181617

Understanding spearfishing in a coral reef fishery: Fishers’ opportunities, constraints, and decision-making
Cited by: 14
Author(s): Tyler Pavlowich, Anne R. Kapuscinski
Software Mentions: 2
Published: about 9 years ago

10.7150/jca.48979

Screening and bioinformatical analysis of differentially expressed genes in nasopharyngeal carcinoma
Cited by: 3
Author(s): Weiqian Guo, Xiaomin Zheng, Hua Liu, Xiaohai Zheng, Yangyang Zhang, Bin Sun, Zhenchao Tao, Jin Gao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-58933-4

Androstenedione and testosterone but not progesterone are potential biomarkers of pregnancy in Humpback Whales (Megaptera novaeangliae) approaching parturition
Cited by: 17
Author(s): Greta Dalle Luche, Ashley S.P. Boggs, John R. Kucklick, Jasmin Groß, Darryl William Hawker, Susan Bengtson Nash
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-019-3173-y

EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data
Cited by: 15
Author(s): Chandler D. Gatenbee, Ryan O. Schenck, Rafael Bravo, Alexander R.A. Anderson
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-15-15

OncomiRdbB: a comprehensive database of microRNAs and their targets in breast cancer
Cited by: 16
Author(s): Rimpi Khurana, Vinod Kumar Verma, Abdul Rawoof, Shrish Tiwari, Rekha A. Nair, Ganesh Mahidhara, Mohammed M. Idris, Alan R. Clarke, Lekha Dinesh Kumar
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-020-59797-4

Decimated little brown bats show potential for adaptive change
Cited by: 23
Author(s): Giorgia G. Auteri, L. Lacey Knowles
Software Mentions: 2
Published: over 6 years ago

10.1136/bmjdrc-2020-001950

Development of a predictive risk model for all-cause mortality in patients with diabetes in Hong Kong
Cited by: 15
Author(s): Sharen Lee, Jiandong Zhou, Keith Sai Kit Leung, William Ka Kei Wu, Wing Tak Wong, Tong Liu, Ian Chi Kei Wong, Kamalan Jeevaratnam, Qingpeng Zhang, Gary Tse
Software Mentions: 2
Published: about 5 years ago

10.1136/bmjopen-2016-012471

Individual surgeon mortality rates: can outliers be detected? A national utility analysis
Cited by: 7
Author(s): Ewen M Harrison, Thomas M Drake, Stephen O’Neill, Catherine Shaw, O. James Garden, Stephen J. Wigmore
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12879-015-1063-0

Analysis of cerebrospinal fluid protein concentrations of patients with cryptococcal meningitis treated with antifungal agents
Cited by: 6
Author(s): Lien‐Hung Huang, Hui Yang, Junyan Qu, Yanbin Liu, Chengliang Zhong, Guangmin Tang, Ying Liu, Yao Huang, Xiaoju Lv
Software Mentions: 2
Published: about 11 years ago

10.1534/g3.118.200779

Medaka Population Genome Structure and Demographic History Described via Genotyping-by-Sequencing
Cited by: 12
Author(s): Takafumi Katsumura, Shoji Oda, Hiroshi Mikami, Hiroki Oota
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.10359

Exposure to low concentrations of pesticide stimulates ecological functioning in the dung beetle Onthophagus nuchicornis
Cited by: 5
Author(s): Paul Manning, G. Christopher Cutler
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms19030726

Functional Characterization of the Steroid Reductase Genes GmDET2a and GmDET2b from Glycine max
Cited by: 8
Author(s): Weige Huo, Bodi Li, Jiebing Kuang, Ping‐an He, Zhihao Xu, Jinxiang Wang
Software Mentions: 2
Published: over 8 years ago

10.17912/micropub.biology.000370

The S1A protease family members CG10764 and CG4793 regulate cellular immunity in Drosophila.
Cited by: 4
Author(s): Pooja Kr, Jonathan Lee, Nathan T. Mortimer
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms9020226

Helminth Interactions with Bacteria in the Host Gut Are Essential for Its Immunomodulatory Effect
Cited by: 3
Author(s): Milan Jirků, Zuzana Lhotská, Lucia Frgelecová, O Kadlecová, Klára J. Petrželková, Evan Morien, Kateřina Jirků-Pomajbíková
Software Mentions: 2
Published: over 5 years ago

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