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Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: almost 3 years ago
4,921 dependent packages
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Educational Contributors: wilke@austin.utexas.edu diggsb@ohsu.edu ruderman@usc.edu joran.elias@umontana.edu rjc2003@qatar-med.cornell.edu skopf@caltech.edu m.colombo@ed.ac.uk i.kosmidis@ucl.ac.uk melimore86@ufl.edu amurray@vt.edu nick.kennedy@ed.ac.uk dongzhuoer@mail.nankai.edu.cn benjamin.reisman@vanderbilt.edu briandk@umd.edu hye@ucsd.edu thiyanga.talagala@monash.edu brenstsr@miamioh.edu saladi@caltech.edu buyske@stat.rutgers.edu rjake@sas.upenn.edu mcmurdie@stanford.edu paul@stat.auckland.ac.nz claire.mcwhite@utexas.edu luke.mcguinness@bristol.ac.uk mdlama@wm.edu hjeppson@iastate.edu
Repository Activity:
Repository Owner: tidyverse (organization)
The tidyverse is a collection of R packages that share common principles and are designed to work together seamlessly
README Analysis:
Science Score: 100/100
Starting Score: 100 points
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  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +520 Educational commit emails
    26 contributors with educational email addresses
  • +18 Science terms in README
    9 scientific terms found in README
Very Likely Science (100)

Papers Mentioning ggplot2 11,441

10.1534/genetics.116.196964
A Bibliometric History of the Journal<i>GENETICS</i>
Cited by: 5
Author(s): Natalie Telis, Benjamin V. Lehmann, Marcus W. Feldman, Jonathan K. Pritchard
Software Mentions: 2
Published: over 9 years ago
10.1534/genetics.120.303378
Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human Genes
Cited by: 12
Author(s): Riddhiman K. Garge, Jon M Laurent, Aashiq H. Kachroo, Edward M. Marcotte
Software Mentions: 2
Published: about 6 years ago
10.1186/gb-2010-11-10-r102
An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation
Cited by: 39
Author(s): Gregory P Harhay, Timothy P. L. Smith, L. J. Alexander, Christian Haudenschild, J. W. Keele, Lakshmi K. Matukumalli, Steven G. Schroeder, Curtis P. Van Tassell, Cathy Gresham, Susan M. Bridges, Shane C. Burgess, Tad S. Sonstegard
Software Mentions: 2
Published: almost 16 years ago
10.1186/s13059-014-0469-0
Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes
Cited by: 137
Author(s): Adam Blattler, Lijing Yao, Heather Witt, Yu Guo, Charles M. Nicolet, Benjamin P. Berman, Peggy J. Farnham
Software Mentions: 2
Published: almost 12 years ago
10.1186/s13059-016-0879-2
Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer
Cited by: 174
Author(s): Holger Heyn, Enrique Vidal, Humberto J. Ferreira, Miguel Vizoso, Sergi Sayols, Antonio Gómez, Sebastian Morán, Raquel Boqué-Sastre, Sònia Guil, Anna Martínez-Cardús, Charles Y. Lin, Romina Royo, José Vicente Sánchez-Mut, Ramón Martínez, Marta Gut, David Torrents, Modesto Orozco, Richard A. Young, Manel Esteller
Software Mentions: 2
Published: over 10 years ago
10.1186/s13059-016-1130-x
Insights into the design and interpretation of iCLIP experiments
Cited by: 70
Author(s): Nejc Haberman, Ina Huppertz, Jan Attig, Julian König, Zhen Wang, Christian Hauer, Matthias W. Hentze, Andreas E. Kulozik, Hervé Le Hir, Tomaž Curk, Christopher R. Sibley, Kathi Zarnack, Jernej Ule
Software Mentions: 2
Published: over 9 years ago
10.1186/s13059-018-1507-0
Cancer expression quantitative trait loci (eQTLs) can be determined from heterogeneous tumor gene expression data by modeling variation in tumor purity
Cited by: 25
Author(s): Paul Geeleher, Aritro Nath, Fan Wang, Zhenyu Zhang, Alvaro N. Barbeira, Jessica Fessler, Robert L. Grossman, Cathal Seoighe, R. Stephanie Huang
Software Mentions: 2
Published: almost 8 years ago
10.1186/s13059-019-1765-5
Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters
Cited by: 41
Author(s): Cristian Crisan, Aroon T. Chande, Kenneth C. Williams, Vishnu Raghuram, Lavanya Rishishwar, Gabi Steinbach, Samit S. Watve, Peter Yunker, I. King Jordan, Brian K. Hammer
Software Mentions: 2
Published: about 7 years ago
10.1186/s13059-020-02080-6
Genomic analysis of the domestication and post-Spanish conquest evolution of the llama and alpaca
Cited by: 42
Author(s): Rong Fan, Zhongru Gu, Xuanmin Guang, Juan Carlos Marín, Valeria Varas, Benito A. González, Jane C. Wheeler, Yafei Hu, Erli Li, Xiaohui Sun, Xukui Yang, Chi Zhang, Wenjun Gao, Jianjun He, Kasper Munch, Russel Corbett-Detig, Mario Barbato, Shengkai Pan, Xiangjiang Zhan, Michael William Bruford, Changsheng Dong
Software Mentions: 2
Published: about 6 years ago
10.1093/gbe/evu263
Global Phylogenomic Analysis of Nonencapsulated<i>Streptococcus pneumoniae</i>Reveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages
Cited by: 43
Author(s): Markus Hilty, Daniel Wüthrich, Susannah J. Salter, Hans Jürg Engel, Samuel Campbell, Raquel Sá-Leão, Hermı́nia de Lencastre, Peter W. M. Hermans, Ewa Sadowy, Paul Turner, Claire Chewapreecha, Mathew Diggle, Gerd Pluschke, Lesley McGee, Özgen Köseoğlu Eser, Donald E. Low, Heidi Smith‐Vaughan, Andrea Endimiani, Marianne Küffer, Mélanie Dupasquier, Emmanuel Beaudoing, Johann Weber, Rémy Bruggmann, William P. Hanage, Julian Parkhill, Lucy J. Hathaway, Kathrin Mühlemann, Stephen D. Bentley
Software Mentions: 2
Published: over 11 years ago
10.1093/gbe/evab098
Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation
Cited by: 16
Author(s): Anna Tigano, Arne Jacobs, Aryn P. Wilder, Ankita Nand, Zhan Ye, Job Dekker, Nina Overgaard Therkildsen
Software Mentions: 2
Published: over 5 years ago
10.1186/s13073-015-0192-9
ENVE: a novel computational framework characterizes copy-number mutational landscapes in colorectal cancers from African American patients
Cited by: 2
Author(s): Vinay Varadan, Salendra Singh, Arman Nosrati, Lakshmeswari Ravi, James Lutterbaugh, Jill S. Barnholtz‐Sloan, Sanford D. Markowitz, Joseph E. Willis, Kishore Guda
Software Mentions: 2
Published: about 11 years ago
10.1007/s10886-020-01221-2
Composition of Strawberry Floral Volatiles and their Effects on Behavior of Strawberry Blossom Weevil, Anthonomus rubi
Cited by: 11
Author(s): Raimondas Mozūraitis, David R. Hall, Nina Trandem, Baiba Ralle, Kalle Tunström, Lene Sigsgaard, Catherine Baroffio, Michelle Fountain, J. V. Cross, Atle Wibe, Anna‐Karin Borg‐Karlson
Software Mentions: 2
Published: almost 6 years ago
10.1186/1758-2946-6-11
On the validity versus utility of activity landscapes: are all activity cliffs statistically significant?
Cited by: 9
Author(s): Rajarshi Guha, José L. Medina-Franco
Software Mentions: 2
Published: over 12 years ago
10.1172/JCI128865
Innate and adaptive nasal mucosal immune responses following experimental human pneumococcal colonization
Cited by: 33
Author(s): Simon P. Jochems, Karin de Ruiter, Carla Solórzano, Astrid Voskamp, Elena Mitsi, Elissavet Nikolaou, Beatriz F. Carniel, Sherin Pojar, Esther L. German, Jesús Reiné, Alessandra Soares‐Schanoski, Helen Hill, Rachel Robinson, Angela Hyder-Wright, Caroline M. Weight, Pascal F. Durrenberger, Robert S. Heyderman, Stephen B. Gordon, Hermelijn H. Smits, Britta C. Urban, Jamie Rylance, Andrea Collins, Mark D. Wilkie, L Lazarova, Samuel Leong, Maria Yazdanbakhsh, Daniela M. Ferreira
Software Mentions: 2
Published: almost 7 years ago
10.3390/jcm8010111
Colorectal Cancer Prognosis Is Not Associated with BRAF and KRAS Mutations-A STROBE Compliant Study
Cited by: 12
Author(s): Joon Hyop Lee, Ji-Young Ahn, Won Seo Park, Eun Kyung Choe, Eun Young Kim, Rumi Shin, Seung Chul Heo, Sua Jung, Kwangsoo Kim, Young Jun Chai, Han‐Jung Chae
Software Mentions: 2
Published: over 7 years ago
10.3390/jcm8101723
Monitoring and Determining Mitochondrial Network Parameters in Live Lung Cancer Cells
Cited by: 6
Author(s): Tamara Mirzapoiazova, Haiqing Li, Anusha Nathan, Saumya Srivstava, Mohd W. Nasser, Frances E. Lennon, Brian Armstrong, Isa Mambetsariev, Peiguo Chu, Srisairam Achuthan, Surinder K. Batra, Prakash Kulkarni, Ravi Salgia
Software Mentions: 2
Published: almost 7 years ago
10.3390/jcm9061741
Implications of Hereditary Origin on the Immune Phenotype of Mismatch Repair-Deficient Cancers: Systematic Literature Review
Cited by: 21
Author(s): Lena Bohaumilitzky, Magnus von Knebel Doeberitz, Matthias Kloor, Aysel Ahadova
Software Mentions: 2
Published: about 6 years ago
10.3390/jcm9082515
Effects of Time-Interval since Blood Draw and of Anticoagulation on Platelet Testing (Count, Indices and Impedance Aggregometry): A Systematic Study with Blood from Healthy Volunteers
Cited by: 15
Author(s): Michaël Hardy, Sarah Lessire, Sultan Kasikci, Justine Baudar, Maïté Guldenpfennig, Adrien Collard, Jean‐Michel Dogné, Bernard Châtelain, Hugues Jacqmin, Thomas Lecompte, François Mullier
Software Mentions: 2
Published: about 6 years ago
10.3390/jcm9092725
Survivorship in Colorectal Cancer: A Cohort Study of the Patterns and Documented Content of Follow-Up Visits
Cited by: 3
Author(s): Victoria Garwood, Karolina Lisy, Michael Jefford
Software Mentions: 2
Published: almost 6 years ago
10.3390/jcm9092945
Microbial Analysis of Saliva to Identify Oral Diseases Using a Point-of-Care Compatible qPCR Assay
Cited by: 13
Author(s): Pune Nina Paqué, Christopher Herz, Joël S Jenzer, Daniel B. Wiedemeier, Thomas Attin, Nagihan Bostancı, Georgios N. Belibasakis, Kai Bao, Philipp Körner, Tanja Fritz, Julia Prinz, Patrick R. Schmidlin, Thomas Thurnheer, Florian J Wegehaupt, Konstantinos Mitsakakis, Johannes R. Peham
Software Mentions: 2
Published: almost 6 years ago
10.3390/jcm10030445
T Cell Peptides Derived from Invasive Stages of Schistosoma mansoni as Potential Schistosomiasis Vaccine
Cited by: 0
Author(s): Julio López‐Abán, Belén Vicente, Elías Kabbas-Piñango, Juan Hernández-Goenaga, Javier Sánchez-Montejo, María Aguiriano, Esther del Olmo, Magnolia Vanegas, Manuel A. Patarroyo, Antonio Muro
Software Mentions: 2
Published: over 5 years ago
10.3390/jcm10071542
Relationship between Cardiopulmonary, Mitochondrial and Autonomic Nervous System Function Improvement after an Individualised Activity Programme upon Chronic Fatigue Syndrome Patients
Cited by: 9
Author(s): Sławomir Kujawski, Jo Cossington, Joanna Słomko, Monika Zawadka‐Kunikowska, Małgorzata Tafil-Klawe, Jacek J. Klawe, Katarzyna Buszko, Djordje G. Jakovljevic, Mariusz Kozakiewicz, Karl Morten, Helen Dawes, James Strong, Modra Murovska, Jessica Van Oosterwijck, Fernando Estévez‐López, Julia L. Newton, Lynette Hodges, Paweł Zalewski, Cfs
Software Mentions: 2
Published: over 5 years ago
10.1128/JCM.02070-19
Genomic Epidemiology and Evolution of Diverse Lineages of Clinical Campylobacter jejuni Cocirculating in New Hampshire, USA, 2017
Cited by: 5
Author(s): Cooper J. Park, Jinfeng Li, Xinglu Zhang, Fei Gao, Christopher S. Benton, Cheryl P. Andam
Software Mentions: 2
Published: about 6 years ago
10.1128/JCM.00941-20
Performance Characteristics of the Abbott Architect SARS-CoV-2 IgG Assay and Seroprevalence in Boise, Idaho
Cited by: 455
Author(s): Andrew Bryan, Gregory Pepper, Mark H. Wener, Susan L. Fink, Chihiro Morishima, Anu Chaudhary, Keith R. Jerome, Patrick C. Mathias, Alexander L. Greninger
Software Mentions: 2
Published: about 6 years ago
10.1080/10618600.2019.1654880
Scalable Bayesian Inference for Coupled Hidden Markov and Semi-Markov Models
Cited by: 18
Author(s): Panayiota Touloupou, Bärbel Finkenstädt, Simon E. F. Spencer
Software Mentions: 2
Published: almost 7 years ago
10.1111/jeb.13735
Oceanic dispersal barriers in a holoplanktonic gastropod
Cited by: 12
Author(s): Le Qin Choo, Thijs M.P. Bal, Erica Goetze, Katja T. C. A. Peijnenburg
Software Mentions: 2
Published: almost 6 years ago
10.1093/jxb/erab083
<i>Mythimna separata</i> herbivory primes maize resistance in systemic leaves
Cited by: 9
Author(s): Saif ul Malook, Yuxing Xu, Jinfeng Qi, Jing Li, Lei Wang, Jianqiang Wu
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.ppat.1004775
Bacterial Cooperation Causes Systematic Errors in Pathogen Risk Assessment due to the Failure of the Independent Action Hypothesis
Cited by: 26
Author(s): Daniel M. Cornforth, Andrew Matthews, Sam P. Brown, Ben Raymond
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.ppat.1004967
A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT
Cited by: 51
Author(s): Pengfei Ding, Kirsty A. McFarland, Sun Jin, Grace Tong, Bo Duan, Ally Yang, Timothy R. Hughes, Jun Liu, Simon L. Dove, William Wiley Navarre, Bin Xia
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.ppat.1005178
Trans-generational Immune Priming Protects the Eggs Only against Gram-Positive Bacteria in the Mealworm Beetle
Cited by: 56
Author(s): Aurore Dubuffet, Caroline Zanchi, Gwendoline Boutet, Jérôme Moreau, Maria Teixeira, Yannick Moret
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.ppat.1006815
The Wolbachia strain wAu provides highly efficient virus transmission blocking in Aedes aegypti
Cited by: 158
Author(s): Thomas H. Ant, Christie S. Herd, Vincent Geoghegan, Ary A. Hoffmann, Steven P. Sinkins
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.ppat.1006999
Varicella zoster virus productively infects human natural killer cells and manipulates phenotype
Cited by: 40
Author(s): Tessa Mollie Campbell, Brian P. McSharry, Megan Steain, Thomas Myles Ashhurst, Barry Slobedman, Allison Abendroth
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.ppat.1007420
Differential induction of interferon stimulated genes between type I and type III interferons is independent of interferon receptor abundance
Cited by: 89
Author(s): Kalliopi Pervolaraki, Soheil Rastgou Talemi, Dorothee Albrecht, Felix Bormann, Connor Bamford, Juan L. Mendoza, K. Christopher García, John McLauchlan, Thomas Höfer, Megan L. Stanifer, Steeve Boulant
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.ppat.1007531
Absence of adaptive evolution is the main barrier against influenza emergence in horses in Asia despite frequent virus interspecies transmission from wild birds
Cited by: 12
Author(s): Henan Zhu, Batchuluun Damdinjav, Gaëlle Gonzalez, Livia Victoria Patrono, Humberto Ramírez‐Mendoza, Julien A R Amat, Joanna Crispell, Yasmin A. Parr, Toni-Ann Hammond, Enkhtuvshin Shiilegdamba, Connie Y. H. Leung, Malik Peiris, John F. Marshall, Joseph Hughes, Martin Gilbert, Pablo R. Murcia
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.ppat.1007990
Caspase-11-dependent IL-1α release boosts Th17 immunity against Paracoccidioides brasiliensis
Cited by: 18
Author(s): Natália Ketelut-Carneiro, Camila Oliveira Silva Souza, Luciana Benevides, Luiz Gustavo Gardinassi, Maria Cláudia Silva, Lucas Tavares, Dario S. Zamboni, João Silva
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.ppat.1007651
The opportunistic pathogen Stenotrophomonas maltophilia utilizes a type IV secretion system for interbacterial killing
Cited by: 53
Author(s): Ethel Bayer-Santos, William Cenens, Bruno Y. Matsuyama, Gabriel Umaji Oka, Giancarlo Di Sessa, Izabel Del Valle Mininel, Tiago Lubiana, Chuck S. Farah
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.ppat.1008038
Subclinical in utero Zika virus infection is associated with interferon alpha sequelae and sex-specific molecular brain pathology in asymptomatic porcine offspring
Cited by: 14
Author(s): Ivan Trus, Daniel Udenze, Brian Cox, Nathalie G. Bérubé, Rebecca E. Nordquist, Franz Josef van der Staay, Yanyun Huang, Gary P. Kobinger, David Safronetz, Volker Gerdts, Uladzimir Karniychuk
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.ppat.1008561
Bactericidal type IV secretion system homeostasis in Xanthomonas citri
Cited by: 11
Author(s): William Cenens, Maxuel O. Andrade, E.E. Llontop, Consuelo Martı́nez, Germán G. Sgro, Chuck S. Farah
Software Mentions: 2
Published: about 6 years ago
10.1098/rsos.160712
Thermally moderated firefly activity is delayed by precipitation extremes
Cited by: 9
Author(s): Sara L. Hermann, Saisi Xue, Logan Rowe, Elizabeth Davidson-Lowe, Andrew C. Myers, Bahodir Eshchanov, Christie A. Bahlai
Software Mentions: 2
Published: over 9 years ago
10.1098/rsos.172212
<i>Leishmania naiffi</i> and <i>Leishmania guyanensis</i> reference genomes highlight genome structure and gene evolution in the <i>Viannia</i> subgenus
Cited by: 23
Author(s): Simone Coughlan, Alysha S. Taylor, Eoghan Feane, Mandy Sanders, Gabriele Schönian, James A. Cotton, Tim Downing
Software Mentions: 2
Published: over 8 years ago
10.1098/rsos.181730
Plastic multicellular development of <i>Myxococcus xanthus</i> : genotype–environment interactions in a physical gradient
Cited by: 16
Author(s): Natsuko Rivera‐Yoshida, Alejandro V. Arzola, Juan A. Arias Del Angel, Alessio Franci, Michael Travisano, Ana E. Escalante, Mariana Benítez
Software Mentions: 2
Published: over 7 years ago
10.1098/rsos.190090
Larval foraging decisions in competitive heterogeneous environments accommodate diets that support egg-to-adult development in a polyphagous fly
Cited by: 10
Author(s): Juliano Morimoto, Shabnam Tarahi Tabrizi, Ida Lundbäck, Bishwo P. Mainali, Phillip W. Taylor, Fleur Ponton
Software Mentions: 2
Published: over 7 years ago
10.1098/rsos.210140
Characterization of the RNA-interference pathway as a tool for reverse genetic analysis in the nascent phototrophic endosymbiosis, <i>Paramecium bursaria</i>
Cited by: 5
Author(s): Benjamin H. Jenkins, Finlay Maguire, Guy Leonard, Joshua D. Eaton, Steven West, Benjamin E. Housden, David S. Milner, Thomas A. Richards
Software Mentions: 2
Published: over 5 years ago
10.1098/rsos.210163
Past thermal conditions affect hunting behaviour in larval antlions
Cited by: 7
Author(s): Krzysztof Miler, Marcin Czarnołęski
Software Mentions: 2
Published: about 5 years ago
10.1186/1742-4690-10-160
Transcriptional profiling reveals molecular signatures associated with HIV permissiveness in Th1Th17 cells and identifies Peroxisome Proliferator-Activated Receptor Gammaas an intrinsic negative regulator of viral replication
Cited by: 44
Author(s): Annie Bernier, Aurélie Cleret-Buhot, Yuwei Zhang, Jean-Philippe Goulet, Patricia Monteiro, Annie Gosselin, Sandrina DaFonseca, Vanessa Sue Wacleche, Mohammad Ali Jenabian, Jean Pierre Routy, Cécile Tremblay, Petronela Ancuța
Software Mentions: 2
Published: over 12 years ago
10.1186/s12977-019-0500-3
HTLV-1 contains a high CG dinucleotide content and is susceptible to the host antiviral protein ZAP
Cited by: 18
Author(s): Paola Miyazato, Misaki Matsuo, Benjy J.Y. Tan, Michiyo Tokunaga, Hiroo Katsuya, Saiful Islam, Jumpei Ito, Yuji Murakawa, Yorifumi Satou
Software Mentions: 2
Published: over 6 years ago
10.1590/1518-8345.2601.3031
Predictors of well-being and quality of life in men who underwent radical prostatectomy: longitudinal study
Cited by: 5
Author(s): Adilson Edson Romanzini, M. Graça Pereira, Caroline Guilherme, Adauto José Cologna, Emı́lia Campos de Carvalho
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12284-021-00459-y
Genomics Analyses Reveal Unique Classification, Population Structure and Novel Allele of Neo-Tetraploid Rice
Cited by: 12
Author(s): Hang Yu, Qihang Li, Yudi Li, Haijun Yang, Zengjun Lu, Jinwen Wu, Zemin Zhang, Muhammad Qasim Shahid, Xiangdong Liu
Software Mentions: 2
Published: over 5 years ago
10.1186/s12284-021-00462-3
Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project
Cited by: 12
Author(s): Jiaqi Lu, Chunchao Wang, Dan Zeng, Jianmin Li, Xiaorong Shi, Yu Shi, Yongli Zhou
Software Mentions: 2
Published: over 5 years ago
10.1186/s13049-016-0315-3
Prehospital treatment with continuous positive airway pressure in patients with acute respiratory failure: a regional observational study
Cited by: 16
Author(s): Vibe Maria Laden Nielsen, Jacob Madsen, Anette Aasen, Anne Pernille Toft-Petersen, Kenneth Lübcke, Bodil Steen Rasmussen, Erika Frischknecht Christensen
Software Mentions: 2
Published: almost 10 years ago
10.1126/sciadv.aau9253
Most sleep does not serve a vital function: Evidence from <i>Drosophila melanogaster</i>
Cited by: 47
Author(s): Quentin Geissmann, Esteban J. Beckwith, Giorgio F. Gilestro
Software Mentions: 2
Published: over 7 years ago
10.1126/sciadv.abg9614
A flexible multiplexed immunosensor for point-of-care in situ wound monitoring
Cited by: 77
Author(s): Yu-Ji Gao, Dat T. Nguyen, Trifanny Yeo, Su Bin Lim, Wei Xian Tan, Leigh Madden, Lin Jin, Ji Yong Kenan Long, Fazila Aloweni, Yi Jia Angela Liew, Mandy Li Ling Tan, Shin Yuh Ang, D Sivagame, O Maniya, Ibrahim Abdelwahab, Kian Ping Loh, Chia-Hung Chen, David L. Becker, David I. Leavesley, John S. Ho, Chwee Teck Lim
Software Mentions: 2
Published: over 5 years ago
10.1126/sciadv.abg0108
Linking the <i>FTO</i> obesity rs1421085 variant circuitry to cellular, metabolic, and organismal phenotypes in vivo
Cited by: 18
Author(s): Samantha Laber, Sara Forcisi, Liz Bentley, Julia Petzold, Franco Moritz, Kirill S. Smirnov, Loubna Al Sadat, Iain Williamson, Sophie Strobel, Thomas Agnew, Shahana Sengupta, T L Nicol, Harald Grallert, Margit Heier, Julius Honecker, Joffrey Mianné, Lydia Teboul, Rebecca Dumbell, Helen Long, Michelle Simon, Cecilia M. Lindgren, Wendy A. Bickmore, Hans Hauner, Philippe Schmitt‐Kopplin, Melina Claussnitzer, Roger D. Cox
Software Mentions: 2
Published: about 5 years ago
10.1126/sciadv.abg4081
Immune checkpoint inhibitors increase T cell immunity during SARS-CoV-2 infection
Cited by: 26
Author(s): Nader Yatim, Jérémy Boussier, P. Tétu, Nikaïa Smith, Timothée Bruel, Bruno Charbit, Laura Barnabei, Aurélien Corneau, Laetitia Da Meda, Clara Allayous, Barouyr Baroudjian, Majdi Jebali, F. Herms, Ludivine Grzelak, Isabelle Staropoli, Vincent Calmettes, Jérôme Hadjadj, Olivier Peyrony, C. Cassius, Jérôme LeGoff, N. Kramkimel, S. Aractingi, Magnus Fontes, Catherine Blanc, Frédéric Rieux‐Laucat, Olivier Schwartz, Benjamin Terrier, Darragh Duffy, Célèste Lebbe
Software Mentions: 2
Published: about 5 years ago
10.1038/sdata.2018.81
A multi-phenotypic imaging screen to identify bacterial effectors by exogenous expression in a HeLa cell line
Cited by: 3
Author(s): Adam Collins, Alan Huett
Software Mentions: 2
Published: over 8 years ago
10.1038/s41597-020-0368-z
Reference values for resting and post exercise hemodynamic parameters in a 6–18 year old population
Cited by: 1
Author(s): Katalin Havasi, Zoltán Maróti, Andrea Emese Jakab, István Raskó, Tibor Kalmár, Csaba Bereczki
Software Mentions: 2
Published: over 6 years ago
10.1038/s41597-021-00953-4
Transcriptome of rat subcortical white matter and spinal cord after spinal injury and cortical stimulation
Cited by: 0
Author(s): Bethany R. Kondiles, Haichao Wei, Lesley Chaboub, Philip J. Horner, Jia Qian Wu, Steve I. Perlmutter
Software Mentions: 2
Published: about 5 years ago
10.1038/srep07649
Recombination is a key driver of genomic and phenotypic diversity in a Pseudomonas aeruginosa population during cystic fibrosis infection
Cited by: 107
Author(s): Sophie E. Darch, Alan McNally, Freya Harrison, Jukka Corander, Helen L. Barr, Konrad Paszkiewicz, Stephen Holden, Andrew Fogarty, Shanika A. Crusz, Stephen P. Diggle
Software Mentions: 2
Published: over 11 years ago
10.1038/s41598-019-44727-w
Phenotypic plasticity of Escherichia coli upon exposure to physical stress induced by ZnO nanorods
Cited by: 16
Author(s): Kinga Matuła, Łukasz Richter, Marta Janczuk-Richter, Wojciech Nogala, Mikołaj Grzeszkowiak, Barbara Peplińska, Stefan Jurga, Elżbieta Wyroba, Szymon Suski, Henryk Bilski, Adrian Silesian, Hans A.R. Bluyssen, Natalia Derebecka, Joanna Wesoły, Jerzy Łoś, Marcin Łoś, Przemysław Decewicz, Łukasz Dziewit, Jan Paczesny, Robert Hołyst
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-019-45066-6
Association between the pig genome and its gut microbiota composition
Cited by: 54
Author(s): Daniel Crespo-Piazuelo, Lourdes Migura-García, Jordi Estellé, Lourdes Criado-Mesas, Manuel Revilla, Anna Castelló, María Muñoz, Juan García‐Casco, Ana Fernández, María Ballester, Josep María Folch
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-019-45804-w
High-throughput sequencing and analysis of microbial communities in the mangrove swamps along the coast of Beibu Gulf in Guangxi, China
Cited by: 39
Author(s): Bin Gong, Hongming Cao, Chunyan Peng, Vanja Perčulija, Guixiang Tong, Huaiyi Fang, Xinxian Wei, Songying Ouyang
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-019-46904-3
Co-cultivation of the marine sponge Halichondria panicea and its associated microorganisms
Cited by: 16
Author(s): Stephen Knobloch, Ragnar Jóhannsson, V. Marteinsson
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-019-46735-2
AAV GCG-EGFP, a new tool to identify glucagon-secreting α-cells
Cited by: 6
Author(s): Eva Tudurí, Maria M. Glavas, Ali Asadi, Robert K. Baker, Cara Ellis, Galina Soukhatcheva, Marjolaine Philit, Frank K. Huynh, James D. Johnson, C. Bruce Verchere, Timothy J. Kieffer
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-019-48059-7
Alterations in lipid metabolism of spinal cord linked to amyotrophic lateral sclerosis
Cited by: 84
Author(s): Adriano B. Chaves‐Filho, Isabella Fernanda Dantas Pinto, Lucas S. Dantas, André Machado Xavier, Alex Inague, Rodrigo L. Faria, Marisa Helena Gennari de Medeiros, Isaías Glezer, Marcos Yukio Yoshinaga, Sayuri Miyamoto
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-019-48434-4
Analysis of the TCR Repertoire in HIV-Exposed but Uninfected Infants
Cited by: 18
Author(s): Benjamin Gabriel, Carey L. Medin, Jeremiah Alves, Ruth Nduati, Rose Bosire, Dalton Wamalwa, Carey Farquhar, Grace John‐Stewart, Barbara Lohman-Payne
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-019-49051-x
Investigating Effects of Typographic Variables on Webpage Reading Through Eye Movements
Cited by: 6
Author(s): Michele Scaltritti, Aliaksei Miniukovich, Paola Venuti, Remo Job, Antonella De Angeli, Simone Sulpizio
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-49220-y
Plumage iridescence is associated with distinct feather microbiota in a tropical passerine
Cited by: 5
Author(s): Veronika Javůrková, Erik D Enbody, Jakub Kreisinger, Kryštof Chmel, Jakub Mrázek, Jordan Karubian
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-49389-2
A multiplex qPCR approach for detection of pfhrp2 and pfhrp3 gene deletions in multiple strain infections of Plasmodium falciparum
Cited by: 19
Author(s): Tobias Schindler, Anna Deal, Martina Fink, Etienne A Guirou, Kara A Moser, Solomon Mwakasungula, Michael G. Mihayo, Said Jongo, Prosper Chaki, Salim Abdulla, Paulo C. Manrique Valverde, Katherine Torres, José Raso Bijeri, Joana C. Silva, Stephen L. Hoffman, Dionicia Gamboa, Marcel Tanner, Claudia Daubenberger
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-49994-1
Oil exposure alters social group cohesion in fish
Cited by: 26
Author(s): Tiffany Armstrong, Alexis J. Khursigara, Shaun S. Killen, Hannah Fearnley, Kevin J. Parsons, Andrew J. Esbaugh
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-49966-5
The diversity and ecological roles of Penicillium in intertidal zones
Cited by: 25
Author(s): Myung Soo Park, Seung‐Yoon Oh, Jonathan J. Fong, Jos Houbraken, Young Woon Lim
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-49611-1
Mutation profiling of cancer drivers in Brazilian colorectal cancer
Cited by: 23
Author(s): Wellington dos Santos, Thais Sobanski, Ana Carolina de Carvalho, Adriane Feijó Evangelista, Marcus Matsushita, Gustavo Nóriz Berardinelli, Marco Antônio de Oliveira, Rui Manuel Reis, Denise Peixoto Guimarães
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-50344-4
Rice bran supplementation modulates growth, microbiota and metabolome in weaning infants: a clinical trial in Nicaragua and Mali
Cited by: 28
Author(s): Luis Enrique Zambrana, Starin McKeen, Hend Ibrahim, Iman Zarei, Erica C. Borresen, Lassina Doumbia, Abdoulaye Boré, Alima Cissoko, Seydou Douyon, Karim Koné, J García Pérez, Claudia Pérez, Ann Hess, Zaid Abdo, Lansana Sangaré, Ababacar Maïga, Sylvia Becker‐Dreps, Lijuan Yuan, Ousmane Koïta, Samuel Vílchez, Elizabeth P. Ryan
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-50575-5
Changes in the microsomal proteome of tomato fruit during ripening
Cited by: 17
Author(s): Daniela Pontiggia, Francesco Spinelli, Claudia Fabbri, Valerio Licursi, Rodolfo Negri, Giulia De Lorenzo, Benedetta Mattei
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-50529-x
Estimation of nephron number in living humans by combining unenhanced computed tomography with biopsy-based stereology
Cited by: 20
Author(s): Takaya Sasaki, Nobuyuki Tsuboi, Yusuke Okabayashi, Kotaro Haruhara, Go Kanzaki, Kentaro Koike, Adam Kobayashi, Izumi Yamamoto, Sho Takahashi, Toshiharu Ninomiya, Akira Shimizu, Andrew D. Rule, John F. Bertram, Takashi Yokoo
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-50959-7
RNA sequencing for ligature induced periodontitis in mice revealed important role of S100A8 and S100A9 for periodontal destruction
Cited by: 18
Author(s): Shogo Maekawa, Satoru Onizuka, Seiji Katagiri, Masahiro Hatasa, Yujin Ohsugi, Naoki Sasaki, Kouichi Watanabe, Anri Ohtsu, Rina Komazaki, Kohei Ogura, Tohru Miyoshi‐Akiyama, Takanori Iwata, Hiroshi Nitta, Yuichi Izumi
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-50521-5
Organic mulches reduce crop attack by sweetpotato weevil (Cylas formicarius)
Cited by: 5
Author(s): Mudassir Rehman, Jian Liu, Anne C. Johnson, Taiwo Esther Dada, Geoff M. Gurr
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-51485-2
Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain
Cited by: 10
Author(s): Ishara Perera, Ayaka Fukushima, Tatsuki Akabane, Genki Horiguchi, Saman Seneweera, Naoki Hirotsu
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-51834-1
Scaling the interactive effects of attractive and repellent odours for insect search behaviour
Cited by: 13
Author(s): Thomas A. Verschut, Mikael A. Carlsson, Peter A. Hambäck
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-52368-2
Microbial communities and soil chemical features associated with commercial production of the medicinal mushroom Ganoderma lingzhi in soil
Cited by: 7
Author(s): Kan Liao, Pu-Dong Li, Jianping Xu, Qiushuang Wang, Liangliang Wang, Hui-Ping Wen
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-52585-9
A Frailty Index based on clinical data to quantify mortality risk in dogs
Cited by: 27
Author(s): Tommaso Banzato, Giovanni Franzo, Roberta Di Maggio, Elisa Nicoletto, Silvia Burti, Matteo Cesari, Marco Canevelli
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-53362-4
Steroid hormones in hair reveal sexual maturity and competition in wild house mice (Mus musculus domesticus)
Cited by: 16
Author(s): Esther H.D. Carlitz, Jan‐Niklas Runge, Barbara König, Lennart Winkler, Clemens Kirschbaum, Wei Gao, Anna K. Lindholm
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-53563-x
The Prognostic Significance of PDE7B in Cytogenetically Normal Acute Myeloid Leukemia
Cited by: 10
Author(s): Lu Cao, Weilong Zhang, Xiaoni Liu, Ping Yang, Jing Wang, Kai Hu, Xiuru Zhang, Weiyou Liu, Xue He, Hongmei Jing, Xiaoliang Yuan
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-019-54282-z
A stroma-corrected ZEB1 transcriptional signature is inversely associated with antitumor immune activity in breast cancer
Cited by: 17
Author(s): Christoph Block, Gregory Dyson, Ion J. Campeanu, Donovan Watza, Manohar Ratnam, Guojun Wu
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-54819-2
The consequences of Brugia malayi infection on the flight and energy resources of Aedes aegypti mosquitoes
Cited by: 8
Author(s): Alastair G. T. Somerville, Katherine Gleave, Christopher M. Jones, Lisa J. Reimer
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-55344-y
West Asian sources of the Eurasian component in Ethiopians: a reassessment
Cited by: 13
Author(s): Ludovica Molinaro, Francesco Montinaro, Burak Yelmen, Davide Marnetto, Doron M. Behar, Toomas Kivisild, Luca Pagani
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-55843-y
Simultaneous detection and comprehensive analysis of HPV and microbiome status of a cervical liquid-based cytology sample using Nanopore MinION sequencing
Cited by: 18
Author(s): Lili Quan, Ruyi Dong, Wenjuan Yang, Lanyou Chen, Jidong Lang, Jia Liu, Yu Song, Shuiqing Ma, Jialiang Yang, Weiwei Wang, Bo Meng, Geng Tian
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-55778-4
Systematic Modification of Zingerone Reveals Structural Requirements for Attraction of Jarvis’s Fruit Fly
Cited by: 7
Author(s): Benjamin L. Hanssen, Soo J. Park, Jane E Royer, Joanne F. Jamie, Phillip W. Taylor, Ian M. Jamie
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-55648-z
Genome-wide analysis of fatty acid desaturase genes in rice (Oryza sativa L.)
Cited by: 22
Author(s): E Zhiguo, Chen Chen, Jinyu Yang, Hanhua Tong, Tingting Li, Lei Wang, Hongqi Chen
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-020-73706-9
MicroRNA dynamics during hibernation of the Australian central bearded dragon (Pogona vitticeps)
Cited by: 3
Author(s): Alexander Capraro, Denis O’Meally, Shafagh A. Waters, Hardip R. Patel, Arthur Georges, Paul D. Waters
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-75591-8
Variation of rhizosphere bacterial community diversity in the desert ephemeral plant Ferula sinkiangensis across environmental gradients
Cited by: 3
Author(s): Tao Zhang, Zhongke Wang, Xinhua Lv, Hanli Dang, Zhuang Li
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-75437-3
The Fuchs corneal dystrophy-associated CTG repeat expansion in the TCF4 gene affects transcription from its alternative promoters
Cited by: 9
Author(s): Alex Sirp, K. Costa Morais Leite, Jürgen Tuvikene, Kaja Nurm, Mari Sepp, Tõnis Timmusk
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-75759-2
Proteomics reveals the preliminary physiological states of the spotted seal (Phoca largha) pups
Cited by: 5
Author(s): Jing Tian, Jing Du, Jingfeng Han, Xiangbo Bao, Xinran Song, Zengkui Lu
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-75990-x
Plasmopara viticola infection affects mineral elements allocation and distribution in Vitis vinifera leaves
Cited by: 17
Author(s): Stefano Cesco, Anna Tolotti, Stefano Nadalini, Stefano Rizzi, Fabio Valentinuzzi, Tanja Mimmo, Carlo Porfido, Ignazio Allegretta, O. Giovannini, Michele Perazzolli, G. Cipriáni, Roberto Terzano, I. Pertot, Youry Pii
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-76085-3
Phenotype prediction and characterization of 25 pharmacogenes in Thais from whole genome sequencing for clinical implementation
Cited by: 11
Author(s): John Mauleekoonphairoj, Montri Chamnanphon, Apichai Khongphatthanayothin, Boosamas Sutjaporn, Pharawee Wandee, Yong Poovorawan, Koonlawee Nademanee, Monnat Pongpanich, Pajaree Chariyavilaskul
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-76019-z
On the correlation between material-induced cell shape and phenotypical response of human mesenchymal stem cells
Cited by: 16
Author(s): Aliaksei Vasilevich, Steven Vermeulen, Marloes M. J. Kamphuis, Nadia Roumans, Said Eroumé, Dennie G. A. J. Hebels, Jeroen van de Peppel, Rika Reihs, Nick R. M. Beijer, Aurélie Carlier, Anne E. Carpenter, Shantanu Singh, Jan de Boer
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-76822-8
Grazing pressure-induced shift in planktonic bacterial communities with the dominance of acIII-A1 actinobacterial lineage in soda pans
Cited by: 11
Author(s): Attila Szabó, Kristóf Korponai, Boglárka Somogyi, Balázs Vajna, Lajos Vörös, Zsófia Horváth, Emil Boros, Nóra Szabó-Tugyi, Károly Màrialigeti, Tamás Felföldi
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-75352-7
Machine learning to predict early TNF inhibitor users in patients with ankylosing spondylitis
Cited by: 6
Author(s): Seulkee Lee, Young‐Gyu Eun, Hyungjin Kim, Hoon‐Suk Cha, Eun‐Mi Koh, Jaejoon Lee
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-77179-8
Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments
Cited by: 15
Author(s): Inès Barrenechea Angeles, Franck Lejzerowicz, Tristan Cordier, Janin Scheplitz, Michal Kučera, Daniel Ariztegui, Jan Pawłowski, Raphaël Morard
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-76873-x
Deeper waters are changing less consistently than surface waters in a global analysis of 102 lakes
Cited by: 51
Author(s): Rachel M. Pilla, Craig E. Williamson, Б. В. Адамович, Rita Adrian, Orlane Anneville, Sudeep Chandra, William Colom-Montero, Shawn P. Devlin, Margaret Dix, Martin T. Dokulil, Evelyn E. Gaiser, Scott F. Girdner, K. David Hambright, David P. Hamilton, Karl E. Havens, Dag O. Hessen, Scott N. Higgins, Timo Huttula, Hannu Huuskonen, Peter D. F. Isles, Klaus Joehnk, Ian D. Jones, Wendel Keller, Lesley B. Knoll, Johanna Korhonen, Benjamin M. Kraemer, Peter R. Leavitt, Fabio Lepori, Martin Luger, Stephen C. Maberly, John M. Mélack, Stephanie J. Melles, Dörthe C. Müller-Navarra, Don Pierson, Helen V. Pislegina, Pierre Denis Plisnier, David C. Richardson, Alon Rimmer, Michela Rogora, James A. Rusak, Steven Sadro, Nico Salmaso, Jasmine E. Saros, Émilie Saulnier‐Talbot, Daniel E. Schindler, Martin Schmid, Svetlana V. Shimaraeva, Eugene A. Silow, Lewis Sitoki, Rubén Sommaruga, Dietmar Straile, Kristin E. Strock, Wim Thiery, Maxim A. Timofeyev, Piet Verburg, Rolf D. Vinebrooke, Gesa A. Weyhenmeyer, Egor Zadereev
Software Mentions: 2
Published: over 5 years ago