cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/pathogens10030376

Host-Feeding Preference and Diel Activity of Mosquito Vectors of the Japanese Encephalitis Virus in Rural Cambodia
Cited by: 19
Author(s): Sébastien Boyer, Benoı̂t Durand, Sony Yean, Cécile Brengues, Pierre‐Olivier Maquart, Didier Fontenille, Véronique Chevalier
Software Mentions: 3
Published: over 5 years ago

10.3390/pathogens9020131

Metabolic Changes of Mycobacterium tuberculosis during the Anti-Tuberculosis Therapy
Cited by: 9
Author(s): Julia Bespyatykh, Egor Shitikov, Dmitry Bespiatykh, Andrei Guliaev, Ksenia M. Klimina, Vladimir A. Veselovsky, Georgij Arapidi, Marine Dogonadze, Viacheslav Zhuravlev, Elena Ilina, Vadim M. Govorun
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.8333

Risk-sensitive foraging does not explain condition-dependent choices in settling reef fish larvae
Cited by: 0
Author(s): Emma E Bogdan, Andrea L Dingeldein, Deirdre Bertrand, Will White
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.9387

The level of putative carotenoid-binding proteins determines the body color in two species of endemic Lake Baikal amphipods
Cited by: 4
Author(s): Polina Drozdova, Alexandra Saranchina, M. M. Morgunova, Alena Kizenko, Yulia Lubyaga, Boris Baduev, Maxim A. Timofeyev
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.8155

Environmental DNA detection and quantification of invasive red-eared sliders, Trachemy scripta elegans, in ponds and the influence of water quality
Cited by: 10
Author(s): Aozora Kakuda, Hideyuki Doi, Rio Souma, Mariko Nagano, Toshifumi Minamoto, Izumi Katano
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.4573

Simulated Disperser Analysis: determining the number of loci required to genetically identify dispersers
Cited by: 1
Author(s): Adam P. A. Cardilini, Craig D. H. Sherman, William B. Sherwin, Lee A. Rollins
Software Mentions: 3
Published: about 8 years ago

10.7717/peerj.5365

More of the same: allopatric humpback whale populations share acoustic repertoire
Cited by: 14
Author(s): Michelle E. H. Fournet, Lauren Jacobsen, Christine M. Gabriele, David K. Mellinger, Holger Klinck
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.9955

High microphone signal-to-noise ratio enhances acoustic sampling of wildlife
Cited by: 23
Author(s): Kevin Darras, Franziska Deppe, Yvonne Fabian, Agus Priyono Kartono, Andres Angulo, Bjørn Kolbrek, Yeni Mulyani, Dewi M. Prawiradilaga
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.8930

Transcriptome analysis revealed key prognostic genes and microRNAs in hepatocellular carcinoma
Cited by: 24
Author(s): Xi Ma, Lin Zhou, Shusen Zheng
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.11832

Developmental instability in wild Nigerian olive baboons (Papio anubis)
Cited by: 0
Author(s): Kara C. Hoover, Emily Gelipter, Volker Sommer, Kris Kovarovic
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.11145

COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
Cited by: 32
Author(s): Qishun Geng, Zhibo Shen, Lifeng Li, Jie Zhao
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.6775

Distribution of crabs along a habitat gradient on the Yellow Sea coast after Spartina alterniflora invasion
Cited by: 3
Author(s): Pan Chen, Yan Zhang, Xingyu Zhu, Changhu Lu
Software Mentions: 3
Published: about 7 years ago

10.7717/peerj.7441

Identification of pivotal lncRNAs in papillary thyroid cancer using lncRNA–mRNA–miRNA ceRNA network analysis
Cited by: 16
Author(s): Weiwei Liang, Fangfang Sun
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.8287

Use of environmental DNA (eDNA) in streams to detect feral swine (Sus scrofa)
Cited by: 4
Author(s): Amberly Hauger, Karmen M. Hollis-Etter, Dwayne R. Etter, Gary J. Roloff, Andrew R. Mahon
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.8424

Airborne microbial biodiversity and seasonality in Northern and Southern Sweden
Cited by: 20
Author(s): Edvin Karlsson, Anna-Mia Johansson, Jon Ahlinder, Moa J. Lundkvist, Navinder J. Singh, Tomas Brodin, Mats Forsman, Per Stenberg
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.9891

The relationship between individual phenotype and the division of labour in naked mole-rats: it’s complicated
Cited by: 17
Author(s): James D. Gilbert, Stephen J. Rossiter, Chris G. Faulkes
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.8144

Navigating oxygen deprivation: liver transcriptomic responses of the red eared slider turtle to environmental anoxia
Cited by: 10
Author(s): Kyle K. Biggar, Jing Zhang, Kenneth B. Storey
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.2829

Hydrogel scaffolds promote neural gene expression and structural reorganization in human astrocyte cultures
Cited by: 12
Author(s): V. Bleu Knight, Elba E. Serrano
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.2185

The potential effects of climate change on amphibian distribution, range fragmentation and turnover in China
Cited by: 67
Author(s): Renyan Duan, Xiaoquan Kong, Minyi Huang, Sara Varela, Xiang Ji
Software Mentions: 3
Published: almost 10 years ago

10.7717/peerj.11574

Shifts in gut and vaginal microbiomes are associated with cancer recurrence time in women with ovarian cancer
Cited by: 11
Author(s): David P. Jacobson, Kathleen Moore, Camille C. Gunderson, M. Rowland, Rita M. Austin, Tanvi P. Honap, Jiawu Xu, Christina Warinner, Krithivasan Sankaranarayanan, Cecil M. Lewis
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.4299

A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions
Cited by: 118
Author(s): Jeffery M. Saarela, Sean V. Burke, William P. Wysocki, Matthew D. Barrett, Lynn G. Clark, Joseph M. Craine, Paul M. Peterson, Robert J. Soreng, Maria S. Vorontsova, Melvin R. Duvall
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.10695

Local dynamics of a white syndrome outbreak and changes in the microbial community associated with colonies of the scleractinian brain coral Pseudodiploria strigosa
Cited by: 16
Author(s): Patricia E. Thomé, Jacqueline Rivera-Ortega, Jenny Carolina Rodríguez‐Villalobos, Daniel Cerqueda‐García, Edgar O. Guzmán-Urieta, José Q. García-Maldonado, Natalia Carabantes, Eric Jordán-Dahlgren
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.306

Degree of adaptive response in urban tolerant birds shows influence of habitat-of-origin
Cited by: 4
Author(s): Lawrence E Conole
Software Mentions: 3
Published: over 12 years ago

10.7717/peerj.9635

Spatial distribution of microbial communities among colonies and genotypes in nursery-reared Acropora cervicornis
Cited by: 14
Author(s): Nicole Miller, Paul Maneval, Carrie Manfrino, Thomas K. Frazer, Julie Meyer
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.3687

Sediment microbial taxonomic and functional diversity in a natural salinity gradient challenge Remane’s “species minimum” concept
Cited by: 31
Author(s): Christina Pavloudi, Jon Bent Kristoffersen, Anastasis Oulas, Marleen De Troch, Christos Arvanitidis
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pgen.1006620

Mutations in mitochondrial DNA causing tubulointerstitial kidney disease
Cited by: 47
Author(s): Thomas M. Connor, Simon Hoer, Andrew Mallett, Daniel P. Gale, Aurora Gómez-Durán, Viktor Posse, Robin Antrobus, Pablo Moreno, Marco Sciacovelli, Christian Frezza, Jennifer Duff, Neil Sheerin, John A. Sayer, Margaret Ashcroft, Michael S. Wiesener, Gavin Hudson, Claes M. Gustafsson, Patrick F. Chinnery, Patrick H. Maxwell
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pgen.1008083

The dPix-Git complex is essential to coordinate epithelial morphogenesis and regulate myosin during Drosophila egg chamber development
Cited by: 6
Author(s): Lucas Dent, Samuel A. Manning, Benjamin Kroeger, Audrey Miller Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne‐Badovinac, Kieran F. Harvey
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pgen.1005122

SERPINB11 Frameshift Variant Associated with Novel Hoof Specific Phenotype in Connemara Ponies
Cited by: 22
Author(s): Carrie J. Finno, Carlynn Stevens, Amy Young, Verena K. Affolter, Nikhil Joshi, Sheila Ramsay, Danika L. Bannasch
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pgen.1007071

Profiling RNA-Seq at multiple resolutions markedly increases the number of causal eQTLs in autoimmune disease
Cited by: 20
Author(s): Christopher A. Odhams, Deborah S. Cunninghame Graham, Timothy J. Vyse
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pmed.1003393

The risk of Plasmodium vivax parasitaemia after P. falciparum malaria: An individual patient data meta-analysis from the WorldWide Antimalarial Resistance Network
Cited by: 29
Author(s): Mohammad Sharif Hossain, Robert J. Commons, Nicholas M. Douglas, Kamala Thriemer, Bereket Alemayehu, Chanaki Amaratunga, Anupkumar R. Anvikar, Elizabeth A. Ashley, Puji Budi Setia Asih, Verena I. Carrara, Chanthap Lon, Umberto D’Alessandro, Timothy Davis, Arjen M. Dondorp, Michael D. Edstein, Rick M. Fairhurst, Marcelo U. Ferreira, Jimee Hwang, Bart Janssens, Harin Karunajeewa, J. R. Kiechel, Simone Ladeia‐Andrade, Moses Laman, Mayfong Mayxay, Rose McGready, Brioni R. Moore, Ivo Müeller, Paul N. Newton, Nguyen Thanh Thuy-Nhien, Harald Noedl, François Nosten, Aung Phae Phyo, Jeanne Rini Poespoprodjo, David Saunders, Frank Smithuis, Michele Spring, Kasia Stepniewska, Seila Suon, Yupin Suputtamongkol, Din Syafruddin, Hien T. Tran, Neena Valecha, Michel Van Herp, Michèle van Vugt, Nicholas J. White, Philippe J. Guérin, Julie A. Simpson, Ric N. Price
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pmed.1003062

Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis
Cited by: 371
Author(s): Tom G Richardson, Eleanor Sanderson, Tom Palmer, Mika Ala‐Korpela, Brian А. Ference, George Davey Smith, Michael V Holmes
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pntd.0009334

Aedes aegypti dyspepsia encodes a novel member of the SLC16 family of transporters and is critical for reproductive fitness
Cited by: 6
Author(s): Hitoshi Tsujimoto, Michelle A. E. Anderson, Heather Eggleston, K.M. Myles, Zach N. Adelman
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pntd.0007412

Malaria vector species in Amazonian Peru co-occur in larval habitats but have distinct larval microbial communities
Cited by: 23
Author(s): Catharine Prussing, Marlon P. Saavedra, Sara A. Bickersmith, Freddy Alava, Mitchel Guzmán, Edgar Manrique, Gabriel Carrasco-Escobar, Marta Moreno, Dionicia Gamboa, Joseph M. Vinetz, Jan E. Conn
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pntd.0004414

Current Perspectives on Plague Vector Control in Madagascar: Susceptibility Status of Xenopsylla cheopis to 12 Insecticides
Cited by: 22
Author(s): Adélaïde Miarinjara, Sébastien Boyer
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pntd.0007397

Interplay between proinflammatory cytokines, miRNA, and tissue lesions in Anisakis-infected Sprague-Dawley rats
Cited by: 21
Author(s): Jerko Hrabar, Željka Trumbić, Ivana Bočina, Ivana Bušelić, Anamarija Vrbatović, Ivona Mladineo
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pntd.0008783

Homologous and heterologous re-challenge with Salmonella Typhi and Salmonella Paratyphi A in a randomised controlled human infection model
Cited by: 13
Author(s): Malick M. Gibani, Chunlin Jin, Sonu Shrestha, Maria Moore, Lily Norman, Merryn Voysey, Elizabeth Jones, Luke Blackwell, Helena Thomaides-Brears, Jennifer Hill, Christoph J. Blohmke, Hazel Dobinson, Philip Baker, Claire Jones, Danielle Campbell, Yama F Mujadidi, Emma Plested, Lorena Preciado-Llanes, Giorgio Napolitani, Alison Simmons, Melita A. Gordon, Brian Angus, Thomas C. Darton, Vincenzo Cerundulo, Andrew J. Pollard
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0007620

Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers
Cited by: 58
Author(s): Danielle J. Ingle, Satheesh Nair, Hassan Hartman, Philip Ashton, Zoe A. Dyson, Martin Day, Joanne Freedman, Marie Anne Chattaway, Kathryn E. Holt, Timothy J. Dallman
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pntd.0007850

A glance of the blood stage transcriptome of a Southeast Asian Plasmodium ovale isolate
Cited by: 5
Author(s): Awtum Brashear, Wanlapa Roobsoong, Faiza Amber Siddiqui, Wang Nguitragool, Jetsumon Sattabongkot, Margarita M. López‐Uribe, Jun Miao, Liwang Cui
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pntd.0007263

The case-area targeted rapid response strategy to control cholera in Haiti: a four-year implementation study
Cited by: 25
Author(s): Stanislas Rebaudet, Gregory Bulit, Jean Gaudart, Edwige Michel, Pierre Gazin, Claudia Evers, Samuel Beaulieu, Aaron Aruna Abedi, Lindsay Osei, Robert Barrais, Katilla Pierre, Sandra Moore, Jacques Boncy, Paul Adrien, Florence Duperval Guillaume, Edouard Beigbeder, Renaud Piarroux
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pntd.0006521

Chikungunya virus vector competency of Brazilian and Florida mosquito vectors
Cited by: 24
Author(s): Nildimar Alves Honório, Keenan Wiggins, Daniel Cardoso Portela Câmara, Bradley Eastmond, Barry W. Alto
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pntd.0009259

Climatic and socio-economic factors supporting the co-circulation of dengue, Zika and chikungunya in three different ecosystems in Colombia
Cited by: 26
Author(s): Jasmine Morgan, Clare Strode, J. Enrique Salcedo-Sora
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0005104

Differential Protein Expression in the Hemolymph of Bithynia siamensis goniomphalos Infected with Opisthorchis viverrini
Cited by: 11
Author(s): Kulwadee Suwannatrai, Apiporn Suwannatrai, Pairat Tabsripair, Jariya Umka Welbat, Sirikachorn Tangkawattana, Cinzia Cantacessi, Jason Mulvenna, Smarn Tesana, Alex Loukas, Javier Sotillo
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pntd.0007783

A peridomestic Aedes malayensis population in Singapore can transmit yellow fever virus
Cited by: 10
Author(s): Elliott F. Miot, Fabien Aubry, Stéphanie Dabo, Ian H. Mendenhall, Sébastien Marcombe, Cheong Huat Tan, Lee Ching Ng, Anna‐Bella Failloux, Julien Pompon, Paul T. Brey, Louis Lambrechts
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pntd.0008870

Alteration in the Culex pipiens transcriptome reveals diverse mechanisms of the mosquito immune system implicated upon Rift Valley fever phlebovirus exposure
Cited by: 3
Author(s): Ana Isabel Núñez, Anna Esteve‐Codina, Jèssica Gómez‐Garrido, Marco Brustolin, Sandra Talavera, Miguel Berdugo, Marc Dabad, Tyler Alioto, Albert Bensaïd, Núria Busquets
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0009635

The influence of leprosy-related clinical and epidemiological variables in the occurrence and severity of COVID-19: A prospective real-world cohort study
Cited by: 14
Author(s): Selma Regina Penha Silva Cerqueira, Patrícia Duarte Deps, Débora Rosilei Miquini de Freitas Cunha, Natanael Victor Furtunato Bezerra, Daniel Holanda Barroso, Ana Bárbara Sapienza Pinheiro, Gecilmara Salviato Pillegi, Taynah Alves Rocha Repsold, Patrícia Shu Kurizky, Simon M Collin, Ciro Martins Gomes
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0242773

Coupling of autism genes to tissue-wide expression and dysfunction of synapse, calcium signalling and transcriptional regulation
Cited by: 13
Author(s): Jamie Reilly, Louise Gallagher, Geraldine Leader, Sanbing Shen
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0245439

Impact of integrating objective structured clinical examination into academic student assessment: Large-scale experience in a French medical school
Cited by: 10
Author(s): Alexandre Matet, Ludovic Fournel, F. Gaillard, Laurence Amar, Jean‐Benoît Arlet, Stéphanie Baron, Anne‐Sophie Bats, Céline Buffel du Vaure, Caroline Charlier, Victoire de Lastours, Albert Faye, Eve Jablon, Natacha Kadlub, Julien Leguen, David Lebeaux, Alexandre Malmartel, Tristan Mirault, Benjamin Planquette, Alexis Régent, Jean-Laurent Thébault, Alexy Tran-Dinh, Alexandre Nuzzo, Guillaume Turc, Gérard Friedlander, Philippe Ruszniewski, Cécile Badoual, Brigitte Ranque, Mehdi Oualha, Marie Courbebaisse
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0142667

The Hidden Sexuality of Alexandrium Minutum: An Example of Overlooked Sex in Dinoflagellates
Cited by: 34
Author(s): Rosa Isabel Figueroa, Carlos Dapena, Isabel Bravo, Ángeles Cuadrado
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0251227

Circulating levels of angiogenic factors and their association with preeclampsia among pregnant women at Mulago National Referral Hospital in Uganda
Cited by: 5
Author(s): Sheila Nabweyambo, Obondo J. Sande, Naomi McGovern, Freddie Bwanga, Alfred Ssekagiri, Annette Keesiga, Moses Adroma, Ronald Wasswa, Maxine Atuheirwe, Juliet Namugenyi, Barbara Castelnuovo, Annettee Nakimuli
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0131451

New Metrics for Evaluating Viral Respiratory Pathogenesis
Cited by: 55
Author(s): Vineet D. Menachery, Lisa E. Gralinski, Ralph S. Baric, Martin T. Ferris
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0247060

Angiotensin-converting enzyme 2 (ACE2) expression increases with age in patients requiring mechanical ventilation
Cited by: 66
Author(s): Sam W. Baker, Shirley Kwok, Gerald J. Berry, Thomas J. Montine
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0183898

The nasal microbiota of dairy farmers is more complex than oral microbiota, reflects occupational exposure, and provides competition for staphylococci
Cited by: 33
Author(s): Sanjay Kumar Shukla, Zhan Ye, Scott Sandberg, Iris Reyes, Thomas R. Fritsche, Matthew Keifer
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0212797

The role of weather conditions on running performance in the Boston Marathon from 1972 to 2018
Cited by: 28
Author(s): Beat Knechtle, Stefania Di Gangi, Christoph Alexander Rüst, Elias Villiger, Thomas Rosemann, Pantelis Theodoros Nikolaidis
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0254541

Transcriptome profiling in susceptible and tolerant rubber tree clones in response to cassiicolin Cas1, a necrotrophic effector from Corynespora cassiicola
Cited by: 5
Author(s): Sébastien Ribeiro, Philippe Label, Dominique García, Pascal Montoro, Valérie Pujade-Renaud
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0224179

Collembola laterally move biochar particles
Cited by: 6
Author(s): Stefanie Maaß, Ronja Hückelheim, Matthias C. Rillig
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0218270

Quantifying murine placental extracellular vesicles across gestation and in preterm birth data with tidyNano: A computational framework for analyzing and visualizing nanoparticle data in R
Cited by: 16
Author(s): Sean L. Nguyen, Jacob W. Greenberg, Hao Wang, Benjamin W. Collaer, Jianrong Wang, Margaret G. Petroff
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0231367

Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives
Cited by: 5
Author(s): Jessica M. Vélez, Reese M. Morris, Rytas Vilgalys, Jessy Labbé, Christopher W. Schadt
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0157937

Comorbid Analysis of Genes Associated with Autism Spectrum Disorders Reveals Differential Evolutionary Constraints
Cited by: 20
Author(s): Maude M. David, David Enard, Alp Ozturk, Jena Daniels, Ji Ye Jung, Leticia Díaz-Beltrán, Dennis P. Wall
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0255097

Proximity can induce diverse friendships: A large randomized classroom experiment
Cited by: 6
Author(s): Julia M. Rohrer, Tamás Keller, Felix Elwert
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0225246

Genetic and morphological divergence in the warm-water planktonic foraminifera genus Globigerinoides
Cited by: 33
Author(s): Raphaël Morard, Angelina Füllberg, G.J.A. Brummer, Mattia Greco, Lukas Jonkers, André Wizemann, Agnes Weiner, Kate Darling, Michael Siccha, Ronan Ledevin, Hiroshi Kitazato, Thibault de Garidel‐Thoron, Colomban de Vargas, Michal Kučera
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0197464

Polyclonal human antibodies against glycans bearing red meat-derived non-human sialic acid N-glycolylneuraminic acid are stable, reproducible, complex and vary between individuals: Total antibody levels are associated with colorectal cancer risk
Cited by: 42
Author(s): Annie N. Samraj, Kimberly A. Bertrand, Robert Luben, Zahra Khedri, Hai Yu, Dong Van Nguyen, Christopher Gregg, Sandra Díaz, Sherilyn Sawyer, Xi Chen, Heather Eliassen, Vered Padler‐Karavani, Kana Wu, Kay Tee Khaw, Walter C. Willett, Ajit Varki
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0142360

Can Genetic Analysis of Putative Blood Alzheimer’s Disease Biomarkers Lead to Identification of Susceptibility Loci?
Cited by: 12
Author(s): Robert C. Barber, Nicole Phillips, Jeffrey L. Tilson, Ryan M. Huebinger, Shantanu Shewale, Jessica L. Koenig, Jeffrey S. Mitchel, Sid O’Bryant, Stephen C. Waring, Ramon Diaz‐Arrastia, Scott A. Chasse, Kirk C. Wilhelmsen
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0150165

Music and Video Gaming during Breaks: Influence on Habitual versus Goal-Directed Decision Making
Cited by: 4
Author(s): Shuyan Liu, Daniel J. Schad, Maxim S. Kuschpel, Michael A. Rapp, Andreas Heinz
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0078482

Role of Upwelling on Larval Dispersal and Productivity of Gooseneck Barnacle Populations in the Cantabrian Sea: Management Implications
Cited by: 15
Author(s): Antonella Rivera, Nicolás Weidberg, Antonio F. Pardiñas, Ricardo González-Gil, Lucía García‐Flórez, José Luis Acuña
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0239263

Diversity of nutritional content in seeds of Brazilian common bean germplasm
Cited by: 11
Author(s): Jéssica Delfini, Vânia Moda-Cirino, José dos Santos Neto, Juliana Sawada Buratto, Paulo Maurício Ruas, Leandro Simões Azeredo Gonçalves
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0104567

Tandem RNA Chimeras Contribute to Transcriptome Diversity in Human Population and Are Associated with Intronic Genetic Variants
Cited by: 30
Author(s): Liliana Greger, Jing Su, Johan Rung, Pedro G. Ferreira, Tuuli Lappalainen, Emmanouil T. Dermitzakis, Alvis Brāzma
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0164295

Cross-Species Analysis of Gene Expression and Function in Prefrontal Cortex, Hippocampus and Striatum
Cited by: 12
Author(s): Wei Chen, Xiayu Xia, Nan Song, Ying Wang, Hua Zhu, Wei Deng, Qi Kong, Xianmin Pan, Chuan Qin
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0210862

Spontaneous eye movements during focused-attention mindfulness meditation
Cited by: 7
Author(s): Alessio Matiz, Cristiano Crescentini, Anastasia Fabbro, Riccardo Budai, Massimo Bergamasco, Franco Fabbro
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0226547

Analysis of 13,312 benthic invertebrate samples from German streams reveals minor deviations in ecological status class between abundance and presence/absence data
Cited by: 27
Author(s): Dominik Buchner, Arne J. Beermann, Alex Laini, Peter Rolauffs, Simon Vitecek, Daniel Hering, Florian Leese
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0254136

Cytomegalovirus infection in malignant pleural mesothelioma
Cited by: 2
Author(s): De Von Hunter-Schlichting, Karl T. Kelsey, Ryan T. Demmer, Manish R. Patel, Raphael Bueno, Brock C. Christensen, Naomi Fujioka, Deepa Kolarseri, Heather H. Nelson
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0230106

In RRP, serologic response to HPV is frequently absent and slow to develop
Cited by: 8
Author(s): Farrel J. Buchinsky, Nicole Ruszkay, William L. Valentino, Craig S. Derkay, John E. McClay, Robert W. Bastian, Charles M. Myer, Kevin W. Lollar, Dalya Güriş
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0152370

Foraging Behavior of Subantarctic Fur Seals Supports Efficiency of a Marine Reserve’s Design
Cited by: 19
Author(s): Stephen P. Kirkman, Dawit Yemane, Tarron Lamont, Michael A. Meÿer, Pierre A. Pistorius
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0256328

Identifying fungal-host associations in an amphibian host system
Cited by: 4
Author(s): Alexandra Alexiev, Melissa Y. Chen, Valerie J. McKenzie
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0200049

Variation and diversification of the microbiome of Schlechtendalia chinensis on two alternate host plants
Cited by: 8
Author(s): Haixia Wu, Xiaoming Chen, Hang Chen, Qin Lu, Zixiang Yang, Weibin Ren, Juan Liu, Shihe Shao, Chao Wang, Kirst King-Jones, Ming‐Shun Chen
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0200527

Modulation of the honey bee queen microbiota: Effects of early social contact
Cited by: 36
Author(s): J. Elijah Powell, Daren M. Eiri, Nancy A. Moran, Juliana Rangel
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0099806

Predation on Rose Galls: Parasitoids and Predators Determine Gall Size through Directional Selection
Cited by: 10
Author(s): Zsuzsanna László, Katalin Sólyom, Hunor Prázsmári, Zoltán Barta, Béla Tóthmérész
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0191530

Within host selection for faster replicating bacterial symbionts
Cited by: 21
Author(s): Ewa Chrostek, Luı́s Teixeira
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0073573

Altered Expression of Cyclin A 1 In Muscle of Patients with Facioscapulohumeral Muscle Dystrophy (FSHD-1)
Cited by: 9
Author(s): Anna Pakuła, Joanna Schneider, Jürgen Janke, Ute Zacharias, Herbert Schulz, Norbert Hübner, Anja Mähler, Andreas Spuler, Simone Spuler, Pierre Carlier, Michael Boschmann
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0233557

The intestinal virome in children with cystic fibrosis differs from healthy controls
Cited by: 10
Author(s): Michael J. Coffey, Ivan Cherh Chiet Low, Sacha Stelzer-Braid, Bernd Wemheuer, Millie Garg, Torsten Thomas, Adam Jaffé, William D. Rawlinson, Chee Y. Ooi
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0054379

Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women
Cited by: 199
Author(s): Tiina Drell, Triin Lillsaar, Lea Tummeleht, Jaak Simm, Anu Aaspõllu, Edda Väin, Ivo Saarma, Andres Salumets, Gilbert Donders, Madis Metsis
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0222205

Living on the edge - circadian habitat usage in pre-weaning European hares (Lepus europaeus) in an intensively used agricultural area
Cited by: 11
Author(s): Ulrich Voigt, Ursula Siebert
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0181769

Monitoring protected areas from space: A multi-temporal assessment using raptors as biodiversity surrogates
Cited by: 9
Author(s): Adrián Regos, Luis Tapia, Alberto Gil-Carrera, Jesús Domínguez
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0258281

Visualising household air pollution: Colorimetric sensor arrays for monitoring volatile organic compounds indoors
Cited by: 0
Author(s): Emer Duffy, Kati Huttunen, Roosa Lahnavik, Alan F. Smeaton, Aoife Morrin
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0184373

Identification of sero-reactive antigens for the early diagnosis of Johne’s disease in cattle
Cited by: 14
Author(s): Lingling Li, John P. Bannantine, Joseph J. Campo, Arlo Randall, Yrjo T. Gröhn, Robab Katani, Megan A. Schilling, Jessica Radzio‐Basu, Vivek Kapur
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0222531

Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach
Cited by: 22
Author(s): René S. Hendriksen, Oksana Lukjancenko, Patrick Munk, Mathis Hjort Hjelmsø, Jennifer R. Verani, Eric Ng’eno, Godfrey Bigogo, Samuel Kiplangat, Traoré Soumana Oumar, Lasse Bergmark, Timo Röder, John Neatherlin, Clayton Onyango, Tine Hald, Susanne Karlsmose, Sünje Johanna Pamp, Barry S. Fields, Joel M. Montgomery, Frank Møller Aarestrup
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0249997

Genome-wide association study of antipsychotic-induced sinus bradycardia in Chinese schizophrenia patients
Cited by: 3
Author(s): Saizheng Weng, Bo Wang, Mo Li, Shan Chao, Lin Rui-qian, Rongyan Zheng, Yun William Yu, Shaonan Guo, Xianhao Lin
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0118424

Non-Viral Generation of Marmoset Monkey iPS Cells by a Six-Factor-in-One-Vector Approach
Cited by: 38
Author(s): Katharina Debowski, Rita Warthemann, Jana Lentes, Gabriela Salinas-Riester, Ralf Dressel, Daniel Langenstroth, Jörg Gromoll, Erika Sasaki, Rüdiger Behr
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0213355

A different suite: The assemblage of distinct fungal communities in water-damaged units of a poorly-maintained public housing building
Cited by: 17
Author(s): Iman Sylvain, Rachel Adams, John W. Taylor
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0217895

Effects of antioxidant-rich foods on altitude-induced oxidative stress and inflammation in elite endurance athletes: A randomized controlled trial
Cited by: 25
Author(s): Anu Koivisto, Trond E. Olsen, Ingvild Paur, Gøran Paulsen, Nasser E. Bastani, Ina Garthe, Truls Raastad, Jason Matthews, Rune Blomhoff, Siv Kjølsrud Bøhn
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0112755

Identification of Novel Genetic Risk Loci in Maltese Dogs with Necrotizing Meningoencephalitis and Evidence of a Shared Genetic Risk across Toy Dog Breeds
Cited by: 28
Author(s): Isabelle Schrauwen, Renee M. Barber, Scott J. Schatzberg, Ashley L. Siniard, Jason J. Corneveaux, Brian F. Porter, Karen M. Vernau, Rebekah I. Keesler, Kaspar Matiasek, Thomas Flegel, Andrew D. Miller, Teresa Southard, Christopher L. Mariani, Gayle C. Johnson, Matthew J. Huentelman
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0252954

Perinatal exposure to a human relevant mixture of persistent organic pollutants: Effects on mammary gland development, ovarian folliculogenesis and liver in CD-1 mice
Cited by: 3
Author(s): Silje Modahl Johanson, Erik Ropstad, Gunn Charlotte Østby, Mona Aleksandersen, Galia Zamaratskaia, Gudrun Seeberg Boge, Ruth Halsne, Cathrine Trangerud, Jan Ludvig Lyche, Hanne Friis Berntsen, Karin Elisabeth Zimmer, Steven Verhaegen
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0242200

Selection signatures in two oldest Russian native cattle breeds revealed using high-density single nucleotide polymorphism analysis
Cited by: 17
Author(s): N. A. Zinovieva, Arsen V Dotsev, A.A. Sermyagin, Tatiana Deniskova, Alexandra Abdelmanova, В. Р. Харзинова, Johann Sölkner, Henry Reyer, Klaus Wimmers, Gottfried Brem
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0208292

An exploratory study of factors associated with human brucellosis in mainland China based on time-series-cross-section data from 2005 to 2016
Cited by: 5
Author(s): Yun Lin, Mingqing Xu, Xingyu Zhang, Tao Zhang
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0221828

Dietary inulin alters the gut microbiome, enhances systemic metabolism and reduces neuroinflammation in an APOE4 mouse model
Cited by: 73
Author(s): Jared D. Hoffman, Lucille M. Yanckello, George E. Chlipala, Tyler C. Hammond, Scott McCulloch, Ishita Parikh, Sydney Sun, Josh M. Morganti, Stefan J. Green, Ai-Ling Lin
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0155957

Genetic and Environmental Control of Neurodevelopmental Robustness in Drosophila
Cited by: 17
Author(s): David J. Mellert, W. Ryan Williamson, Troy R. Shirangi, Gwyneth M Card, James W. Truman
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0181333

Plant species dispersed by Galapagos tortoises surf the wave of habitat suitability under anthropogenic climate change
Cited by: 24
Author(s): Diego Ellis‐Soto, Stephen Blake, Alaa Eldin Soultan, Anne Guézou, Fredy Cabrera, Stefan Lötters
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0101205

Movement-Based Estimation and Visualization of Space Use in 3D for Wildlife Ecology and Conservation
Cited by: 46
Author(s): Jeff A. Tracey, James K. Sheppard, Jun Zhu, Fuwen Wei, Ronald R. Swaisgood, Robert N. Fisher
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0237717

The effect of task-irrelevant spatial contexts on 360-degree attention
Cited by: 2
Author(s): Yuki Harada, Junji Ohyama
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0233251

Disentangling listening effort and memory load beyond behavioural evidence: Pupillary response to listening effort during a concurrent memory task
Cited by: 10
Author(s): Yue Zhang, Alexandre Lehmann, Mickael L. D. Deroche
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0115907

High Reproducibility of Histological Characterization by Whole Virtual Slide Quantification; An Example Using Carotid Plaque Specimens
Cited by: 11
Author(s): Joyce E. P. Vrijenhoek, Bastiaan G. L. Nelissen, Evelyn Velema, Kristy Vons, Jean‐Paul P.M. de Vries, Marinus J.C. Eijkemans, Hester M. den Ruijter, Gert J. de Borst, Frans L. Moll, Gérard Pasterkamp
Software Mentions: 3
Published: over 11 years ago

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Papers Mentioning ggplot2 11,441