cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2015.00966

Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential
Cited by: 39
Author(s): Richard Allen White, Ian M. Power, Gregory M. Dipple, Gordon Southam, Curtis A. Suttle
Software Mentions: 4
Published: almost 11 years ago

10.1534/g3.120.401306

Genotypic Characterization of the U.S. Peanut Core Collection
Cited by: 10
Author(s): Paul I. Otyama, R.S. Kulkarni, Kelly D. Chamberlin, Peggy Ozias‐Akins, Ye Chu, Lori M. Lincoln, Gregory E. MacDonald, Noelle L. Anglin, Sudhansu Dash, David J. Bertioli, David Fernández-Baca, Michelle A. Graham, Steven B. Cannon, Ethalinda K. S. Cannon
Software Mentions: 4
Published: almost 6 years ago

10.1038/srep27754

Ocular exposure to blue-enriched light has an asymmetric influence on neural activity and spatial attention
Cited by: 14
Author(s): Daniel P. Newman, Steven W. Lockley, Gerard M. Loughnane, Ana Carina Pamplona Martins, Rafael Abe, Marco T. R. Zoratti, Simon P. Kelly, Megan O'Neill, Shanthakumar M W Rajaratnam, Redmond G O’Connell, Mark A. Bellgrove
Software Mentions: 4
Published: about 10 years ago

10.1093/g3journal/jkaa042

Genetic mapping and transcriptomic characterization of a new fuzzless-tufted cottonseed mutant
Cited by: 2
Author(s): Qian Zhu, Warwick N. Stiller, Philippe Moncuquet, Stuart Gordon, Yuman Yuan, Scott Barnes, Iain W. Wilson
Software Mentions: 4
Published: over 5 years ago

10.1093/g3journal/jkab072

Photoperiod-dependent developmental reprogramming of the transcriptional response to seawater entry in Atlantic salmon (Salmo salar)
Cited by: 2
Author(s): Marianne Iversen, Teshome Dagne Mulugeta, Alexander C. West, Even H. Jørgensen, Samuel Martín, Simen Rød Sandve, David G. Hazlerigg
Software Mentions: 4
Published: over 5 years ago

10.1001/jamanetworkopen.2020.16571

Effect of Outpatient Rehabilitation on Functional Mobility After Single Total Knee Arthroplasty
Cited by: 1
Author(s): Ching-Hui Hsieh, Gerben DeJong, Michele T. Vita, Alexander Zeymo, Sameer Desale
Software Mentions: 4
Published: almost 6 years ago

10.12688/f1000research.15789.2

TRGAted: A web tool for survival analysis using protein data in the Cancer Genome Atlas.
Cited by: 18
Author(s): Nicholas Borcherding, Nicholas L. Bormann, Andrew P. Voigt, Weizhou Zhang
Software Mentions: 4
Published: almost 8 years ago

10.1038/srep25864

Nuclease Footprints in Sperm Project Past and Future Chromatin Regulatory Events
Cited by: 19
Author(s): Graham D. Johnson, Meritxell Jodar, Roger Piqué-Regi, Stephen A. Krawetz
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2020.00129

Broad and Fine Scale Variability in Bacterial Diversity and Cyanotoxin Quotas in Benthic Cyanobacterial Mats
Cited by: 8
Author(s): Georgia Thomson‐Laing, Jonathan Puddick, Olivier Laroche, Samantha Fulton, Konstanze Steiner, Mark W. Heath, Susanna A. Wood
Software Mentions: 4
Published: over 6 years ago

10.1093/g3journal/jkab085

A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.)
Cited by: 29
Author(s): Tomas N Generalovic, Shane McCarthy, Ian A. Warren, Jonathan Wood, James Torrance, Ying Sims, Michael A. Quail, Kerstin Howe, Miha Pipan, Richard Durbin, Chris D. Jiggins
Software Mentions: 4
Published: over 5 years ago

10.3390/nu11061425

Mixed Spices at Culinary Doses Have Prebiotic Effects in Healthy Adults: A Pilot Study
Cited by: 24
Author(s): Qing-Yi Lu, Anna Rasmussen, Jieping Yang, Ru-Po Lee, Jianjun Huang, Paul Shao, Catherine L. Carpenter, Irene Gilbuena, Gail Thames, Susanne M. Henning, David Heber, Zhaoping Li
Software Mentions: 4
Published: about 7 years ago

10.3390/genes7040013

Bioinformatics Analysis of MAPKKK Family Genes in Medicago truncatula
Cited by: 10
Author(s): Wei Li, Hanyun Xu, Ying Liu, Lili Song, Changhong Guo, Yongjun Shu
Software Mentions: 4
Published: over 10 years ago

10.3389/fphar.2019.00005

Exposure of Infants to Isoniazid via Breast Milk After Maternal Drug Intake of Recommended Doses Is Clinically Insignificant Irrespective of Metaboliser Status. A Physiologically-Based Pharmacokinetic (PBPK) Modelling Approach to Estimate Drug Exposure of Infants via Breast-Feeding
Cited by: 12
Author(s): Estella Dora Germaine Garessus, Hans Mielke, Ursula Gundert‐Remy
Software Mentions: 4
Published: over 7 years ago

10.3390/genes8110329

Flanking Variation Influences Rates of Stutter in Simple Repeats
Cited by: 19
Author(s): August E. Woerner, Jonathan L. King, Bruce Budowle
Software Mentions: 4
Published: almost 9 years ago

10.1186/s40168-020-00827-8

Disentangling the mechanisms shaping the surface ocean microbiota
Cited by: 131
Author(s): Ramiro Logares, Ina Maria Deutschmann, Pedro C. Junger, Caterina R. Giner, Anders K. Krabberød, Thomas Sebastian Benedikt Schmidt, Laura Rubinat-Ripoll, Mireia Mestre, Guillem Salazar, Clara Ruiz‐González, Marta Sebastián, Colomban de Vargas, Silvia G. Acinas, Carlos M. Duarte, Josep M. Gasol, Ramón Massana
Software Mentions: 4
Published: over 6 years ago

10.3390/genes10030233

The Patchy Distribution of Restriction–Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria
Cited by: 26
Author(s): Matthew S. Fullmer, Matthew Ouellette, Artemis S. Louyakis, R. Thane Papke, J. Peter Gogarten
Software Mentions: 4
Published: over 7 years ago

10.3389/fphar.2021.625543

The Synergistic Effects of 5-Aminosalicylic Acid and Vorinostat in the Treatment of Ulcerative Colitis
Cited by: 10
Author(s): Lina He, Shuting Wen, Zhuotai Zhong, Senhui Weng, Qilong Jiang, Hong Mi, Fengbin Liu
Software Mentions: 4
Published: over 5 years ago

10.12688/f1000research.27284.2

What are the long-term symptoms and complications of COVID-19: a protocol for a living systematic review
Cited by: 3
Author(s): Melina Michelen, Hung-Yuan Cheng, Lakshmi Manoharan, Natalie Elkheir, Andrew Dagens, Claire Hastie, Margaret O’Hara, Jake Suett, Dania Dahmash, Paulina Bugaeva, Ishmeala Rigby, Daniel Munblit, Eli Harriss, Amanda Burls, Carol Foote, Janet T. Scott, Gail Carson, Piero Olliaro, Louise Sigfrid, Charitini Stavropoulou
Software Mentions: 4
Published: almost 5 years ago

10.12688/f1000research.4510.2

Cytoscape tools for the web age: D3.js and Cytoscape.js exporters
Cited by: 38
Author(s): Keiichiro Ono, Barry Demchak, Trey Ideker
Software Mentions: 4
Published: almost 12 years ago

10.1038/srep23050

Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies
Cited by: 39
Author(s): Yuvraj Indoliya, Poonam Tiwari, Abhisekh Singh Chauhan, Ridhi Goel, Manju Shri, Sumit K. Bag, Debasis Chakrabarty
Software Mentions: 4
Published: over 10 years ago

10.1186/s40635-020-00335-x

Alkaline phosphatase in pulmonary inflammation—a translational study in ventilated critically ill patients and rats
Cited by: 6
Author(s): Jenny Juschten, Sarah A. Ingelse, Lieuwe D. J. Bos, Armand R. J. Girbes, Nicole P. Juffermans, Tom van der Poll, Marcus J. Schultz, Pieter R. Tuinman
Software Mentions: 4
Published: over 5 years ago

10.1002/2211-5463.13130

CCR7 and its related molecules may be potential biomarkers of pulmonary arterial hypertension
Cited by: 5
Author(s): Mengsi Cai, Xiuchun Li, Haoru Dong, Ying Wang, Xiaoying Huang
Software Mentions: 4
Published: over 5 years ago

10.3390/genes10090725

A Transcriptome Analysis Identifies Biological Pathways and Candidate Genes for Feed Efficiency in DLY Pigs
Cited by: 9
Author(s): Xingwang Wang, Shaoyun Li, Jie Wu, Rongrong Ding, Jianping Quan, Enqin Zheng, Jie Yang, Zhenfang Wu
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.ppat.1008502

Ablation of non-coding RNAs affects bovine leukemia virus B lymphocyte proliferation and abrogates oncogenesis
Cited by: 15
Author(s): Roghaiyeh Safari, Jean-Rock Jacques, Yves Brostaux, Luc Willems
Software Mentions: 4
Published: over 6 years ago

10.1093/femsec/fiab049

Factors influencing the biodiversity of three microbial groups within and among islands of the Baltic Sea
Cited by: 5
Author(s): Anette Teittinen, Leena Virta, Mingjia Li, Jianjun Wang
Software Mentions: 4
Published: over 5 years ago

10.3390/vaccines9070731

Sero-Monitoring of Horses Demonstrates the Equivac® HeV Hendra Virus Vaccine to Be Highly Effective in Inducing Neutralising Antibody Titres
Cited by: 8
Author(s): Kim Halpin, Kerryne Graham, Peter A. Durr
Software Mentions: 4
Published: about 5 years ago

10.1093/femsec/fix126

Community structure of rare methanogenic archaea: insight from a single functional group
Cited by: 15
Author(s): Shuai Yang, Matthias Winkel, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: almost 9 years ago

10.1093/iob/obab024

Increasing Viscosity Helps Explain Locomotor Control in Swimming Polypterus senegalus
Cited by: 7
Author(s): Keegan Lutek, Emily M. Standen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.ppat.1008236

The cervicovaginal mucus barrier to HIV-1 is diminished in bacterial vaginosis
Cited by: 45
Author(s): Thuy Hoang, Emily Toler, Kevin DeLong, Nomfuneko A. Mafunda, Seth M. Bloom, Hannah C. Zierden, Thomas R. Moench, Jenell S. Coleman, Justin Hanes, Douglas S. Kwon, Samuel K. Lai, Richard A. Cone, Laura M. Ensign
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.ppat.1008154

Disrupting MLV integrase:BET protein interaction biases integration into quiescent chromatin and delays but does not eliminate tumor activation in a MYC/Runx2 mouse model
Cited by: 10
Author(s): Lorenz M. Loyola, Vasudevan Achuthan, Kathryn Gilroy, Gillian Borland, Anna Kilbey, Nancy MacKay, Margaret Bell, Jodie Hay, Sriram Aiyer, Dylan Fingerman, Rodrigo A. Villanueva, Ewan R. Cameron, Christine A. Kozak, Alan Engelman, James C. Neil, Monica J. Roth
Software Mentions: 4
Published: over 6 years ago

10.3389/fped.2020.599638

Digital Simulation Improves, Maintains, and Helps Transfer Health-Care Providers' Neonatal Resuscitation Knowledge
Cited by: 6
Author(s): Simran K. Ghoman, Maria Cutumisu, Georg M. Schmölzer
Software Mentions: 4
Published: over 5 years ago

10.1111/irv.12574

Primary care influenza-like illness surveillance in Ho Chi Minh City, Vietnam 2013-2015
Cited by: 8
Author(s): Stacy Todd, Nguyễn Thị Cẩm Hường, Nguyen Thi Le Thanh, Nguyen Ha Thao Vy, Nguyễn Thành Hưng, Tran Thi Nhu Thao, Huynh Thi Phuong, H. Rogier van Doorn, Vu Thi Ty Hang, Nguyễn Văn Vĩnh Châu, Jonathan M. Read, David G. Lalloo, Maciej F. Boni
Software Mentions: 4
Published: about 8 years ago

10.1093/iob/obaa030

Metabolic Rates Predict Baseline Corticosterone and Reproductive Output in a Free-Living Passerine
Cited by: 5
Author(s): Blanca Jimeno, Mackenzie R. Prichard, Devin W Landry, Cole J. Wolf, Beau Larkin, Zachary A. Cheviron, Creagh W. Breuner
Software Mentions: 4
Published: over 6 years ago

10.3390/foods10081826

Bacterial Community of Grana Padano PDO Cheese and Generical Hard Cheeses: DNA Metabarcoding and DNA Metafingerprinting Analysis to Assess Similarities and Differences
Cited by: 6
Author(s): Miriam Zago, Lia Rossetti, Tommaso Bardelli, Domenico Carminati, Nelson Espinoza N., Giorgio Giraffa
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.606065

Identification of Hub Genes and Immune Infiltration in Psoriasis by Bioinformatics Method
Cited by: 8
Author(s): Wenxing Su, Yuqian Wei, Biao Huang, Jiang Ji
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-019-0715-5

Active eukaryotes in drinking water distribution systems of ground and surface waterworks
Cited by: 21
Author(s): Jenni Inkinen, Balamuralikrishna Jayaprakash, Sallamaari Siponen, Anna-Maria Hokajärvi, Anna Pursiainen, Jenni Ikonen, Ivan Ryzhikov, Martin Täubel, Ari Kauppinen, Jussi Paananen, Ilkka T. Miettinen, Eila Torvinen, Mikko Kolehmainen, Tarja Pitkänen
Software Mentions: 4
Published: about 7 years ago

10.3390/genes10120979

Transcriptome Analysis of the Cecal Tonsil of Jingxing Yellow Chickens Revealed the Mechanism of Differential Resistance to Salmonella
Cited by: 12
Author(s): Fei Wang, Jin Zhang, Bo Zhu, Jie Wang, Qiao Wang, Maiqing Zheng, Jie Wen, Qinghe Li, Guiping Zhao
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms20225775

Impact of Paraburkholderia phytofirmans PsJN on Grapevine Phenolic Metabolism
Cited by: 13
Author(s): Lidiane Miotto-Vilanova, Barbara Courteaux, Rosa Padilla, Fanja Rabenoelina, Cédric Jacquard, Christophe Clément, Gilles Comte, Céline Lavire, Essaïd Ait Barka, Isabelle Kerzaon, Lisa Sanchez
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2020.01242

Prokaryotic Response to Phytodetritus-Derived Organic Material in Epi- and Mesopelagic Antarctic Waters
Cited by: 6
Author(s): Vincenzo Manna, Francesca Malfatti, Elisa Banchi, Federica Cerino, Fabio De Pascale, Annalisa Franzo, Riccardo Schiavon, Alessandro Vezzi, Paola Del Negro, Mauro Celussi
Software Mentions: 4
Published: about 6 years ago

10.1093/gigascience/giy034

Improving the annotation of the Heterorhabditis bacteriophora genome
Cited by: 15
Author(s): Florence McLean, Duncan Berger, Dominik R. Laetsch, Hillel T. Schwartz, Mark Blaxter
Software Mentions: 4
Published: over 8 years ago

10.1093/gigascience/gix058

Connections between the human gut microbiome and gestational diabetes mellitus
Cited by: 178
Author(s): Yashu Kuang, Jinhua Lu, Shenghui Li, Junhua Li, Mingyang Yuan, Jianxing He, Niannian Chen, Wan-Qing Xiao, Shi‐Li Shen, Lan Qiu, Yongming Wu, Cui-Yue Hu, Yanyan Wu, Weidong Li, Qiaozhu Chen, Hong‐Wen Deng, Christopher J. Papasian, Huimin Xia, Xiu Qiu
Software Mentions: 4
Published: about 9 years ago

10.1186/s13742-016-0150-5

The preprocessed connectomes project repository of manually corrected skull-stripped T1-weighted anatomical MRI data
Cited by: 35
Author(s): Benjamin Puccio, James Pooley, John Pellman, Elise C. Taverna, R. Cameron Craddock
Software Mentions: 4
Published: almost 10 years ago

10.1016/j.gpb.2020.06.004

The mRNA Binding Proteome of Proliferating and Differentiated Muscle Cells
Cited by: 4
Author(s): Monika Hiller, M Geissler, George M.C. Janssen, Peter A. van Veelen, Annemieke Aartsma‐Rus, Pietro Spitali
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2020.589168

NFATC2 Modulates Radiation Sensitivity in Dermal Fibroblasts From Patients With Severe Side Effects of Radiotherapy
Cited by: 0
Author(s): Joshua Dulong, Clara Kouakou, Yasmina Mesloub, Julie Rorteau, Sandra Moratille, Fabien Chevalier, Tatiana Vinasco-Sandoval, Michèle Martin, Jérôme Lamartine
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.592811

Exploration of the Prognostic and Immunotherapeutic Value of B and T Lymphocyte Attenuator in Skin Cutaneous Melanoma
Cited by: 6
Author(s): Xubin Dong, Jingjing Song, Buran Chen, Yufeng Qi, Wenjie Jiang, Huihui Li, Danni Zheng, Yinghao Wang, Xiaohua Zhang, Haiguang Liu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.650828

Integrative Analysis of a Novel Eleven-Small Nucleolar RNA Prognostic Signature in Patients With Lower Grade Glioma
Cited by: 6
Author(s): Teng Deng, Yizhen Gong, Xiwen Liao, Xiangkun Wang, Xin Zhou, Guangzhi Zhu, Ligen Mo
Software Mentions: 4
Published: about 5 years ago

10.5808/GI.2020.18.1.e6

Strong concordance between RNA structural and single nucleotide variants identified via next generation sequencing techniques in primary pediatric leukemia and patient-derived xenograft samples
Cited by: 2
Author(s): Sonali P. Barwe, Anilkumar Gopalakrisnapillai, Nitin Mahajan, Todd E. Druley, E. Anders Kolb, Erin L. Crowgey
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2020.609601

Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
Cited by: 4
Author(s): Dingdong He, Xiaokang Zhang, Xinyu Zhu, Narayani Maharjan, Yingchao Wang, Ping Luo, Chunzi Liang, Jiancheng Tu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.580750

Assessment of Prognostic Value of Cystic Features in Glioblastoma Relative to Sex and Treatment With Standard-of-Care
Cited by: 10
Author(s): Lee Curtin, Paula Whitmire, Cassandra R. Rickertsen, Gina L. Mazza, Peter Canoll, Sandra K. Johnston, Maciej M. Mrugala, Kristin R. Swanson, Leland Hu
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13073-021-00948-1

An epigenetic and transcriptomic signature of immune tolerance in human monocytes through multi-omics integration
Cited by: 9
Author(s): Xanthe Brands, Bastiaan W. Haak, Augustijn M. Klarenbeek, Joe Butler, Fabrice Uhel, Wanhai Qin, Natasja A. Otto, Marja E. Jakobs, Daniel Faber, René Lutter, W. Joost Wiersinga, Tom van der Poll, Brendon P. Scicluna
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9091876

The Terrestrial Plastisphere: Diversity and Polymer-Colonizing Potential of Plastic-Associated Microbial Communities in Soil
Cited by: 21
Author(s): Joana MacLean, Sathish Mayanna, Liane G. Benning, Fabian Horn, Alexander Bartholomäus, Yosri Wiesner, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: almost 5 years ago

10.3390/microorganisms9081595

Habitats Are More Important Than Seasons in Shaping Soil Bacterial Communities on the Qinghai-Tibetan Plateau
Cited by: 7
Author(s): Rui Wang, Wei Miao, Jing Wang, Yongjun Lin
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2021.616149

Prognostic Impact of Radiological Consolidation Tumor Ratio in Clinical Stage IA Pulmonary Ground Glass Opacities
Cited by: 21
Author(s): Junjie Xi, Jiacheng Yin, Jiaqi Liang, Cheng Zhan, Wei Jiang, Lin Zhang, Songtao Xu, Qun Wang
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.586820

Tumor Derived SIGLEC Family Genes May Play Roles in Tumor Genesis, Progression, and Immune Microenvironment Regulation
Cited by: 14
Author(s): Chen Zheng, Ming Yu, Lei Guo, Bo Zhang, Shuang Liu, Wentao Zhang, Bing Zhou, Jiuliang Yan, Qianni Ma, Zhixu Yang, Xiao Ye, Yongfeng Xu, Hui Li, Qing–Hai Ye
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2020.01658

Circulating Tumor Cells Expressing the Prostate Specific Membrane Antigen (PSMA) Indicate Worse Outcome in Primary, Non-Metastatic Triple-Negative Breast Cancer
Cited by: 14
Author(s): Sabine Kasimir‐Bauer, Corinna Keup, Oliver Hoffmann, Siegfried Hauch, Rainer Kimmig, Ann‐Kathrin Bittner
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.716921

HNRNPA2B1, as a m6A Reader, Promotes Tumorigenesis and Metastasis of Oral Squamous Cell Carcinoma
Cited by: 22
Author(s): Feiya Zhu, Tianru Yang, Meiling Yao, Ting Shen, Changyun Fang
Software Mentions: 4
Published: almost 5 years ago

10.1084/jem.20190430

An anti-CRF antibody suppresses the HPA axis and reverses stress-induced phenotypes
Cited by: 7
Author(s): Hunter S. Futch, Karen N. McFarland, Brenda D. Moore, M. Zino Kuhn, Benoit I. Giasson, Thomas B. Ladd, Karen A. Scott, Melanie R. Shapiro, Rachel L. Nosacka, Marshall S. Goodwin, Yong Ran, Pedro Cruz, Doojin Ryu, Cara L. Croft, Yona Levites, Christopher Janus, Paramita Chakrabarty, Andrew R. Judge, Todd M. Brusko, Annette D. de Kloet, Eric G. Krause, Todd E. Golde
Software Mentions: 4
Published: almost 7 years ago

10.3389/fonc.2021.620200

Methylation Regulation of TLR3 on Immune Parameters in Lung Adenocarcinoma
Cited by: 3
Author(s): Ang Li, Hongjiao Wu, Quan Tian, Yi Zhang, Zhi Zhang, Xuemei Zhang
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms7110502

The Human Milk Microbiota is Modulated by Maternal Diet
Cited by: 54
Author(s): Marina Padilha, Niels Banhos Danneskiold‐Samsøe, Asker Brejnrod, Christian Hoffmann, Vanessa Pereira Cabral, Julia de Melo Iaucci, Cristiane Hermes Sales, Regina Mara Fisberg, Ramon V. Cortez, Susanne Brix, Carla Romano Taddei, Karsten Kristiansen, Susana Marta Isay Saad
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms8010008

Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont
Cited by: 22
Author(s): Monica M. Sheffer, Gabriele Uhl, Stefan Prost, Tillmann Lueders, Tim Urich, Mia M. Bengtsson
Software Mentions: 4
Published: over 6 years ago

10.1084/jem.20170412

A multidimensional blood stimulation assay reveals immune alterations underlying systemic juvenile idiopathic arthritis
Cited by: 43
Author(s): Alma-Martina Cepika, Romain Banchereau, Élodie Segura, Marina Ohouo, Brandi L. Cantarel, Kristina Goller, V. Ashley Cantrell, Emily Ruchaud, Elizabeth Gatewood, Phuong Nguyen, Jin Gu, Esperanza Anguiano, Sandra Zurawski, Jeanine Baisch, Marilynn Punaro, Nicole Baldwin, Gerlinde Obermoser, Karolina Palucka, Jacques Banchereau, Sebastián Amigorena, Virginia Pascual
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13073-021-00826-w

Comprehensive molecular characterization of gastric cancer patients from phase II second-line ramucirumab plus paclitaxel therapy trial
Cited by: 16
Author(s): Seung Tae Kim, K. Jason, Sung Yong Oh, Kyung Kim, Jung Yong Hong, Won Ki Kang, Jeeyun Lee
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9020221

The Interplay between Campylobacter and the Caecal Microbial Community of Commercial Broiler Chickens over Time
Cited by: 9
Author(s): Ilaria Patuzzi, Massimiliano Orsini, Veronica Cibin, Sara Petrin, Eleonora Mastrorilli, Alessia Tiengo, Federica Gobbo, Salvatore Catania, Lisa Barco, Antonia Ricci, Carmen Losasso
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2018.00095

CDKN2A Copy Number Loss Is an Independent Prognostic Factor in HPV-Negative Head and Neck Squamous Cell Carcinoma
Cited by: 35
Author(s): William S. Chen, Ranjit S. Bindra, Allen Mo, Thomas J. Hayman, Zain Husain, Joseph N. Contessa, Stephen G. Gaffney, Jeffrey P. Townsend, James B. Yu
Software Mentions: 4
Published: over 8 years ago

10.3389/fonc.2021.633899

High BLM Expression Predicts Poor Clinical Outcome and Contributes to Malignant Progression in Human Cholangiocarcinoma
Cited by: 7
Author(s): Xiaoqiang Du, Chen Zhang, Chuanzheng Yin, Wenjie Wang, Xueke Yan, Dawei Xie, Xichuan Zheng, Qi Zheng, Min Li, Zifang Song
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00615

Long Non-coding RNA LINC02195 as a Regulator of MHC I Molecules and Favorable Prognostic Marker for Head and Neck Squamous Cell Carcinoma
Cited by: 29
Author(s): Hao Li, Hong‐Gang Xiong, Yao Xiao, Qi‐Chao Yang, Shao‐Chen Yang, Hongchao Tang, Wenfeng Zhang, Zhi‐Jun Sun
Software Mentions: 4
Published: over 6 years ago

10.1186/s13073-020-00824-4

The identification of novel immunogenic antigens as potential Shigella vaccine components
Cited by: 8
Author(s): Ruklanthi de Alwis, Li Liang, Omid Taghavian, Emma Werner, Trang Nguyen Hoang Thu, Vu Thuy Duong, D. Huw Davies, Philip L. Felgner, Stephen Baker
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00750

Incidence, Prognostic Factors and Survival Outcome in Patients With Primary Hepatic Lymphoma
Cited by: 8
Author(s): Shilong Zhang, Chen Chen, Qianwen Rao, Zhe Guo, Xin Wang, Zhiming Wang, Li‐Shun Wang
Software Mentions: 4
Published: over 6 years ago

10.1042/BSR20203459

CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
Cited by: 10
Author(s): Xiaojing Qin, Lin Xu, Guoqiang Xue, Huiying Fan, Haoyu Wang, Jing Wu, Da Pei
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.688882

MiR-1236-3p Inhibits the Proliferation, Invasion, and Migration of Colon Cancer Cells and Hinders Epithelial-Mesenchymal Transition by Targeting DCLK3
Cited by: 9
Author(s): Yang Zhao, Hongyi Zhou, Jie Shen, Shaohui Yang, Ke Deng, Qi Li, Wei Cui
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2021.720125

Identification of the Prognosis Value and Potential Mechanism of Immune Checkpoints in Renal Clear Cell Carcinoma Microenvironment
Cited by: 18
Author(s): Guodong Liao, Ping Wang, Yuyong Wang
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.569985

Diverse Macrophage Populations Contribute to the Inflammatory Microenvironment in Premalignant Lesions During Localized Invasion
Cited by: 16
Author(s): Ayman Ibrahim, Matthew Moss, Zane Gray, Michelle D. Rojo, Caitlin M. Burke, Kathryn L. Schwertfeger, Camila O. dos Santos, Heather L. Machado
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.636632

Long Noncoding RNA NONHSAT079852.2 Contributes to GBM Recurrence by Functioning as a ceRNA for has-mir-10401-3p to Facilitate HSPA1A Upregulation
Cited by: 3
Author(s): Ningning Zhao, Jiajie Zhang, Lili Zhao, Xiaoni Fu, Qian Zhao, Min Chao, Haiyan Cao, Yang Jiao, Yibo Hu, Chao Chen, Liang Wang, Huijuan Wang
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms22116101

Loss of Nnt Increases Expression of Oxidative Phosphorylation Complexes in C57BL/6J Hearts
Cited by: 4
Author(s): Jack Williams, Charlotte Hall, Eirini Meimaridou, Louise A. Metherell
Software Mentions: 4
Published: about 5 years ago

10.1186/s13046-021-02122-2

Mutant NPM1-regulated lncRNA HOTAIRM1 promotes leukemia cell autophagy and proliferation by targeting EGR1 and ULK3
Cited by: 19
Author(s): Yipei Jing, Xueke Jiang, Lei Li, Meixi Peng, Jun Ren, Qiaoling Xiao, Tao Yao, Yonghong Tao, Junpeng Huang, Lu Wang, Yuting Tang, Zailin Yang, Yang Zhou, Ling Zhang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpls.2020.567249

Molecular Mechanism Underlying Derepressed Male Production in Hexaploid Persimmon
Cited by: 7
Author(s): Kanae Masuda, Naoko Fujita, Ho Wen Yang, Koichiro Ushijima, Yasutaka Kubo, Ryutaro Tao, Takashi Akagi
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyg.2019.00697

Ipsilesional Impairments of Visual Awareness After Right-Hemispheric Stroke
Cited by: 8
Author(s): Mario Bonato, Zaira Romeo, Elvio Blini, Marco Pitteri, Eugenia Durgoni, Laura Passarini, Francesca Meneghello, Marco Zorzi
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2020.00993

Plant Microbiomes: Do Different Preservation Approaches and Primer Sets Alter Our Capacity to Assess Microbial Diversity and Community Composition?
Cited by: 14
Author(s): Zhiguang Qiu, Juntao Wang, Manuel Delgado‐Baquerizo, Pankaj Trivedi, Eleonora Egidi, Yi-Min Chen, Haiyang Zhang, Brajesh K. Singh
Software Mentions: 4
Published: about 6 years ago

10.3389/fpsyg.2019.01566

Parallels in Processing Boundary Cues in Speech and Action
Cited by: 4
Author(s): Matt Hilton, Romy Räling, Isabell Wartenburger, Birgit Elsner
Software Mentions: 4
Published: about 7 years ago

10.3389/fpsyg.2020.00947

bayes4psy—An Open Source R Package for Bayesian Statistics in Psychology
Cited by: 3
Author(s): Jure Demšar, Grega Repovš, Erik Štrumbelj
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2020.588739

Temperature Shift Between Vineyards Modulates Berry Phenology and Primary Metabolism in a Varietal Collection of Wine Grapevine
Cited by: 16
Author(s): Kelem Gashu, Noga Sikron Persi, Elyashiv Drori, Eran Harcavi, Nurit Agam, Amnon Bustan, Aaron Fait
Software Mentions: 4
Published: over 5 years ago

10.1042/BSR20203020

Network-based approach to identify prognosis-related genes in tamoxifen-treated patients with estrogen receptor-positive breast cancer
Cited by: 4
Author(s): Yanyan Wang, Xiaonan Gong, Yujie Zhang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpsyg.2021.639448

The Association Between Emotion Regulation, Physiological Arousal, and Performance in Math Anxiety
Cited by: 20
Author(s): Rachel Pizzie, David J. M. Kraemer
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyg.2020.579346

Talking to Cows: Reactions to Different Auditory Stimuli During Gentle Human-Animal Interactions
Cited by: 9
Author(s): Annika Lange, Lisa Bauer, Andreas Futschik, Susanne Waiblinger, Stephanie Lürzel
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2018.00874

Differential Effects of Climate Warming on the Nectar Secretion of Early- and Late-Flowering Mediterranean Plants
Cited by: 47
Author(s): Krista Takkis, Thomas Tscheulin, Theodora Petanidou
Software Mentions: 4
Published: about 8 years ago

10.3389/fpls.2020.00574

Decoding Gene Networks Modules That Explain the Recovery of Hymenoglossum cruentum Cav. After Extreme Desiccation
Cited by: 6
Author(s): Enrique Ostria‐Gallardo, Giovanni Larama, Graciela Berríos, Ana Fallard, Ana Gutiérrez-Moraga, Ingo Ensminger, Patrício Manque, Luisa Bascuñán‐Godoy, León A. Bravo
Software Mentions: 4
Published: over 6 years ago

10.3389/fpsyg.2017.01135

Interpersonal Movement Synchrony Responds to High- and Low-Level Conversational Constraints
Cited by: 44
Author(s): Alexandra Paxton, Rick Dale
Software Mentions: 4
Published: about 9 years ago

10.3390/microorganisms9061310

Meropenem Pharmacokinetics and Target Attainment in Critically Ill Patients Are Not Affected by Extracorporeal Membrane Oxygenation: A Matched Cohort Analysis
Cited by: 12
Author(s): Matthias Gijsen, Erwin Dreesen, Pieter Annaert, Johan Nicolaï, Yves Debaveye, Joost Wauters, Isabel Spriet
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8111729

A Large-Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity Regimes
Cited by: 7
Author(s): Kshitij Tandon, Bayanmunkh Baatar, Pei‐Wen Chiang, Dashdondog Narangarvuu, Bolormaa Oyuntsetseg, Sen‐Lin Tang
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13046-021-02092-5

Activin-A impedes the establishment of CD4+ T cell exhaustion and enhances anti-tumor immunity in the lung
Cited by: 5
Author(s): Ioannis Morianos, Aikaterini Tsitsopoulou, Konstantinos Potaris, Dimitrios Valakos, Ourania Fari, Giannis Vatsellas, Clementine Bostantzoglou, Andreas Photiades, Mina Gaga, Georgina Xanthou, Maria Semitekolou
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpsyg.2021.705668

Spoken Word Segmentation in First and Second Language: When ERP and Behavioral Measures Diverge
Cited by: 2
Author(s): Annie C. Gilbert, Jasmine G. Lee, Kristina Coulter, Max Wolpert, Shanna Kousaie, Vincent L. Gracco, Denise Klein, Debra Titone, Natalie A. Phillips, Shari R. Baum
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpls.2017.01465

Changes in Species Diversity Patterns and Spatial Heterogeneity during the Secondary Succession of Grassland Vegetation on the Loess Plateau, China
Cited by: 28
Author(s): Caili Sun, Zongzheng Chai, Guobin Liu, Sha Xue
Software Mentions: 4
Published: almost 9 years ago

10.3389/fpls.2021.628960

Responses of Maize Internode to Water Deficit Are Different at the Biochemical and Histological Levels
Cited by: 2
Author(s): Fadi El Hage, Laëtitia Virlouvet, Paul-Louis Lopez-Marnet, Yves Griveau, Marie‐Pierre Jacquemot, Sylvie Coursol, Valérie Méchin, Matthieu Reymond
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.716750

Differentially Amplified Repetitive Sequences Among Aegilops tauschii Subspecies and Genotypes
Cited by: 3
Author(s): Rahman Ebrahimzadegan, Fatemeh Orooji, Pengtao Ma, Ghader Mirzaghaderi
Software Mentions: 4
Published: about 5 years ago

10.3389/fpsyt.2021.617997

Multisite Comparison of MRI Defacing Software Across Multiple Cohorts
Cited by: 25
Author(s): Athena Theyers, Mojdeh Zamyadi, Mark F. O’Reilly, Robert Bartha, Sean Symons, Glenda MacQueen, Stefanie Hassel, Jason P. Lerch, Evdokia Anagnostou, Raymond W. Lam, Benício N. Frey, Roumen Milev, Daniel J. Müller, Sidney H. Kennedy, Christopher J. Scott, Stephen C. Strother, Stephen R. Arnott
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyt.2020.00052

Lower Serum Uric Acid Is Associated With Post-Stroke Depression at Discharge
Cited by: 14
Author(s): Li Guo, Jinfeng Miao, Wenzhe Sun, Xiaoyan Song, Yan Lan, Xin Zhao, Xiuli Qiu, Chenyan Zhang, Zhou Zhu, Suiqiang Zhu
Software Mentions: 4
Published: over 6 years ago

10.1042/BSR20201427

Mining novel cell glycolysis related gene markers that can predict the survival of colon adenocarcinoma patients
Cited by: 16
Author(s): Sihan Chen, Guodong Cao, Wei Wu, Yida Lu, Xueling He, Lei Yang, Ke Chen, Bo Chen, Maoming Xiong
Software Mentions: 4
Published: about 6 years ago

10.1186/s13046-019-1403-9

IFN-gamma-induced PD-L1 expression in melanoma depends on p53 expression
Cited by: 93
Author(s): Alexander Thiem, Sonja Hesbacher, Hermann Kneitz, Teresa di Primio, Markus V. Heppt, Heike M. Hermanns, Matthias Goebeler, Svenja Meierjohann, Roland Houben, David Schrama
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13046-019-1228-6

Extracellular lipid loading augments hypoxic paracrine signaling and promotes glioma angiogenesis and macrophage infiltration
Cited by: 18
Author(s): Svenja Offer, Julien A. Menard, Julio Enríquez Pérez, Kelin Gonçalves de Oliveira, Vineesh Indira Chandran, Martin Johansson, Anna Bång-Rudenstam, Peter Siesjö, Anna Ebbesson, Ingrid Hedenfalk, Pia C. Sundgren, Anna Darabi, Mattias Belting
Software Mentions: 4
Published: about 7 years ago

10.3390/microorganisms7100441

Changes in the Bacterioplankton Community Structure from Southern Gulf of Mexico During a Simulated Crude Oil Spill at Mesocosm Scale
Cited by: 17
Author(s): Sonia S. Valencia-Agami, Daniel Cerqueda‐García, S. Putzeys, María Magdalena Uribe-Flores, Ulises García-Cruz, Daniel Pech, Jorge A. Herrera-Silveira, M. Leopoldina Aguirre-Macedo, José Q. García-Maldonado
Software Mentions: 4
Published: almost 7 years ago

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Papers Mentioning ggplot2 11,441