cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s13613-019-0600-1

Prediction of mortality in adult patients with sepsis using six biomarkers: a systematic review and meta-analysis
Cited by: 38
Author(s): Andreas Pregernig, Mattia Müller, Ulrike Held, Beatrice Beck‐Schimmer
Software Mentions: 5
Published: over 6 years ago

10.1093/aobpla/plx010

Antibiotics impact plant traits, even at small concentrations
Cited by: 69
Author(s): Vanessa Minden, Andrea Deloy, Anna Martina Volkert, Sara D. Leonhardt, Gesine Pufal
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2016.02079

Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea
Cited by: 49
Author(s): Timo Kohn, Anja Heuer, Mareike Jogler, John Vollmers, Christian Boedeker, Boyke Bunk, Patrick Rast, Daniela Borchert, Ines Glöckner, Heike M. Freese, Hans‐Peter Klenk, Jörg Overmann, Anne‐Kristin Kaster, Manfred Rohde, Sandra Wiegand, Christian Jogler
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0167375

Mangrove Crab Ucides cordatus Removal Does Not Affect Sediment Parameters and Stipule Production in a One Year Experiment in Northern Brazil
Cited by: 12
Author(s): Nathalie Pülmanns, Ulf Mehlig, Inga Nordhaus, Ulrich Saint-Paul, Karen Diele
Software Mentions: 5
Published: over 9 years ago

10.18632/aging.202739

Oral administration of Akkermansia muciniphila elevates systemic antiaging and anticancer metabolites
Cited by: 67
Author(s): Claudia Grajeda‐Iglesias, Sylvère Durand, Romain Daillère, Kristina Iribarren, Fabien Lemaître, Lisa Derosa, Fanny Aprahamian, Noélie Bossut, Nitharsshini Nirmalathasan, Frank Madeo, Laurence Zitvogel, Guido Kroemer
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.02798

The Compositionally Distinct Cyanobacterial Biocrusts From Brazilian Savanna and Their Environmental Drivers of Community Diversity
Cited by: 22
Author(s): Nathali Machado de Lima, Vanessa Moreira Câmara Fernandes, Daniel Roush, Sergio Velasco Ayuso, Janaína Rigonato, Ferrán García-Pichel, Luis Henrique Zanini Branco
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2021.562199

Pixel-Based Machine Learning and Image Reconstitution for Dot-ELISA Pathogen Diagnosis in Biological Samples
Cited by: 1
Author(s): Cleo Anastassopoulou, Athanasios Tsakris, George P. Patrinos, Yiannis Manoussopoulos
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.09347

A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy
Cited by: 332
Author(s): Matthias C. Munder, Daniel Midtvedt, Titus M. Franzmann, Elisabeth Nüske, Oliver Otto, Maik Herbig, Elke Ulbricht, Paul Müller, Anna Taubenberger, Shovamayee Maharana, Liliana Malinovska, Doris Richter, Jochen Guck, Vasily Zaburdaev, Simon Alberti
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0198452

Large-scale patterns of benthic marine communities in the Brazilian Province
Cited by: 76
Author(s): Anaide W. Aued, Franz Smith, Juan P. Quimbayo, Davi V. Cândido, Guilherme O. Longo, Carlos E. L. Ferreira, Jon D. Witman, Sergio R. Floeter, Bárbara Segal
Software Mentions: 5
Published: about 8 years ago

10.1038/s41418-021-00784-1

Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment
Cited by: 58
Author(s): Safae Terrisse, Lisa Derosa, Valerio Iebba, François Ghiringhelli, Inês Vaz-Luís, Guido Kroemer, Marine Fidelle, Stergios Christodoulidis, Nicola Segata, Andrew Maltez Thomas, Anne‐Laure Martin, Aude Sirven, Sibille Everhard, Fanny Aprahamian, Nitharsshini Nirmalathasan, Romy Aarnoutse, Marjolein L. Smidt, Janine Ziemons, Carlos Caldas, Sibylle Loibl, Carsten Denkert, Sylvère Durand, Claudia Iglesias, Filippo Pietrantonio, Bertrand Routy, Fabrice André, Edoardo Pasolli, Suzette Delaloge, Laurence Zitvogel
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2020.572504

Microbiomic Analysis on Low Abundant Respiratory Biomass Samples; Improved Recovery of Microbial DNA From Bronchoalveolar Lavage Fluid
Cited by: 13
Author(s): Montserrat Saladié, José A. Caparrós-Martín, Ana Patrícia, Peter Wark, Stephen M. Stick, Fergal O’Gara
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.56029

Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traits
Cited by: 14
Author(s): Melissa L. Spear, Alex Diaz-Papkovich, Elad Ziv, Joseph Yracheta, Simon Gravel, Dara G. Torgerson, Ryan D. Hernández
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.680622

Gut Microbiota Signature Among Asian Post-gestational Diabetes Women Linked to Macronutrient Intakes and Metabolic Phenotypes
Cited by: 12
Author(s): Zubaidah Hasain, Raja Affendi Raja Ali, Shairah Abdul Razak, Kamalrul Azlan Azizan, Emad El‐Omar, Nurul Huda Razalli, Norfilza Mohd Mokhtar
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2021.647977

Probiotic Yeasts and Vibrio anguillarum Infection Modify the Microbiome of Zebrafish Larvae
Cited by: 12
Author(s): Orlando Vargas, María Soledad Gutiérrez, Mario Caruffo, Benjamín Valderrama, Daniel A. Medina, Katherine García, Angélica Reyes-Jara, Mauricio Toro, Carmen G. Feijóo, Paola Navarrete
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0206791

Palaeohistology and life history evolution in cave bears, Ursus spelaeus sensu lato
Cited by: 9
Author(s): Kristof Veitschegger, Christian Kolb, Eli Amson, Torsten M. Scheyer, Marcelo R. Sánchez‐Villagra
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0227028

Spatial ecology of coyotes in the urbanizing landscape of the Cuyahoga Valley, Ohio
Cited by: 4
Author(s): Gregory A. Franckowiak, Marlo Perdicas, Gregory A. Smith
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0175330

Genomic analyses of the ancestral Manila family of Mycobacterium tuberculosis
Cited by: 8
Author(s): Xuehua Wan, Kent J. Koster, Lishi Qian, Edward Desmond, Richard Brostrom, Shaobin Hou, James T. Douglas
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0255241

Detecting joint attention events in mother-infant dyads: Sharing looks cannot be reliably identified by naïve third-party observers
Cited by: 2
Author(s): Kirsty E. Graham, Joanna C. Buryn-Weitzel, Nicole J Lahiff, Claudia Wilke, Katie E. Slocombe
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0229183

Divorce and adolescent academic achievement: Heterogeneity in the associations by parental education
Cited by: 9
Author(s): Sondre Aasen Nilsen, Kyrre Breivik, Bente Wold, Kristin Gärtner Askeland, Børge Sivertsen, Mari Hysing, Tormod Bøe
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.47605

Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells
Cited by: 79
Author(s): Eugene Park, Sanket Patel, Qiuling Wang, Prabhakar S. Andhey, Konstantin Zaitsev, Sophia Porter, Maxwell Hershey, Michael D. Bern, Béatrice Plougastel-Douglas, Patrick L. Collins, Marco Colonna, Kenneth M. Murphy, Eugene M. Oltz, Maxim N. Artyomov, L. David Sibley, Wayne M. Yokoyama
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2020.00266

Identification of Anti-Mycobacterium and Anti-Legionella Compounds With Potential Distinctive Structural Scaffolds From an HD-PBL Using Phenotypic Screens in Amoebae Host Models
Cited by: 7
Author(s): Nabil Hanna, Sébastien Kicka, Gianpaolo Chiriano, Christopher F. Harrison, Hajer Ouertatani Sakouhi, Valentin Trofimov, Agata Kranjc, Jahn Nitschke, Marco Pagni, Pierre Cosson, Hubert Hilbi, Léonardo Scapozza, Thierry Soldati
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.00925

Disentangling Large- and Small-Scale Abiotic and Biotic Factors Shaping Soil Microbial Communities in an Alpine Cushion Plant System
Cited by: 19
Author(s): Chenyue Wang, Richard Michalet, Ziyang Liu, Xingpei Jiang, Xiangtai Wang, Gaosen Zhang, Lu An, Shuyan Chen, Sa Xiao
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2017.00214

Gut Microbial Diversity Assessment of Indian Type-2-Diabetics Reveals Alterations in Eubacteria, Archaea, and Eukaryotes
Cited by: 73
Author(s): Shrikant Bhute, Mangesh V. Suryavanshi, Santosh B. Joshi, Chittaranjan S. Yajnik, Yogesh S. Shouche, Surendra Ghaskadbi
Software Mentions: 5
Published: over 9 years ago

10.7554/eLife.63642

Microbial genetic and transcriptional contributions to oxalate degradation by the gut microbiota in health and disease
Cited by: 23
Author(s): Menghan Liu, Joseph C. Devlin, Jiyuan Hu, Angelina Volkova, Thomas Battaglia, Melody Ho, John R. Asplin, Allyson L. Byrd, P’ng Loke, Huilin Li, Kelly V. Ruggles, Aristotelis Tsirigos, Martin J. Blaser, Lama Nazzal
Software Mentions: 5
Published: over 5 years ago

10.1186/s12967-020-02635-y

Exploration of predictive and prognostic alternative splicing signatures in lung adenocarcinoma using machine learning methods
Cited by: 8
Author(s): Qidong Cai, Boxue He, Pengfei Zhang, Zhenyu Zhao, Ping Xiong, Yuqian Zhang, Hui Xie, Xiang Wang
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2020.01187

Determination of Plasmid pSN1216-29 Host Range and the Similarity in Oligonucleotide Composition Between Plasmid and Host Chromosomes
Cited by: 3
Author(s): Maho Tokuda, Haruo Suzuki, Kosuke Yanagiya, Masahiro Yuki, Kengo Inoue, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani
Software Mentions: 5
Published: about 6 years ago

10.3390/cancers11121951

Novel and Rare Fusion Transcripts Involving Transcription Factors and Tumor Suppressor Genes in Acute Myeloid Leukemia
Cited by: 17
Author(s): Antonella Padella, Giorgia Simonetti, Giulia Paciello, George Giotopoulos, Carmen Baldazzi, Simona Righi, Martina Ghetti, Anna Stengel, Viviana Guadagnuolo, Rossella De Tommaso, Cristina Papayannidis, Valentina Robustelli, Eugenia Franchini, Andrea Ghelli Luserna di Rorà, Anna Ferrari, Maria Chiara Fontana, Samantha Bruno, Emanuela Ottaviani, Simona Soverini, Clelia Tiziana Storlazzi, Claudia Haferlach, Elena Sabattini, Nicoletta Testoni, Ilaria Iacobucci, Brian J.P. Huntly, Elisa Ficarra, Giovanni Martinelli
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.00098

Bdellovibrio and Like Organisms in Lake Geneva: An Unseen Elephant in the Room?
Cited by: 18
Author(s): Jade Ezzedine, Louis Jacas, Yves Desdevises, Stéphan Jacquet
Software Mentions: 5
Published: over 6 years ago

10.1016/j.cell.2020.04.035

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Cited by: 1,817
Author(s): Carly G.K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, Ian Mbano, Vincent N. Miao, Constantine N. Tzouanas, Yuming Cao, Ashraf S. Yousif, Julia Bals, Blake M. Hauser, Jared Feldman, Christoph Muus, Marc H. Wadsworth, Samuel W. Kazer, Travis Hughes, Benjamin Doran, G. James Gatter, Marko Vukovic, Faith Taliaferro, Benjamin E. Mead, Zhiru Guo, Jennifer Wang, Delphine Gras, Magali Plaisant, Meshal Ansari, Ilias Angelidis, Heiko Adler, Jennifer M.S. Sucre, Chase J. Taylor, Brian M. Lin, Avinash Waghray, Vanessa Mitsialis, Daniel F. Dwyer, Kathleen M. Buchheit, Joshua A. Boyce, Nora A. Barrett, Tanya M. Laidlaw, Shaina L. Carroll, Lucrezia Colonna, Victor Tkachev, Christopher W. Peterson, Alison Yu, Hengqi Zheng, Hannah P. Gideon, Caylin G. Winchell, Philana Ling Lin, Colin D. Bingle, Scott B. Snapper, Jonathan A. Kropski, Fabian J. Theis, Herbert B. Schiller, Laure‐Emmanuelle Zaragosi, Pascal Barbry, Alasdair Leslie, Hans–Peter Kiem, JoAnne L. Flynn, Sarah M. Fortune, Bonnie Berger, Robert W. Finberg, Leslie S. Kean, Manuel Garber, Aaron Schmidt, Daniel Lingwood, Alex K. Shalek, José Ordovás-Montañés, Nicholas E. Banovich, Alvis Brāzma, Tushar J. Desai, Thao Duong, Oliver Eickelberg, Christine S. Falk, Michael Farzan, Ian A. Glass, Muzlifah Haniffa, Péter Horváth, Deborah T. Hung, Naftali Kaminski, Mark A. Krasnow, Malte Kühnemund, Robert Lafyatis, Haeock Lee, Sylvie Leroy, Sten Linnarson, Joakim Lundeberg, Kerstin B. Meyer, Alexander V. Misharin, Martijn C. Nawijn, M Nikolíc, Dana Pe’er, Joseph E. Powell, Stephen R. Quake, Jay Rajagopal, Purushothama Rao Tata, Emma L. Rawlins, Aviv Regev, Paul A. Reyfman, Mauricio Rojas, Orit Rosen, Kourosh Saeb‐Parsy, Christos Samakovlis, Herbert B. Schiller, Joachim L. Schultze, Max A. Seibold, Douglas P. Shepherd, Jason R. Spence, Avrum Spira, Xin Sun, Sarah A. Teichmann, Fabian J. Theis, Alexander M. Tsankov, Maarten van den Berge, Michael von Papen, Jeffrey A. Whitsett, Ramnik J. Xavier, Yan Xu, Kun Zhang
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0255411

Citizen science reveals unexpected solute patterns in semiarid river networks
Cited by: 3
Author(s): Erin Jones, Rebecca J. Frei, Raymond M. Lee, Jordan D. Maxwell, Rhetta Shoemaker, Andrew Follett, Gabriella M. Lawson, Madeleine Malmfeldt, Rachel Watts, Zachary T. Aanderud, Carter Allred, Allison Tuttle Asay, Madeline Buhman, Hunter C Burbidge, Amber Call, Trevor Crandall, Isabella M. Errigo, Natasha A. Griffin, Neil C. Hansen, Jansen C. Howe, Emily L. Meadows, Elizabeth Kujanpää, Leslie A. Lange, Monterey L. Nelson, Adam J. Norris, Elysse Ostlund, Nicholas J. Suiter, Kaylee Brook Tanner, Joseph Tolworthy, Maria Camila Vargas, Benjamin W. Abbott
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-021-81332-2

Low serum total CO2 and its association with mortality in patients being followed up in the nephrology outpatients clinic
Cited by: 0
Author(s): Kyung Don Yoo, Jung Nam An, Yong Chul Kim, Jeonghwan Lee, Kwon Wook Joo, Yun Kyu Oh, Yon Su Kim, Chun Soo Lim, Sohee Oh, Jung Pyo Lee
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-019-5974-9

Comparison of gene expression profile of the spinal cord of sprouting-capable neonatal and sprouting-incapable adult mice
Cited by: 9
Author(s): Hiroshi Tsujioka, Toshio Yamashita
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-021-80990-6

Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage
Cited by: 24
Author(s): Josephine E. S. Strange, Pimlapas Leekitcharoenphon, Frederik Duus Møller, Frank Møller Aarestrup
Software Mentions: 5
Published: over 5 years ago

10.18632/aging.103497

Plasma sex hormone-binding globulin predicts neurodegeneration and clinical progression in prodromal Alzheimer's disease
Cited by: 9
Author(s): Wei Xu, Bing-Jie Su, Xue–Ning Shen, Yan‐Lin Bi, Cheng Tan, Jieqiong Li, Xi‐Peng Cao, Qiang Dong, Lan Tan, Alzheimer’s Disease Neuroimaging Initiative, Jin‐Tai Yu
Software Mentions: 5
Published: almost 6 years ago

10.1186/1471-2164-14-853

Reprogramming of lysosomal gene expression by interleukin-4 and Stat6
Cited by: 18
Author(s): Louise M Brignull, Zsolt Czimmerer, Hafida Saidi, Bence Dániel, Izabel Vianna Villela, Nathan W. Bartlett, Sebastian L. Johnston, Lisiane B. Meira, László Nagy, Axel Nohturfft
Software Mentions: 5
Published: over 12 years ago

10.3390/cancers12102959

De Novo A-to-I RNA Editing Discovery in lncRNA
Cited by: 15
Author(s): Domenico Alessandro Silvestris, Chiara Scopa, Sara Hanchi, Franco Locatelli, Angela Gallo
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-80829-6

Empirical evidence for concerted evolution in the 18S rDNA region of the planktonic diatom genus Chaetoceros
Cited by: 5
Author(s): Danièle De Luca, Wiebe H. C. F. Kooistra, Diana Sarno, Elio Biffali, Roberta Piredda
Software Mentions: 5
Published: over 5 years ago

10.18632/aging.203081

Pan-cancer analysis of the prognostic value of C12orf75 based on data mining
Cited by: 3
Author(s): Guangzhen Cai, Guan-Nan Jin, Jintai Liang, Ganxun Li, Xiaoping Chen, Huifang Liang, Zhao Ding
Software Mentions: 5
Published: about 5 years ago

10.3390/jpm10040271

Identification of Metabolic Biomarkers in Relation to Methotrexate Response in Early Rheumatoid Arthritis
Cited by: 13
Author(s): Helen R. Gosselt, Ittai B. Muller, Gerrit Jansen, Michel van Weeghel, Frédéric M. Vaz, Johanna M. W. Hazes, Sandra G. Heil, Robert de Jonge
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-81538-4

Clinical implications of intrinsic molecular subtypes of breast cancer for sentinel node status
Cited by: 12
Author(s): Maria Rossing, Christina Bligaard Pedersen, Tove Filtenborg Tvedskov, Ilse Vejborg, Maj Lis Møller Talman, Lars Rønn Olsen, Niels Kroman, Finn Cilius Nielsen, Maj Britt Jensen, Bent Ejlertsen
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-015-2096-x

The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh
Cited by: 19
Author(s): James Boocock, David Chagné, Tony R. Merriman, Michael A. Black
Software Mentions: 5
Published: over 10 years ago

10.1186/s12864-019-5892-x

Carriage of Shiga toxin phage profoundly affects Escherichia coli gene expression and carbon source utilization
Cited by: 25
Author(s): Petya Berger, Ivan U. Kouzel, Michael Berger, Nadja Haarmann, Ulrich Dobrindt, Gerald B. Koudelka, Alexander Mellmann
Software Mentions: 5
Published: about 7 years ago

10.1038/s41366-020-0639-y

Less sedentary time is associated with a more favourable glucose-insulin axis in obese pregnant women—a secondary analysis of the DALI study
Cited by: 12
Author(s): Anna M. Dieberger, Gernot Desoyé, Erwin Stolz, David J. Hill, Rosa Corcoy, David Simmons, Jürgen Harreiter, Alexandra Kautzky‐Willer, Fidelma Dunne, Roland Devlieger, Ewa Wender-Ożegowska, Agnieszka Zawiejska, Annunziata Lapolla, Maria Grazia Dalfrà, Alessandra Bertolotto, Sander Galjaard, Juan M. Adelantado, Dorte Møller Jensen, Lise Lotte Torvin Andersen, Mette Tanvig, Peter Damm, Elisabeth Reinhardt Mathiesen, Frank J. Snoek, Judith G. M. Jelsma, Mireille N.M. van Poppel
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12864-020-07114-8

Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences
Cited by: 12
Author(s): Zhe Zhang, Lei Liu, Melis Kücükoglu, Dongdong Tian, Robert M. Larkin, Xueping Shi, Bo Zheng
Software Mentions: 5
Published: over 5 years ago

10.1186/s12913-018-2952-x

Reducing time-to-unit among patients referred to an outpatient stroke assessment unit with a novel triage process: a prospective cohort study
Cited by: 2
Author(s): Maximilian B. Bibok, Kristine Votova, Robert Balshaw, Mary Lesperance, Nicole Croteau, Anurag Trivedi, Jaclyn Morrison, Colin Sedgwick, Andrew M. Penn
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-020-80151-1

Dispersal and competitive release affect the management of native and invasive tephritid fruit flies in large and smallholder farms in Ethiopia
Cited by: 3
Author(s): Tibebe Dejene Biasazin, Tadiwos W. Wondimu, Sebastian Larsson Herrera, Mattias C. Larsson, Agenor Mafra‐Neto, Yitbarek W. Gessese, Teun Dekker
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-77289-3

Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes
Cited by: 4
Author(s): Meghan H. Shilts, Christian Rosas‐Salazar, Christian Edward Cyril Lynch, Andrey Tovchigrechko, Helen H. Boone, Patty Russell, Alexandra Connolly, Kaitlin Costello, Megan D McCollum, Annie Mai, Derek Wiggins, Seesandra V. Rajagopala, Shibu Yooseph, R. Stokes Peebles, Tina V. Hartert, Suman Das
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2016.00606

Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria
Cited by: 28
Author(s): Vincent J. Denef, Masanori Fujimoto, Michelle A. Berry, Marian L. Schmidt
Software Mentions: 5
Published: about 10 years ago

10.1186/s12879-021-06528-3

A systematic review of the sensitivity and specificity of lateral flow devices in the detection of SARS-CoV-2
Cited by: 58
Author(s): Dylan A. Mistry, Jenny Wang, Mika-Erik Moeser, Thomas Starkey, Lee L
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12879-016-1702-0

The role of hand hygiene in controlling norovirus spread in nursing homes
Cited by: 21
Author(s): Rania Assab, Laura Temime
Software Mentions: 5
Published: almost 10 years ago

10.1186/s12864-019-6314-9

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause
Cited by: 32
Author(s): Thomas J. Colgan, Sive Finlay, Mark J. F. Brown, James C. Carolan
Software Mentions: 5
Published: over 6 years ago

10.1136/bmj.l440

Duration of antibiotic treatment for common infections in English primary care: cross sectional analysis and comparison with guidelines
Cited by: 73
Author(s): Koen B Pouwels, Susan Hopkins, Martin J. Llewelyn, A Sarah Walker, Cliodna McNulty, Julie V. Robotham
Software Mentions: 5
Published: over 7 years ago

10.1186/s12864-020-07027-6

Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome
Cited by: 21
Author(s): Yiqian Li, Wenyan Nong, Tobias Baril, Ho Yin Yip, Thomas Swale, Alexander Hayward, David Ferrier, Jerome H. L. Hui
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-019-6240-x

Didelphis albiventris: an overview of unprecedented transcriptome sequencing of the white-eared opossum
Cited by: 0
Author(s): Íria Gabriela Dias dos Santos, Tiago Antônio de Oliveira Mendes, Gerluza Aparecida Borges Silva, Amanda Maria Sena Reis, Cláudia Barros Monteiro-Vitorello, Patrícia Dayane Carvalho Schaker, Roberto Hirochi Herai, André Brait Carneiro Fabotti, Luiz Lehmann Coutinho, Érika Cristina Jorge
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-95960-1

Modelling menstrual cycle length in athletes using state-space models
Cited by: 9
Author(s): Thiago de Paula Oliveira, Georgie Bruinvels, Charles R. Pedlar, Brian Moore, John Newell
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-76769-w

GIANT: galaxy-based tool for interactive analysis of transcriptomic data
Cited by: 8
Author(s): Jimmy Vandel, Céline Gheeraert, Bart Staels, Jérôme Eeckhoute, Philippe Lefèbvre, Julie Dubois-Chevalier
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-76978-3

Bio-fertilizer and rotten straw amendments alter the rhizosphere bacterial community and increase oat productivity in a saline–alkaline environment
Cited by: 20
Author(s): Peina Lu, Luke D. Bainard, Bin Ma, Jinghui Liu
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-96633-9

Spatio-seasonal variation of water quality influenced by land use and land cover in Lake Muhazi
Cited by: 15
Author(s): Edovia Dufatanye Umwali, Alishir Kurban, Alain Isabwe, Richard Mind’je, Hossein Azadi, Zengkun Guo, Madeleine Udahogora, Anathalie Nyirarwasa, Jeanine Umuhoza, Vincent Nzabarinda, Aboubakar Gasirabo, Gulnur Sabirhazi
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2019.01768

Shear Stress as a Major Driver of Marine Biofilm Communities in the NW Mediterranean Sea
Cited by: 30
Author(s): Elisa Caldeira Pires Catão, Thomas V. Pollet, Benjamin Misson, Cédric Garnier, Jean-François Ghiglione, Raphaëlle Barry‐Martinet, Marine Maintenay, Christine Bressy, Jean‐François Briand
Software Mentions: 5
Published: almost 7 years ago

10.1136/bmjopen-2019-031251

Residential area deprivation and risk of subsequent hospital admission in a British population: the EPIC-Norfolk cohort
Cited by: 7
Author(s): Robert Luben, Shabina Hayat, Anthony P. Khawaja, Nicholas J. Wareham, Paul Pharoah, Kay‐Tee Khaw
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-017-3543-7

The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes
Cited by: 56
Author(s): Jon Bohlin, Vegard Eldholm, John H.‐O. Pettersson, Ola Brønstad Brynildsrud, Lars-Gustav Snipen
Software Mentions: 5
Published: over 9 years ago

10.1186/s12864-018-4541-0

Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigma
Cited by: 8
Author(s): Shannon J. O’Leary, Christopher M. Hollenbeck, Robert R. Vega, John R. Gold, David S. Portnoy
Software Mentions: 5
Published: over 8 years ago

10.18632/aging.102841

Identification of biomarkers related to CD8+ T cell infiltration with gene co-expression network in clear cell renal cell carcinoma
Cited by: 47
Author(s): Jiaxing Lin, Meng Yu, Xiao Xu, Yutao Wang, Haotian Xing, Jing An, Jieping Yang, Chaozhi Tang, Dan Sun, Yuyan Zhu
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-92838-0

Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta
Cited by: 4
Author(s): Gust Bilcke, Lore Van Craenenbroeck, Alexandre Castagna, Cristina Maria Osuna-Cruz, Klaas Vandepoele, Koen Sabbe, Lieven De Veylder, Wim Vyverman
Software Mentions: 5
Published: almost 5 years ago

10.18632/oncotarget.27614

miR-708-5p targets oncogenic prostaglandin E2 production to suppress a pro-tumorigenic phenotype in lung cancer cells
Cited by: 13
Author(s): Nicholas J. Monteleone, Carol S. Lutz
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-021-97519-6

Landscape genetics and the genetic legacy of Upper Paleolithic and Mesolithic hunter-gatherers in the modern Caucasus
Cited by: 1
Author(s): Alexander Gavashelishvili, Alexey Yanchukov, David Tarkhnishvili, Marine Murtskhvaladze, Irakli Akhvlediani, Ceren Kazancı
Software Mentions: 5
Published: almost 5 years ago

10.18632/aging.202801

The construction and analysis of a ferroptosis-related gene prognostic signature for pancreatic cancer
Cited by: 26
Author(s): Pei-Cheng Jiang, Feng Yang, Caifeng Zou, Tianyuan Bao, Mengmeng Wu, Dongqin Yang, Shurui Bu
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-74602-y

A trophic latitudinal gradient revealed in anchovy and sardine from the Western Mediterranean Sea using a multi-proxy approach
Cited by: 21
Author(s): Eneko Bachiller, Marta Albo-Puigserver, Joan Giménez, María Grazia Pennino, Neus Marí‐Mena, Antonio Esteban, Elena Lloret-Lloret, Angélique Jadaud, Belén Carro, José María Bellido, Marta Coll
Software Mentions: 5
Published: over 5 years ago

10.1186/s12862-021-01856-z

Positive selection on the MHC class II DLA-DQA1 gene in golden jackals (Canis aureus) from their recent expansion range in Europe and its effect on their body mass index
Cited by: 6
Author(s): Milomir Stefanović, Duško Ćirović, Neda Bogdanović, Felix Knauer, Miklós Heltai, László Szabó, József Lanszki, Chavdar Zhelev, Helmut Schaschl, Franz Suchentrunk
Software Mentions: 5
Published: about 5 years ago

10.3390/cancers13102300

Plasma Protein Biomarkers Associated with Higher Ovarian Cancer Risk in BRCA1/2 Carriers
Cited by: 5
Author(s): Hee-Sung Ahn, Jung Ho, Jeesuk Yu, Jeonghun Yeom, Sanha Lee, Soo-Young Hur, Yoon Young Jung, Kyunggon Kim, Youn Jin Choi
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-48166-5

Enrichment of intracellular sulphur cycle –associated bacteria in intertidal benthic foraminifera revealed by 16S and aprA gene analysis
Cited by: 12
Author(s): I. Salonen, Panagiota-Myrsini Chronopoulou, Clare Bird, Gert‐Jan Reichart, Karoliina A. Koho
Software Mentions: 4
Published: almost 7 years ago

10.3390/cancers12092466

Expression Profiling of Extracellular Matrix Genes Reveals Global and Entity-Specific Characteristics in Adenoid Cystic, Mucoepidermoid and Salivary Duct Carcinomas
Cited by: 16
Author(s): Christoph Arolt, Moritz Meyer, Franziska Hoffmann, Svenja Wagener‐Ryczek, David Schwarz, Lisa Nachtsheim, Dirk Beutner, Margarete Odenthal, Orlando Guntinas‐Lichius, Reinhard Buettner, Ferdinand von Eggeling, Jens Peter Klußmann, Alexander Quaas
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.6378

Density dependent attributes of fish aggregative behaviour
Cited by: 11
Author(s): Michaela Holubová, Martin Čech, Mojmír Vašek, Jiří Peterka
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2020.00629

Genomics of Heat Tolerance in Reproductive Performance Investigated in Four Independent Maternal Lines of Pigs
Cited by: 16
Author(s): Francesco Tiezzi, Luiz F. Brito, Jeremy Howard, Yongjun Huang, Kent Gray, Charles V. Schwab, Justin Fix, Christian Maltecca
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13040-017-0155-3

Ten quick tips for machine learning in computational biology
Cited by: 552
Author(s): Davide Chicco
Software Mentions: 4
Published: over 8 years ago

10.1155/2020/3641231

Immune-Related Four-lncRNA Signature for Patients with Cervical Cancer
Cited by: 19
Author(s): Jianfeng Zheng, Benben Cao, Xia Zhang, Zhenbin Niu, Jinyi Tong
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.9326

Microbial community analysis in the gills of abalones suggested possible dominance of epsilonproteobacterium in Haliotis gigantea
Cited by: 2
Author(s): Yukino Mizutani, Tetsushi Mori, Taeko Miyazaki, Satoshi Fukuzaki, Reiji Tanaka
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13040-018-0171-y

Connecting genetics and gene expression data for target prioritisation and drug repositioning
Cited by: 20
Author(s): Enrico Ferrero, Pankaj Agarwal
Software Mentions: 4
Published: about 8 years ago

10.1186/1471-2105-15-91

Differential meta-analysis of RNA-seq data from multiple studies
Cited by: 88
Author(s): Andrea Rau, Guillemette Marot, Florence Jaffrézic
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0251121

Melanocytes determine angiogenesis gene expression across human tissues
Cited by: 3
Author(s): Shirly Freilikhman, Marianna Halasi, Alal Eran, Irit Adini
Software Mentions: 4
Published: about 5 years ago

10.3389/fvets.2020.00251

Rumen Microbiota Distribution Analyzed by High-Throughput Sequencing After Oral Doxycycline Administration in Beef Cattle
Cited by: 5
Author(s): Fengmei Chen, Guangcun Cheng, Yan Xu, Yunzhou Wang, Qingxiang Xia, Shiqiang Hu
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.6946

Genomic analysis of Asian honeybee populations in China reveals evolutionary relationships and adaptation to abiotic stress
Cited by: 6
Author(s): Peng Shi, Jun Zhou, Huali Song, Yujuan Wu, Lan Lan, Xiangyou Tang, Zhengang Ma, Charles R. Vossbrinck, Bettina Vossbrinck, Zeyang Zhou, Jianlong Xu
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.8486

Patterns of biodiversity response along a gradient of forest use in Eastern Amazonia, Brazil
Cited by: 7
Author(s): Sérgio Milheiras, Marcelino Carneiro Guedes, Fernando A. B. Silva, Perseu Silva Aparicio, Georgina M. Mace
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.38014

Decoupling the impact of microRNAs on translational repression versus RNA degradation in embryonic stem cells
Cited by: 52
Author(s): Jacob W. Freimer, TJ Hu, Robert Blelloch
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-021-99104-3

Microbiome signature and diversity regulates the level of energy production under anaerobic condition
Cited by: 16
Author(s): M. Shaminur Rahman, M. Nazmul Hoque, J. Akter Puspo, M. Rafiul Islam, Niloy Das, Mohammad Anwar Siddique, Md. Anwar Hossain, Munawar Sultana
Software Mentions: 4
Published: over 4 years ago

10.7554/eLife.63333

Estrogen receptor alpha in the brain mediates tamoxifen-induced changes in physiology in mice
Cited by: 15
Author(s): Zhang Zhi, Jae Whan Park, In Sook Ahn, Graciel Diamante, Nilla Sivakumar, Douglas Arneson, Xia Yang, J. Edward Van Veen, Stephanie M. Correa
Software Mentions: 4
Published: over 5 years ago

10.3390/jcm10020325

Aorto-Iliac Artery Calcification and Graft Outcomes in Kidney Transplant Recipients
Cited by: 6
Author(s): Stan Benjamens, Saleh Z Alghamdi, Elsaline Rijkse, Charlotte A Te Velde-Keyzer, Stefan P. Berger, Cyril Moers, Martin H. de Borst, Riemer H. J. A. Slart, Frank J. M. F. Dor, Robert C. Minnee, Robert A. Pol
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10799

The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies
Cited by: 23
Author(s): Daniel Marquina, Mateusz Buczek, Fredrik Ronquist, Piotr Łukasik
Software Mentions: 4
Published: over 5 years ago

10.1038/s41366-018-0149-3

Maternal pre-pregnancy obesity and health care utilization and costs in the offspring
Cited by: 14
Author(s): Stefan Kuhle, Adam Muir, Christy Woolcott, Mary Brown, Sarah D. McDonald, Mohamed Abdolell, Linda Dodds
Software Mentions: 4
Published: almost 8 years ago

10.3390/microorganisms9081564

An Update on Trichoderma Mitogenomes: Complete De Novo Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma harzianum (Hypocreales, Sordariomycetes), an Ex-Neotype Strain CBS 226.95, and Tracing the Evolutionary Divergences of Mitogenomes in Trichoderma
Cited by: 6
Author(s): Yunyoung Kwak
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-021-97654-0

Assessment of the effectiveness of the EUROFORGEN NAME and Precision ID Ancestry panel markers for ancestry investigations
Cited by: 8
Author(s): Ditte Truelsen, Torben Tvedebrink, Helle Smidt Mogensen, Maryam Sharafi Farzad, Muhammad Adnan Shan, Niels Morling, Vânia Pereira, Claus Børsting
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.4406

Interactions between two parasites of brown trout (<i>Salmo trutta</i> ): Consequences of preinfection
Cited by: 7
Author(s): Mikhail Gopko, Mridula Chowdhury, Jouni Taskinen
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2020.598743

A Pan-Cancer Study of Epidermal Growth Factor-Like Domains 6/7/8 as Therapeutic Targets in Cancer
Cited by: 3
Author(s): Shanping Shi, Ting Ma, Yang Xi
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9091842

The Rhizobial Microbiome from the Tropical Savannah Zones in Northern Côte d’Ivoire
Cited by: 5
Author(s): Sara Laetitia Elphège Gnangui, Romain Kouakou Fossou, Anicet Ebou, Chiguié Estelle Raïssa Amon, Dominique Koua, Claude Ghislaine Kouadjo, Don A. Cowan, Adolphe Zézé
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-74753-y

Alcohol use in severely injured trauma patients
Cited by: 20
Author(s): Antti Riuttanen, Saara Jäntti, Ville M. Mattila
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.658927

Implications of Climate Change: How Does Increased Water Temperature Influence Biofilm and Water Quality of Chlorinated Drinking Water Distribution Systems?
Cited by: 14
Author(s): Carolina Calero Preciado, Joby Boxall, Víctor Soria‐Carrasco, Santiago Martínez, Isabel Douterelo
Software Mentions: 4
Published: about 5 years ago

10.3390/ani11041081

Flow Cytometric Assessment of the Viability and Functionality of Uterine Polymorphonuclear Leukocytes in Postpartum Dairy Cows
Cited by: 3
Author(s): Leen Lietaer, Kristel Demeyere, Stijn Heirbaut, Evelyne Meyer, G. Opsomer, Osvaldo Bogado Pascottini
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9020438

Phylogenetic Characterization of Crimean-Congo Hemorrhagic Fever Virus Detected in African Blue Ticks Feeding on Cattle in a Ugandan Abattoir
Cited by: 10
Author(s): Eddie M. Wampande, Peter Waiswa, David J. Allen, Roger Hewson, Simon D. W. Frost, Sam Stubbs
Software Mentions: 4
Published: over 5 years ago

10.1089/phage.2020.0046

Isolation and Characterization of <i>Klebsiella</i> Phages for Phage Therapy
Cited by: 32
Author(s): Eleanor Townsend, L. Kelly, Lucy Gannon, George Muscatt, Rhys A. Dunstan, Slawomir Michniewski, Hari Sapkota, Saija Kiljunen, Anna Kolsi, Mikael Skurnik, Trevor Lithgow, Andrew Millard, Eleanor Jameson
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.00581

The Potato Yam Phyllosphere Ectosymbiont Paraburkholderia sp. Msb3 Is a Potent Growth Promotor in Tomato
Cited by: 16
Author(s): Johannes B Herpell, Florian Schindler, Mersad Bejtović, Lena Fragner, Bocar Diallo, Anke Bellaire, Susanne Kublik, Bärbel U. Foesel, Silvia Gschwendtner, Melina Kerou, Michael Schloter, Wolfram Weckwerth
Software Mentions: 4
Published: about 6 years ago

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