cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1111/eva.12825

Signatures of adaptive divergence among populations of an avian species of conservation concern
Cited by: 10
Author(s): Shawna J. Zimmerman, Cameron L. Aldridge, Kevin P. Oh, Robert S. Cornman, Sara J. Oyler‐McCance
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2019.02682

Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP
Cited by: 29
Author(s): Anne E. Dekas, Alma E. Parada, Xavier Mayali, Jed A. Fuhrman, Jessica Wollard, Peter K. Weber, Jennifer Pett‐Ridge
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2015.01531

Metagenomic Analysis Suggests Modern Freshwater Microbialites Harbor a Distinct Core Microbial Community
Cited by: 43
Author(s): Richard Allen White, Amy M. Chan, Gregory S. Gavelis, Brian S. Leander, A. L. Brady, G. F. Slater, D. S. S. Lim, Curtis A. Suttle
Software Mentions: 4
Published: over 10 years ago

10.3389/fmed.2021.607255

Comparison Between Cultivation and Sequencing Based Approaches for Microbiota Analysis in Swabs and Biopsies of Chronic Wounds
Cited by: 9
Author(s): Aleksander Mahnič, Vesna Breznik, Maja Bombek Ihan, Maja Rupnik
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-020-6760-4

Intron and gene size expansion during nervous system evolution
Cited by: 30
Author(s): Matthew J. McCoy, Andrew Fire
Software Mentions: 4
Published: over 6 years ago

10.3389/fmed.2020.00161

Whole Genome Sequencing and Spatial Analysis Identifies Recent Tuberculosis Transmission Hotspots in Ghana
Cited by: 14
Author(s): Prince Asare, Isaac Darko Otchere, Edmund Bedeley, Daniela Brites, Chloé Loiseau, Nyonuku Akosua Baddoo, Adwoa Asante-Poku, Stephen Osei-Wusu, Diana Ahu Prah, Sònia Borrell, Miriam Reinhard, Audrey Forson, Kwadwo A. Koram, Sébastien Gagneux, Dorothy Yeboah-Manu
Software Mentions: 4
Published: over 6 years ago

10.1002/evl3.243

Larger cells have relatively smaller nuclei across the Tree of Life
Cited by: 11
Author(s): Martino E. Malerba, Dustin J. Marshall
Software Mentions: 4
Published: about 5 years ago

10.1111/evo.13865

Altitude and life‐history shape the evolution ofHeliconiuswings
Cited by: 25
Author(s): Gabriela Montejo‐Kovacevich, Jennifer E. Smith, Joana I. Meier, Caroline Bacquet, Eva Whiltshire-Romero, Nicola J. Nadeau, Chris D. Jiggins
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmed.2021.737007

Severe SARS-CoV-2 Breakthrough Reinfection With Delta Variant After Recovery From Breakthrough Infection by Alpha Variant in a Fully Vaccinated Health Worker
Cited by: 64
Author(s): Jayanthi Shastri, Swapneil Parikh, Veena Aggarwal, Sachee Agrawal, Nirjhar Chatterjee, Rajit Shah, Priti Devi, Priyanka Mehta, Rajesh Pandey
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.689051

Individuality in the Immune Repertoire and Induced Response of the Sponge Halichondria panicea
Cited by: 11
Author(s): Lara Schmittmann, Sören Franzenburg, Lucía Pita
Software Mentions: 4
Published: about 5 years ago

10.1007/s10493-018-0320-5

Life-history consequences of bidirectional selection for male morph in a male-dimorphic bulb mite
Cited by: 4
Author(s): Tom P. G. Van den Beuken, Isabel M. Smallegange
Software Mentions: 4
Published: almost 8 years ago

10.1128/MRA.00968-20

16S rRNA Gene Diversity of Bacterial Endophytes in Parasitic Cuscuta campestris and Its Helianthus annuus Host
Cited by: 0
Author(s): Adam T. Avila, Tricia A. Van Laar, John V. H. Constable, Katherine Waselkov
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40164-020-00181-3

The global, regional, and national burden of kidney cancer and attributable risk factor analysis from 1990 to 2017
Cited by: 23
Author(s): Xia Bai, Ming Yi, Bing Dong, Xinhua Zheng, Kongming Wu
Software Mentions: 4
Published: almost 6 years ago

10.3389/fimmu.2020.00395

In Human Autoimmunity, a Substantial Component of the B Cell Repertoire Consists of Polyclonal, Barely Mutated IgG+ve B Cells
Cited by: 13
Author(s): Gillian Cowan, Katherine Miles, Lorenzo Capitani, Sophie Giguere, Hanna Johnsson, Carl S. Goodyear, Iain B. McInnes, Steffen Breusch, David Gray, Mohini Gray
Software Mentions: 4
Published: over 6 years ago

10.1038/s12276-021-00627-6

Gut microbiota restoration through fecal microbiota transplantation: a new atopic dermatitis therapy
Cited by: 36
Author(s): Jong-Hwa Kim, Ki‐Young Kim, Wonyong Kim
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2013.00379

CD4+ T Cell-Receptor Repertoire Diversity is Compromised in the Spleen but Not in the Bone Marrow of Aged Mice Due to Private and Sporadic Clonal Expansions
Cited by: 29
Author(s): Eric Shifrut, Kuti Baruch, Hilah Gal, Wilfred Ndifon, Aleksandra Deczkowska, Michal Schwartz, Nir Friedman
Software Mentions: 4
Published: over 13 years ago

10.1186/s12864-020-07322-2

Environmental RNAi pathways in the two-spotted spider mite
Cited by: 10
Author(s): Mosharrof Mondal, Jacob Peter, Obrie Scarbrough, Alex S. Flynt
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-018-2591-6

Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico
Cited by: 18
Author(s): Mengjie Zhang, Anna O. Basile, Sarah A. Pendergrass, Marylyn D. Ritchie
Software Mentions: 4
Published: over 7 years ago

10.12688/f1000research.6925.1

GOsummaries: an R Package for Visual Functional Annotation of Experimental Data
Cited by: 71
Author(s): Raivo Kolde, Jaak Vilo
Software Mentions: 4
Published: about 11 years ago

10.1016/j.appet.2018.10.021

Impact of proximity of healthier versus less healthy foods on intake: A lab-based experiment
Cited by: 10
Author(s): Jennifer A. Hunter, Gareth J Hollands, Mark Pilling, Theresa Marteau
Software Mentions: 4
Published: over 7 years ago

10.1128/AEM.02470-17

Influence of Pig Farming on the Human Nasal Microbiota: Key Role of Airborne Microbial Communities
Cited by: 59
Author(s): Julia G. Kraemer, Alban Ramette, Suzanne Aebi, Anne Oppliger, Markus Hilty
Software Mentions: 4
Published: over 8 years ago

10.1186/s12859-016-0982-0

Modeling the integration of bacterial rRNA fragments into the human cancer genome
Cited by: 5
Author(s): Karsten B. Sieber, Pawel Gajer, Julie C. Dunning Hotopp
Software Mentions: 4
Published: over 10 years ago

10.1186/s12859-018-2489-3

A new sequence logo plot to highlight enrichment and depletion
Cited by: 43
Author(s): Kushal Kumar Dey, Dongyue Xie, Matthew Stephens
Software Mentions: 4
Published: over 7 years ago

10.12688/f1000research.10016.1

Environmental volunteer well-being: Managers’ perception and actual well-being of volunteers
Cited by: 9
Author(s): Gitte Kragh, Richard Stafford, Susanna Curtin, Anita Díaz
Software Mentions: 4
Published: almost 10 years ago

10.3389/fimmu.2021.607827

Validation and Optimization of Host Immunological Bio-Signatures for a Point-of-Care Test for TB Disease
Cited by: 22
Author(s): Hygon Mutavhatsindi, Gian D. van der Spuy, Stephanus T. Malherbe, Jayne S. Sutherland, Annemieke Geluk, Harriet Mayanja‐Kizza, Amelia C. Crampin, Desta Kassa, Rawleigh Howe, Adane Mihret, Jacob Sheehama, Emmanuel Nepolo, Gunar Günther, Hazel M. Dockrell, Paul L. A. M. Corstjens, Kim Stanley, Gerhard Walzl, Novel N. Chegou, Ae-Tbc ScreenTB Consortia
Software Mentions: 4
Published: over 5 years ago

10.12688/f1000research.15789.2

TRGAted: A web tool for survival analysis using protein data in the Cancer Genome Atlas.
Cited by: 18
Author(s): Nicholas Borcherding, Nicholas L. Bormann, Andrew P. Voigt, Weizhou Zhang
Software Mentions: 4
Published: almost 8 years ago

10.3389/fimmu.2017.01372

Transcriptome Analysis of Circulating Immune Cell Subsets Highlight the Role of Monocytes in Zaire Ebola Virus Makona Pathogenesis
Cited by: 40
Author(s): Andrea Menicucci, Krista Versteeg, Courtney Woolsey, Chad E. Mire, Joan B. Geisbert, Robert W. Cross, Krystle N. Agans, Allen Jankeel, Thomas W. Geisbert, Ilhem Messaoudi
Software Mentions: 4
Published: almost 9 years ago

10.1128/AEM.02673-20

The Effects of Soil Depth on the Structure of Microbial Communities in Agricultural Soils in Iowa (United States)
Cited by: 53
Author(s): Jingjie Hao, Yen Ning Chai, Lucas Dantas Lopes, Raziel A. Ordóñez, Emily E. Wright, Sotirios Archontoulis, Daniel P. Schachtman
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2019.02096

Plasmacytoid DCs From Patients With Sjögren's Syndrome Are Transcriptionally Primed for Enhanced Pro-inflammatory Cytokine Production
Cited by: 37
Author(s): Maarten R Hillen, Aridaman Pandit, Sofie L M Blokland, Sarita A. Y. Hartgring, Cornelis P. J. Bekker, Eefje Hanna Martine van der Heijden, Nila Hendrika Servaas, Marzia Rossato, Aike A. Kruize, Joël A G van Roon, Timothy R D J Radstake
Software Mentions: 4
Published: almost 7 years ago

10.1186/s40168-018-0480-x

Tracking antibiotic resistance gene pollution from different sources using machine-learning classification
Cited by: 100
Author(s): Li-Guan Li, Xiaole Yin, Tong Zhang
Software Mentions: 4
Published: over 8 years ago

10.1128/AEM.02177-20

Identification of Natural Mutations Responsible for Altered Infection Phenotypes of Salmonella enterica Clinical Isolates by Using Cell Line Infection Screens
Cited by: 5
Author(s): Rafał Kolenda, Michał Burdukiewicz, Marcjanna Wimonć, Adrianna Aleksandrowicz, Aamir Ali, István Szabó, Karsten Tedin, Josefin Bartholdson Scott, Derek Pickard, Peter Schierack
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-017-0331-1

Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities
Cited by: 110
Author(s): Robert Danczak, Michael D. Johnston, Chris Kenah, Michael T. Slattery, Kelly Wrighton, Michael J. Wilkins
Software Mentions: 4
Published: almost 9 years ago

10.3389/fimmu.2021.644838

High Resolution Haplotype Analyses of Classical HLA Genes in Families With Multiple Sclerosis Highlights the Role of HLA-DP Alleles in Disease Susceptibility
Cited by: 4
Author(s): Kazutoyo Osoegawa, Lisa E. Creary, Gonzalo Montero-Martín, Kalyan C. Mallempati, Sridevi Gangavarapu, Stacy J. Caillier, Adam Santaniello, Noriko Isobe, Jill A. Hollenbach, Stephen L. Hauser, Jorge R. Oksenberg, Marcelo Fernández-Viña
Software Mentions: 4
Published: over 5 years ago

10.3758/s13414-019-01842-0

Media multitasking, mind-wandering, and distractibility: A large-scale study
Cited by: 14
Author(s): Wisnu Wiradhany, Marieke K. van Vugt, Mark Nieuwenstein
Software Mentions: 4
Published: about 7 years ago

10.12688/f1000research.27284.2

What are the long-term symptoms and complications of COVID-19: a protocol for a living systematic review
Cited by: 3
Author(s): Melina Michelen, Hung-Yuan Cheng, Lakshmi Manoharan, Natalie Elkheir, Andrew Dagens, Claire Hastie, Margaret O’Hara, Jake Suett, Dania Dahmash, Paulina Bugaeva, Ishmeala Rigby, Daniel Munblit, Eli Harriss, Amanda Burls, Carol Foote, Janet T. Scott, Gail Carson, Piero Olliaro, Louise Sigfrid, Charitini Stavropoulou
Software Mentions: 4
Published: almost 5 years ago

10.12688/f1000research.4510.2

Cytoscape tools for the web age: D3.js and Cytoscape.js exporters
Cited by: 38
Author(s): Keiichiro Ono, Barry Demchak, Trey Ideker
Software Mentions: 4
Published: almost 12 years ago

10.1186/s12967-021-02991-3

Analysis of immune cell components and immune-related gene expression profiles in peripheral blood of patients with type 1 diabetes mellitus
Cited by: 7
Author(s): Jian Lin, Yuanhua Lu, Bizhou Wang, Peng Jiao, Jie Ma
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-018-0553-x

Longitudinal development of the dust microbiome in a newly opened Norwegian kindergarten
Cited by: 23
Author(s): Anders Benteson Nygaard, Colin Charnock
Software Mentions: 4
Published: almost 8 years ago

10.3389/fimmu.2020.573920

High Abundance of Intratumoral γδ T Cells Favors a Better Prognosis in Head and Neck Squamous Cell Carcinoma: A Bioinformatic Analysis
Cited by: 16
Author(s): Huanzi Lu, Daixiu Wei, Junyi Guo, Dikan Wang, Sheng Wen, Lisa Yang, Daowei Lin, Wenqiang Xie, Liling Wen, Juan Fang, Zhi Wang
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2164-15-884

A comparison of gene transcription profiles of domesticated and wild Atlantic salmon (Salmo salar L.) at early life stages, reared under controlled conditions
Cited by: 46
Author(s): Beatrix Bicskei, James E. Bron, Kevin A. Glover, John B. Taggart
Software Mentions: 4
Published: over 12 years ago

10.1002/2211-5463.13130

CCR7 and its related molecules may be potential biomarkers of pulmonary arterial hypertension
Cited by: 5
Author(s): Mengsi Cai, Xiuchun Li, Haoru Dong, Ying Wang, Xiaoying Huang
Software Mentions: 4
Published: over 5 years ago

10.1093/femsec/fiab049

Factors influencing the biodiversity of three microbial groups within and among islands of the Baltic Sea
Cited by: 5
Author(s): Anette Teittinen, Leena Virta, Mingjia Li, Jianjun Wang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41396-019-0581-y

Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink
Cited by: 14
Author(s): Raquel Rodríguez‐Martínez, Guy Leonard, David S. Milner, Sebastian Sudek, Mike Conway, Karen Moore, Theresa Hudson, Frédéric Mahe, Patrick J. Keeling, Alyson E. Santoro, Alexandra Z. Worden, Thomas A. Richards
Software Mentions: 4
Published: over 6 years ago

10.1093/femsec/fix126

Community structure of rare methanogenic archaea: insight from a single functional group
Cited by: 15
Author(s): Shuai Yang, Matthias Winkel, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: almost 9 years ago

10.3389/fimmu.2015.00531

In-Depth Assessment of Within-Individual and Inter-Individual Variation in the B Cell Receptor Repertoire
Cited by: 70
Author(s): Jacob D. Galson, Johannes Trück, Anna Fowler, Márton Münz, Vincenzo Cerundolo, Andrew J. Pollard, Gerton Lunter, Dominic F. Kelly
Software Mentions: 4
Published: almost 11 years ago

10.18632/oncotarget.27840

miR-708-5p enhances erlotinib/paclitaxel efficacy and overcomes chemoresistance in lung cancer cells
Cited by: 13
Author(s): Nicholas J. Monteleone, Carol S. Lutz
Software Mentions: 4
Published: over 5 years ago

10.1128/AEM.01003-19

Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341
Cited by: 20
Author(s): Emelie Nilsson, K. Li, Jimmy Fridlund, Sigitas Šulčius, Carina Bunse, Christofer M. G. Karlsson, Markus V. Lindh, Daniel Lundin, Jarone Pinhassi, Karin Holmfeldt
Software Mentions: 4
Published: almost 7 years ago

10.1128/AEM.01346-19

Violet-Blue Light Arrays at 405 Nanometers Exert Enhanced Antimicrobial Activity for Photodisinfection of Monomicrobial Nosocomial Biofilms
Cited by: 11
Author(s): Fenella D. Halstead, Mohammed Hadis, Neil F. Marley, Kristian Brock, Michael Milward, Paul R. Cooper, Beryl Oppenheim, William M. Palin
Software Mentions: 4
Published: almost 7 years ago

10.3389/fimmu.2020.00216

FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells
Cited by: 26
Author(s): Noudjoud Attaf, Iñaki Cervera-Marzal, Chuang Dong, Laurine Gil, Amédée Renand, Lionel Spinelli, Pierre Milpied
Software Mentions: 4
Published: over 6 years ago

10.3390/foods10081826

Bacterial Community of Grana Padano PDO Cheese and Generical Hard Cheeses: DNA Metabarcoding and DNA Metafingerprinting Analysis to Assess Similarities and Differences
Cited by: 6
Author(s): Miriam Zago, Lia Rossetti, Tommaso Bardelli, Domenico Carminati, Nelson Espinoza N., Giorgio Giraffa
Software Mentions: 4
Published: about 5 years ago

10.3389/fcell.2020.00688

The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Colon Adenocarcinoma Metastasis
Cited by: 30
Author(s): Zhengyan Chang, Runzhi Huang, Wanting Fu, Jiehan Li, Guo Ji, Jinglei Huang, Weijun Shi, Huabin Yin, Weifeng Wang, Tong Meng, Zongqiang Huang, Qing Wei, Huanlong Qin
Software Mentions: 4
Published: about 6 years ago

10.3389/fimmu.2020.608895

Gentamicin Induced Microbiome Adaptations Associate With Increased BCAA Levels and Enhance Severity of Influenza Infection
Cited by: 6
Author(s): Ye Sun, Zi He, Jiajia Li, Saisai Gong, Shunzong Yuan, Tao Li, Nianzhi Ning, Xing Li, Liangyan Zhang, Fanghong Chen, Li Zhan, Jianxin Wang, Di Luo, Hui Wang
Software Mentions: 4
Published: over 5 years ago

10.1128/AEM.00415-18

Shewanella oneidensis MR-1 Utilizes both Sodium- and Proton-Pumping NADH Dehydrogenases during Aerobic Growth
Cited by: 20
Author(s): Kody L. Duhl, Nicholas M. Tefft, Michaela A. TerAvest
Software Mentions: 4
Published: about 8 years ago

10.18632/oncotarget.25382

Aberration hubs in protein interaction networks highlight actionable targets in cancer
Cited by: 4
Author(s): Mehran Karimzadeh, Pouria Jandaghi, Andreas I. Papadakis, Sebastian Trainor, Johan Rung, Mar Gonzàlez-Porta, Ghislaine Scélo, Naveen S. Vasudev, Alvis Brāzma, Sidong Huang, Rosamonde E. Banks, Mark Lathrop, Hamed S. Najafabadi, Yasser Riazalhosseini
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-020-07141-5

Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii
Cited by: 9
Author(s): Peter M. Henry, Sukhwinder Kaur, Quyen Anh Tran Pham, Radwan Barakat, Samuel Brinker, Hannah Haensel, Oleg Daugovish, Lynn Epstein
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-020-00827-8

Disentangling the mechanisms shaping the surface ocean microbiota
Cited by: 131
Author(s): Ramiro Logares, Ina Maria Deutschmann, Pedro C. Junger, Caterina R. Giner, Anders K. Krabberød, Thomas Sebastian Benedikt Schmidt, Laura Rubinat-Ripoll, Mireia Mestre, Guillem Salazar, Clara Ruiz‐González, Marta Sebastián, Colomban de Vargas, Silvia G. Acinas, Carlos M. Duarte, Josep M. Gasol, Ramón Massana
Software Mentions: 4
Published: over 6 years ago

10.18632/oncotarget.27629

Bacteriome and mycobiome and bacteriome-mycobiome interactions in head and neck squamous cell carcinoma
Cited by: 22
Author(s): Elizabeth Shay, Naseer Sangwan, Roshan Padmanabhan, Scott Lundy, Brian B. Burkey, Charis Eng
Software Mentions: 4
Published: about 6 years ago

10.3389/fcell.2021.666376

MCM4 Is a Novel Biomarker Associated With Genomic Instability, BRCAness Phenotype, and Therapeutic Potentials in Soft-Tissue Sarcoma
Cited by: 2
Author(s): Qi Liu, Qiyuan Bao, Yanguang Xu, Yucheng Fu, Zhijian Jin, Jun Wang, Weibin Zhang, Yuhui Shen
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2019.00232

Central and Peripheral Changes in FOS Expression in Schizophrenia Based on Genome-Wide Gene Expression
Cited by: 10
Author(s): Jing Huang, Fangkun Liu, Bolun Wang, Hui Tang, Ziwei Teng, Lehua Li, Yan Qiu, Haishan Wu, Jindong Chen
Software Mentions: 4
Published: over 7 years ago

10.1038/s41396-020-0694-3

Coexistence of genetically different Rhizophagus irregularis isolates induces genes involved in a putative fungal mating response
Cited by: 9
Author(s): Ivan D. Mateus, Edward C. Rojas, Romain Savary, Cindy Dupuis, Frédéric G. Masclaux, Consolée Aletti, Ian R. Sanders
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2021.700489

Comparative Transcriptome Analysis of Milk Somatic Cells During Lactation Between Two Intensively Reared Dairy Sheep Breeds
Cited by: 4
Author(s): Sofia Michailidou, Athanasios Ι. Gelasakis, Georgios Banos, G. Arsenos, Anagnostis Argiriou
Software Mentions: 4
Published: about 5 years ago

10.1038/s41396-020-0686-3

Ecological succession in the vaginal microbiota during pregnancy and birth
Cited by: 39
Author(s): Morten Arendt Rasmussen, Jonathan Thorsen, Maria Gloria Domínguez-Bello, Martin J. Blaser, Martin Steen Mortensen, Asker Brejnrod, Samir A. Shah, Mathis Hjort Hjelmsø, Jenni Lehtimäki, Urvish Trivedi, Hans Bisgaard, Søren J. Sørensen, Jakob Stokholm
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2021.745277

Chromobox Homolog 8 (CBX8) in Human Tumor Carcinogenesis and Prognosis: A Pancancer Analysis Using Multiple Databases
Cited by: 4
Author(s): Dongjie Shi, Lei Ao, Hua Yu, Yongzhi Xia, Juan Li, Wenjie Zhong, Haijian Xia
Software Mentions: 4
Published: almost 5 years ago

10.1155/2021/6656943

Glial Cell-Derived Neurotrophic Factor Functions as a Potential Candidate Gene in Obstructive Sleep Apnea Based on a Combination of Bioinformatics and Targeted Capture Sequencing Analyses
Cited by: 3
Author(s): Yuanyuan Cao, Qing Zhu, Xintian Cai, Ting Wu, Xiayire Aierken, Ayguzal Ahmat, Shasha Li, Nanfang Li
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.654657

Discovery and Verification of an Immune-Related Gene Pairs Signature for Predicting Prognosis in Head and Neck Squamous Cell Carcinoma
Cited by: 0
Author(s): Jiarong He, Xinqi Fang, Mingming Han
Software Mentions: 4
Published: over 5 years ago

10.1007/s00404-019-05336-0

Changes in intestinal microflora in digestive tract diseases during pregnancy
Cited by: 20
Author(s): Min Jin, Dong Li, Rui Ji, Wen Li, Xiaofei Xu, Yanqing Li
Software Mentions: 4
Published: over 6 years ago

10.3389/fcimb.2017.00317

Global Epidemiology of Dengue Outbreaks in 1990–2015: A Systematic Review and Meta-Analysis
Cited by: 220
Author(s): Congcong Guo, Zixing Zhou, Zihao Wen, Yumei Liu, Chengli Zeng, Di Xiao, Minglin Ou, Yuge Han, Shiqi Huang, Dandan Liu, Xiaohong Ye, Xiaoqian Zou, Jing Wu, Huanyu Wang, Eddy Y. Zeng, Chunxia Jing, Guang Yang
Software Mentions: 4
Published: about 9 years ago

10.3389/fgene.2020.00796

Genome-Wide Profiling of Alternative Splicing Signature Reveals Prognostic Predictor for Esophageal Carcinoma
Cited by: 5
Author(s): Jian-Rong Sun, Chen-Fan Kong, Yanni Lou, Ran Yu, Xiang-Ke Qu, Liqun Jia
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2019.01036

Profiling Transcriptional Regulation and Functional Roles of Schistosoma mansoni c-Jun N-Terminal Kinase
Cited by: 5
Author(s): Sandra Grossi Gava, Naiara Clemente Tavares, Franco H. Falcone, Guilherme Oliveira, Marina Moraes Mourão
Software Mentions: 4
Published: almost 7 years ago

10.3389/fgene.2021.658736

A Prognostic Model Based on the Immune-Related lncRNAs in Colorectal Cancer
Cited by: 16
Author(s): Fen Qin, Houxi Xu, Guoli Wei, Ji Yi, Jialin Yu, Canhong Hu, Chunyi Yuan, Yuzhu Ma, Jun Qian, Lingchang Li, Jiege Huo
Software Mentions: 4
Published: over 5 years ago

10.3389/fcimb.2020.00485

Gut Microbiota-Metabolome Changes in Children With Diarrhea by Diarrheagenic E. coli
Cited by: 16
Author(s): Pablo Gallardo, Mariana Izquierdo, Roberto Vidal, Francisco Soto, Juan C. Ossa, Mauricio J. Farfán
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00204-021-03127-8

Fluorescent tagging of endogenous Heme oxygenase-1 in human induced pluripotent stem cells for high content imaging of oxidative stress in various differentiated lineages
Cited by: 11
Author(s): Kirsten E. Snijders, András Fehér, Zsuzsanna Táncos, István Bock, Annamária Téglási, Linda van den Berk, Marije Niemeijer, Peter Bouwman, Sylvia E. Le Dévédec, Martijn J. Moné, Rob Van Rossom, Manoj Kumar, Anja Wilmes, Paul Jennings, Cathérine Verfaillie, Julianna Kobolák, Bas ter Braak, András Dinnyés, Bob van de Water
Software Mentions: 4
Published: almost 5 years ago

10.3389/fendo.2021.665666

Comprehensive Analysis of the Expression and Prognostic Value of SPINT1/2 in Breast Carcinoma
Cited by: 3
Author(s): Qi Wu, Guang Yin, Jing Luo, Yingzi Zhang, Tiantian Ai, Jiao Tian, Yudi Jin, Jinwei Lei, Shengchun Liu
Software Mentions: 4
Published: about 5 years ago

10.3389/fendo.2019.00135

Popular Diabetes Apps and the Impact of Diabetes App Use on Self-Care Behaviour: A Survey Among the Digital Community of Persons With Diabetes on Social Media
Cited by: 69
Author(s): Mihiretu Kebede, Claudia R. Pischke
Software Mentions: 4
Published: over 7 years ago

10.3389/fcimb.2020.00086

Methodological Insight Into Mosquito Microbiome Studies
Cited by: 12
Author(s): Sonia M. Rodríguez‐Ruano, Eliška Juhaňáková, Jakub Vávra, Eva Nováková
Software Mentions: 4
Published: over 6 years ago

10.3389/fcimb.2019.00225

Cepharanthine Hydrochloride Improves Cisplatin Chemotherapy and Enhances Immunity by Regulating Intestinal Microbes in Mice
Cited by: 25
Author(s): Pengjun Zhou, Ziyao Li, Dandan Xu, Ying Wang, Qi Bai, Yulin Feng, Guifeng Su, Pengxiao Chen, Yao Wang, Huizhong Liu, Xiaogang Wang, Zhang Rong, Yifei Wang
Software Mentions: 4
Published: about 7 years ago

10.3389/fendo.2020.581768

Identification of the Biomarkers and Pathological Process of Heterotopic Ossification: Weighted Gene Co-Expression Network Analysis
Cited by: 7
Author(s): Shuang Wang, Jun Tian, Jianzhong Wang, Sizhu Liu, Lianwei Ke, Chaojiang Shang, Jichun Yang, Lin Wang
Software Mentions: 4
Published: over 5 years ago

10.3389/fcimb.2018.00181

Macrophage Activation Marker Neopterin: A Candidate Biomarker for Treatment Response and Relapse in Visceral Leishmaniasis
Cited by: 14
Author(s): Anke E Kip, Monique Wasunna, Fabiana Alves, Jan H.M. Schellens, Jos H. Beijnen, Ahmed Musa, E. A. G. Khalil, Thomas P. C. Dorlo
Software Mentions: 4
Published: about 8 years ago

10.1186/s40168-018-0610-5

The bacterial community significantly promotes cast iron corrosion in reclaimed wastewater distribution systems
Cited by: 30
Author(s): Guijuan Zhang, Bing Li, Jie Liu, Mingqiang Luan, Yao Long, Xiaotao Jiang, Ke Yu, Yuntao Guan
Software Mentions: 4
Published: over 7 years ago

10.3389/fendo.2020.606530

Gastrointestinal Helminth Infection Improves Insulin Sensitivity, Decreases Systemic Inflammation, and Alters the Composition of Gut Microbiota in Distinct Mouse Models of Type 2 Diabetes
Cited by: 15
Author(s): Zainab Khudhair, Rafid Alhallaf, Ramon M. Eichenberger, Jen Whan, Andreas Kupz, Matthew A. Field, Lutz Krause, David T. Wilson, Norelle L. Daly, Paul Giacomin, Javier Sotillo, Alex Loukas
Software Mentions: 4
Published: over 5 years ago

10.3389/fendo.2021.705154

Weighted Gene Co-Expression Network Analysis Identifies ANGPTL4 as a Key Regulator in Diabetic Cardiomyopathy via FAK/SIRT3/ROS Pathway in Cardiomyocyte
Cited by: 8
Author(s): Lei Dai, Yang Xie, Wenjun Zhang, Xiaodan Zhong, Mengwen Wang, Hongchen Jiang, Zhen He, Xiaolei Liu, Hesong Zeng, Hongjie Wang
Software Mentions: 4
Published: almost 5 years ago

10.1007/s00204-018-2178-z

Dynamic imaging of adaptive stress response pathway activation for prediction of drug induced liver injury
Cited by: 45
Author(s): Steven Wink, Steven Hiemstra, Suzanna Huppelschoten, Janna E. Klip, Bob van de Water
Software Mentions: 4
Published: over 8 years ago

10.1007/s00204-016-1781-0

High-content imaging-based BAC-GFP toxicity pathway reporters to assess chemical adversity liabilities
Cited by: 50
Author(s): Steven Wink, Steven Hiemstra, Bram Herpers, Bob van de Water
Software Mentions: 4
Published: about 10 years ago

10.1186/s40168-020-00986-8

Acquisition of oral microbiota is driven by environment, not host genetics
Cited by: 31
Author(s): Chiranjit Mukherjee, Christina O. Moyer, Heidi M. Steinkamp, Shahr B. Hashmi, Clifford J. Beall, Xiaohan Guo, Ai Ni, Eugene J. Leys, Ann L. Griffen
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-020-00867-0

VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
Cited by: 394
Author(s): Kristopher Kieft, Zhichao Zhou, Karthik Anantharaman
Software Mentions: 4
Published: about 6 years ago

10.1186/s40168-020-00997-5

Rhizosphere community selection reveals bacteria associated with reduced root disease
Cited by: 96
Author(s): Chuntao Yin, Juan M. Casa Vargas, Daniel Schlatter, Christina H. Hagerty, Scot H. Hulbert, T. C. Paulitz
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-019-6188-x

Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale
Cited by: 26
Author(s): Meryl Vila Nova, Kévin Durimel, Kévin La, Arnaud Felten, Philippe Bessières, Michel‐Yves Mistou, Mahendra Mariadassou, Nicolas Radomski
Software Mentions: 4
Published: almost 7 years ago

10.1155/2020/4980609

The Important Role of Perituberal Tissue in Epileptic Patients with Tuberous Sclerosis Complex by the Transcriptome Analysis
Cited by: 3
Author(s): Shuqiang Li, Huijie Shao, Liansheng Chang
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-018-0537-x

Root exudates drive the soil-borne legacy of aboveground pathogen infection
Cited by: 294
Author(s): Jun Yuan, Jun Zhao, Teng Wen, Mingwen Zhao, Rong Li, Pim Goossens, Qiwei Huang, Yang Bai, Jorge M. Vivanco, George A. Kowalchuk, Roeland L. Berendsen
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-021-01082-1

Diurnal variation in the human skin microbiome affects accuracy of forensic microbiome matching
Cited by: 10
Author(s): David E. Wilkins, Xinzhao Tong, Marcus H. Y. Leung, Christopher E. Mason, Patrick K. H. Lee
Software Mentions: 4
Published: about 5 years ago

10.1007/s12110-020-09368-3

Effects of Individual Mortality Experience on Out-of-Wedlock Fertility in Eighteenth- and Nineteenth-Century Krummhörn, Germany
Cited by: 1
Author(s): Katharina Pink, Kai P. Willführ, Eckart Voland, Paul Puschmann
Software Mentions: 4
Published: about 6 years ago

10.1186/s40246-019-0247-x

Transcriptomic analysis of monocytes from HIV-positive men on antiretroviral therapy reveals effects of tobacco smoking on interferon and stress response systems associated with depressive symptoms
Cited by: 6
Author(s): David R. Lorenz, Vikas Misra, Dana Gabuzda
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.203184

The circadian clock is associated with prognosis and immune infiltration in stomach adenocarcinoma
Cited by: 13
Author(s): Zhihao Huang, Aoxiao He, Jiakun Wang, Hongmei Lü, Rongguiyi Zhang, Linquan Wu, Qian Feng
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-021-01048-3

Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
Cited by: 28
Author(s): Dieter M. Tourlousse, Koji Narita, Takamasa Miura, Mitsuo Sakamoto, Akiko Ohashi, Keita Shiina, Masami Matsuda, Daisuke Miura, Mamiko Shimamura, Yoshifumi Ohyama, Atsushi Yamazoe, Yuichi Uchino, Keishi Kameyama, Shingo Arioka, Jiro Kataoka, Takayoshi Hisada, Kazuyuki Fujii, Shunsuke Takahashi, Miho Kuroiwa, Masatomo Rokushima, Mitsue Nishiyama, Yoshiki Tanaka, Takuya Fuchikami, Hitomi Aoki, Satoshi Kira, Ryo Koyanagi, Takeshi Naito, Morie Nishiwaki, Hirotaka Kumagai, Mikiko Konda, Keiji Kasahara, Moriya Ohkuma, Hiroko Kawasaki, Yuji Sekiguchi, Jun Terauchi
Software Mentions: 4
Published: over 5 years ago

10.1186/s40246-018-0170-6

Forward and reverse mutations in stages of cancer development
Cited by: 11
Author(s): Taobo Hu, Yogesh Kumar, Shazia Iram, Si Duan, Yang Li, Lei Chen, Jinfei Chen, Rong Yin, Ava Kwong, Gilberto Ka Kit Leung, Wai Kin Mat, Zhenggang Wu, Xi Long, Colin Chan, Si Chen, Peggy Lee, Siu Kin Ng, Timothy Y. C. Ho, Jianfeng Yang, Xueliang Ding, Suk Ying Tsang, Xinrui Zhou, Danhua Zhang, Enbo Zhou, Lin Xu, Wai-sang Poon, Hongyang Wang, Hong Xue
Software Mentions: 4
Published: about 8 years ago

10.1186/s40168-019-0715-5

Active eukaryotes in drinking water distribution systems of ground and surface waterworks
Cited by: 21
Author(s): Jenni Inkinen, Balamuralikrishna Jayaprakash, Sallamaari Siponen, Anna-Maria Hokajärvi, Anna Pursiainen, Jenni Ikonen, Ivan Ryzhikov, Martin Täubel, Ari Kauppinen, Jussi Paananen, Ilkka T. Miettinen, Eila Torvinen, Mikko Kolehmainen, Tarja Pitkänen
Software Mentions: 4
Published: about 7 years ago

10.1186/s12864-021-07412-9

Investigation of ancestral alleles in the Bovinae subfamily
Cited by: 2
Author(s): Maulana M. Naji, Yuri Tani Utsunomiya, Johann Sölkner, Benjamin D. Rosen, Gábor Mészáros
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-017-0356-5

Indoor microbiota in severely moisture damaged homes and the impact of interventions
Cited by: 38
Author(s): Balamuralikrishna Jayaprakash, Rachel I. Adams, Pirkka V. Kirjavainen, Anne M. Karvonen, Asko Vepsäläinen, Maria Valkonen, Kati Järvi, Michael Sulyok, Juha Pekkanen, Anne Hyvärinen, Martin Täubel
Software Mentions: 4
Published: almost 9 years ago

10.1186/s40168-018-0446-z

Reproducible protocols for metagenomic analysis of human faecal phageomes
Cited by: 127
Author(s): Andrey N. Shkoporov, Feargal J. Ryan, Lorraine A. Draper, Amanda Forde, Stephen R. Stockdale, Karen Daly, Siobhan A. McDonnell, James A. Nolan, Thomas D.S. Sutton, Marion Dalmasso, A. McCann, R. Paul Ross, Colin Hill
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-021-07559-5

Effect of genome composition and codon bias on infectious bronchitis virus evolution and adaptation to target tissues
Cited by: 8
Author(s): Giovanni Franzo, Claudia Maria Tucciarone, Matteo Legnardi, Mattia Cecchinato
Software Mentions: 4
Published: over 5 years ago

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