Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-020-00867-0

https://doi.org/10.1186/s40168-020-00867-0

VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences

Cited by: 394
Author(s): Kristopher Kieft, Zhichao Zhou, Karthik Anantharaman
Published: over 4 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
pypi: iRep
calcualte iRep replication rates from metagenome sequencing
Papers that mentioned: 29
pypi: Sickle
A lightweight OAI client library for Python
Papers that mentioned: 740