cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1128/mSystems.01048-20

Essential Amino Acid Enrichment and Positive Selection Highlight Endosymbiont's Role in a Global Virus-Vectoring Pest
Cited by: 3
Author(s): Kaitlyn N. Myers, Daniel Conn, Amanda M. V. Brown
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2012.00202

A High-Throughput Method for Illumina RNA-Seq Library Preparation
Cited by: 134
Author(s): Ravi Kumar, Yasunori Ichihashi, Seisuke Kimura, Daniel H. Chitwood, Lauren R. Headland, Jie Peng, Julin N. Maloof, Neelima Sinha
Software Mentions: 4
Published: over 14 years ago

10.3389/fpls.2018.00322

Genetic and Developmental Basis for Increased Leaf Thickness in the Arabidopsis Cvi Ecotype
Cited by: 21
Author(s): Viktoriya Coneva, Daniel H. Chitwood
Software Mentions: 4
Published: over 8 years ago

10.1128/mSystems.00522-20

Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants
Cited by: 69
Author(s): John Leech, Raúl Cabrera‐Rubio, Aaron M. Walsh, Guerrino Macori, Calum J. Walsh, Wiley Barton, Laura Finnegan, Fiona Crispie, Órla O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.612382

High-Resolution Transcriptome Atlas and Improved Genome Assembly of Common Buckwheat, Fagopyrum esculentum
Cited by: 15
Author(s): Aleksey A. Penin, Artem S. Kasianov, Anna V. Klepikova, Ilya Kirov, Evgeny S. Gerasimov, А Н Фесенко, Maria D. Logacheva
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-019-5779-x

Genome-wide enhancer annotations differ significantly in genomic distribution, evolution, and function
Cited by: 39
Author(s): Mary Lauren Benton, Sai Charan Talipineni, Dennis Kostka, John A. Capra
Software Mentions: 4
Published: about 7 years ago

10.1128/mSystems.00834-20

Infant Skin Bacterial Communities Vary by Skin Site and Infant Age across Populations in Mexico and the United States
Cited by: 16
Author(s): Melissa B. Manus, Sahana Kuthyar, Ana Gabriela Perroni‐Marañón, Alejandra Núñez‐de la Mora, Katherine R. Amato
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2016.01651

Modeling the Morphometric Evolution of the Maize Shoot Apical Meristem
Cited by: 10
Author(s): Samuel Leiboff, Christopher K. DeAllie, Michael J. Scanlon
Software Mentions: 4
Published: over 9 years ago

10.1128/mSystems.00640-20

Stability of the Virome in Lab- and Field-Collected Aedes albopictus Mosquitoes across Different Developmental Stages and Possible Core Viruses in the Publicly Available Virome Data of Aedes Mosquitoes
Cited by: 34
Author(s): Chengying Shi, Lu Zhao, Evans Atoni, Weihua Zeng, Xiaomin Hu, Jelle Matthijnssens, Zhiming Yuan, Han Xia
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.580136

Retrospective Quantitative Genetic Analysis and Genomic Prediction of Global Wheat Yields
Cited by: 7
Author(s): Philomin Juliana, Ravi P. Singh, Hans‐Joachim Braun, Julio Huerta‐Espino, Leonardo Crespo‐Herrera, Thomas Payne, Jesse Poland, Sandesh Shrestha, Uttam Kumar, Arun Kumar Joshi, Muhammad Imtiaz, Mohammad Zillur Rahman, Fernando H. Toledo
Software Mentions: 4
Published: almost 6 years ago

10.1128/mSystems.00471-20

Press Disturbance Alters Community Structure and Assembly Mechanisms of Bacterial Taxa and Functional Genes in Mesocosm-Scale Bioreactors
Cited by: 14
Author(s): Ezequiel Santillan, Florentin Constancias, Stefan Wuertz
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2021.619634

Comparative Metabolite and Gene Expression Analyses in Combination With Gene Characterization Revealed the Patterns of Flavonoid Accumulation During Cistus creticus subsp. creticus Fruit Development
Cited by: 6
Author(s): Neda Aničić, Efstathia Patelou, Antigoni Papanikolaou, Anthi Kanioura, Camilla Valdesturli, Panagiotis Arapitsas, Marijana Škorić, Milan Dragićević, Uroš Gašić, Αθανάσιος Κουκουνάρας, Stefanos Kostas, Eirini Sarrou, Stefan Martens, Danijela Mišić, Angelos K. Kanellis
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.660658

Substrate Type Influences the Structure of Epiphyte Communities and the Growth of Posidonia oceanica Seedlings
Cited by: 1
Author(s): Davide De Battisti, Elena Balestri, G. Pardi, Virginia Menicagli, Claudio Lardicci
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2021.679428

Altitudinal Zonation of Green Algae Biodiversity in the French Alps
Cited by: 17
Author(s): Adeline Stewart, Delphine Rioux, Frédéric Boyer, Ludovic Gielly, François Pompanon, Amélie Saillard, Wilfried Thuiller, Jean-Gabriel Valay, Éric Maréchal, Éric Coissac
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2021.644402

Construction of ddRADseq-Based High-Density Genetic Map and Identification of Quantitative Trait Loci for Trans-resveratrol Content in Peanut Seeds
Cited by: 12
Author(s): Huaiyong Luo, Jianbin Guo, Bin Yu, Weigang Chen, Huan Zhang, Xiaojing Zhou, Yuning Chen, Li Huang, Nian Liu, Xiaoping Ren, Liying Yan, Dongxin Huai, Yong Lei, Boshou Liao, Huifang Jiang
Software Mentions: 4
Published: over 5 years ago

10.3390/metabo10120518

Using Community Science to Reveal the Global Chemogeography of River Metabolomes
Cited by: 21
Author(s): Vanessa Garayburu‐Caruso, Robert Danczak, James C. Stegen, Lupita Renteria, Marcy L. McCall, Amy Goldman, Rosalie K. Chu, Jason Toyoda, Charles T. Resch, Joshua M. Torgeson, Jacqueline Wells, Sarah Fansler, Swatantar Kumar, Emily B. Graham
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00912

More Filtering on SNP Calling Does Not Remove Evidence of Inter-Nucleus Recombination in Dikaryotic Arbuscular Mycorrhizal Fungi
Cited by: 6
Author(s): Eric C. Chen, Stephanie Mathieu, Anne Hoffrichter, Jeanne Ropars, Steven Dreißig, Joerg Fuchs, Andreas Brachmann, Nicolas Corradi
Software Mentions: 4
Published: almost 6 years ago

10.1007/s11306-017-1259-y

Non-invasive real time monitoring of yeast volatilome by PTR-ToF-MS
Cited by: 20
Author(s): Iuliia Khomenko, Irene Stefanini, Luca Cappellin, Valentina Cappelletti, Pietro Franceschi, Duccio Cavalieri, T.D. Märk, Franco Biasioli
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13287-019-1218-9

Mesenchymal stem cells transplanted into spinal cord injury adopt immune cell-like characteristics
Cited by: 25
Author(s): Ramil Hakim, Ruxandra Covacu, Vasilios Zachariadis, Arvid Frostell, Sreenivasa Raghavan Sankavaram, Lou Brundin, Mikael Svensson
Software Mentions: 4
Published: about 7 years ago

10.3389/fpls.2020.500479

Contrasting Dependencies of Photosynthetic Capacity on Leaf Nitrogen in Early- and Late-Successional Tropical Montane Tree Species
Cited by: 8
Author(s): Camille Ziegler, Mirindi Eric Dusenge, Brigitte Nyirambangutse, Etienne Zibera, Göran Wallin, Johan Uddling
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpsyg.2020.579267

Uncertain About Uncertainty: How Qualitative Expressions of Forecaster Confidence Impact Decision-Making With Uncertainty Visualizations
Cited by: 24
Author(s): Lace Padilla, Maia Powell, Matthew Kay, Jessica Hullman
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyg.2015.01906

Implicit Attitude Toward Caregiving: The Moderating Role of Adult Attachment Styles
Cited by: 16
Author(s): Pietro De Carli, Angela Tagini, Diego Sarracino, Alessandra Santona, Laura Parolin
Software Mentions: 4
Published: over 10 years ago

10.1186/s12967-020-02698-x

Identification of key biomarkers and immune infiltration in systemic lupus erythematosus by integrated bioinformatics analysis
Cited by: 78
Author(s): Xingwang Zhao, Longlong Zhang, Juan Wang, Min Zhang, Zhiqiang Song, Bing Ni, Yi You
Software Mentions: 4
Published: over 5 years ago

10.1186/s13395-020-00227-4

Transgenic mice expressing tunable levels of DUX4 develop characteristic facioscapulohumeral muscular dystrophy-like pathophysiology ranging in severity
Cited by: 31
Author(s): Takako I. Jones, Guo-Liang Chew, Pamela Barraza‐Flores, Spencer Schreier, Monique Ramirez, Ryan D. Wuebbles, Dean J. Burkin, Robert K. Bradley
Software Mentions: 4
Published: about 6 years ago

10.3389/fpubh.2020.00396

Effects of Installing Height-Adjustable Standing Desks on Daily and Domain-Specific Duration of Standing, Sitting, and Stepping in 3rd Grade Primary School Children
Cited by: 3
Author(s): Ole Sprengeler, Antje Hebestreit, Hannah Gohres, Jens Bucksch, Christoph Buck
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpubh.2015.00250

Seasonal Influenza Epidemics and El Niños
Cited by: 13
Author(s): Oluleke Oluwole
Software Mentions: 4
Published: over 10 years ago

10.3389/fspor.2021.713655

The Minimum Effective Training Dose Required for 1RM Strength in Powerlifters
Cited by: 5
Author(s): Patroklos Androulakis-Korakakis, Nick Michalopoulos, James Fisher, Justin W L Keogh, Jeremy P. Loenneke, Eric R. Helms, Milo Wolf, Greg Nuckols, James Steele
Software Mentions: 4
Published: almost 5 years ago

10.1007/s11306-020-1646-7

Identification to species level of live single microalgal cells from plankton samples with matrix-free laser/desorption ionization mass spectrometry
Cited by: 13
Author(s): Tim U. H. Baumeister, Marine Vallet, Filip Kaftan, Laure Guillou, Aleš Svatoš, Georg Pohnert
Software Mentions: 4
Published: over 6 years ago

10.3389/fnsyn.2021.660718

Dichotomic Hippocampal Transcriptome After Glutamatergic vs. GABAergic Deletion of the Cannabinoid CB1 Receptor
Cited by: 0
Author(s): Diego Pascual Cuadrado, Anna Wierczeiko, Charlotte Hewel, Susanne Gerber, Beat Lutz
Software Mentions: 4
Published: about 5 years ago

10.1186/s12967-019-2029-6

Determining the prognostic significance of alternative splicing events in soft tissue sarcoma using data from The Cancer Genome Atlas
Cited by: 11
Author(s): Xia Yang, Wenting Huang, Rong‐Quan He, Jie Ma, Peng Lin, Zucheng Xie, Fuchao Ma, Gang Chen
Software Mentions: 4
Published: almost 7 years ago

10.3389/fvets.2020.00616

An Assessment of the Stability of the Canine Oral Microbiota After Probiotic Administration in Healthy Dogs Over Time
Cited by: 10
Author(s): Sara E. Bell, Andrea K. Nash, Brian M. Zanghi, Cynthia M. Otto, Erin Perry
Software Mentions: 4
Published: almost 6 years ago

10.3389/fvets.2020.00251

Rumen Microbiota Distribution Analyzed by High-Throughput Sequencing After Oral Doxycycline Administration in Beef Cattle
Cited by: 5
Author(s): Fengmei Chen, Guangcun Cheng, Yan Xu, Yunzhou Wang, Qingxiang Xia, Shiqiang Hu
Software Mentions: 4
Published: about 6 years ago

10.3389/fvets.2021.666887

Replacement of Metaphylactic Antimicrobial Therapy by Oral Administration of Ligilactobacillus salivarius MP100 in a Pig Farm
Cited by: 7
Author(s): Odón J. Sobrino, Claudio Alba, Rebeca Arroyo, Inés Pérez, Lydia Sariego, Susana Delgado, Leónides Fernández, Julián de María, Pilar Fumanal, Antonio J. Fumanal, Juan M. Rodríguez
Software Mentions: 4
Published: about 5 years ago

10.3389/fvets.2021.714143

Providing Humans With Practical, Best Practice Handling Guidelines During Human-Cat Interactions Increases Cats' Affiliative Behaviour and Reduces Aggression and Signs of Conflict
Cited by: 9
Author(s): Camilla Haywood, Lucia Ripari, Jo Puzzo, Rachel Foreman-Worsley, Lauren Finka
Software Mentions: 4
Published: almost 5 years ago

10.3389/fvets.2017.00244

Drivers of Live Cattle Price in the Livestock Trading System of Central Cameroon
Cited by: 3
Author(s): Paolo Carlo Motta, Ian Handel, Gustaf Rydevik, Saidou M. Hamman, Victor Ngu Ngwa, Vincent N. Tanya, K. L. Morgan, Barend M. deC. Bronsvoort, Thibaud Porphyre
Software Mentions: 4
Published: over 8 years ago

10.3390/s20113031

Performance of a Low-Cost Sensor Community Air Monitoring Network in Imperial County, CA
Cited by: 8
Author(s): Paul English, Heather K. Amato, Esther Bejarano, Graeme Carvlin, Humberto Lugo, Michael Jerrett, Galatea King, Daniel Madrigal, Dan Meltzer, Amanda Northcross, Luis José Imedio Olmedo, Edmund Seto, Christian Torres, A. S. Wilkie, Michelle Wong
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-017-3931-z

Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)
Cited by: 15
Author(s): Irina Ćalić, Jennifer Koch, David W. Carey, Charles Addo‐Quaye, John E. Carlson, David B. Neale
Software Mentions: 4
Published: almost 9 years ago

10.3390/s20061778

Estimation of Land Surface Temperature in an Agricultural Region of Bangladesh from Landsat 8: Intercomparison of Four Algorithms
Cited by: 11
Author(s): Qutub Uddin Sajib, Tao Wang
Software Mentions: 4
Published: over 6 years ago

10.1186/s12983-019-0327-8

Small-scale phenotypic differentiation along complex stream gradients in a non-native amphipod
Cited by: 13
Author(s): Jonas Jourdan, Kathrin Piro, Alexander Weigand, Martin Plath
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12983-021-00416-x

Lack of impact of radiation on blood physiology biomarkers of Chernobyl tree frogs
Cited by: 5
Author(s): Pablo Burraco, Jean‐Marc Bonzom, Clément Car, K. Beaugelin-Seiller, Sergey Gashchak, Germán Orizaola
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12983-021-00388-y

Density-dependence of nestling immune function and physiological condition in semi-precocial colonial bird: a cross-fostering experiment
Cited by: 5
Author(s): Maciej Kamiński, Tomasz Janiszewski, Piotr Indykiewicz, Jacek J. Nowakowski, Jarosław Kowalski, Beata Dulisz, Piotr Minias
Software Mentions: 4
Published: over 5 years ago

10.2217/fvl-2020-0256

Epidemiologic features and clinical course of COVID-19: a retrospective analysis of 19 patients in Germany
Cited by: 1
Author(s): Sara Elgamasy, Eman El-Sayed Sakr, Mohamed Gomaa Kamel, Sherief Ghozy, Ghadeer Gamal Elsayed, Mostafa Mahmoud Fahmy, Ahmed Ghazy, Mohamed M. Ibrahim, Mostafa Ebraheem Morra
Software Mentions: 4
Published: over 5 years ago

10.1534/g3.113.009431

gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images
Cited by: 99
Author(s): Omar Wagih, Leopold Parts
Software Mentions: 4
Published: over 12 years ago

10.1534/g3.113.009514

Genomics of CpG Methylation in Developing and Developed Zebrafish
Cited by: 40
Author(s): David McGaughey, Hatice Özel Abaan, Ryan M. Miller, Peter Kropp, Lawrence C. Brody
Software Mentions: 4
Published: about 12 years ago

10.1186/s12864-021-07494-5

Genome-wide analysis of spatiotemporal expression patterns during rice leaf development
Cited by: 2
Author(s): Masayuki Miya, Takanori Yoshikawa, Yutaka Satō, Jun-Ichi Itoh
Software Mentions: 4
Published: over 5 years ago

10.1111/1751-7915.13393

Black soldier fly larvae (Hermetia illucens) strengthen the metabolic function of food waste biodegradation by gut microbiome
Cited by: 107
Author(s): Cheng-Liang Jiang, Wei-Zheng Jin, Xin-Hua Tao, Qian Zhang, Jun Zhu, Shiyun Feng, Xinhua Xu, Hongyi Li, Zehua Wang, Zhijian Zhang
Software Mentions: 4
Published: over 7 years ago

10.1534/g3.117.042531

Genome-Wide Exome Analysis of Cmv5-Disparate Mouse Strains that Differ in Host Resistance to Murine Cytomegalovirus Infection
Cited by: 3
Author(s): Alyssa Gillespie, Heather Lee, Catherine Robertson, Maya Cabot, Michael G. Brown
Software Mentions: 4
Published: about 9 years ago

10.1126/science.abe3261

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events
Cited by: 215
Author(s): Jacob E. Lemieux, Katherine J. Siddle, Bennett Shaw, Christine Loreth, Stephen F. Schaffner, Adrianne Gladden-Young, Gordon Adams, Timelia Fink, Christopher H. Tomkins-Tinch, Lydia A. Krasilnikova, Katherine C. DeRuff, Melissa Rudy, Matthew R. Bauer, Kim A. Lagerborg, Erica Normandin, Sinéad B. Chapman, Steven K. Reilly, Melis N. Anahtar, Aaron E. Lin, Amber Carter, Cameron Myhrvold, Molly Kemball, Sushma Chaluvadi, Caroline Cusick, Katelyn Flowers, Anna Neumann, Felecia Cerrato, Maha Farhat, Damien Slater, Jason B. Harris, John A. Branda, David C. Hooper, Jessie M. Gaeta, Travis P. Baggett, James J. O’Connell, Andreas Gnirke, Tami D. Lieberman, Anthony Philippakis, Meagan Burns, Catherine Brown, Jeremy Luban, Edward T. Ryan, Sarah E Turbett, Regina C. LaRocque, William P. Hanage, Glen R. Gallagher, Lawrence C. Madoff, Sandra Smole, Virginia Pierce, Eric S. Rosenberg, Pardis C. Sabeti, Daniel J. Park, Bronwyn MacInnis
Software Mentions: 4
Published: over 5 years ago

10.1111/1751-7915.13353

Microbial communities in swine lungs and their association with lung lesions
Cited by: 24
Author(s): Tao Huang, Mingpeng Zhang, Xinkai Tong, Jiaqi Chen, Guorong Yan, Shouguo Fang, Yuanmei Guo, Bin Yang, Shijun Xiao, Congying Chen, Lusheng Huang, Huashui Ai
Software Mentions: 4
Published: over 7 years ago

10.1534/g3.117.300245

Genome-Wide Screen forSaccharomyces cerevisiaeGenes Contributing to Opportunistic Pathogenicity in an Invertebrate Model Host
Cited by: 7
Author(s): Sujal Phadke, Calum J. Maclean, Serena Zhao, Emmi A. Mueller, Lucas A. Michelotti, Kaitlyn L. Norman, Anuj Kumar, Timothy Y. James
Software Mentions: 4
Published: over 8 years ago

10.1534/g3.118.200127

Comparison of the Relative Potential for Epigenetic and Genetic Variation To Contribute to Trait Stability
Cited by: 23
Author(s): Emma Sofie Timm Aller, Lea Møller Jagd, Daniel J. Kliebenstein, Meike Burow
Software Mentions: 4
Published: about 8 years ago

10.1534/g3.117.300550

Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (Lolium perenne L.)
Cited by: 8
Author(s): Rachel F. Begheyn, Steven Yates, Timothy Sykes, Bruno Studer
Software Mentions: 4
Published: about 8 years ago

10.1126/scitranslmed.aau6242

Estimating cholera incidence with cross-sectional serology
Cited by: 43
Author(s): Andrew S. Azman, Justin Lessler, Francisco J. Luquero, Taufiqur Rahman Bhuiyan, Ashraful Islam Khan, Fahima Chowdhury, Alamgir Kabir, Marc Gurwith, Ana A. Weil, Jason B. Harris, Stephen B. Calderwood, Edward T. Ryan, Firdausi Qadri, Daniel T. Leung
Software Mentions: 4
Published: over 7 years ago

10.1186/s12934-021-01658-4

Transcriptomics reveal different metabolic strategies for acid resistance and gamma-aminobutyric acid (GABA) production in select Levilactobacillus brevis strains
Cited by: 7
Author(s): Sagarika Banerjee, M. H. Poore, Svetlana Gerdes, Derek Nedveck, Lene Lauridsen, Heidi Thomsen Kristensen, Henrik Max Jensen, Phillip M. Byrd, Arthur C. Ouwehand, Elaine Patterson, Wesley Morovic
Software Mentions: 4
Published: almost 5 years ago

10.18632/genesandcancer.188

Transcriptomic analysis functionally maps the intrinsically disordered domain of EWS/FLI and reveals novel transcriptional dependencies for oncogenesis
Cited by: 15
Author(s): Emily R. Theisen, Kyle R. Miller, Iftekhar A. Showpnil, Cenny Taslim, Kathleen I. Pishas, Stephen L. Lessnick
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-99205-z

The effect of non-surgical and surgical mechanical root debridement on infrabony defects: a retrospective study
Cited by: 0
Author(s): Jad Majzoub, Ali Salami, Shayan Barootchi, Lorenzo Tavelli, Hsun‐Liang Chan, Hom‐Lay Wang
Software Mentions: 4
Published: over 4 years ago

10.1038/s41436-019-0519-9

Comorbidity landscape of the Danish patient population affected by chromosome abnormalities
Cited by: 10
Author(s): Isabella Friis Jørgensen, Francesco Russo, Anders B. Jensen, David Westergaard, Mette Lademann, Jessica Xin Hu, Søren Brunak, Kirstine Belling
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-99104-3

Microbiome signature and diversity regulates the level of energy production under anaerobic condition
Cited by: 16
Author(s): M. Shaminur Rahman, M. Nazmul Hoque, J. Akter Puspo, M. Rafiul Islam, Niloy Das, Mohammad Anwar Siddique, Md. Anwar Hossain, Munawar Sultana
Software Mentions: 4
Published: over 4 years ago

10.1590/1678-4685-GMB-2019-0090

Integrated analysis of lncRNA-associated ceRNA network identified potential regulatory interactions in osteosarcoma
Cited by: 4
Author(s): Yongwei Wang, Yaxian Gao, Sen Guo, Zhihong Chen
Software Mentions: 4
Published: over 6 years ago

10.1590/1678-4685-GMB-2020-0047

The impact of post-alignment processing procedures on whole-exome sequencing data
Cited by: 0
Author(s): Murilo Guimarães Borges, Helena Tadiello de Moraes, Cristiane S. Rocha, Íscia Lopes‐Cendes
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-99127-w

Lung microbiome of stable and exacerbated COPD patients in Tshwane, South Africa
Cited by: 10
Author(s): Tanweer Goolam Mahomed, Rph Peters, Mushal Allam, Arshad Ismail, Senzo Mtshali, Akhter Goolam Mahomed, Veronica Ueckermann, Marleen M. Kock, M.M. Ehlers
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-021-99261-5

Severe vegetation degradation associated with different disturbance types in a poorly managed urban recreation destination in Iran
Cited by: 5
Author(s): Mohammad Bagher Erfanian, Juha M. Alatalo, Hamid Ejtehadi
Software Mentions: 4
Published: over 4 years ago

10.1007/s00248-021-01719-6

Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding
Cited by: 8
Author(s): Camila Duarte Ritter, Dominik Forster, Josué A. R. Azevedo, Alexandre Antonelli, R. Henrik Nilsson, Martha E. Trujillo, Micah Dunthorn
Software Mentions: 4
Published: over 5 years ago

10.1007/s00248-019-01424-5

Early Colonization of Weathered Polyethylene by Distinct Bacteria in Marine Coastal Seawater
Cited by: 81
Author(s): Gabriel Erni-Cassola, Robyn J. Wright, Matthew I. Gibson, Joseph Alexander Christie-Oleza
Software Mentions: 4
Published: almost 7 years ago

10.1534/genetics.120.303080

Multiple QTL Mapping in Autopolyploids: A Random-Effect Model Approach with Application in a Hexaploid Sweetpotato Full-Sib Population
Cited by: 35
Author(s): Guilherme da Silva Pereira, Dorcus C. Gemenet, Marcelo Mollinari, Bode A. Olukolu, Joshua C. Wood, Federico Díaz, Veronica Mosquera, Wolfgang J. Grüneberg, Awais Khan, C. Robin Buell, G. Craig Yencho, Zhao‐Bang Zeng
Software Mentions: 4
Published: almost 6 years ago

10.1186/gb-2013-14-12-r147

Development of an Illumina-based ChIP-exonuclease method provides insight into FoxA1-DNA binding properties
Cited by: 77
Author(s): Aurélien A. Sérandour, Gordon D. Brown, Joshua D. Cohen, Jason S. Carroll
Software Mentions: 4
Published: over 13 years ago

10.1186/gb-2013-14-4-r31

Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity
Cited by: 368
Author(s): Yohei Sasagawa, Itoshi Nikaido, Tetsutaro Hayashi, Hiroki Danno, Kenichiro D. Uno, Takeshi Imai, Hiroki R. Ueda
Software Mentions: 4
Published: about 13 years ago

10.1186/s13059-015-0590-8

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
Cited by: 175
Author(s): Amelia Hubbard, Clare M. Lewis, Kentaro Yoshida, Ricardo H. Ramírez-González, C. de Vallavieille‐Pope, Jane Thomas, Sophien Kamoun, R. A. Bayles, Cristóbal Uauy, Diane G. O. Saunders
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-021-98979-6

Biodiversity and biocatalyst activity of culturable hydrocarbonoclastic fungi isolated from Marac–Moruga mud volcano in South Trinidad
Cited by: 1
Author(s): Amanda C. Ramdass, Sephra N. Rampersad
Software Mentions: 4
Published: over 4 years ago

10.1186/s13059-016-1014-0

The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum
Cited by: 83
Author(s): Evelien M. Bunnik, Gayani Batugedara, Anita Saraf, Jacques Prudhomme, Laurence Florens, Karine G. Le Roch
Software Mentions: 4
Published: almost 10 years ago

10.1186/s13059-016-1053-6

Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms
Cited by: 114
Author(s): Roderick C. Slieker, Maarten van Iterson, René Luijk, Marian Beekman, Daria V. Zhernakova, Matthijs Moed, Hailiang Mei, M.A. van Galen, Patrick Deelen, Marc Jan Bonder, Alexandra Zhernakova, André G. Uitterlinden, Ettje F. Tigchelaar, Coen D. A. Stehouwer, Casper G. Schalkwijk, Carla Kallen, Albert Hofman, Diana van Heemst, Eco J. C. de Geus, Jenny van Dongen, Joris Deelen, Leonard H van den Berg, Joyce B. J. van Meurs, Ritsert C. Jansen, Peter A.C. ’t Hoen, Lude Franke, Cisca Wijmenga, Jan H. Veldink, Morris A. Swertz, Marleen M.J. van Greevenbroek, Cornelia M. van Duijn, Dorret I. Boomsma, P. Eline Slagboom, Bastiaan T. Heijmans
Software Mentions: 4
Published: almost 10 years ago

10.1186/s13059-016-1140-8

Dual RNA-seq reveals viral infections in asthmatic children without respiratory illness which are associated with changes in the airway transcriptome
Cited by: 54
Author(s): Agata Wesolowska-Andersen, Jamie L. Everman, Rebecca M. Davidson, Cydney Rios, Rachelle Herrin, Celeste Eng, William J. Janssen, Andrew H. Liu, Sam S. Oh, Rajesh Kumar, Tasha E. Fingerlin, José Rodríguez‐Santana, Esteban G. Burchard, Max A. Seibold
Software Mentions: 4
Published: over 9 years ago

10.1186/s13059-017-1328-6

Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS
Cited by: 49
Author(s): Hung‐Ying Lin, Qiang Liu, Li Xiao, Jinliang Yang, Sanzhen Liu, Yinlian Huang, Michael J. Scanlon, Dan Nettleton, Patrick S. Schnable
Software Mentions: 4
Published: over 8 years ago

10.1186/s13059-018-1392-6

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions
Cited by: 99
Author(s): Paul Bailey, Christian Schudoma, William J. Jackson, Erin Baggs, Gulay Dagdas, Wilfried Haerty, Matthew J. Moscou, Ksenia V. Krasileva
Software Mentions: 4
Published: over 8 years ago

10.1186/s13059-018-1551-9

Alternative polyadenylation factors link cell cycle to migration
Cited by: 21
Author(s): Mithun Mitra, Elizabeth L. Johnson, Vinay Swamy, Lois E Nersesian, David C. Corney, David G. Robinson, Daniel Taylor, Aaron M. Ambrus, David Jelínek, Wei Wang, Sandra Batista, Hilary A. Coller
Software Mentions: 4
Published: over 7 years ago

10.1186/s13059-019-1705-4

Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination
Cited by: 31
Author(s): Anne-Sophie Fiorucci, Clara Bourbousse, Lorenzo Concia, Martin Rougée, Anne-Flore Deton-Cabanillas, Gérald Zabulon, Elodie Layat, David Latrasse, Soon Kap Kim, Nicole Chaumont, Bérangère Lombard, David Stroebel, Sophie Lemoine, Ammara Mohammad, Corinne Blugeon, Damarys Loew, Christophe Bailly, Chris Bowler, Moussa Benhamed, Frédy Barneche
Software Mentions: 4
Published: about 7 years ago

10.1186/s13059-020-02183-0

Fission yeast condensin contributes to interphase chromatin organization and prevents transcription-coupled DNA damage
Cited by: 19
Author(s): Yasutaka Kakui, Christopher Barrington, David J. Barry, Tereza Gerguri, Xiao Fu, Paul A. Bates, Bhavin S. Khatri, Frank Uhlmann
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-021-02272-8

A comprehensive enhancer screen identifies TRAM2 as a key and novel mediator of YAP oncogenesis
Cited by: 16
Author(s): Li Li, Alejandro P. Ugalde, Colinda L.G.J. Scheele, Sebastian M. Dieter, Remco Nagel, Jin Ma, Abhijeet Pataskar, Gözde Korkmaz, Ran Elkon, Miao‐Ping Chien, You Li, Pin-Rui Su, Onno B. Bleijerveld, Maarten Altelaar, Lyubomir Momchev, Zohar Manber, Ruiqi Han, Pieter C. van Breugel, Rui Lopes, Peter ten Dijke, Jacco van Rheenen, Reuven Agami
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-021-02390-3

Transcription shapes DNA replication initiation to preserve genome integrity
Cited by: 17
Author(s): Yang Liu, Chen Ai, Tingting Gan, Jinchun Wu, Yongpeng Jiang, Xuhao Liu, Ru-Sen Lu, Ning Gao, Qing Li, Ji Xiong, Jiazhi Hu
Software Mentions: 4
Published: about 5 years ago

10.1093/gbe/evw171

Estimating the Effective Sample Size of Tree Topologies from Bayesian Phylogenetic Analyses
Cited by: 49
Author(s): Robert Lanfear, Xia Hua, Dan L. Warren
Software Mentions: 4
Published: almost 10 years ago

10.1038/s41598-021-98907-8

Transcriptomic profiling of the high-vigour maize (Zea mays L.) hybrid variety response to cold and drought stresses during seed germination
Cited by: 12
Author(s): Heqin Li, Haiwang Yue, Jiping Xie, Junzhou Bu, Li Li, Xueying Xin, Yanming Zhao, Haiyan Zhang, Li Yang, Jianhua Wang, Xuwen Jiang
Software Mentions: 4
Published: over 4 years ago

10.1093/gbe/evz158

Geography Shapes the Population Genomics of Salmonella enterica Dublin
Cited by: 19
Author(s): Gavin Fenske, Anil J. Thachil, Patrick L. McDonough, Amy L. Glaser, Joy Scaria
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2019.01862

Catabolism of Alkylphenols in Rhodococcus via a Meta-Cleavage Pathway Associated With Genomic Islands
Cited by: 14
Author(s): David J. Levy‐Booth, Morgan M. Fetherolf, Gordon R. Stewart, Jiu Liu, Lindsay D. Eltis, William W. Mohn
Software Mentions: 4
Published: almost 7 years ago

10.3389/fpls.2020.00993

Plant Microbiomes: Do Different Preservation Approaches and Primer Sets Alter Our Capacity to Assess Microbial Diversity and Community Composition?
Cited by: 14
Author(s): Zhiguang Qiu, Juntao Wang, Manuel Delgado‐Baquerizo, Pankaj Trivedi, Eleonora Egidi, Yi-Min Chen, Haiyang Zhang, Brajesh K. Singh
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40170-021-00257-6

High-resolution spatiotemporal pHe and pO2 imaging in head and neck and oesophageal carcinoma cells
Cited by: 2
Author(s): Alexandra Blancke Soares, Robert J. Meier, Gregor Liebsch, Sabina Schwenk‐Zieger, Martin E. Kirmaier, Sebastian Theurich, Magdalena Widmann, Martin Canis, Olivier Gires, Frank Haubner
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms21155265

New Methodology for the Identification of Metabolites of Saccharides and Cyclitols by Off-Line EC-MALDI-TOF-MS
Cited by: 3
Author(s): Gulyaim Sagandykova, Justyna Walczak-Skierska, Fernanda Monedeiro, Paweł Pomastowski
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0250514

Insights into the microbial diversity and structure in a full-scale municipal wastewater treatment plant with particular regard to Archaea
Cited by: 8
Author(s): Grażyna Płaza, Łukasz Jałowiecki, Dominika Głowacka, Jakub Hubeny, Monika Harnisz, Ewa Korzeniewska
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.7506

Onset of morning activity in bumblebee foragers under natural low light conditions
Cited by: 6
Author(s): Katie Hall, Théo Robert, Kevin J. Gaston, Natalie Hempel de Ibarra
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-018-36984-y

Comparative transcriptome analysis reveals relationship of three major domesticated varieties of Auricularia auricula-judae
Cited by: 15
Author(s): Yuhui Zhao, Liang Wang, Dongshan Zhang, Rong Li, Tianyou Cheng, Yibi Zhang, Liu Xue-ju, Gary Wong, Yuguo Tang, Hui Wang, Shan Gao
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2018.02037

Expression Profile of Glossina pallidipes MicroRNAs During Symptomatic and Asymptomatic Infection With Glossina pallidipes Salivary Gland Hypertrophy Virus (Hytrosavirus)
Cited by: 8
Author(s): Irene K. Meki, İkbal Agah Ince, Henry M. Kariithi, Drion G. Boucias, Orhan Özcan, Andrew G. Parker, Just M. Vlak, Monique M. van Oers, Adly M. M. Abd-Alla
Software Mentions: 4
Published: almost 8 years ago

10.1038/s42003-020-01597-7

Causal evidence for the adaptive benefits of social foraging in the wild
Cited by: 9
Author(s): Lysanne Snijders, Stefan Krause, Alan Novaes Tump, Michael Breuker, Chente Ortiz, Sofia Rizzi, Indar W. Ramnarine, Jens Krause, Ralf H. J. M. Kurvers
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.7500

Hatching date influences winter habitat occupancy: Examining seasonal interactions across the full annual cycle in a migratory songbird
Cited by: 4
Author(s): Michael E. Akresh, David I. King, Peter P. Marra
Software Mentions: 4
Published: about 5 years ago

10.1002/cam4.3854

Identification of MEG8/miR‐378d/SOBP axis as a novel regulatory network and associated with immune infiltrates in ovarian carcinoma by integrated bioinformatics analysis
Cited by: 7
Author(s): Jiang Lei, Zhen-Yu He, Jun Wang, Min Hu, Ping Zhou, Chen-Lu Lian, Hua Li, San‐Gang Wu, Juan Zhou
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.00129

Broad and Fine Scale Variability in Bacterial Diversity and Cyanotoxin Quotas in Benthic Cyanobacterial Mats
Cited by: 8
Author(s): Georgia Thomson‐Laing, Jonathan Puddick, Olivier Laroche, Samantha Fulton, Konstanze Steiner, Mark W. Heath, Susanna A. Wood
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-42733-6

Right hemisphere occipital rTMS impairs working memory in visualizers but not in verbalizers
Cited by: 16
Author(s): Sven Hilbert, Michaela McAssey, Markus Bühner, Patrick Schwaferts, Monika Gruber, Stephan Goerigk, Paul C.J. Taylor
Software Mentions: 4
Published: about 7 years ago

10.1038/s42003-020-0837-0

Single-cell RNA sequencing reveals a heterogeneous response to Glucocorticoids in breast cancer cells
Cited by: 39
Author(s): Jackson A. Hoffman, Brian N. Papas, Kevin W. Trotter, Trevor Archer
Software Mentions: 4
Published: over 6 years ago

10.5414/NP301110

Molecular diagnostic testing of diffuse gliomas in the real-life setting: A practical approach
Cited by: 8
Author(s): Michał Bieńkowski, Adelheid Wöhrer, Patrizia Moser, Melitta Kitzwögerer, Gerda Ricken, Thomas Ströbel, Johannes A. Hainfellner
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.6093

Using genomic information for management planning of an endangered perennial,Viola uliginosa
Cited by: 9
Author(s): Kyung Min Lee, Pertti Ranta, Jarmo Saarikivi, Lado Kutnar, Branko Vreš, М. А. Джус, Marko Mutanen, Laura Kvist
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-35578-y

Gene mutation associated with esl mediates shifts on fungal community composition in rhizosphere soil of rice at grain-filling stage
Cited by: 1
Author(s): Puleng Letuma, Yasir Arafat, Muhammad Mohsin Waqas, Feifan Lin, Wenxiong Lin, Yiyang Zhang, Mamello Masita, Kai Fan, Zhaowei Li
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.5781

Limited seed retention during winter inhibits vegetation establishment in spring, affecting lateral marsh expansion capacity
Cited by: 12
Author(s): M. van Regteren, I. Colosimo, P. de Vries, M.E.B. van Puijenbroek, Victor Sebastiaan Freij, M.J. Baptist, Kelly Elschot
Software Mentions: 4
Published: over 6 years ago

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