cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s40104-021-00545-7

Evaluation of curcumin and copper acetate against Salmonella Typhimurium infection, intestinal permeability, and cecal microbiota composition in broiler chickens
Cited by: 20
Author(s): Anaisa A. Leyva-Diaz, Daniel Hernández-Patlán, Bruno Solís-Cruz, Bishnu Adhikari, Young Min Kwon, Juan D. Latorre, Xóchitl Hernández-Velasco, Benjamín Fuente-Martínez, Billy M. Hargis, Raquel López‐Arellano, Guillermo Téllez–Isaías
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0232372

Clinical feasibility of ultrafast intracranial vessel imaging with non-Cartesian spiral 3D time-of-flight MR angiography at 1.5T: An intra-individual comparison study
Cited by: 10
Author(s): Thomas Sartoretti, Elisabeth Sartoretti, Árpád Schwenk, Luuk van Smoorenburg, Manoj Mannil, André Euler, Anton S. Becker, Alex Alfieri, Arash Najafi, Christoph A. Binkert, Michael Wyss, Sabine Sartoretti‐Schefer
Software Mentions: 4
Published: about 6 years ago

10.3389/fmolb.2021.703307

A Potential circRNA-miRNA-mRNA Regulatory Network in Asthmatic Airway Epithelial Cells Identified by Integrated Analysis of Microarray Datasets
Cited by: 7
Author(s): Dian Chen, Wenliang Wu, Lingling Yi, Yuchen Feng, Chenli Chang, Shengchong Chen, Jiali Gao, Gongqi Chen, Guohua Zhen
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12918-018-0596-4

Single molecules can operate as primitive biological sensors, switches and oscillators
Cited by: 10
Author(s): Rosa D. Hernansaiz-Ballesteros, Luca Cardelli, Attila Csikász‐Nagy
Software Mentions: 4
Published: about 8 years ago

10.3389/fmolb.2021.715215

Decoding Partner Specificity of Opioid Receptor Family
Cited by: 3
Author(s): Carlos Barreto, Salete J. Baptista, António Preto, Daniel Silvério, Rita Melo, Irina S. Moreira
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13071-020-04114-1

The tree that hides the forest: cryptic diversity and phylogenetic relationships in the Palaearctic vector Obsoletus/Scoticus Complex (Diptera: Ceratopogonidae) at the European level
Cited by: 12
Author(s): Antoine Mignotte, Claire Garros, Laëtitia Gardès, Thomas Balenghien, Maxime Duhayon, Ignace Rakotoarivony, Laura Tabourin, Léa Poujol, Bruno Mathieu, Adolfo Ibáñez-Justicia, Ahmet Deniz, Aleksandar Cvetkovikj, Bethan V. Purse, David W. Ramilo, Despoina Stougiou, Doreen Werner, Dubravka Pudar, Dušan Petrić, Eva Veronesi, Frans Jacobs, Helge Kampen, Isabel Pereira da Fonseca, Javier Lucientes, J. Nelson Navarro, Josué Martínez de la Puente, Jovana Stefanovska, Kate R. Searle, Khalid Khallaayoune, C. Lorna Culverwell, Magdalena Larska, Maria Bourquia, Maria Goffredo, Marina Bisia, Marion England, Matthew Robin, Michela Quaglia, Miguel Ángel Miranda, René Bødker, Rosa Estrada-Peña, Simon Carpenter, Simona Tchakarova, Sofia Boutsini, Ståle Sviland, Stefanie Schäfer, Zanda Ozoliņa, Zanda Segliņa, Zati Vatansever, Karine Huber
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00211-17

Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese
Cited by: 55
Author(s): Andrea S. Bertuzzi, Aaron M. Walsh, Jeremiah J. Sheehan, Paul D. Cotter, Fiona Crispie, P.L.H. McSweeney, Kieran N. Kilcawley, Mary C. Rea
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0249540

Water sprinkling as a tool for heat abatement in farmed Iberian red deer: Effects on calf growth and behaviour
Cited by: 2
Author(s): F. Javier Pérez‐Barbería, I Arroyo-González, Andrés J. García, Martina Pérez Serrano, Laureano Gallego, Tomás Landete‐Castillejos
Software Mentions: 4
Published: about 5 years ago

10.1186/s12870-019-2055-9

Metabolite profiling during graft union formation reveals the reprogramming of primary metabolism and the induction of stilbene synthesis at the graft interface in grapevine
Cited by: 25
Author(s): Duyên Prodhomme, Josep Valls, Cyril Hévin, Céline Franc, Ghislaine Hilbert, Gilles de Revel, Tristan Richard, Nathalie Ollat, Sarah Jane Cookson
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0255738

Adenomatous Polyposis Coli loss controls cell cycle regulators and response to paclitaxel in MDA-MB-157 metaplastic breast cancer cells
Cited by: 3
Author(s): Emily Astarita, Sara Maloney, Camden A. Hoover, Bronwyn J. Berkeley, Monica K. VanKlompenberg, T. Murlidharan Nair, Jenifer R. Prosperi
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-78841-x

Gravettian cranial morphology and human group affinities during the European Upper Palaeolithic
Cited by: 6
Author(s): Aurélien Mounier, Yann Heuzé, Mathilde Samsel, Sergey Vasilyev, Laurent Klaric, Sébastien Villotte
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78773-6

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome
Cited by: 28
Author(s): Min Yap, Conor Feehily, Calum J. Walsh, Mark A. Fenelon, Eileen F. Murphy, Fionnuala M. McAuliffe, Douwe van Sinderen, Paul W. O’Toole, Órla O’Sullivan, Paul D. Cotter
Software Mentions: 4
Published: over 5 years ago

10.1038/s41389-020-00245-3

Histoepigenetic analysis of the mesothelin network within pancreatic ductal adenocarcinoma cells reveals regulation of retinoic acid receptor gamma and AKT by mesothelin
Cited by: 6
Author(s): Eugene Lurie, Dongliang Liu, Emily L. LaPlante, Lillian R Thistlethwaite, Qizhi Yao, Aleksandar Milosavljevic
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0201657

“In a tree by the brook, there’s a songbird who sings”: Woodlands in an agricultural matrix maintain functionality of a wintering bird community
Cited by: 5
Author(s): Biang La Nam Syiem, Varun R. Goswami, Divya Vasudev
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12864-019-6235-7

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
Cited by: 5
Author(s): Claire Khosravi, Joanna E. Kowalczyk, Tania Chroumpi, Evy Battaglia, María Victoria Aguilar Pontes, Mao Peng, Ad Wiebenga, Vivian Ng, Anna Lipzen, Guifen He, Diane Bauer, Igor V. Grigoriev, Ronald P. de Vries
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-021-07503-7

The molecular signatures of compatible and incompatible pollination in Arabidopsis
Cited by: 9
Author(s): Chie Kodera, Jérémy Just, Martine Da Rocha, Antoine Larrieu, Lucie Riglet, Jonathan Legrand, Frédérique Rozier, Thierry Gaude, Isabelle Fobis-Loisy
Software Mentions: 4
Published: about 5 years ago

10.1111/1365-2656.13293

Urbanization can increase the invasive potential of alien species
Cited by: 31
Author(s): Piatã Santana Marques, Luisa Resende Manna, Therese C. Frauendorf, Eugênia Zandonà, Rosana Mazzoni, Rana W. El‐Sabaawi
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12917-018-1505-1

The value of necropsy reports for animal health surveillance
Cited by: 18
Author(s): Susanne Küker, Céline Faverjon, Lenz Furrer, John Berezowski, Horst Posthaus, Fabio Rinaldi, Flavie Vial
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0185087

A novel molecular toolkit for rapid detection of the pathogen and primary vector of thousand cankers disease
Cited by: 20
Author(s): Emel Ören, William E. Klingeman, Romina Gazis, John K. Moulton, Paris Lambdin, Mark V. Coggeshall, Jiří Hulcr, Steven J. Seybold, Ðenita Hadziabdic
Software Mentions: 4
Published: over 8 years ago

10.1007/s11306-017-1259-y

Non-invasive real time monitoring of yeast volatilome by PTR-ToF-MS
Cited by: 20
Author(s): Iuliia Khomenko, Irene Stefanini, Luca Cappellin, Valentina Cappelletti, Pietro Franceschi, Duccio Cavalieri, T.D. Märk, Franco Biasioli
Software Mentions: 4
Published: almost 9 years ago

10.3389/fonc.2020.589168

NFATC2 Modulates Radiation Sensitivity in Dermal Fibroblasts From Patients With Severe Side Effects of Radiotherapy
Cited by: 0
Author(s): Joshua Dulong, Clara Kouakou, Yasmina Mesloub, Julie Rorteau, Sandra Moratille, Fabien Chevalier, Tatiana Vinasco-Sandoval, Michèle Martin, Jérôme Lamartine
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78589-4

GRAS-Di system facilitates high-density genetic map construction and QTL identification in recombinant inbred lines of the wheat progenitor Aegilops tauschii
Cited by: 16
Author(s): Yuka Miki, Kentaro Yoshida, Hiroyuki Enoki, Saburô Kômura, Kazuko Suzuki, Minoru Inamori, Ryo Nishijima, Shigeo Takumi
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.592811

Exploration of the Prognostic and Immunotherapeutic Value of B and T Lymphocyte Attenuator in Skin Cutaneous Melanoma
Cited by: 6
Author(s): Xubin Dong, Jingjing Song, Buran Chen, Yufeng Qi, Wenjie Jiang, Huihui Li, Danni Zheng, Yinghao Wang, Xiaohua Zhang, Haiguang Liu
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-014-0254-y

Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans
Cited by: 77
Author(s): Dharani Dhar Burra, Oliver Berkowitz, Pete E. Hedley, Jenny Morris, Svante Resjö, Fredrik Levander, Erland Liljeroth, Erik Andréasson, Erik Alexandersson
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0229873

Development of a methodology to make individual estimates of the precision of liquid chromatography-tandem mass spectrometry drug assay results for use in population pharmacokinetic modeling and the optimization of dosage regimens
Cited by: 7
Author(s): Gellért Balázs Karvaly, Michael Neely, K Kovács, István Vincze, Barna Vásárhelyi, Roger W. Jelliffe
Software Mentions: 4
Published: over 6 years ago

10.3390/nu11051135

Safety of Hyaluronan 35 in Healthy Human Subjects: A Pilot Study
Cited by: 8
Author(s): Annette Bellar, Sean P. Kessler, Dana R. Obery, Naseer Sangwan, Nicole Welch, Laura E. Nagy, Srinivasan Dasarathy, Carol de la Motte
Software Mentions: 4
Published: about 7 years ago

10.3389/fonc.2021.650828

Integrative Analysis of a Novel Eleven-Small Nucleolar RNA Prognostic Signature in Patients With Lower Grade Glioma
Cited by: 6
Author(s): Teng Deng, Yizhen Gong, Xiwen Liao, Xiangkun Wang, Xin Zhou, Guangzhi Zhu, Ligen Mo
Software Mentions: 4
Published: about 5 years ago

10.1186/s12870-020-02518-w

Plastome phylogenomic study of Gentianeae (Gentianaceae): widespread gene tree discordance and its association with evolutionary rate heterogeneity of plastid genes
Cited by: 27
Author(s): Xu Zhang, Yanxia Sun, Jacob B. Landis, Zhenyu Lv, Jun Shen, Huajie Zhang, Nan Lin, Lijuan Li, Jiao Sun, Tao Deng, Hang Sun, Hengchang Wang
Software Mentions: 4
Published: almost 6 years ago

10.1111/joa.13188

Anatomy of avian rictal bristles in Caprimulgiformes reveals reduced tactile function in open‐habitat, partially diurnal foraging species
Cited by: 5
Author(s): Mariane G. Delaunay, Carl Larsen, Huw Lloyd, Matthew Sullivan, Robyn A. Grant
Software Mentions: 4
Published: over 6 years ago

10.1128/mSystems.00133-16

SSUnique: Detecting Sequence Novelty in Microbiome Surveys
Cited by: 4
Author(s): Michael D. J. Lynch, Josh D. Neufeld
Software Mentions: 4
Published: over 9 years ago

10.1186/s13071-021-04787-2

Ecology, seasonality and host preferences of Austrian Phlebotomus (Transphlebotomus) mascittii Grassi, 1908, populations
Cited by: 5
Author(s): Edwin Kniha, Markus Milchram, Vít Dvořák, Petr Halada, Adelheid G. Obwaller, Wolfgang Poeppl, Gerhard Mooseder, Petr Volf, Julia Walochnik
Software Mentions: 4
Published: about 5 years ago

10.1186/s13059-016-1014-0

The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum
Cited by: 83
Author(s): Evelien M. Bunnik, Gayani Batugedara, Anita Saraf, Jacques Prudhomme, Laurence Florens, Karine G. Le Roch
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0251121

Melanocytes determine angiogenesis gene expression across human tissues
Cited by: 3
Author(s): Shirly Freilikhman, Marianna Halasi, Alal Eran, Irit Adini
Software Mentions: 4
Published: about 5 years ago

10.1186/s40560-020-00495-8

Linkage of alterations in systemic iron homeostasis to patients’ outcome in sepsis: a prospective study
Cited by: 26
Author(s): Anna Brandtner, Piotr Tymoszuk, Manfred Nairz, Georg Lehner, Gernot Fritsche, Anja Vales, Andreas Falkner, Harald Schennach, Igor Theurl, Michael Joannidis, Günter Weiß, Christa Pfeifhofer-Obermair
Software Mentions: 4
Published: over 5 years ago

10.1186/s12917-018-1406-3

Dynamic network measures reveal the impact of cattle markets and alpine summering on the risk of epidemic outbreaks in the Swiss cattle population
Cited by: 21
Author(s): Beatriz Vidondo, Bernhard Voelkl
Software Mentions: 4
Published: over 8 years ago

10.1177/0885066618772498

Lower Respiratory Tract Infection and Short-Term Outcome in Patients With Acute Respiratory Distress Syndrome
Cited by: 12
Author(s): Fernando G. Zampieri, Pedro Póvoa, Jorge I. Salluh, Alejandro Rodríguez, Sandrine Valade, José Andrade Gomes, Jean Reignier, Elena Molinos, Jordi Almirall, Nicolas Boussekey, Lorenzo Socías, Paula Ramírez, William N. Viana, Anahita Rouzé, Saad Nseir, Ignacio Martín‐Loeches
Software Mentions: 4
Published: about 8 years ago

10.1007/s10840-019-00596-x

Needle aspiration for treating iatrogenic pneumothorax after cardiac electronic device implantation: a pilot study
Cited by: 6
Author(s): Dominika Domokos, András Szabó, Gyöngyvér Bánhegyi, Balázs Polgár, Zsolt Bári, Péter Bógyi, István Marczell, Leticia Papp, Róbert Gábor Kiss, Gabor Z. Duray, Béla Merkely, István Hizoh
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pmed.1003656

SARS-CoV-2 neutralizing antibodies: Longevity, breadth, and evasion by emerging viral variants
Cited by: 100
Author(s): Marc Charabati, Alberto Ospina Stella, Anupriya Aggarwal, D.R. Darley, Deepti Pilli, Daniele Vitale, Vera Merheb, Fiona X Z Lee, Philip Cunningham, G. J. Walker, Christina Fichter, David A. Brown, William D. Rawlinson, Sonia R Isaacs, Vennila Mathivanan, Markus Hoffmann, Stefan Pöhlman, Ohan Mazigi, Daniel Christ, Dominic E. Dwyer, Rebecca Rockett, Vitali Sintchenko, Veronica C. Hoad, David O. Irving, Gregory J. Dore, Iain B Gosbell, Anthony D. Kelleher, Gail V. Matthews, Fabienne Brilot, Stuart Turville
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2020.609601

Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
Cited by: 4
Author(s): Dingdong He, Xiaokang Zhang, Xinyu Zhu, Narayani Maharjan, Yingchao Wang, Ping Luo, Chunzi Liang, Jiancheng Tu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0249679

Movement intensity demands between training activities and competition for elite female netballers
Cited by: 1
Author(s): Edward R. Brooks, Amanda Benson, Aaron Fox, Lyndell Bruce
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0155752

Patterns of Coral-Reef Finfish Species Disappearances Inferred from Fishers’ Knowledge in Global Epicentre of Marine Shorefish Diversity
Cited by: 38
Author(s): Margarita N. Lavides, E. Molina, Gregorio E. de la Rosa, Aileen C. Mill, Stephen Rushton, Selina M. Stead, Nicholas V. C. Polunin
Software Mentions: 4
Published: about 10 years ago

10.3389/fpls.2021.619634

Comparative Metabolite and Gene Expression Analyses in Combination With Gene Characterization Revealed the Patterns of Flavonoid Accumulation During Cistus creticus subsp. creticus Fruit Development
Cited by: 6
Author(s): Neda Aničić, Efstathia Patelou, Antigoni Papanikolaou, Anthi Kanioura, Camilla Valdesturli, Panagiotis Arapitsas, Marijana Škorić, Milan Dragićević, Uroš Gašić, Αθανάσιος Κουκουνάρας, Stefanos Kostas, Eirini Sarrou, Stefan Martens, Danijela Mišić, Angelos K. Kanellis
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0206531

The music that helps people sleep and the reasons they believe it works: A mixed methods analysis of online survey reports
Cited by: 42
Author(s): Tabitha Trahan, Simon J. Durrant, Daniel Müllensiefen, Victoria J. Williamson
Software Mentions: 4
Published: over 7 years ago

10.1099/jmm.0.001256

Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitis
Cited by: 20
Author(s): Christopher J. Barnes, L. Rasmussen, Maria E. Asplund, Steen Wilhelm Knudsen, Maja‐Lisa Clausen, Tove Agner, Anders J. Hansen
Software Mentions: 4
Published: over 5 years ago

10.1186/s13071-018-3248-z

Patterns of Fasciola hepatica infection in Danish dairy cattle: implications for on-farm control of the parasite based on different diagnostic methods
Cited by: 14
Author(s): Nao Takeuchi-Storm, Matthew Denwood, Heidi Huus Petersen, Heidi L. Enemark, Anna‐Sofie Stensgaard, Mita E. Sengupta, Nicola J. Beesley, Jane E. Hodgkinson, Diana Williams, Stig Milan Thamsborg
Software Mentions: 4
Published: over 7 years ago

10.1136/jitc-2020-001610

Neoadjuvant chemoradiation alters biomarkers of anticancer immunotherapy responses in locally advanced rectal cancer
Cited by: 17
Author(s): Incheol Seo, Hye Won Lee, Sang Jun Byun, Jee Young Park, Hyeonji Min, Sung Hwan Lee, Ju-Seog Lee, Shin Kim, Sung Uk Bae
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.580750

Assessment of Prognostic Value of Cystic Features in Glioblastoma Relative to Sex and Treatment With Standard-of-Care
Cited by: 10
Author(s): Lee Curtin, Paula Whitmire, Cassandra R. Rickertsen, Gina L. Mazza, Peter Canoll, Sandra K. Johnston, Maciej M. Mrugala, Kristin R. Swanson, Leland Hu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0223397

Brief communication: Long-term absence of Langerhans cells alters the gene expression profile of keratinocytes and dendritic epidermal T cells
Cited by: 10
Author(s): Qingtai Su, Aurélie Bouteau, Jacob Cardenas, Uthra Balaji, Yuanyaun Wang, Cynthia Smitherman, Jin Gu, Botond Z. Igyártó
Software Mentions: 4
Published: over 6 years ago

10.1111/1751-7915.13393

Black soldier fly larvae (Hermetia illucens) strengthen the metabolic function of food waste biodegradation by gut microbiome
Cited by: 107
Author(s): Cheng-Liang Jiang, Wei-Zheng Jin, Xin-Hua Tao, Qian Zhang, Jun Zhu, Shiyun Feng, Xinhua Xu, Hongyi Li, Zehua Wang, Zhijian Zhang
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0220647

Hypoxia causes woodlice (Porcellio scaber) to select lower temperatures and impairs their thermal performance and heat tolerance
Cited by: 10
Author(s): Andrzej Antoł, Wiktoria Rojek, Sanjeev Singh, Damian Piekarski, Marcin Czarnołęski
Software Mentions: 4
Published: almost 7 years ago

10.1017/S0031182020001018

Cross-infectivity of honey and bumble bee-associated parasites across three bee families
Cited by: 29
Author(s): Lyna Ngor, Evan C. Palmer‐Young, Rodrigo Burciaga Nevarez, Kaleigh A. Russell, Laura Leger, Sara June Giacomini, Mario S Pinilla-Gallego, Rebecca E. Irwin, Quinn S. McFrederick
Software Mentions: 4
Published: about 6 years ago

10.1186/s12917-020-02430-3

Gut microbiota profiles of commercial laying hens infected with tumorigenic viruses
Cited by: 1
Author(s): Xianhua Wan, Laipeng Xu, Xiaolun Sun, Hui Li, Fengbin Yan, Ruili Han, Hong Li, Zhuanjian Li, Yadong Tian, Xiaojun Liu, Xin Kang, Zhenya Wang, Yanbin Wang
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0245243

Potential role of the skin and gut microbiota in premenarchal vulvar lichen sclerosus: A pilot case-control study
Cited by: 13
Author(s): Suhana Chattopadhyay, Justin D. Arnold, Leena Malayil, Lauren E. Hittle, Emmanuel F. Mongodin, Kalyani Marathe, Veronica Gómez-Lobo, Amy R. Sapkota
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0176762

Indexical and linguistic processing by 12-month-olds: Discrimination of speaker, accent and vowel differences
Cited by: 12
Author(s): Karen E. Mulak, Cory D. Bonn, Kateřina Chládková, Richard Ν. Aslin, Paola Escudero
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0193484

AHR2 required for normal behavioral responses and proper development of the skeletal and reproductive systems in zebrafish
Cited by: 39
Author(s): Gloria R. Garcia, Sean M. Bugel, Lisa Truong, Sean Spagnoli, Robert L. Tanguay
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0231083

Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla
Cited by: 4
Author(s): Yakshi Ortiz, Carla Restrepo, Brayan Vilanova-Cuevas, Eugenio Santiago‐Valentín, Susannah G. Tringe, Filipa Godoy-Vitorino
Software Mentions: 4
Published: about 6 years ago

10.1128/mSphere.00227-21

Microbiome Analysis Reveals Diversity and Function of Mollicutes Associated with the Eastern Oyster, Crassostrea virginica
Cited by: 16
Author(s): Zachary T. Pimentel, Keith Dufault‐Thompson, Kayla T. Russo, Abigail K. Scro, Roxanna Smolowitz, Marta Gómez-Chiarri, Ying Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0233067

No evidence for a relationship between breed cooperativeness and inequity aversion in dogs
Cited by: 5
Author(s): Jim McGetrick, Désirée Brucks, Sarah Marshall-Pescini, Friederike Range
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0210220

Resilience and stability of kelp forests: The importance of patch dynamics and environment-engineer feedbacks
Cited by: 56
Author(s): Cayne Layton, Victor Shelamoff, Matthew J. Cameron, Masayuki Tatsumi, Jeffrey T. Wright, Craig R. Johnson
Software Mentions: 4
Published: over 7 years ago

10.1128/mSphere.00009-21

Bacterial Quorum-Sensing Signal Arrests Phytoplankton Cell Division and Impacts Virus-Induced Mortality
Cited by: 16
Author(s): Scott Black Pollara, Jamie W. Becker, Brook L. Nunn, Rene Boiteau, Daniel J. Repeta, Miranda C. Mudge, Grayton Downing, Davis Chase, Elizabeth L. Harvey, Kristen E. Whalen
Software Mentions: 4
Published: almost 5 years ago

10.3390/nu11061425

Mixed Spices at Culinary Doses Have Prebiotic Effects in Healthy Adults: A Pilot Study
Cited by: 24
Author(s): Qing-Yi Lu, Anna Rasmussen, Jieping Yang, Ru-Po Lee, Jianjun Huang, Paul Shao, Catherine L. Carpenter, Irene Gilbuena, Gail Thames, Susanne M. Henning, David Heber, Zhaoping Li
Software Mentions: 4
Published: about 7 years ago

10.3390/ijms22041912

Sensitivity to Cisplatin in Head and Neck Cancer Cells Is Significantly Affected by Patient-Derived Cancer-Associated Fibroblasts
Cited by: 13
Author(s): Barbora Peltanová, Marketa Liskova, Jaromír Gumulec, Martina Raudenská, Hana Polanská, Tomáš Vaculovič, David Kalfeřt, Marek Grega, Jan Plzák, Jan Betka, Michal Masařík
Software Mentions: 4
Published: over 5 years ago

10.1186/s12887-020-02272-w

Breastfeeding patterns in cohort infants at a high-risk fetal, neonatal and child referral center in Brazil: a correspondence analysis
Cited by: 4
Author(s): Maíra Domingues Bernardes Silva, Raquel de Vasconcellos Carvalhaes de Oliveira, José Ueleres Braga, João Aprígio Guerra de Almeida, Enirtes Caetano Prates Melo
Software Mentions: 4
Published: almost 6 years ago

10.3390/nu12040999

Effects of Shift Work on the Eating Behavior of Police Officers on Patrol
Cited by: 38
Author(s): Anastasi Kosmadopoulos, Laura Kervezee, Philippe Boudreau, Fernando Gonzales-Aste, Nina Vujović, Frank A.J.L. Scheer, Diane B. Boivin
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0142707

State-Space Modelling of the Drivers of Movement Behaviour in Sympatric Species
Cited by: 12
Author(s): F. Javier Pérez‐Barbería, Michael Small, R. J. Hooper, A. Aldezábal, Ramón C. Soriguer-Escofet, George S. Bakken, Iain J. Gordon
Software Mentions: 4
Published: over 10 years ago

10.3390/ijms20225775

Impact of Paraburkholderia phytofirmans PsJN on Grapevine Phenolic Metabolism
Cited by: 13
Author(s): Lidiane Miotto-Vilanova, Barbara Courteaux, Rosa Padilla, Fanja Rabenoelina, Cédric Jacquard, Christophe Clément, Gilles Comte, Céline Lavire, Essaïd Ait Barka, Isabelle Kerzaon, Lisa Sanchez
Software Mentions: 4
Published: over 6 years ago

10.3390/genes10120979

Transcriptome Analysis of the Cecal Tonsil of Jingxing Yellow Chickens Revealed the Mechanism of Differential Resistance to Salmonella
Cited by: 12
Author(s): Fei Wang, Jin Zhang, Bo Zhu, Jie Wang, Qiao Wang, Maiqing Zheng, Jie Wen, Qinghe Li, Guiping Zhao
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2020.00912

More Filtering on SNP Calling Does Not Remove Evidence of Inter-Nucleus Recombination in Dikaryotic Arbuscular Mycorrhizal Fungi
Cited by: 6
Author(s): Eric C. Chen, Stephanie Mathieu, Anne Hoffrichter, Jeanne Ropars, Steven Dreißig, Joerg Fuchs, Andreas Brachmann, Nicolas Corradi
Software Mentions: 4
Published: almost 6 years ago

10.1523/ENEURO.0017-18.2018

Tracking Temporal Hazard in the Human Electroencephalogram Using a Forward Encoding Model
Cited by: 26
Author(s): Sophie K. Herbst, Lorenz Fiedler, Jonas Obleser
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-73146-5

Ancestral function of Inhibitors-of-kappaB regulates Caenorhabditis elegans development
Cited by: 9
Author(s): David Brena, Joan Bertran, Montserrat Porta-de-la-Riva, Yolanda Guillén, Eric Cornes, Dmytro Kukhtar, Lluís Campos-Vicens, Lierni Fernández, Irene Pecharromán, Albert García-López, Abul B.M.M.K. Islam, Laura Marruecos, Anna Bigas, Julián Cerón, Lluís Espinosa
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-021-07417-4

Identification of novel genes involved in neutral lipid storage by quantitative trait loci analysis of Saccharomyces cerevisiae
Cited by: 3
Author(s): Klavdija Pačnik, Mojca Ogrizović, Matthias Diepold, Tobias Eisenberg, Mia Žganjar, Gašper Žun, Beti Kužnik, Cene Gostinčar, Tomaž Curk, Uroš Petrovič, Klaus Natter
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0211705

Little cigars and cigarillos harbor diverse bacterial communities that differ between the tobacco and the wrapper
Cited by: 11
Author(s): Suhana Chattopadhyay, Eoghan M. Smyth, Prachi Kulkarni, Kelsey R. Babik, Molly C. Reid, Lauren E. Hittle, Pamela I. Clark, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2021.660658

Substrate Type Influences the Structure of Epiphyte Communities and the Growth of Posidonia oceanica Seedlings
Cited by: 1
Author(s): Davide De Battisti, Elena Balestri, G. Pardi, Virginia Menicagli, Claudio Lardicci
Software Mentions: 4
Published: about 5 years ago

10.3390/nu12113422

PROVIT: Supplementary Probiotic Treatment and Vitamin B7 in Depression—A Randomized Controlled Trial
Cited by: 59
Author(s): Eva Reininghaus, Martina Platzer, Alexandra Kohlhammer-Dohr, Carlo Hamm, Sabrina Mörkl, Susanne Bengesser, Frederike T. Fellendorf, Theressa Lahousen-Luxenberger, Birgitta Leitner-Afschar, Helmut Schöggl, Daniela Amberger-Otti, Walter Wurm, Robert Queissner, Armin Birner, Valerie S Falzberger, Annamaria Painold, Werner Fitz, Jolana Wagner-Skacel, Martina Brunnmayr, Alexandra Rieger, Alexander Maget, Renate Unterweger, Karin Schwalsberger, Bernd Reininghaus, Melanie Lenger, Thomaz F.S. Bastiaanssen, Nina Dalkner
Software Mentions: 4
Published: over 5 years ago

10.1042/BSR20210759

Metabolic profiling of maternal serum of women at high-risk of spontaneous preterm birth using NMR and MGWAS approach
Cited by: 1
Author(s): Juhi Gupta, Angharad Care, Laura Goodfellow, Žarko Alfirević, Lu‐Yun Lian, Bertram Müller‐Myhsok, Ana Alfirevic, Marie M. Phelan
Software Mentions: 4
Published: almost 5 years ago

10.18632/genesandcancer.188

Transcriptomic analysis functionally maps the intrinsically disordered domain of EWS/FLI and reveals novel transcriptional dependencies for oncogenesis
Cited by: 15
Author(s): Emily R. Theisen, Kyle R. Miller, Iftekhar A. Showpnil, Cenny Taslim, Kathleen I. Pishas, Stephen L. Lessnick
Software Mentions: 4
Published: over 7 years ago

10.1074/mcp.RA119.001392

Cathepsin L Regulates Metabolic Networks Controlling Rapid Cell Growth and Proliferation
Cited by: 7
Author(s): Tommy Weiss-Sadan, Gal Itzhak, Farnusch Kaschani, Zhanru Yu, Mohamed Mahameed, Adi Anaki, Yael Ben-Nun, Emmanuelle Merquiol, Boaz Tirosh, Benedikt M. Kessler, Markus Kaiser, Galia Blum
Software Mentions: 4
Published: almost 7 years ago

10.1074/mcp.M115.049205

Drought and Recovery: Independently Regulated Processes Highlighting the Importance of Protein Turnover Dynamics and Translational Regulation in Medicago truncatula
Cited by: 37
Author(s): David Lyon, María Ángeles Castillejo, Vlora Mehmeti-Tershani, Christiana Staudinger, Christoph Kleemaier, Stefanie Wienkoop
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0236464

Estimation of time-varying reproduction numbers underlying epidemiological processes: A new statistical tool for the COVID-19 pandemic
Cited by: 71
Author(s): Hyokyoung Grace Hong, Yang Li
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijms21062249

AHR Signaling Dampens Inflammatory Signature in Neonatal Skin γδ T Cells
Cited by: 11
Author(s): Katja Merches, Alfonso Schiavi, Heike Weighardt, Swantje Steinwachs, Nadine Teichweyde, Irmgard Förster, K Hochrath, Beatrix Schumak, Natascia Ventura, Patrick Petzsch, Karl Köhrer, Charlotte Esser
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0098115

Escherichia coli O157:H7 Super-Shedder and Non-Shedder Feedlot Steers Harbour Distinct Fecal Bacterial Communities
Cited by: 44
Author(s): Yong Xu, Éric Dugat-Bony, Rahat Zaheer, L.B. Selinger, Ruth Barbieri, Krysty Munns, Tim A. McAllister, L. Brent Selinger
Software Mentions: 4
Published: about 12 years ago

10.1128/mSphere.00451-20

Assessing the Variation within the Oral Microbiome of Healthy Adults
Cited by: 43
Author(s): Jacob T. Nearing, Vanessa DeClercq, Johan Van Limbergen, Morgan G. I. Langille
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pmed.1002722

Airway obstruction and bronchial reactivity from age 1 month until 13 years in children with asthma: A prospective birth cohort study
Cited by: 33
Author(s): Henrik Wegener Hallas, Bo Chawes, Morten Arendt Rasmussen, Lambang Arianto, Jakob Stokholm, Klaus Bønnelykke, Hans Bisgaard
Software Mentions: 4
Published: over 7 years ago

10.1016/j.mcpro.2021.100065

Stable Isotope Labeling of Amino Acids in Flies (SILAF) Reveals Differential Phosphorylation of Mitochondrial Proteins Upon Loss of OXPHOS Subunits
Cited by: 5
Author(s): F. Schober, Ilian Atanassov, David Moore, Javier Calvo‐Garrido, Marco F. Moedas, Anna Wedell, Christoph Freyer, Anna Wredenberg
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0187079

Immune related gene expression in worker honey bee (Apis mellifera carnica) pupae exposed to neonicotinoid thiamethoxam and Varroa mites (Varroa destructor)
Cited by: 36
Author(s): Tanja Tesovnik, Ivanka Cizelj, Minja Zorc, Manuela Čitar, Janko Božič, Gordana Glavan, Mojca Narat
Software Mentions: 4
Published: over 8 years ago

10.3389/fonc.2021.616149

Prognostic Impact of Radiological Consolidation Tumor Ratio in Clinical Stage IA Pulmonary Ground Glass Opacities
Cited by: 21
Author(s): Junjie Xi, Jiacheng Yin, Jiaqi Liang, Cheng Zhan, Wei Jiang, Lin Zhang, Songtao Xu, Qun Wang
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0234050

Characterizing the microbiome of ectoparasitic louse flies feeding on migratory raptors
Cited by: 4
Author(s): Rebecca A. McCabe, Joseph P. Receveur, Jennifer L. Houtz, Kayli L. Thomas, M. Eric Benbow, Jennifer L. Pechal, John R. Wallace
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2020.586820

Tumor Derived SIGLEC Family Genes May Play Roles in Tumor Genesis, Progression, and Immune Microenvironment Regulation
Cited by: 14
Author(s): Chen Zheng, Ming Yu, Lei Guo, Bo Zhang, Shuang Liu, Wentao Zhang, Bing Zhou, Jiuliang Yan, Qianni Ma, Zhixu Yang, Xiao Ye, Yongfeng Xu, Hui Li, Qing–Hai Ye
Software Mentions: 4
Published: over 5 years ago

10.1042/BSR20203459

CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
Cited by: 10
Author(s): Xiaojing Qin, Lin Xu, Guoqiang Xue, Huiying Fan, Haoyu Wang, Jing Wu, Da Pei
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22041811

Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions in Mitochondrial Genomes
Cited by: 15
Author(s): Liina Kinkar, Robin B. Gasser, Bonnie L. Webster, David Rollinson, D. Timothy J. Littlewood, Bill C.H. Chang, Andreas J. Stroehlein, Pasi K. Korhonen, Neil D. Young
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0165267

Plasma Metabolites Predict Severity of Depression and Suicidal Ideation in Psychiatric Patients-A Multicenter Pilot Analysis
Cited by: 87
Author(s): Daiki Setoyama, Takahiro A. Kato, Ryota Hashimoto, Hiroshi Kunugi, Kotaro Hattori, Kohei Hayakawa, Mina Sato-Kasai, Norihiro Shimokawa, Sachie Kaneko, Sumiko Yoshida, Yu Ichi Goto, Yuka Yasuda, Hidenaga Yamamori, Masahiro Ohgidani, Noriyuki Sagata, Daisuke Miura, Dongchon Kang, Shigenobu Kanba
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0182585

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients
Cited by: 55
Author(s): Eli L. Moss, Shannon B. Falconer, Е. И. Ткаченко, Mingjie Wang, Hannah Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth Hohmann, Ami S. Bhatt
Software Mentions: 4
Published: almost 9 years ago

10.1042/BSR20203020

Network-based approach to identify prognosis-related genes in tamoxifen-treated patients with estrogen receptor-positive breast cancer
Cited by: 4
Author(s): Yanyan Wang, Xiaonan Gong, Yujie Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0225842

Impact of oral probiotic Lactobacillus acidophilus vaccine strains on the immune response and gut microbiome of mice
Cited by: 14
Author(s): Zaid Abdo, Jonathan LeCureux, Alora LaVoy, Bridget Eklund, Elizabeth P. Ryan, Gregg A. Dean
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-016-3230-0

Insights into the human mesenchymal stromal/stem cell identity through integrative transcriptomic profiling
Cited by: 47
Author(s): Beatriz Rosón-Burgo, Fermín Sánchez‐Guijo, Consuelo del Cañizo, Javier De Las Rivas
Software Mentions: 4
Published: over 9 years ago

10.1016/j.molcel.2018.10.018

Repression of Divergent Noncoding Transcription by a Sequence-Specific Transcription Factor
Cited by: 32
Author(s): Andrew Wu, Harshil Patel, Minghao Chia, Fabien Moretto, David Frith, Ambrosius P. Snijders, Folkert J. van Werven
Software Mentions: 4
Published: over 7 years ago

10.1042/BSR20201427

Mining novel cell glycolysis related gene markers that can predict the survival of colon adenocarcinoma patients
Cited by: 16
Author(s): Sihan Chen, Guodong Cao, Wei Wu, Yida Lu, Xueling He, Lei Yang, Ke Chen, Bo Chen, Maoming Xiong
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijms21093318

Epigenetic Patterns and Geographical Parthenogenesis in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
Cited by: 7
Author(s): Christoph C. F. Schinkel, Eleni Syngelaki, Bernhard Kirchheimer, Stefan Dullinger, Simone Klatt, Elvira Hörandl
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2020.01658

Circulating Tumor Cells Expressing the Prostate Specific Membrane Antigen (PSMA) Indicate Worse Outcome in Primary, Non-Metastatic Triple-Negative Breast Cancer
Cited by: 14
Author(s): Sabine Kasimir‐Bauer, Corinna Keup, Oliver Hoffmann, Siegfried Hauch, Rainer Kimmig, Ann‐Kathrin Bittner
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.716921

HNRNPA2B1, as a m6A Reader, Promotes Tumorigenesis and Metastasis of Oral Squamous Cell Carcinoma
Cited by: 22
Author(s): Feiya Zhu, Tianru Yang, Meiling Yao, Ting Shen, Changyun Fang
Software Mentions: 4
Published: almost 5 years ago

Projects: cran: ggplot2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning ggplot2 11,441