cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fneur.2021.610797

Development of an Immune-Related Prognostic Index Associated With Glioblastoma
Cited by: 4
Author(s): Zhengye Jiang, Yanxi Shi, Wenpeng Zhao, Yaya Zhang, Yuanyuan Xie, Bingchang Zhang, Guowei Tan, Zhanxiang Wang
Software Mentions: 4
Published: about 5 years ago

10.1186/s13068-021-01895-0

Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees
Cited by: 9
Author(s): Madhavi Latha Gandla, Niklas Mähler, Sacha Escamez, Tomas Skotare, Ogonna Obudulu, Linus Möller, Ilka Nacif Abreu, Joakim Bygdell, Magnus Hertzberg, Torgeir R. Hvidsten, Thomas Moritz, Gunnar Wingsle, Johan Trygg, Hannele Tuominen, Leif J. Jönsson
Software Mentions: 4
Published: over 5 years ago

10.1186/s12915-020-00860-x

Spatial and temporal modulation of enterotoxigenic E. coli H10407 pathogenesis and interplay with microbiota in human gut models
Cited by: 15
Author(s): Charlène Roussel, Kim De Paepe, Wessam Galia, Jana De Bodt, Sandrine Chalancon, Françoise Leriche, Nathalie Ballet, Sylvain Denis, Monique Alric, Tom Van de Wiele, Stéphanie Blanquet‐Diot
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2019.02096

Plasmacytoid DCs From Patients With Sjögren's Syndrome Are Transcriptionally Primed for Enhanced Pro-inflammatory Cytokine Production
Cited by: 37
Author(s): Maarten R Hillen, Aridaman Pandit, Sofie L M Blokland, Sarita A. Y. Hartgring, Cornelis P. J. Bekker, Eefje Hanna Martine van der Heijden, Nila Hendrika Servaas, Marzia Rossato, Aike A. Kruize, Joël A G van Roon, Timothy R D J Radstake
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-73146-5

Ancestral function of Inhibitors-of-kappaB regulates Caenorhabditis elegans development
Cited by: 9
Author(s): David Brena, Joan Bertran, Montserrat Porta-de-la-Riva, Yolanda Guillén, Eric Cornes, Dmytro Kukhtar, Lluís Campos-Vicens, Lierni Fernández, Irene Pecharromán, Albert García-López, Abul B.M.M.K. Islam, Laura Marruecos, Anna Bigas, Julián Cerón, Lluís Espinosa
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0223397

Brief communication: Long-term absence of Langerhans cells alters the gene expression profile of keratinocytes and dendritic epidermal T cells
Cited by: 10
Author(s): Qingtai Su, Aurélie Bouteau, Jacob Cardenas, Uthra Balaji, Yuanyaun Wang, Cynthia Smitherman, Jin Gu, Botond Z. Igyártó
Software Mentions: 4
Published: over 6 years ago

10.1038/s41388-019-1047-4

Targeting chemoresistant colorectal cancer via systemic administration of a BMP7 variant
Cited by: 23
Author(s): Veronica Veschi, Laura Rosa Mangiapane, Antonietta Nicotra, Simone Di Franco, Emanuela Scavo, Tiziana Apuzzo, Davide Stefano Sardina, Micol Eleonora Fiori, Antonina Benfante, Maria Luisa Colorito, Gianfranco Cocorullo, Felice Giuliante, Calogero Cipolla, Giuseppe Pistone, Maria Rita Bongiorno, Aroldo Rizzo, Courtney M. Tate, Xiaohua Wu, Scott W. Rowlinson, Louis F. Stancato, Matilde Todaro, Ruggero De Maria, Giorgio Stassi
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.680918

Hippo Pathway Core Genes Based Prognostic Signature and Immune Infiltration Patterns in Lung Squamous Cell Carcinoma
Cited by: 26
Author(s): Chang Gu, Jiafei Chen, Xuening Dang, Chunji Chen, Zhenyu Huang, Weidong Shen, Xin Shi, Chenyang Dai, Chang Chen
Software Mentions: 4
Published: about 5 years ago

10.3390/ani11041002

Differentially Expressed Gene Patterns in Ascarid-Infected Chickens of Higher- or Lower-Performing Genotypes
Cited by: 0
Author(s): Isabel Kilic, Manuel Stehr, Mark Hennies, C. C. Metges, Sören Franzenburg, Clemens Falker‐Gieske, Jens Tetens, Gürbüz Daş
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0004636

Zika Virus Outbreak in Rio de Janeiro, Brazil: Clinical Characterization, Epidemiological and Virological Aspects
Cited by: 239
Author(s): Patrícia Brasil, Guilherme Amaral Calvet, André Machado Siqueira, Mayumi Duarte Wakimoto, Patrícia Carvalho de Sequeira, Aline Araújo Nobre, Marcel de Souza Borges Quintana, Marco Cesar Lima de Mendonça, Otília Lupi, Rogério Valls de Souza, Carolina Romero, Heruza Einsfeld Zogbi, Clarisse da Silveira Bressan, Simone Sampaio Alves, Ricardo Lourenço‐de‐Oliveira, Rita Maria Ribeiro Nogueira, Marília Sá Carvalho, Ana María Bispo de Filippis, Thomas Jaenisch
Software Mentions: 4
Published: about 10 years ago

10.3390/microorganisms9061310

Meropenem Pharmacokinetics and Target Attainment in Critically Ill Patients Are Not Affected by Extracorporeal Membrane Oxygenation: A Matched Cohort Analysis
Cited by: 12
Author(s): Matthias Gijsen, Erwin Dreesen, Pieter Annaert, Johan Nicolaï, Yves Debaveye, Joost Wauters, Isabel Spriet
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8111729

A Large-Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity Regimes
Cited by: 7
Author(s): Kshitij Tandon, Bayanmunkh Baatar, Pei‐Wen Chiang, Dashdondog Narangarvuu, Bolormaa Oyuntsetseg, Sen‐Lin Tang
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.642730

The Composition of Root-Associated Bacteria and Fungi of Astragalus mongholicus and Their Relationship With the Bioactive Ingredients
Cited by: 9
Author(s): Yanmei Li, Yang Liu, Hui Zhang, Yan Yang, Gehong Wei, Zhe‐Fei Li
Software Mentions: 4
Published: about 5 years ago

10.1186/s12941-021-00428-9

The impact of urine microbiota in patients with lower urinary tract symptoms
Cited by: 15
Author(s): Hsiang Ying Lee, Jiunn‐Wei ‐W Wang, Yung Shun Juan, Ching Chia Li, Chung‐Jung Liu, Sung Yong Cho, Hsin Chih Yeh, Kuang Shun Chueh, Wen Jeng Wu, Deng‐Chyang Wu
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms22010275

The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function
Cited by: 8
Author(s): Yashwanth Subbannayya, Markus Haug, Sneha M. Pinto, Varshasnata Mohanty, Hany Zakaria Meås, Trude Helen Flo, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-021-03058-7

Reduced free asparagine in wheat grain resulting from a natural deletion of TaASN-B2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality
Cited by: 10
Author(s): Joseph Oddy, Rocío Alarcón‐Reverte, Mark Wilkinson, Karl Ravet, Sarah Raffan, Andrea Minter, Andrew Mead, J. Stephen Elmore, Isabel Moreira de Almeida, Nicholas C. Cryer, Nigel G. Halford, Stephen Pearce
Software Mentions: 4
Published: almost 5 years ago

10.1098/rspb.2020.2689

Noise distracts foraging bats
Cited by: 20
Author(s): Louise C. Allen, Nickolay I. Hristov, Juliette J. Rubin, Joseph T. Lightsey, Jesse R. Barber
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0009425

Profound downregulation of neural transcription factor Npas4 and Nr4a family in fetal mice neurons infected with Zika virus
Cited by: 3
Author(s): Sergio P. Alpuche-Lazcano, James Saliba, Vivian Vasconcelos Costa, Gabriel Henrique Campolina-Silva, Fernanda Martins Marim, Lucas S. Ribeiro, Volker Blank, Andrew J. Mouland, Mauro M. Teixeira, Anne Gatignol
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0008407

Linking longitudinal and cross-sectional biomarker data to understand host-pathogen dynamics: Leptospira in California sea lions (Zalophus californianus) as a case study
Cited by: 9
Author(s): Katherine C. Prager, Michael Buhnerkempe, Denise J. Greig, Anthony J. Orr, Eric D. Jensen, Forrest M. Gomez, Renee L. Galloway, Qingzhong Wu, Frances M. D. Gulland, James O. Lloyd‐Smith
Software Mentions: 4
Published: almost 6 years ago

10.1093/iob/obaa030

Metabolic Rates Predict Baseline Corticosterone and Reproductive Output in a Free-Living Passerine
Cited by: 5
Author(s): Blanca Jimeno, Mackenzie R. Prichard, Devin W Landry, Cole J. Wolf, Beau Larkin, Zachary A. Cheviron, Creagh W. Breuner
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0165267

Plasma Metabolites Predict Severity of Depression and Suicidal Ideation in Psychiatric Patients-A Multicenter Pilot Analysis
Cited by: 87
Author(s): Daiki Setoyama, Takahiro A. Kato, Ryota Hashimoto, Hiroshi Kunugi, Kotaro Hattori, Kohei Hayakawa, Mina Sato-Kasai, Norihiro Shimokawa, Sachie Kaneko, Sumiko Yoshida, Yu Ichi Goto, Yuka Yasuda, Hidenaga Yamamori, Masahiro Ohgidani, Noriyuki Sagata, Daisuke Miura, Dongchon Kang, Shigenobu Kanba
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-018-31545-9

Barcoding of Chrysomelidae of Euro-Mediterranean area: efficiency and problematic species
Cited by: 21
Author(s): Giulia Magoga, D. Coral Şahin, Diego Fontaneto, Matteo Montagna
Software Mentions: 4
Published: almost 8 years ago

10.3390/ijerph17072361

A Systematic Review and Meta-Analysis Investigating the Relationship between Exposures to Chemical and Non-Chemical Stressors during Prenatal Development and Childhood Externalizing Behaviors
Cited by: 6
Author(s): Frances M. Nilsen, Jessica J. Frank, Nicolle S. Tulve
Software Mentions: 4
Published: about 6 years ago

10.3390/ani11030865

Habitat Elevation Shapes Microbial Community Composition and Alter the Metabolic Functions in Wild Sable (Martes zibellina) Guts
Cited by: 7
Author(s): Lantian Su, Xinxin Liu, Guang-Yao Jin, Yue Ma, Haoxin Tan, Muhammed Abdul Khalid, Martin Romantschuk, Shan Yin, Nan Hui
Software Mentions: 4
Published: over 5 years ago

10.3390/cells9020387

Separated Siamese Twins: Intronic Small Nucleolar RNAs and Matched Host Genes May be Altered in Conjunction or Separately in Multiple Cancer Types
Cited by: 7
Author(s): Marianna Penzo, Rosanna Clima, Davide Treré, Lorenzo Montanaro
Software Mentions: 4
Published: over 6 years ago

10.1186/s12917-020-02430-3

Gut microbiota profiles of commercial laying hens infected with tumorigenic viruses
Cited by: 1
Author(s): Xianhua Wan, Laipeng Xu, Xiaolun Sun, Hui Li, Fengbin Yan, Ruili Han, Hong Li, Zhuanjian Li, Yadong Tian, Xiaojun Liu, Xin Kang, Zhenya Wang, Yanbin Wang
Software Mentions: 4
Published: almost 6 years ago

10.1038/srep29832

Identification of host transcriptional networks showing concentration-dependent regulation by HPV16 E6 and E7 proteins in basal cervical squamous epithelial cells
Cited by: 7
Author(s): Stephen Smith, Cinzia G. Scarpini, Ian J. Groves, Richard Odle, Nicholas Coleman
Software Mentions: 4
Published: almost 10 years ago

10.1093/iob/obab024

Increasing Viscosity Helps Explain Locomotor Control in Swimming Polypterus senegalus
Cited by: 7
Author(s): Keegan Lutek, Emily M. Standen
Software Mentions: 4
Published: over 5 years ago

10.3389/fneur.2021.576382

Potential Molecular Mechanism of TNF Superfamily-Related Genes in Glioblastoma Multiforme Based on Transcriptome and Epigenome
Cited by: 6
Author(s): Hui Xie, Ce Yuan, Jinjiang Li, Zhaoyang Li, Wei-Cheng Lu
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms7100441

Changes in the Bacterioplankton Community Structure from Southern Gulf of Mexico During a Simulated Crude Oil Spill at Mesocosm Scale
Cited by: 17
Author(s): Sonia S. Valencia-Agami, Daniel Cerqueda‐García, S. Putzeys, María Magdalena Uribe-Flores, Ulises García-Cruz, Daniel Pech, Jorge A. Herrera-Silveira, M. Leopoldina Aguirre-Macedo, José Q. García-Maldonado
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0220647

Hypoxia causes woodlice (Porcellio scaber) to select lower temperatures and impairs their thermal performance and heat tolerance
Cited by: 10
Author(s): Andrzej Antoł, Wiktoria Rojek, Sanjeev Singh, Damian Piekarski, Marcin Czarnołęski
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-42570-7

Stage-specific transcriptome of Bursaphelenchus xylophilus reveals temporal regulation of effector genes and roles of the dauer-like stages in the lifecycle
Cited by: 22
Author(s): Shino Tanaka, Mehmet Dayı, Y. Maeda, Isheng Jason Tsai, Ryusei Tanaka, Mark W. Bligh, Yuko Takeuchi-Kaneko, Kenji Fukuda, Natsumi Kanzaki, Taisei Kikuchi
Software Mentions: 4
Published: about 7 years ago

10.3390/ijms22157804

Skin Wound Healing Rate in Fish Depends on Species and Microbiota
Cited by: 9
Author(s): Tery Yun, Soeun Shin, Kyungwon Bang, Mugeun Lee, Jung-Ah Cho, Min Won Baek
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pntd.0002880

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota
Cited by: 274
Author(s): Soo Ching Lee, Mei Tang, Yvonne A. L. Lim, Seow Huey Choy, Zachary Kurtz, Laura M. Cox, Uma Mahesh Gundra, Ilseung Cho, Richard Bonneau, Martin J. Blaser, Kek Heng Chua, P’ng Loke
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0245243

Potential role of the skin and gut microbiota in premenarchal vulvar lichen sclerosus: A pilot case-control study
Cited by: 13
Author(s): Suhana Chattopadhyay, Justin D. Arnold, Leena Malayil, Lauren E. Hittle, Emmanuel F. Mongodin, Kalyani Marathe, Veronica Gómez-Lobo, Amy R. Sapkota
Software Mentions: 4
Published: over 5 years ago

10.1186/s13068-015-0248-5

Genome-wide analysis of the endoplasmic reticulum stress response during lignocellulase production in Neurospora crassa
Cited by: 52
Author(s): Fan Feng, Guoli Ma, Jingen Li, Qian Liu, J. Philipp Benz, Chaoguang Tian, Yanhe Ma
Software Mentions: 4
Published: about 11 years ago

10.3390/ijms22042006

Transcriptome Analysis Reveals HgCl2 Induces Apoptotic Cell Death in Human Lung Carcinoma H1299 Cells through Caspase-3-Independent Pathway
Cited by: 2
Author(s): Mi Jin Kim, Jin‐Hong Park, Jin-Ho Kim, Jiyoung Kim, Mi-Jin An, Geun-Seup Shin, Hyun-Min Lee, Chulhong Kim, Jung-Woong Kim
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00177-19

A Simple Microbiome in the European Common Cuttlefish, Sepia officinalis
Cited by: 12
Author(s): Holly L. Lutz, Shamayim T. Ramírez-Puebla, Lisa Abbo, Amber Durand, Cathleen Schlundt, Neil Gottel, Alexandra K. Sjaarda, Roger T. Hanlon, Jack A. Gilbert, Jessica L. Mark Welch
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.6413

Gut microbiomes of sympatric Amazonian wood‐eating catfishes (Loricariidae) reflect host identity and little role in wood digestion
Cited by: 12
Author(s): Mark McCauley, Donovan P. German, Nathan K. Lujan, Colin R. Jackson
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0176762

Indexical and linguistic processing by 12-month-olds: Discrimination of speaker, accent and vowel differences
Cited by: 12
Author(s): Karen E. Mulak, Cory D. Bonn, Kateřina Chládková, Richard Ν. Aslin, Paola Escudero
Software Mentions: 4
Published: about 9 years ago

10.3390/microorganisms8091347

Gut Microbial Changes in Diabetic db/db Mice and Recovery of Microbial Diversity upon Pirfenidone Treatment
Cited by: 17
Author(s): Harinder Singh, Sadaaki Miyamoto, Manjula Darshi, Manolito Torralba, Ki-Ryong Kwon, Kumar Sharma, Rembert Pieper
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms9050897

Gut Microbiome of Indonesian Adults Associated with Obesity and Type 2 Diabetes: A Cross-Sectional Study in an Asian City, Yogyakarta
Cited by: 16
Author(s): Phatthanaphong Therdtatha, Yanming Song, Masaru Tanaka, Mariyatun Mariyatun, Maisaroh Almunifah, Nancy Eka Putri Manurung, Siska Indriarsih, Yi Lu, Koji Nagata, Katsuya Fukami, Tetsuo Ikeda, Yuan Kun Lee, Endang Sutriswati Rahayu, Jiro Nakayama
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2020.00082

Pod Dehiscence in Hairy Vetch (Vicia villosa Roth)
Cited by: 16
Author(s): Lisa Kissing Kucek, Heathcliffe Riday, Bryce P. Rufener, Allen N. Burke, Sarah Seehaver Eagen, Nancy Ehlke, Sarah Krogman, Steven B. Mirsky, S. Chris Reberg‐Horton, Matthew R. Ryan, Sandra Wayman, Nick P. Wiering
Software Mentions: 4
Published: over 6 years ago

10.1186/s40635-020-00335-x

Alkaline phosphatase in pulmonary inflammation—a translational study in ventilated critically ill patients and rats
Cited by: 6
Author(s): Jenny Juschten, Sarah A. Ingelse, Lieuwe D. J. Bos, Armand R. J. Girbes, Nicole P. Juffermans, Tom van der Poll, Marcus J. Schultz, Pieter R. Tuinman
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms8010094

Characterization of the Gut Microbiota of Individuals at Different T2D Stages Reveals a Complex Relationship with the Host
Cited by: 40
Author(s): Alejandra Chávez-Carbajal, María Luisa Pizano-Zárate, Fernando Hernández-Quiroz, Guillermo Federico Ortíz-Luna, Rosa María Morales-Hernández, Amapola De Sales-Millán, María Hernández‐Trejo, Angelina García-Vite, Luis Beltrán-Lagunés, Carlos Hoyo‐Vadillo, Jaime García‐Mena
Software Mentions: 4
Published: over 6 years ago

10.3389/fnut.2021.640100

Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome
Cited by: 7
Author(s): Jason W. Arnold, Hunter D. Whittington, Sue F. Dagher, Jeffery Roach, M. Andrea Azcárate-Peril, José M. Bruno-Bárcena
Software Mentions: 4
Published: about 5 years ago

10.1016/j.ahj.2016.10.020

Inadequacy of existing clinical prediction models for predicting mortality after transcatheter aortic valve implantation
Cited by: 41
Author(s): Glen P. Martin, Matthew Sperrin, Peter Ludman, Mark de Belder, Chris P Gale, William D. Toff, Neil Moat, Uday Trivedi, Iain Buchan, Mamas A. Mamas
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2020.00993

The Core Gut Microbiome of Black Soldier Fly (Hermetia illucens) Larvae Raised on Low-Bioburden Diets
Cited by: 71
Author(s): Thomas Klammsteiner, Andreas Walter, Tajda Bogataj, Carina Desirée Heussler, Blaž Stres, Florian M. Steiner, Birgit C. Schlick‐Steiner, Wolfgang Arthofer, Heribert Insam
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-89366-2

Comparative transcriptomics between Drosophila mojavensis and D. arizonae reveals transgressive gene expression and underexpression of spermatogenesis-related genes in hybrid testes
Cited by: 9
Author(s): Cecília Ártico Banho, Vincent Mérel, Thiago Y. Oliveira, Claudia M. A. Carareto, Cristina Vieira
Software Mentions: 4
Published: about 5 years ago

10.1186/s13195-021-00892-7

Leukotriene receptor antagonist use and cognitive decline in normal cognition, mild cognitive impairment, and Alzheimer’s dementia
Cited by: 10
Author(s): Lisa Y. Xiong, Michael Ouk, Che‐Yuan Wu, Jennifer S. Rabin, Krista L. Lanctôt, Nathan Herrmann, Sandra E. Black, Jodi D. Edwards, Walter Swardfager
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-68136-6

Effects of substratum and depth on benthic harmful dinoflagellate assemblages
Cited by: 13
Author(s): Li Keat Lee, Zhen Fei Lim, Haifeng Gu, Leo Lai Chan, R. Wayne Litaker, Patricia A. Tester, Chui Pin Leaw, Po Teen Lim
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12935-021-01939-3

Identification of an immune-related signature indicating the dedifferentiation of thyroid cells
Cited by: 10
Author(s): Xuemin Wang, Wen Peng, Chunyan Li, Rujia Qin, Zhaoming Zhong, Chuanzheng Sun
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.00479

Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species
Cited by: 72
Author(s): Marko Verce, Luc De Vuyst, Stefan Weckx
Software Mentions: 4
Published: over 7 years ago

10.1111/irv.12574

Primary care influenza-like illness surveillance in Ho Chi Minh City, Vietnam 2013-2015
Cited by: 8
Author(s): Stacy Todd, Nguyễn Thị Cẩm Hường, Nguyen Thi Le Thanh, Nguyen Ha Thao Vy, Nguyễn Thành Hưng, Tran Thi Nhu Thao, Huynh Thi Phuong, H. Rogier van Doorn, Vu Thi Ty Hang, Nguyễn Văn Vĩnh Châu, Jonathan M. Read, David G. Lalloo, Maciej F. Boni
Software Mentions: 4
Published: almost 8 years ago

10.3390/ijerph17155451

A Meta-Analysis of Stressors from the Total Environment Associated with Children’s General Cognitive Ability
Cited by: 16
Author(s): Frances M. Nilsen, Jazmin Del Carmen Ruiz, Nicolle S. Tulve
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0182585

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients
Cited by: 55
Author(s): Eli L. Moss, Shannon B. Falconer, Е. И. Ткаченко, Mingjie Wang, Hannah Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth Hohmann, Ami S. Bhatt
Software Mentions: 4
Published: almost 9 years ago

10.18632/aging.103859

Weighted gene coexpression network analysis identifies the key role associated with acute coronary syndrome
Cited by: 4
Author(s): Yong Wang, Miao Liu, Tao Lin, Jianhong Chen, Chuan-Meng Zhu, Ye Li, Bin Qi, Fei Liao, Rongshan Li
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0193484

AHR2 required for normal behavioral responses and proper development of the skeletal and reproductive systems in zebrafish
Cited by: 39
Author(s): Gloria R. Garcia, Sean M. Bugel, Lisa Truong, Sean Spagnoli, Robert L. Tanguay
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-021-07559-5

Effect of genome composition and codon bias on infectious bronchitis virus evolution and adaptation to target tissues
Cited by: 8
Author(s): Giovanni Franzo, Claudia Maria Tucciarone, Matteo Legnardi, Mattia Cecchinato
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0209449

Lexical category acquisition is facilitated by uncertainty in distributional co-occurrences
Cited by: 5
Author(s): Giovanni Cassani, Robert Grimm, Walter Daelemans, Steven Gillis
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.01361

Biochar Amendment Stimulates Utilization of Plant-Derived Carbon by Soil Bacteria in an Intercropping System
Cited by: 33
Author(s): Hongkai Liao, Yaying Li, Huaiying Yao
Software Mentions: 4
Published: about 7 years ago

10.1128/mSphere.00227-21

Microbiome Analysis Reveals Diversity and Function of Mollicutes Associated with the Eastern Oyster, Crassostrea virginica
Cited by: 16
Author(s): Zachary T. Pimentel, Keith Dufault‐Thompson, Kayla T. Russo, Abigail K. Scro, Roxanna Smolowitz, Marta Gómez-Chiarri, Ying Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.6299

Interspecific comparison of the fecal microbiota structure in three Arctic migratory bird species
Cited by: 13
Author(s): Hyunjun Cho, Won Young Lee
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-32361-x

Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model
Cited by: 12
Author(s): Stefan Rupf, Cédric Christian Laczny, Valentina Galata, Christina Backes, Andreas Keller, Natalia Umanskaya, Arzu Erol, Sascha Tierling, Christina Lo Porto, Jörn Walter, Jasmin Kirsch, Matthias Hannig, Christian Hannig
Software Mentions: 4
Published: almost 8 years ago

10.3390/ijerph17197277

How the Lagged and Accumulated Effects of Stress, Coping, and Tasks Affect Mood and Fatigue during Nurses’ Shifts
Cited by: 4
Author(s): Fermín Martínez-Zaragoza, Jordi Fernández Castro, Gemma Benavides-Gil, Rosa García-Sierra
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00290-19

Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing Experiments
Cited by: 149
Author(s): Lisa Karstens, Mark Asquith, Sean Davin, Damien A. Fair, W. Thomas Gregory, Alan J. Wolfe, Jonathan Braun, Shannon K. McWeeney
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12879-020-05600-8

Describing nearly two decades of Chagas disease in Germany and the lessons learned: a retrospective study on screening, detection, diagnosis, and treatment of Trypanosoma cruzi infection from 2000 – 2018
Cited by: 10
Author(s): Jessica Michelle Guggenbühl Noller, Günter Fröschl, Philip Eisermann, Johannes Jochum, Stefanie Theuring, Ingrid Reiter‐Owona, Alfred Lennart Bissinger, Michael Höelscher, Abhishek Bakuli, Franz-Josef Falkner von Sonnenburg, Camilla Rothe, Gisela Bretzel, Pedro Albajar-Viñas, Lise Grout, Michael Pritsch
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9040751

Characterization and Performance of Lactate-Feeding Consortia for Reductive Dechlorination of Trichloroethene
Cited by: 10
Author(s): Jiangwei Li, Anyi Hu, Shaoping Bai, Xiaoyang Yang, Qian Sun, Xu Liao, Chang‐Ping Yu
Software Mentions: 4
Published: about 5 years ago

10.1128/mSphere.00009-21

Bacterial Quorum-Sensing Signal Arrests Phytoplankton Cell Division and Impacts Virus-Induced Mortality
Cited by: 16
Author(s): Scott Black Pollara, Jamie W. Becker, Brook L. Nunn, Rene Boiteau, Daniel J. Repeta, Miranda C. Mudge, Grayton Downing, Davis Chase, Elizabeth L. Harvey, Kristen E. Whalen
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41422-019-0251-7

Guiding T lymphopoiesis from pluripotent stem cells by defined transcription factors
Cited by: 39
Author(s): Rong Guo, Fang Hu, Qitong Weng, Chen Lv, Hongling Wu, Lijuan Liu, Zongcheng Li, Yang Zeng, Zhijie Bai, Mengyun Zhang, Yuting Liu, Xiaofei Liu, Chengxiang Xia, Tongjie Wang, Pingwei Zhou, Kaitao Wang, Yong Dong, Yuxuan Luo, Xiangzhong Zhang, Yuxian Guan, Geng Yang, Juan Du, Yangqiu Li, Yu Lan, Jiekai Chen, Bing Liu, Jinyong Wang
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.4842

Studying the microbiota of bats: Accuracy of direct and indirect samplings
Cited by: 9
Author(s): Muriel Dietrich, Wanda Markotter
Software Mentions: 4
Published: over 7 years ago

10.1186/s13195-018-0394-7

Alzheimer’s disease master regulators analysis: search for potential molecular targets and drug repositioning candidates
Cited by: 62
Author(s): Daiani Machado de Vargas, Marco Antônio De Bastiani, Eduardo R. Zimmer, Fábio Klamt
Software Mentions: 4
Published: about 8 years ago

10.3389/fmed.2021.737007

Severe SARS-CoV-2 Breakthrough Reinfection With Delta Variant After Recovery From Breakthrough Infection by Alpha Variant in a Fully Vaccinated Health Worker
Cited by: 64
Author(s): Jayanthi Shastri, Swapneil Parikh, Veena Aggarwal, Sachee Agrawal, Nirjhar Chatterjee, Rajit Shah, Priti Devi, Priyanka Mehta, Rajesh Pandey
Software Mentions: 4
Published: almost 5 years ago

10.3389/fneur.2020.00605

Subtle Cerebellar Features in Relatives of Essential Tremor Cases
Cited by: 1
Author(s): Evan A. Hale, Ruby Hickman, Hollie Dowd, Deepti Varathan, Gina Liu, Elan D. Louis
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.649312

Characterising Post-mortem Bacterial Translocation Under Clinical Conditions Using 16S rRNA Gene Sequencing in Two Animal Models
Cited by: 2
Author(s): Lily Gates, Nigel Klein, Neil J. Sebire, Dagmar Alber
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.7401

Transcriptome assembly and differential gene expression of the invasive avian malaria parasite Plasmodium relictum in Hawaiʻi
Cited by: 8
Author(s): Elin Videvall, Kristina L. Paxton, Michael G. Campana, Loren Cassin-Sackett, Carter T. Atkinson, Robert C. Fleischer
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22147250

Drugs and Epigenetic Molecular Functions. A Pharmacological Data Scientometric Analysis
Cited by: 5
Author(s): Dario Kringel, Sebastian Malkusch, Jörn Lötsch
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijms21239331

Genomic and Transcriptomic Survey Provides New Insight into the Organization and Transposition Activity of Highly Expressed LTR Retrotransposons of Sunflower (Helianthus annuus L.)
Cited by: 13
Author(s): Ilya Kirov, Murad Omarov, Pavel Merkulov, Maxim Dudnikov, Sofya Gvaramiya, Elizaveta Kolganova, Р. А. Комахин, Г. И. Карлов, A. A. Soloviev
Software Mentions: 4
Published: over 5 years ago

10.1186/s12865-014-0040-5

Quantitative assessment of the robustness of next-generation sequencing of antibody variable gene repertoires from immunized mice
Cited by: 53
Author(s): Victor Greiff, Ulrike Menzel, Ulrike Haessler, Skylar C. Cook, Simon Friedensohn, Tarik A. Khan, Mark Pogson, Ina Hellmann, Sai T. Reddy
Software Mentions: 4
Published: over 11 years ago

10.1186/s12865-020-00344-1

Identification of differentially expressed circulating exosomal lncRNAs in IgA nephropathy patients
Cited by: 17
Author(s): Na Guo, Qin Zhou, Xiang Huang, Jia-Kuo Yu, Qianqian Han, Baoting Nong, Yuanyan Xiong, Peifeng Liang, Jiajia Li, Min Feng, Jun Lv, Qiongqiong Yang
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00783-19

Space Is More Important than Season when Shaping Soil Microbial Communities at a Large Spatial Scale
Cited by: 61
Author(s): Kaoping Zhang, Manuel Delgado‐Baquerizo, Yong‐Guan Zhu, Haiyan Chu
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0179458

Concurrent development of facial identity and expression discrimination
Cited by: 6
Author(s): Kirsten A. Dalrymple, Matteo Visconti di Oleggio Castello, Jed T. Elison, M. Ida Gobbini
Software Mentions: 4
Published: about 9 years ago

10.1098/rspb.2019.1220

On the diverse and opposing effects of nutrition on pathogen virulence
Cited by: 35
Author(s): Victoria L. Pike, Katrina A. Lythgoe, Kayla C. King
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12864-020-07260-z

Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum
Cited by: 18
Author(s): Delong Wang, Xuke Lu, Xiugui Chen, Shuai Wang, Junjuan Wang, Lixue Guo, Zujun Yin, Quanjia Chen, Wuwei Ye
Software Mentions: 4
Published: over 5 years ago

10.3390/molecules26185543

Pyrethroid and Etofenprox Resistance in Anopheles gambiae and Anopheles coluzzii from Vegetable Farms in Yaoundé, Cameroon: Dynamics, Intensity and Molecular Basis
Cited by: 13
Author(s): Michael Piameu, Philippe Nwane, Wilson Toussile, Konstantinos Mavridis, Nadja Wipf, Lili Ranaise Mbakop, Stanislas Mandeng, Wolfgang Eyisap Ekoko, Jean-Claude Toto, Kelly Lionelle Ngaffo, Petronile Klorane Ngo Etounde, Arthur Titcho Ngantchou, Mouhamadou Chouaïbou, Pie Müller, Parfait Awono-Ambene, John Vontas, Josiane Etang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2020.549531

The Analysis of Field Strains Isolated From Food, Animal and Clinical Sources Uncovers Natural Mutations in Listeria monocytogenes Nisin Resistance Genes
Cited by: 8
Author(s): Joseph Wambui, Athmanya K. Eshwar, Mariella Aalto-Araneda, Anna K Pöntinen, Marc J. A. Stevens, Patrick Murigu Kamau Njage, Taurai Tasara
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0231083

Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla
Cited by: 4
Author(s): Yakshi Ortiz, Carla Restrepo, Brayan Vilanova-Cuevas, Eugenio Santiago‐Valentín, Susannah G. Tringe, Filipa Godoy-Vitorino
Software Mentions: 4
Published: about 6 years ago

10.3390/molecules25102353

Sexual Dimorphism in Energy Metabolism of Wistar Rats Using Data Analysis
Cited by: 12
Author(s): Andrea Leškaničová, Olga Chovancova, Marián Babinčák, Ľudmila Verbóová, Zuzana Benetinová, Denisa Maceková, Jozef Kostolny, B Smajda, Terézia Kisková
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2164-15-884

A comparison of gene transcription profiles of domesticated and wild Atlantic salmon (Salmo salar L.) at early life stages, reared under controlled conditions
Cited by: 46
Author(s): Beatrix Bicskei, James E. Bron, Kevin A. Glover, John B. Taggart
Software Mentions: 4
Published: over 12 years ago

10.3389/fpls.2012.00202

A High-Throughput Method for Illumina RNA-Seq Library Preparation
Cited by: 134
Author(s): Ravi Kumar, Yasunori Ichihashi, Seisuke Kimura, Daniel H. Chitwood, Lauren R. Headland, Jie Peng, Julin N. Maloof, Neelima Sinha
Software Mentions: 4
Published: over 14 years ago

10.3390/molecules24193629

Level of Biogenic Amines in Red and White Wines, Dietary Exposure, and Histamine-Mediated Symptoms upon Wine Ingestion
Cited by: 27
Author(s): Francesco Esposito, Paolo Montuori, M. Schettino, Salvatore Velotto, Tommaso Stasi, Raffaele Romano, Teresa Cirillo
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.203323

An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
Cited by: 10
Author(s): Bing Qi, Han Liu, Qi Zhou, Ji Li, Xueying Shi, Yu‐Shan Wei, Yinmin Gu, Akio Mizushima, Shilin Xia
Software Mentions: 4
Published: almost 5 years ago

10.1128/mBio.01229-21

Diverse Humoral Immune Responses in Younger and Older Adult COVID-19 Patients
Cited by: 18
Author(s): Jennifer Sasson, Joseph J. Campo, Rebecca Carpenter, Mary K. Young, Arlo Randall, Krista Trappl-Kimmons, Amit Oberai, Christopher Hung, Joshua Edgar, Andy Teng, Jozelyn Pablo, Xiaowu Liang, Angela Yee, William A. Petri, David Camerini
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpls.2018.00322

Genetic and Developmental Basis for Increased Leaf Thickness in the Arabidopsis Cvi Ecotype
Cited by: 21
Author(s): Viktoriya Coneva, Daniel H. Chitwood
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0242008

Measuring adverse events following hip arthroplasty surgery using administrative data without relying on ICD-codes
Cited by: 5
Author(s): Martin Magnéli, Maria Unbeck, Cecilia Rogmark, Olof Sköldenberg, Max Gordon
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0225842

Impact of oral probiotic Lactobacillus acidophilus vaccine strains on the immune response and gut microbiome of mice
Cited by: 14
Author(s): Zaid Abdo, Jonathan LeCureux, Alora LaVoy, Bridget Eklund, Elizabeth P. Ryan, Gregg A. Dean
Software Mentions: 4
Published: over 6 years ago

10.1038/s41422-020-00465-7

The m6A methylome of SARS-CoV-2 in host cells
Cited by: 87
Author(s): June Liu, Yixin Xu, Kai Li, Qing Ye, Hang Zhou, Hai Sun, Xiaoyu Li, Yu Liu, Yong Qiang Deng, Rui Ting Li, Miao Cheng, Bo He, Jia Zhou, Xiao Feng Li, Aiping Wu, Chengqi Yi, Qi Cheng
Software Mentions: 4
Published: over 5 years ago

10.3390/molecules24213942

A Chemometric Analysis of Deep-Sea Natural Products
Cited by: 16
Author(s): Lisa I. Pilkington
Software Mentions: 4
Published: over 6 years ago

10.3390/molecules25020359

Correlations Between Trace Elements in Selected Locations of the Human Brain in Individuals with Alcohol Use Disorder
Cited by: 7
Author(s): Cezary Grochowski, Magdalena Szukała, Jakub Litak, Agnieszka Budny, Jędrzej Proch, Dariusz Majerek, Eliza Blicharska, Przemysław Niedzielski
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0233067

No evidence for a relationship between breed cooperativeness and inequity aversion in dogs
Cited by: 5
Author(s): Jim McGetrick, Désirée Brucks, Sarah Marshall-Pescini, Friederike Range
Software Mentions: 4
Published: about 6 years ago

Projects: cran: ggplot2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning ggplot2 11,441