cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s40168-019-0683-9

Alterations in the gut microbiome and metabolism with coronary artery disease severity
Cited by: 179
Author(s): Honghong Liu, Xi Chen, Xiaomin Hu, Haitao Niu, Ran Tian, Hui Wang, Haiyu Pang, Lingjuan Jiang, Bin Qiu, Xiuting Chen, Yang Zhang, Yinglong Ma, Si Tang, Hanyu Li, Siqin Feng, Shuyang Zhang, Chenhong Zhang
Software Mentions: 2
Published: about 7 years ago

10.1001/jamanetworkopen.2019.1313

Comparison of a Potential Hospital Quality Metric With Existing Metrics for Surgical Quality–Associated Readmission
Cited by: 18
Author(s): Laura A. Graham, Hillary J. Mull, Todd H. Wagner, Melanie S. Morris, Amy K. Rosen, Joshua Richman, Jeff Whittle, Edith Burns, Laurel A. Copeland, Kamal M.F. Itani, Mary T. Hawn
Software Mentions: 2
Published: about 7 years ago

10.1001/jamanetworkopen.2019.7216

Association of US Medical Marijuana Laws With Nonmedical Prescription Opioid Use and Prescription Opioid Use Disorder
Cited by: 36
Author(s): Luís Segura, Christine Mauro, Natalie S. Levy, Nicole Khauli, Morgan M. Philbin, Pia M. Mauro, Sílvia S. Martins
Software Mentions: 2
Published: almost 7 years ago

10.1001/jamanetworkopen.2019.14149

Epidemiologic Trends in Clostridioides difficile Infections in a Regional Community Hospital Network
Cited by: 22
Author(s): Nicholas Turner, Steven C. Grambow, Christopher W. Woods, Vance G. Fowler, Rebekah W. Moehring, Deverick J. Anderson, Sarah S. Lewis
Software Mentions: 2
Published: over 6 years ago

10.1001/jamanetworkopen.2020.0512

Assessment of Electronic Health Record Search Patterns and Practices by Practitioners in a Large Integrated Health Care System
Cited by: 17
Author(s): Halley Ruppel, Aashish Bhardwaj, R. Manickam, Julia Adler‐Milstein, Marc Flagg, Manuel A. Ballesca, Jean‐Louis Vincent
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.589370

Wfs1 and Related Molecules as Key Candidate Genes in the Hippocampus of Depression
Cited by: 7
Author(s): Jing Yang, Chaoqin Chen, Xiaoyuan Jin, Lu Liu, Jiajia Lin, Xianhui Kang, Shengmei Zhu
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.00082

Aneuploidy and Ethanol Tolerance in Saccharomyces cerevisiae
Cited by: 54
Author(s): Miguel Morard, Laura Graciela Chávez Macías, Ana Cristina Adam, María Lairón-Peris, Roberto Pérez‐Torrado, Christina Toft, Eladio Barrio
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2017.00068

Signatures of Selection for Environmental Adaptation and Zebu × Taurine Hybrid Fitness in East African Shorthorn Zebu
Cited by: 63
Author(s): Hussain Bahbahani, Abdulfatai Tijjani, Christopher Mukasa, David Wragg, Faisal Almathen, Oyekanmi Nash, G. N. Akpa, Mary Mbole-Kariuki, Sunir Malla, Mark E. J. Woolhouse, Tad S. Sonstegard, C. P. van Tassell, Martin Blythe, Heather J. Huson, Olivier Hanotte
Software Mentions: 2
Published: about 9 years ago

10.3389/fgene.2020.583785

Transcriptomic Study for Identification of Major Nitrogen Stress Responsive Genes in Australian Bread Wheat Cultivars
Cited by: 28
Author(s): Nigarin Sultana, Shahidul Islam, Angéla Juhász, Rongchang Yang, Maoyun She, Zaid Alhabbar, Jingjuan Zhang, Wujun Ma
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.615340

Functional Network of the Long Non-coding RNA Growth Arrest-Specific Transcript 5 and Its Interacting Proteins in Senescence
Cited by: 3
Author(s): Siqi Wang, Shengwei Ke, Yueming Wu, Duo Zhang, Baowei Liu, Yaohui He, Wen Li, Huawei Mu, Xiaoyuan Song
Software Mentions: 2
Published: over 5 years ago

10.1002/jbm4.10372

Potential Biomarkers of the Turnover, Mineralization, and Volume Classification: Results Using <scp>NMR</scp> Metabolomics in Hemodialysis Patients
Cited by: 2
Author(s): Aline Lourenço Baptista, Kallyandra Padilha, Pamella Araujo Malagrino, Gabriela Venturini, Ana Cm Zeri, Luciene M. dos Reis, Janaina S. Martins, Vanda Jorgetti, Alexandre C. Pereira, Silvia Maria de Oliveira Titan, Rosa M.A. Moysés
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2020.602922

Identification of Potential Diagnostic and Prognostic Biomarkers for Colorectal Cancer Based on GEO and TCGA Databases
Cited by: 6
Author(s): Zhenjiang Wang, Mingyi Guo, Xinbo Ai, Jiaming Cheng, Zaiwei Huang, Xiaobin Li, Yuping Chen
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.121144

The TAB1-p38α complex aggravates myocardial injury and can be targeted by small molecules
Cited by: 15
Author(s): G.F. De Nicola, Rekha Bassi, C. Blake Nichols, Mariana Fernández-Caggiano, Pelin Golforoush, Dibesh Thapa, Rosaleen J. Anderson, Eva Denise Martin, Sharwari Verma, Jens Kleinjung, Adam Laing, Jonathan P. Hutchinson, Philip Eaton, James E. Clark, Michael Marber
Software Mentions: 2
Published: almost 8 years ago

10.1186/s40168-018-0493-5

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms
Cited by: 60
Author(s): Brandon Brooks, Matthew R. Olm, Brian Firek, Robyn Baker, David Geller-McGrath, Sophia R. Reimer, Karina Ruth Soenjoyo, Jennifer S. Yip, Dylan Dahan, Brian C. Thomas, Michael J. Morowitz, Jillian F. Banfield
Software Mentions: 2
Published: about 8 years ago

10.3389/fendo.2020.00135

Size and Shape of Associations of OGTT as Well as Mediating Effects on Adverse Pregnancy Outcomes Among Women With Gestational Diabetes Mellitus: Population-Based Study From Southern Han Chinese
Cited by: 8
Author(s): Zixing Zhou, Gengdong Chen, Dazhi Fan, Jiaming Rao, Pengsheng Li, Shuzhen Wu, Dongxin Lin, Huiting Ma, Shaoxin Ye, Huishan Zhang, Xiuyin Shen, Yingchun Wan, Xinrong Luo, Dongmei Suo, Xiaoling Guo, Zhengping Liu
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-018-0441-4

Gut-dependent microbial translocation induces inflammation and cardiovascular events after ST-elevation myocardial infarction
Cited by: 167
Author(s): Xin Zhou, Jing Li, Junli Guo, Bin Geng, Wenjie Ji, Qian Zhao, Jinxin Li, Xinlin Liu, Junxiang Liu, Zhao-Zeng Guo, Wei Cai, Yun Ma, Dong Ren, Jun Miao, Shaobo Chen, Zhuoli Zhang, Junru Chen, Jiuchang Zhong, Wenbin Liu, Ming‐Hui Zou, Yuming Li, Jun Cai
Software Mentions: 2
Published: about 8 years ago

10.1098/rsos.160712

Thermally moderated firefly activity is delayed by precipitation extremes
Cited by: 9
Author(s): Sara L. Hermann, Saisi Xue, Logan Rowe, Elizabeth Davidson-Lowe, Andrew C. Myers, Bahodir Eshchanov, Christie A. Bahlai
Software Mentions: 2
Published: over 9 years ago

10.3389/fendo.2021.708838

Ovariectomy Impaired Hepatic Glucose and Lipid Homeostasis and Altered the Gut Microbiota in Mice With Different Diets
Cited by: 14
Author(s): Zili Lei, Huijuan Wu, Yanhong Yang, Qing Hu, Yuting Lei, Wanwan Liu, Ya Nie, Lan Yang, Xueying Zhang, Changyuan Yang, Ting Lin, Fengxue Tong, Jiamin Zhu, Jiao Guo
Software Mentions: 2
Published: almost 5 years ago

10.3389/fendo.2020.566673

Maternal Obesity Affects the Glucose-Insulin Axis During the First Trimester of Human Pregnancy
Cited by: 17
Author(s): Julia Bandres‐Meriz, Anna M. Dieberger, Denise Hoch, Caroline Pöchlauer, Martina Bachbauer, Andreas Glasner, Tobias Niedrist, Mireille N. M. van Poppel, Gernot Desoyé
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-018-0453-0

A comparison of methods used to unveil the genetic and metabolic pool in the built environment
Cited by: 18
Author(s): C. Gómez-Silván, Marcus H. Y. Leung, Katherine Grue, Randeep Kaur, Xinzhao Tong, Patrick K. H. Lee, Gary L. Andersen
Software Mentions: 2
Published: about 8 years ago

10.1186/s40168-019-0755-x

Microbiota analysis optimization for human bronchoalveolar lavage fluid
Cited by: 25
Author(s): Pierre H. H. Schneeberger, Janice Prescod, Liran Levy, David Hwang, T. Martinu, Bryan Coburn
Software Mentions: 2
Published: over 6 years ago

10.3389/fendo.2021.727188

Diabetes in Patients With Heart Failure With Reduced Ejection Fraction During Hospitalization: A Retrospective Observational Study
Cited by: 6
Author(s): Yiling Zhou, Miye Wang, Si Wang, Nan Li, Shengzhao Zhang, Siqi Tang, Qingyang Shi, Yuliang Zhao, Jingwen Li, Yuping Zeng, Huan Song, Haoming Tian, Shuangqing Li
Software Mentions: 2
Published: almost 5 years ago

10.3389/fendo.2020.603021

Gestational Diabetes Is Uniquely Associated With Altered Early Seeding of the Infant Gut Microbiota
Cited by: 36
Author(s): Taylor K. Soderborg, Charles M. Carpenter, Rachel C. Janssen, Tiffany L. Weir, Charles E. Robertson, Diana Ir, Bridget E. Young, Nancy F. Krebs, Teri L. Hernandez, Linda A. Barbour, Daniel N. Frank, Miranda Kroehl, Jacob E. Friedman
Software Mentions: 2
Published: over 5 years ago

10.1098/rsos.172212

Leishmania naiffi and Leishmania guyanensis reference genomes highlight genome structure and gene evolution in the Viannia subgenus
Cited by: 23
Author(s): Simone Coughlan, Alysha S. Taylor, Eoghan Feane, Mandy Sanders, Gabriele Schönian, James A. Cotton, Tim Downing
Software Mentions: 2
Published: about 8 years ago

10.3389/fendo.2021.652807

The Arachidonic Acid Metabolism Mechanism Based on UPLC-MS/MS Metabolomics in Recurrent Spontaneous Abortion Rats
Cited by: 8
Author(s): Meihe Li, Huiling Yang, Min-Hee Kang, Peng An, Xiumei Wu, Huimin Dang, Xin Xu
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.61611

Temperature-dependent fasciation mutants provide a link between mitochondrial RNA processing and lateral root morphogenesis
Cited by: 4
Author(s): Kurataka Otsuka, Akihito Mamiya, Mineko Konishi, Mamoru Nozaki, Atsuko Kinoshita, Hiroaki Tamaki, Masaki Arita, Masato Saito, Keijiro Yamamoto, Takushi Hachiya, Ko Noguchi, Takashi Ueda, Yusuke Yagi, Takehito Kobayashi, Takahiro Nakamura, Yasushi Sato, Takashi Hirayama, Masaru Sugiyama
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-017-0265-7

The effects of inhaled aztreonam on the cystic fibrosis lung microbiome
Cited by: 51
Author(s): Alya Heirali, Matthew L. Workentine, Nicole Acosta, Ali Poonja, Douglas G. Storey, Ranjani Somayaji, Harvey Rabin, Fiona Whelan, Michael G. Surette, Michael D. Parkins
Software Mentions: 2
Published: about 9 years ago

10.1098/rsos.181730

Plastic multicellular development of Myxococcus xanthus : genotype–environment interactions in a physical gradient
Cited by: 16
Author(s): Natsuko Rivera‐Yoshida, Alejandro V. Arzola, Juan A. Arias Del Angel, Alessio Franci, Michael Travisano, Ana E. Escalante, Mariana Benítez
Software Mentions: 2
Published: over 7 years ago

10.3389/fchem.2020.595143

Natural Variation of Lignocellulosic Components in Miscanthus Biomass in China
Cited by: 20
Author(s): Pingping Xu, Senan Cheng, Yanbin Han, Dongbo Zhao, Hongfei Li, Yancui Wang, Guobin Zhang, Cuixia Chen
Software Mentions: 2
Published: over 5 years ago

10.1098/rsos.190090

Larval foraging decisions in competitive heterogeneous environments accommodate diets that support egg-to-adult development in a polyphagous fly
Cited by: 10
Author(s): Juliano Morimoto, Shabnam Tarahi Tabrizi, Ida Lundbäck, Bishwo P. Mainali, Phillip W. Taylor, Fleur Ponton
Software Mentions: 2
Published: about 7 years ago

10.1128/MRA.00479-20

Nearly Complete Genome Sequence of Brugia pahangi FR3
Cited by: 4
Author(s): John Mattick, Silvia Libro, Benjamin C. Sparklin, Matthew Chung, Robin E. Bromley, Suvarna Nadendla, Xüna Zhao, Sandra Ott, Lisa Sadzewicz, Luke J. Tallon, Michelle L. Michalski, Jeremy M. Foster, Julie C. Dunning Hotopp
Software Mentions: 2
Published: almost 6 years ago

10.3389/fncel.2020.00160

Small-Medium Extracellular Vesicles and Their miRNA Cargo in Retinal Health and Degeneration: Mediators of Homeostasis, and Vehicles for Targeted Gene Therapy
Cited by: 34
Author(s): Yvette Wooff, Adrian V. Cioanca, Joshua Chu-Tan, Riemke Aggio-Bruce, Ulrike Schümann, Riccardo Natoli
Software Mentions: 2
Published: almost 6 years ago

10.3389/fcimb.2021.560201

Chronic Intermittent Hypoxia Participates in the Pathogenesis of Atherosclerosis and Perturbs the Formation of Intestinal Microbiota
Cited by: 18
Author(s): Chaowei Hu, Pan Wang, Yunyun Yang, Juan Li, Xiaolu Jiao, Huahui Yu, Yongxiang Wei, Jing Li, Yanwen Qin
Software Mentions: 2
Published: almost 5 years ago

10.1128/MRA.00273-21

Rengasvirus, a Circular Replication-Associated Protein-Encoding Single-Stranded DNA Virus-Related Genome That Is a Common Contaminant in Metagenomic Data
Cited by: 1
Author(s): Emma L. Keeler, Louis J. Taylor, Arwa Abbas, Ronald G. Collman, Frederic D. Bushman
Software Mentions: 2
Published: about 5 years ago

10.3389/fcimb.2020.00124

Saliva Microbiome Changes in Patients With Periodontitis With and Without Chronic Obstructive Pulmonary Disease
Cited by: 14
Author(s): Lin Ma, Xuefen Li, Jitian Wang, Cheng Cheng, Tianyi Zhang, Xiaozhe Han, Yiqing Song, Zuomin Wang, Songlin Wang
Software Mentions: 2
Published: about 6 years ago

10.3389/fcimb.2020.577485

Comparison of Blood Bacterial Communities in Periodontal Health and Periodontal Disease
Cited by: 32
Author(s): David C. Emery, Tanya L. Cerajewska, Joon Seong, Malcolm Davies, Alex Paterson, Shelley J Allen, Nicola West
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2021.664247

Human Cytomegalovirus Genome Diversity in Longitudinally Collected Breast Milk Samples
Cited by: 9
Author(s): Jasper Götting, Katrin Lazar, Nicolás M. Suárez, Lars Steinbrück, Tabea Rabe, Rangmar Goelz, Thomas F. Schulz, Andrew J. Davison, Klaus Hamprecht, Tina Ganzenmueller
Software Mentions: 2
Published: about 5 years ago

10.3389/fcimb.2021.701278

SARS-CoV-2 Infects Endothelial Cells In Vivo and In Vitro
Cited by: 83
Author(s): Fengming Liu, Kun Han, Robert V Blair, Kornelia Kenst, Zhongnan Qin, Berin Upcin, Philipp Wörsdörfer, Cecily C. Midkiff, Joseph C. Mudd, Elizaveta Belyaeva, Nicholas S Milligan, Tyler D Rorison, Nicole Wagner, Jochen Bodem, Lars Dölken, Bertal H. Aktas, Richard S. Vander Heide, Xiao‐Ming Yin, Jay K. Kolls, Chad J. Roy, Jay Rappaport, Süleyman Ergün, Xuebin Qin
Software Mentions: 2
Published: almost 5 years ago

10.1098/rsos.210140

Characterization of the RNA-interference pathway as a tool for reverse genetic analysis in the nascent phototrophic endosymbiosis, Paramecium bursaria
Cited by: 5
Author(s): Benjamin H. Jenkins, Finlay Maguire, Guy Leonard, Joshua D. Eaton, Steven West, Benjamin E. Housden, David S. Milner, Thomas A. Richards
Software Mentions: 2
Published: about 5 years ago

10.1136/bmjopen-2016-012471

Individual surgeon mortality rates: can outliers be detected? A national utility analysis
Cited by: 7
Author(s): Ewen M Harrison, Thomas M Drake, Stephen O’Neill, Catherine Shaw, O. James Garden, Stephen J. Wigmore
Software Mentions: 2
Published: over 9 years ago

10.3389/fcimb.2021.709893

Elevated Neopterin Levels Predict Fatal Outcome in SARS-CoV-2-Infected Patients
Cited by: 13
Author(s): Manon Chauvin, Martin Larsen, Bibiana Quirant, Paul Quentric, Karim Dorgham, Luca Royer, Hélène Vallet, Amélie Guihot, Béhazine Combadière, Christophe Combadière, Jaume Barallat, Julien Mayaux, Charles‐Édouard Luyt, Alexis Mathian, Zahir Amoura, Jacques Boddaert, Fernándo Arméstar, Guy Gorochov, Eva Martı́nez-Cáceres, Delphine Sauce
Software Mentions: 2
Published: almost 5 years ago

10.1098/rsos.210163

Past thermal conditions affect hunting behaviour in larval antlions
Cited by: 7
Author(s): Krzysztof Miler, Marcin Czarnołęski
Software Mentions: 2
Published: about 5 years ago

10.3389/fcimb.2015.00023

A systematic review and meta-analysis of the epidemiology of pathogenic Escherichia coli of calves and the role of calves as reservoirs for human pathogenic E. coli
Cited by: 95
Author(s): Rafał Kolenda, Michał Burdukiewicz, Peter Schierack
Software Mentions: 2
Published: over 11 years ago

10.3389/fcimb.2021.633817

Molecular Epidemiology and Clone Transmission of Carbapenem-Resistant Acinetobacter baumannii in ICU Rooms
Cited by: 14
Author(s): Xiufeng Zhang, Fangping Li, Furqan Awan, Hongye Jiang, Zhenling Zeng, Weibiao Lv
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2021.665226

Metagenomic Next-Generation Sequencing of Bloodstream Microbial Cell-Free Nucleic Acid in Children With Suspected Sepsis in Pediatric Intensive Care Unit
Cited by: 19
Author(s): Gangfeng Yan, Jing Liu, Wei-Ming Chen, Chen Yang, Ye Cheng, Jinhao Tao, Xiaoyun Cai, Yang Zhou, Yixue Wang, Mingbang Wang, Guoping Li
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcimb.2020.00117

Comparative Metagenome-Assembled Genome Analysis of “Candidatus Lachnocurva vaginae”, Formerly Known as Bacterial Vaginosis-Associated Bacterium−1 (BVAB1)
Cited by: 44
Author(s): Johanna B. Holm, Michael France, Bing Ma, Elias McComb, Courtney K. Robinson, Aditya Mehta, Luke J. Tallon, Rebecca M. Brotman, Jacques Ravel
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms22168789

TF–RBP–AS Triplet Analysis Reveals the Mechanisms of Aberrant Alternative Splicing Events in Kidney Cancer: Implications for Their Possible Clinical Use as Prognostic and Therapeutic Biomarkers
Cited by: 5
Author(s): Meng Xiao He, Fuyan Hu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcimb.2021.695515

Alteration in Oral Microbiome Among Men Who Have Sex With Men With Acute and Chronic HIV Infection on Antiretroviral Therapy
Cited by: 9
Author(s): Shuang Li, Junping Zhu, Bin Su, Huimin Wei, Fei Chen, Hongshan Liu, Jiaqi Wei, Xiaodong Yang, Qiuyue Zhang, Wei Xia, Hao Wu, Qiushui He, Tong Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcell.2020.00289

H3K4me1 Distribution Predicts Transcription State and Poising at Promoters
Cited by: 55
Author(s): Sunhee Bae, Bluma J. Lesch
Software Mentions: 2
Published: about 6 years ago

10.1002/mbo3.726

Characterization of the bacterial community composition in water of drinking water production and distribution systems in Flanders, Belgium
Cited by: 15
Author(s): Ado Van Assche, Sam Crauwels, Jos De Brabanter, Kris Willems, Bart Lievens
Software Mentions: 2
Published: over 7 years ago

10.3389/fcell.2021.676364

Role of RNA N6-Methyladenosine Modification in Male Infertility and Genital System Tumors
Cited by: 10
Author(s): Shuai Liu, Yongfeng Lao, Yanan Wang, Rongxin Li, Xuefeng Fang, Yunchang Wang, Xiaolong Gao, Zhong Dong
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2020.590898

T-Box Transcription Factor 22 Is an Immune Microenvironment-Related Biomarker Associated With the BRAFV600E Mutation in Papillary Thyroid Carcinoma
Cited by: 3
Author(s): Xubin Dong, Jingjing Song, Jing Hu, Cheng Zheng, Xiaohua Zhang, Haiguang Liu
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/9818349

Orlistat-Induced Gut Microbiota Modification in Obese Mice
Cited by: 22
Author(s): Jing Ke, Yingli An, Bin Cao, Jianan Lang, Nannan Wu, Dong Zhao
Software Mentions: 2
Published: about 6 years ago

10.1007/s10680-017-9458-9

The Length of Working Life in Spain: Levels, Recent Trends, and the Impact of the Financial Crisis
Cited by: 22
Author(s): Christian Dudel, María Andrée López Gómez, Fernando G. Benavides, Mikko Myrskylä
Software Mentions: 2
Published: over 8 years ago

10.1186/1742-4690-10-160

Transcriptional profiling reveals molecular signatures associated with HIV permissiveness in Th1Th17 cells and identifies Peroxisome Proliferator-Activated Receptor Gammaas an intrinsic negative regulator of viral replication
Cited by: 44
Author(s): Annie Bernier, Aurélie Cleret-Buhot, Yuwei Zhang, Jean-Philippe Goulet, Patricia Monteiro, Annie Gosselin, Sandrina DaFonseca, Vanessa Sue Wacleche, Mohammad Ali Jenabian, Jean Pierre Routy, Cécile Tremblay, Petronela Ancuța
Software Mentions: 2
Published: over 12 years ago

10.1002/mbo3.436

Maintaining stability of the rumen ecosystem is associated with changes of microbial composition and epithelial TLR signaling
Cited by: 13
Author(s): Hong Shen, Zhan Chen, Zongzhuan Shen, Zhongyan Lu
Software Mentions: 2
Published: over 9 years ago

10.1186/s12977-019-0500-3

HTLV-1 contains a high CG dinucleotide content and is susceptible to the host antiviral protein ZAP
Cited by: 18
Author(s): Paola Miyazato, Misaki Matsuo, Benjy J.Y. Tan, Michiyo Tokunaga, Hiroo Katsuya, Saiful Islam, Jumpei Ito, Yuji Murakawa, Yorifumi Satou
Software Mentions: 2
Published: over 6 years ago

10.1007/s00394-019-02122-1

Lower carbohydrate and higher fat intakes are associated with higher hemoglobin A1c: findings from the UK National Diet and Nutrition Survey 2008–2016
Cited by: 15
Author(s): Chaitong Churuangsuk, Michael E. J. Lean, Emilie Combet
Software Mentions: 2
Published: over 6 years ago

10.1590/1518-8345.2601.3031

Predictors of well-being and quality of life in men who underwent radical prostatectomy: longitudinal study
Cited by: 5
Author(s): Adilson Edson Romanzini, M. Graça Pereira, Caroline Guilherme, Adauto José Cologna, Emı́lia Campos de Carvalho
Software Mentions: 2
Published: almost 8 years ago

10.1111/ejn.15199

White matter microstructure of the neural emotion regulation circuitry in mild traumatic brain injury
Cited by: 3
Author(s): Harm Jan van der Horn, Namrata R. Mangina, Sandra E. Rakers, J G M Kok, Marieke E. Timmerman, Alexander Leemans, Jacoba M. Spikman, Joukje van der Naalt
Software Mentions: 2
Published: about 5 years ago

10.1186/s12284-021-00459-y

Genomics Analyses Reveal Unique Classification, Population Structure and Novel Allele of Neo-Tetraploid Rice
Cited by: 12
Author(s): Hang Yu, Qihang Li, Yudi Li, Haijun Yang, Zengjun Lu, Jinwen Wu, Zemin Zhang, Muhammad Qasim Shahid, Xiangdong Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12284-021-00462-3

Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project
Cited by: 12
Author(s): Jiaqi Lu, Chunchao Wang, Dan Zeng, Jianmin Li, Xiaorong Shi, Yu Shi, Yongli Zhou
Software Mentions: 2
Published: over 5 years ago

10.1186/s40001-021-00481-2

LncRNA NEAT1 promotes nucleus pulposus cell matrix degradation through regulating Nrf2/ARE axis
Cited by: 7
Author(s): Li Cheng, Xiaobo Ma, Chenfei Ni, Jingyan Xu, Y J Xie, Junwei Kan, Xiaoli Wei
Software Mentions: 2
Published: over 5 years ago

10.1186/s40001-021-00535-5

Inherited unbalanced reciprocal translocation with 3q duplication and 5p deletion in a foetus revealed by cell-free foetal DNA (cffDNA) testing: a case report
Cited by: 0
Author(s): Taccyanna Mikulski Ali, Emilia Mateu‐Brull, Nuria Balaguer, Camila Gomes Dantas, Haline Risso Borges, Mariana Quintans Guerra de Oliveira, Lorena Rodrigo, Inmaculada Campos‐Galindo, Roser Navarro, Miguel Milán
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13049-016-0315-3

Prehospital treatment with continuous positive airway pressure in patients with acute respiratory failure: a regional observational study
Cited by: 16
Author(s): Vibe Maria Laden Nielsen, Jacob Madsen, Anette Aasen, Anne Pernille Toft-Petersen, Kenneth Lübcke, Bodil Steen Rasmussen, Erika Frischknecht Christensen
Software Mentions: 2
Published: over 9 years ago

10.1002/eji.202048841

Monocytes promote UV‐induced epidermal carcinogenesis
Cited by: 5
Author(s): Iva Lelios, Sebastian A. Stifter, Virginia Cecconi, Ekaterina Petrova, Mirjam Lutz, Dilay Cansever, Sebastian G. Utz, Burkhard Becher, Maries van den Broek, Melanie Greter
Software Mentions: 2
Published: about 5 years ago

10.1126/sciadv.aau9253

Most sleep does not serve a vital function: Evidence from Drosophila melanogaster
Cited by: 47
Author(s): Quentin Geissmann, Esteban J. Beckwith, Giorgio F. Gilestro
Software Mentions: 2
Published: over 7 years ago

10.1002/mbo3.456

The role of inoculum and reactor configuration for microbial community composition and dynamics in mainstream partial nitritation anammox reactors
Cited by: 28
Author(s): Shelesh Agrawal, Søren Michael Karst, Eva M. Gilbert, Harald Horn, Per Halkjær Nielsen, Susanne Lackner
Software Mentions: 2
Published: over 9 years ago

10.1126/sciadv.abg9614

A flexible multiplexed immunosensor for point-of-care in situ wound monitoring
Cited by: 77
Author(s): Yu-Ji Gao, Dat T. Nguyen, Trifanny Yeo, Su Bin Lim, Wei Xian Tan, Leigh Madden, Lin Jin, Ji Yong Kenan Long, Fazila Aloweni, Yi Jia Angela Liew, Mandy Li Ling Tan, Shin Yuh Ang, D Sivagame, O Maniya, Ibrahim Abdelwahab, Kian Ping Loh, Chia-Hung Chen, David L. Becker, David I. Leavesley, John S. Ho, Chwee Teck Lim
Software Mentions: 2
Published: about 5 years ago

10.1093/ehjci/jex218

Doppler assessment of aortic stenosis: a 25-operator study demonstrating why reading the peak velocity is superior to velocity time integral
Cited by: 16
Author(s): Stefano Sacchi, Niti M. Dhutia, Matthew Shun-Shin, Massoud Zolgharni, Nilesh Sutaria, DP Francis, Graham Cole
Software Mentions: 2
Published: over 8 years ago

10.1126/sciadv.abg0108

Linking the FTO obesity rs1421085 variant circuitry to cellular, metabolic, and organismal phenotypes in vivo
Cited by: 18
Author(s): Samantha Laber, Sara Forcisi, Liz Bentley, Julia Petzold, Franco Moritz, Kirill S. Smirnov, Loubna Al Sadat, Iain Williamson, Sophie Strobel, Thomas Agnew, Shahana Sengupta, T L Nicol, Harald Grallert, Margit Heier, Julius Honecker, Joffrey Mianné, Lydia Teboul, Rebecca Dumbell, Helen Long, Michelle Simon, Cecilia M. Lindgren, Wendy A. Bickmore, Hans Hauner, Philippe Schmitt‐Kopplin, Melina Claussnitzer, Roger D. Cox
Software Mentions: 2
Published: almost 5 years ago

10.1126/sciadv.abg4081

Immune checkpoint inhibitors increase T cell immunity during SARS-CoV-2 infection
Cited by: 26
Author(s): Nader Yatim, Jérémy Boussier, P. Tétu, Nikaïa Smith, Timothée Bruel, Bruno Charbit, Laura Barnabei, Aurélien Corneau, Laetitia Da Meda, Clara Allayous, Barouyr Baroudjian, Majdi Jebali, F. Herms, Ludivine Grzelak, Isabelle Staropoli, Vincent Calmettes, Jérôme Hadjadj, Olivier Peyrony, C. Cassius, Jérôme LeGoff, N. Kramkimel, S. Aractingi, Magnus Fontes, Catherine Blanc, Frédéric Rieux‐Laucat, Olivier Schwartz, Benjamin Terrier, Darragh Duffy, Célèste Lebbe
Software Mentions: 2
Published: almost 5 years ago

10.1038/sdata.2018.81

A multi-phenotypic imaging screen to identify bacterial effectors by exogenous expression in a HeLa cell line
Cited by: 3
Author(s): Adam Collins, Alan Huett
Software Mentions: 2
Published: about 8 years ago

10.1007/s00787-019-01432-3

Toddlers’ diurnal cortisol levels affected by out-of-home, center-based childcare and at-home, guardian-supervised childcare: comparison between different caregiving contexts
Cited by: 10
Author(s): Katja Tervahartiala, Linnéa Karlsson, Juho Pelto, Susanna Kortesluoma, Sirpa Hyttinen, Annarilla Ahtola, Niina Junttila, Hasse Karlsson
Software Mentions: 2
Published: over 6 years ago

10.1186/s13048-019-0578-1

Identification of key biomarkers associated with development and prognosis in patients with ovarian carcinoma: evidence from bioinformatic analysis
Cited by: 21
Author(s): Jiayu Shen, Shuqian Yu, Xiaochun Sun, Miao Yin, Fei Jing, Jianwei Zhou
Software Mentions: 2
Published: over 6 years ago

10.1186/s13072-018-0229-6

The methylome of the marbled crayfish links gene body methylation to stable expression of poorly accessible genes
Cited by: 54
Author(s): Fanny Gatzmann, Cassandra Falckenhayn, Julian Gutekunst, Katharina Hanna, Günter Raddatz, Vitor Coutinho Carneiro, Frank Lyko
Software Mentions: 2
Published: over 7 years ago

10.1038/s41597-020-0368-z

Reference values for resting and post exercise hemodynamic parameters in a 6–18 year old population
Cited by: 1
Author(s): Katalin Havasi, Zoltán Maróti, Andrea Emese Jakab, István Raskó, Tibor Kalmár, Csaba Bereczki
Software Mentions: 2
Published: over 6 years ago

10.1186/s13072-018-0194-0

Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten
Cited by: 34
Author(s): Shalima S. Nair, Phuc-Loi Luu, Wenjia Qu, Madhavi P. Maddugoda, Lily I. Huschtscha, Roger R. Reddel, Georgia Chenevix-Trench, Martina Toso, James G. Kench, Lisa G. Horvath, Vanessa M. Hayes, Phillip D. Stricker, Timothy P. Hughes, Deborah L. White, John E.J. Rasko, Justin Wong, Susan J. Clark
Software Mentions: 2
Published: about 8 years ago

10.1002/mbo3.768

Pressure and temperature effects on deep-sea hydrocarbon-degrading microbial communities in subarctic sediments
Cited by: 17
Author(s): Luis J Perez Calderon, Evangelia Gontikaki, Lloyd D. Potts, Sophie Shaw, Alejandro Gallego, James A. Anderson, Ursula Witte
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms221910329

Nanoparticle-Aided Detection of Colorectal Cancer-Associated Glycoconjugates of Extracellular Vesicles in Human Serum
Cited by: 3
Author(s): Rufus Vinod, Randa Mahran, Erica Routila, Janne Leivo, Kim Pettersson, Kamlesh Gidwani
Software Mentions: 2
Published: over 4 years ago

10.1186/s13072-016-0054-8

Profiling placental and fetal DNA methylation in human neural tube defects
Cited by: 40
Author(s): E. Magda Price, Maria S. Peñaherrera, Élodie Portales-Casamar, Paul Pavlidis, Margot I. Van Allen, Deborah E. McFadden, Wendy P. Robinson
Software Mentions: 2
Published: over 10 years ago

10.1080/15592294.2017.1395121

Generation of an arrayed CRISPR-Cas9 library targeting epigenetic regulators: from high-content screens to in vivo assays
Cited by: 24
Author(s): Tristan Henser-Brownhill, Josep Monserrat, Paola Scaffidi
Software Mentions: 2
Published: over 8 years ago

10.1038/s41597-021-00953-4

Transcriptome of rat subcortical white matter and spinal cord after spinal injury and cortical stimulation
Cited by: 0
Author(s): Bethany R. Kondiles, Haichao Wei, Lesley Chaboub, Philip J. Horner, Jia Qian Wu, Steve I. Perlmutter
Software Mentions: 2
Published: almost 5 years ago

10.1080/15592294.2019.1649527

Non-alcoholic fatty liver disease (NAFLD) is associated with dynamic changes in DNA hydroxymethylation
Cited by: 29
Author(s): Marcus J. Lyall, John P. Thomson, Jessy Cartier, Raffaele Ottaviano, Timothy J. Kendall, Richard R. Meehan, Amanda J. Drake
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep07649

Recombination is a key driver of genomic and phenotypic diversity in a Pseudomonas aeruginosa population during cystic fibrosis infection
Cited by: 107
Author(s): Sophie E. Darch, Alan McNally, Freya Harrison, Jukka Corander, Helen L. Barr, Konrad Paszkiewicz, Stephen Holden, Andrew Fogarty, Shanika A. Crusz, Stephen P. Diggle
Software Mentions: 2
Published: over 11 years ago

10.1002/etc.4844

Simulating Honey Bee Large‐Scale Colony Feeding Studies Using the BEEHAVE Model—Part II: Analysis of Overwintering Outcomes
Cited by: 8
Author(s): Farah Abi‐Akar, Amélie Schmolke, Colleen Roy, Nika Galić, Silvia Hinarejos
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-30891-y

Investigating the role of landscape composition on honey bee colony winter mortality: A long-term analysis
Cited by: 20
Author(s): Sabrina Kuchling, Ian Kopacka, Elfriede Kalcher-Sommersguter, Michael P. Schwarz, Karl Crailsheim, Robert Brodschneider
Software Mentions: 2
Published: almost 8 years ago

10.1007/s11356-020-09621-3

Distance to landfill and human activities affects the debris incorporation into the white stork nests in urbanized landscape in central Spain
Cited by: 13
Author(s): Zuzanna Jagiełło, Alejandro López‐García, José I. Aguirre, Łukasz Dylewski
Software Mentions: 2
Published: about 6 years ago

10.1007/s11356-021-13885-8

Characterization of microbial response to petroleum hydrocarbon contamination in a lacustrine ecosystem
Cited by: 6
Author(s): Emilio D’Ugo, Marco Bruno, Arghya Mukherjee, Dhrubajyoti Chattopadhyay, Roberto Giuseppetti, Rita De Pace, Fabio Magurano
Software Mentions: 2
Published: about 5 years ago

10.1007/s11356-021-14508-y

Assessment of anthropogenic pollution by monitoring occurrence and distribution of chemicals in the river Liffey in Dublin
Cited by: 2
Author(s): Rosa Peñalver, Matthew Jacobs, Susan Hegarty, Fiona Regan
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-30723-z

Surviving host - and food relevant stresses: phenotype of L. monocytogenes strains isolated from food and clinical sources
Cited by: 16
Author(s): Jule Anna Horlbog, David J. Kent, Roger Stephan, Claudia Guldimann
Software Mentions: 2
Published: almost 8 years ago

10.1111/1462-2920.14896

Ecogenomics of the SAR11 clade
Cited by: 55
Author(s): Jose M. Haro‐Moreno, Francisco Rodrı́guez-Valera, Riccardo Rosselli, Francisco Martínez-Hernández, Juan J. Roda‐Garcia, Mónica Lluesma Gómez, Òscar Fornas, Manuel Martínez‐García, Mario López‐Pérez
Software Mentions: 2
Published: over 6 years ago

10.1111/1462-2920.15269

Unravelling lactate‐acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics
Cited by: 34
Author(s): Sudarshan A. Shetty, Sjef Boeren, Thi Phuong Nam Bui, Hauke Smidt, Willem M. de Vos
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-32619-4

Sharing an environment with sick conspecifics alters odors of healthy animals
Cited by: 16
Author(s): Stephanie S. Gervasi, Maryanne Opiekun, Talia Martin, Gary K. Beauchamp, Bruce A. Kimball
Software Mentions: 2
Published: over 7 years ago

10.1186/s12940-015-0082-z

Building-related health impacts in European and Chinese cities: a scalable assessment method
Cited by: 7
Author(s): Jouni T. Tuomisto, Marjo Niittynen, Erkki Pärjälä, Arja Asikainen, Laura Pérez, Stephan Trüeb, Matti Jantunen, Nino Künzli, Clive E. Sabel
Software Mentions: 2
Published: over 10 years ago

10.1530/ERC-17-0442

The microbiome in PTEN hamartoma tumor syndrome
Cited by: 5
Author(s): Victoria Byrd, Ted M. Getz, Roshan Padmanabhan, Hans Arora, Charis Eng
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms221910666

In Silico Study of the RSH (RelA/SpoT Homologs) Gene Family and Expression Analysis in Response to PGPR Bacteria and Salinity in Brassica napus
Cited by: 8
Author(s): Grażyna B. Dąbrowska, Sena Turkan, Wioleta Tylman-Mojżeszek, Agnieszka Mierek‐Adamska
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-34267-0

Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations
Cited by: 20
Author(s): Lídia Mateo, Gabriel E. Rech
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-35074-3

Geographical and temporal distribution of the residual clusters of human leptospirosis in China, 2005–2016
Cited by: 16
Author(s): Pandji Wibawa Dhewantara, Abdullah Al Mamun, Wenyi Zhang, Wenwu Yin, Fan Ding, Danhuai Guo, Wenbiao Hu, Ricardo J. Soares Magalhães
Software Mentions: 2
Published: over 7 years ago

10.1007/s00125-021-05558-5

Sitting less elicits metabolic responses similar to exercise and enhances insulin sensitivity in postmenopausal women
Cited by: 8
Author(s): Carlijn M. E. Remie, Georges E. Janssens, Lena Bilet, Michel van Weeghel, Bernard M. F. M. Duvivier, Vera H. W. de Wit, Niels J. Connell, Johanna A. Jörgensen, Bauke V. Schomakers, Vera B. Schrauwen‐Hinderling, Joris Hoeks, Matthijs K. C. Hesselink, Esther Phielix, Riekelt H. Houtkooper, Patrick Schrauwen
Software Mentions: 2
Published: almost 5 years ago

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