cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s12284-020-00424-1

Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima
Cited by: 12
Author(s): Philippe Cubry, Hélène Pidon, Kim Nhung Ta, Christine Tranchant‐Dubreuil, Anne-Céline Thuillet, Maria Holzinger, Hélène Adam, Honoré Kam, Harold Chrestin, Alain Ghesquière, F. Ochsenbein, François Sabot, Yves Vigouroux, Laurence Albar, Stéfan Jouannic
Software Mentions: 5
Published: almost 6 years ago

10.1016/j.schres.2020.04.017

Modeling perception and behavior in individuals at clinical high risk for psychosis: Support for the predictive processing framework
Cited by: 17
Author(s): Eren Kafadar, Vijay A. Mittal, Gregory P. Strauss, Hannah C. Chapman, Lauren M. Ellman, Sonia Bansal, James M. Gold, Ben Alderson-Day, Samuel Evans, Jamie Moffatt, Steven M. Silverstein, Elaine F. Walker, Scott W. Woods, Philip R. Corlett, Albert R. Powers
Software Mentions: 5
Published: over 5 years ago

10.1126/sciadv.abe2592

Aquaculture mediates global transmission of a viral pathogen to wild salmon
Cited by: 24
Author(s): Gideon Mordecai, Kristina M. Miller, Arthur L. Bass, Andrew Bateman, Amy K. Teffer, Jessica M. Caleta, Emiliano Di Cicco, Angela D. Schulze, Karia H. Kaukinen, Shaorong Li, Amy Tabata, Bradley R. Jones, Tobi J. Ming, Jeffrey B. Joy
Software Mentions: 5
Published: over 5 years ago

10.1038/s41597-020-0352-7

Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
Cited by: 69
Author(s): Won-Hee Kang, Young Mi Sim, Namjin Koo, Jae Do Nam, Junesung Lee, Nayoung Kim, Hakgi Jang, Yongmin Kim, Seon-In Yeom
Software Mentions: 5
Published: over 6 years ago

10.1038/s41597-021-00896-w

Generation of a mouse SWATH-MS spectral library to quantify 10148 proteins involved in cell reprogramming
Cited by: 4
Author(s): Uxue Ulanga, Matthew R. Russell, Stefano Patassini, Julie Brazzatti, Ciaren Graham, Anthony D. Whetton, R.L. Graham
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-017-10576-8

Plant litter dynamics in the forest-stream interface: precipitation is a major control across tropical biomes
Cited by: 91
Author(s): Alan M. Tonin, José F. Gonçalves, Paulino Bambi, Sheyla Regina Marques Couceiro, Lorrane A. M. Feitoza, Lucas Eugênio Fontana, Neusa Hamada, Luiz Ubiratan Hepp, Vânia G. Lezan-Kowalczuk, Gustavo Figueiredo Marques Leite, Aurea Luiza Lemes-Silva, Leonardo Kleba Lisboa, Rafael Chaves Loureiro, Renato Tavares Martins, Adriana O. Medeiros, Paula B. Morais, Yara Moretto, Patrícia C. A. Oliveria, Evelyn B. Pereira, Lidiane P. Ferreira, Javier Jiménez Pérez, Maurício Mello Petrucio, Deusiano Florêncio dos Reis, Renan de Souza Rezende, Nádia Roque, Luiz E. P. Santos, Ana Emília Siegloch, Gabriela Tonello, Luz Boyero
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-017-13359-3

Long-term passive acoustic recordings track the changing distribution of North Atlantic right whales (Eubalaena glacialis) from 2004 to 2014
Cited by: 111
Author(s): G. E. Davis, Mark F. Baumgartner, Julianne Bonnell, Joel T. Bell, Catherine L. Berchok, Jacqueline Bort Thornton, Solange Brault, Gary Buchanan, Russell A. Charif, Danielle Cholewiak, Christopher W. Clark, Peter J. Corkeron, Julien Delarue, Kathleen M. Dudzinski, Leila T. Hatch, John A. Hildebrand, Lynne Hodge, Holger Klinck, Scott D. Kraus, Bruce Martin, David K. Mellinger, Hilary Moors‐Murphy, Sharon L. Nieukirk, Douglas P. Nowacek, Susan E. Parks, Andrew J. Read, Aaron N. Rice, Denise Risch, Ana Širović, Melissa S. Soldevilla, Kate Stafford, Joy E. Stanistreet, Erin Summers, Sean Todd, Ann Warde, Sofie M. Van Parijs
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-017-15629-6

Innate Cell-Mediated Cytotoxic Activity of European Sea Bass Leucocytes Against Nodavirus-Infected Cells: A Functional and RNA-seq Study
Cited by: 30
Author(s): Elena Chaves-Pozo, Yulema Valero, Anna Esteve‐Codina, Jèssica Gómez-Garrido, Marc Dabad, Tyler Alioto, José Meseguer, M. Ángeles Esteban, Alberto Cuesta
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-017-16739-x

Scene grammar shapes the way we interact with objects, strengthens memories, and speeds search
Cited by: 59
Author(s): Dejan Draschkow, Melissa L.-H. Võ
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-017-17408-9

Model-based genome-wide determination of RNA chain elongation rates in Escherichia coli
Cited by: 7
Author(s): Peter Großmann, Anja Lück, Christoph Kaleta
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-19717-z

Annual shifts of flow regime alteration: new insights from the Chaishitan Reservoir in China
Cited by: 12
Author(s): Yongyong Zhang, Xiaoyan Zhai, Tongtiegang Zhao
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-20607-7

Early Detection of Apathetic Phenotypes in Huntington’s Disease Knock-in Mice Using Open Source Tools
Cited by: 6
Author(s): Shawn Minnig, Robert M. Bragg, Hardeep S. Tiwana, Wes T. Solem, William S. Hovander, Eva-Mari S. Vik, Madeline Hamilton, Samuel R. W. Legg, Dominic D. Shuttleworth, Sydney R. Coffey, Jeffrey P. Cantle, Jeffrey B. Carroll
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-20823-1

Homogenization and impoverishment of taxonomic and functional diversity of ants in Eucalyptus plantations
Cited by: 65
Author(s): Felipe Martello, Francesco de Bello, Maria Santina de Castro Morini, Rogério Rosa da Silva, Débora Rodriges de Souza-Campana, Milton Cézar Ribeiro, Carlos P. Carmona
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-19939-1

Acute effects of air pollution on respiratory disease mortalities and outpatients in Southeastern China
Cited by: 46
Author(s): Zhe Mo, Qiang Fu, Lifang Zhang, Danni Lyu, Guangming Mao, Lizhi Wu, Pingwei Xu, Zhifang Wang, Xuejiao Pan, Zhijian Chen, Xiaofeng Wang, Xiaoming Lou
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-22125-y

Gut microbial composition in patients with psoriasis
Cited by: 130
Author(s): Francisco M. Codoñer, A. Ramírez-Boscá, Eric Climent, Miguel A Carrión-Gutiérrez, Mariano Guerrero, Jose Manuel Pérez-Orquín, José Horga de la Parte, Salvador Genovés, Daniel Ramón, Vicente Navarro-López, Empar Chenoll
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-22734-7

Transcriptional landscape of human endogenous retroviruses (HERVs) and other repetitive elements in psoriatic skin
Cited by: 11
Author(s): Freddy Lättekivi, Sulev Kõks, Maris Keermann, Ene Reimann, Ele Prans, Kristi Abram, Helgi Silm, Gea Kõks, Külli Kingo
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-25021-7

Quantitative comparison of different iron forms in the temporal cortex of Alzheimer patients and control subjects
Cited by: 39
Author(s): Marjolein Bulk, Louise van der Weerd, Wico Breimer, Н. А. Лебедев, Andrew Webb, Jelle J. Goeman, Roberta J. Ward, Martina Huber, Tjerk H. Oosterkamp, Lucia Bossoni
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-25760-7

Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks
Cited by: 36
Author(s): Shumei Wang, Li Chen, Maozhang He, Junda Shen, Guoqin Li, Tao Zhang, Ru‐Rong Wu, Lizhi Liu
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-29267-z

Intrinsic Rhythmicity Predicts Synchronization-Continuation Entrainment Performance
Cited by: 26
Author(s): Trevor McPherson, Dorita S. Berger, Sankaraleengam Alagapan, Flavio Fröhlich
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-019-56472-1

Sensitive detection of EBV microRNAs across cancer spectrum reveals association with decreased survival in adult acute myelocytic leukemia
Cited by: 8
Author(s): Mercedeh Movassagh, Cliff I. Oduor, Catherine S. Forconi, Ann M. Moormann, Jeffrey A. Bailey
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-57108-0

Transcriptional analysis identifies potential biomarkers and molecular regulators in pneumonia and COPD exacerbation
Cited by: 15
Author(s): Wilhelm Bertrams, Kathrin Griss, Maria Han, Kerstin Seidel, Andreas Klemmer, Alexandra Sittka-Stark, Stefan Hippenstiel, Norbert Suttorp, Florian Finkernagel, Jochen Wilhelm, Timm Greulich, Claus Vogelmeier, Julio Vera, Bernd Schmeck
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-57168-2

Competing Risk Analyses of Medullary Carcinoma of Breast in Comparison to Infiltrating Ductal Carcinoma
Cited by: 10
Author(s): Dongjun Dai, Rongkai Shi, Zhuo Wang, Yiwei Zhong, Vivian Y. Shin, Hongchuan Jin, Xian Wang
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-60564-8

16S rRNA gene sequencing reveals an altered composition of the gut microbiota in chickens infected with a nephropathogenic infectious bronchitis virus
Cited by: 10
Author(s): Puzhi Xu, Yan Shi, Ping Liu, Yulin Yang, Changming Zhou, Guyue Li, Junrong Luo, Caiying Zhang, Cao H, Guoliang Hu, Xiaomin Guo
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-61216-7

A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm
Cited by: 72
Author(s): Simone Scalabrin, Lucile Toniutti, Gabriele Di Gaspero, Davide Scaglione, Gabriele Magris, Michele Vidotto, Sara Pinosio, Frederica Cattonaro, Federica Magni, Irena Jurman, Mario Cerutti, F. S. Liverani, Luciano Navarini, Lorenzo Del Terra, Gloria Pellegrino, Manuela Rosanna Ruosi, Nicola Vitulo, Giorgio Valle, Alberto Pallavicini, G. Graziosi, Patricia E. Klein, Nolan Bentley, Seth C. Murray, William Solano, Amin Al Hakimi, Timothy Schilling, Christophe Montagnon, Michèle Morgante, Benoît Bertrand
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-63274-3

Epidemiological and aetiological characteristics of hand, foot, and mouth disease in Sichuan Province, China, 2011–2017
Cited by: 15
Author(s): Di Peng, Yue Ma, Yaqiong Liu, Qiang Lv, Fei Yin
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-64393-7

Development but not diet alters microbial communities in the Neotropical arboreal trap jaw ant Daceton armigerum: an exploratory study
Cited by: 13
Author(s): Manuela de Oliveira Ramalho, Christophe Duplais, Jérôme Orivel, Alain Déjean, Joshua C. Gibson, Andrew V. Suarez, Corrie S. Moreau
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-74602-y

A trophic latitudinal gradient revealed in anchovy and sardine from the Western Mediterranean Sea using a multi-proxy approach
Cited by: 21
Author(s): Eneko Bachiller, Marta Albo-Puigserver, Joan Giménez, María Grazia Pennino, Neus Marí‐Mena, Antonio Esteban, Elena Lloret-Lloret, Angélique Jadaud, Belén Carro, José María Bellido, Marta Coll
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-76978-3

Bio-fertilizer and rotten straw amendments alter the rhizosphere bacterial community and increase oat productivity in a saline–alkaline environment
Cited by: 20
Author(s): Peina Lu, Luke D. Bainard, Bin Ma, Jinghui Liu
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-76769-w

GIANT: galaxy-based tool for interactive analysis of transcriptomic data
Cited by: 8
Author(s): Jimmy Vandel, Céline Gheeraert, Bart Staels, Jérôme Eeckhoute, Philippe Lefèbvre, Julie Dubois-Chevalier
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-77289-3

Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes
Cited by: 4
Author(s): Meghan H. Shilts, Christian Rosas‐Salazar, Christian Edward Cyril Lynch, Andrey Tovchigrechko, Helen H. Boone, Patty Russell, Alexandra Connolly, Kaitlin Costello, Megan D McCollum, Annie Mai, Derek Wiggins, Seesandra V. Rajagopala, Shibu Yooseph, R. Stokes Peebles, Tina V. Hartert, Suman Das
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-80829-6

Empirical evidence for concerted evolution in the 18S rDNA region of the planktonic diatom genus Chaetoceros
Cited by: 5
Author(s): Danièle De Luca, Wiebe H. C. F. Kooistra, Diana Sarno, Elio Biffali, Roberta Piredda
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-80990-6

Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage
Cited by: 24
Author(s): Josephine E. S. Strange, Pimlapas Leekitcharoenphon, Frederik Duus Møller, Frank Møller Aarestrup
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-81332-2

Low serum total CO2 and its association with mortality in patients being followed up in the nephrology outpatients clinic
Cited by: 0
Author(s): Kyung Don Yoo, Jung Nam An, Yong Chul Kim, Jeonghwan Lee, Kwon Wook Joo, Yun Kyu Oh, Yon Su Kim, Chun Soo Lim, Sohee Oh, Jung Pyo Lee
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-81538-4

Clinical implications of intrinsic molecular subtypes of breast cancer for sentinel node status
Cited by: 12
Author(s): Maria Rossing, Christina Bligaard Pedersen, Tove Filtenborg Tvedskov, Ilse Vejborg, Maj Lis Møller Talman, Lars Rønn Olsen, Niels Kroman, Finn Cilius Nielsen, Maj Britt Jensen, Bent Ejlertsen
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-80151-1

Dispersal and competitive release affect the management of native and invasive tephritid fruit flies in large and smallholder farms in Ethiopia
Cited by: 3
Author(s): Tibebe Dejene Biasazin, Tadiwos W. Wondimu, Sebastian Larsson Herrera, Mattias C. Larsson, Agenor Mafra‐Neto, Yitbarek W. Gessese, Teun Dekker
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-95960-1

Modelling menstrual cycle length in athletes using state-space models
Cited by: 9
Author(s): Thiago de Paula Oliveira, Georgie Bruinvels, Charles R. Pedlar, Brian Moore, John Newell
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-96633-9

Spatio-seasonal variation of water quality influenced by land use and land cover in Lake Muhazi
Cited by: 15
Author(s): Edovia Dufatanye Umwali, Alishir Kurban, Alain Isabwe, Richard Mind’je, Hossein Azadi, Zengkun Guo, Madeleine Udahogora, Anathalie Nyirarwasa, Jeanine Umuhoza, Vincent Nzabarinda, Aboubakar Gasirabo, Gulnur Sabirhazi
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-021-92838-0

Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta
Cited by: 4
Author(s): Gust Bilcke, Lore Van Craenenbroeck, Alexandre Castagna, Cristina Maria Osuna-Cruz, Klaas Vandepoele, Koen Sabbe, Lieven De Veylder, Wim Vyverman
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-021-97519-6

Landscape genetics and the genetic legacy of Upper Paleolithic and Mesolithic hunter-gatherers in the modern Caucasus
Cited by: 1
Author(s): Alexander Gavashelishvili, Alexey Yanchukov, David Tarkhnishvili, Marine Murtskhvaladze, Irakli Akhvlediani, Ceren Kazancı
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-021-98343-8

Low serum vitamin D concentrations in Spring-born dairy calves are associated with elevated peripheral leukocytes
Cited by: 7
Author(s): Susana Flores‐Villalva, Megan B. O’Brien, Cian Reid, Seán Lacey, Stephen V. Gordon, Corwin D. Nelson, Kieran G. Meade
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41392-020-00221-8

An individualized immune signature of pretreatment biopsies predicts pathological complete response to neoadjuvant chemoradiotherapy and outcomes in patients with esophageal squamous cell carcinoma
Cited by: 17
Author(s): Chaoqi Zhang, Guochao Zhang, Nan Sun, Zhen Zhang, Liyan Xue, Zhihui Zhang, Haijun Yang, Yuejun Luo, Xiaoli Zheng, Yonglei Zhang, Yufen Yuan, Ruixue Lei, Zhaoyang Yang, Bo Zheng, Le Wang, Yun Cao, Feng Wang, Sihui Wang, Shugeng Gao, Qi Xue, Yi Zhang, Jie He
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13287-021-02508-1

Transcriptome-wide m6A methylome during osteogenic differentiation of human adipose-derived stem cells
Cited by: 4
Author(s): Weihao Sun, Yidan Song, Kai Xia, Liyuan Yu, Xinqi Huang, Zhihe Zhao, Jun Liu
Software Mentions: 5
Published: almost 5 years ago

10.1007/s00066-019-01522-w

Tumor regression during radiotherapy for non-small cell lung cancer patients using cone-beam computed tomography images
Cited by: 5
Author(s): Janita E. van Timmeren, Wouter van Elmpt, Dirk De Ruysscher, Bart Reymen, Olfred Hansen, Carsten Brink
Software Mentions: 5
Published: almost 7 years ago

10.3390/ijms20205043

Genome-Wide Identification, Gene Structure and Expression Analysis of the MADS-Box Gene Family Indicate Their Function in the Development of Tobacco (Nicotiana tabacum L.)
Cited by: 18
Author(s): Ge Bai, Da-Hai Yang, Peijian Cao, Huaiying Yao, Yihan Zhang, Xuejun Chen, Bingguang Xiao, Feng Li, Zhenyu Wang, Jun Yang, He Xie
Software Mentions: 5
Published: almost 7 years ago

10.3390/ijms21010145

Gene Copy Number and Post-Transductional Mechanisms Regulate TRAP1 Expression in Human Colorectal Carcinomas
Cited by: 3
Author(s): Michele Pietrafesa, Francesca Maddalena, Luciana Possidente, Valentina Condelli, Pietro Zoppoli, Valeria Li Bergolis, Maria Grazia Rodriquenz, Michele Aieta, Giulia Vita, Franca Esposito, Matteo Landriscina
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms21020468

Maternal Obesity Alters Placental Cell Cycle Regulators in the First Trimester of Human Pregnancy: New Insights for BRCA1
Cited by: 9
Author(s): Denise Hoch, Martina Bachbauer, Caroline Pöchlauer, Francisco Algaba-Chueca, Veronika Tandl, Boris Novakovic, Ana Megía, Martin Gauster, Richard Saffery, Andreas Glasner, Gernot Desoyé, Alejandro Majali-Martínez
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms21093229

A PIANO (Proper, Insufficient, Aberrant, and NO Reprogramming) Response to the Yamanaka Factors in the Initial Stages of Human iPSC Reprogramming
Cited by: 6
Author(s): Kejin Hu
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms21113770

Transcriptional Activity and Stability of CD39+CD103+CD8+ T Cells in Human High-Grade Endometrial Cancer
Cited by: 13
Author(s): Hagma H. Workel, Nienke van Rooij, Annechien Plat, Diana C.J. Spierings, Rudolf S.N. Fehrmann, Hans W. Nijman, Marco de Bruyn
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms21124302

Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene
Cited by: 11
Author(s): Debojyoti Das, Aniruddha Das, Mousumi Sahu, Smruti Sambhav Mishra, Shaheerah Khan, Pruthvi Raj Bejugam, Pranita K Rout, Arundhoti Das, Shehnaz Bano, Gyan P. Mishra, Sunil K. Raghav, Anshuman Dixit, Amaresh C. Panda
Software Mentions: 5
Published: about 6 years ago

10.3390/ijms21176033

Identification of Novel Targets of Knee Osteoarthritis Shared by Cartilage and Synovial Tissue
Cited by: 8
Author(s): Chenshuang Li, Zhong Zheng
Software Mentions: 5
Published: about 6 years ago

10.3390/ijms21176382

Antimicrobial and Amyloidogenic Activity of Peptides Synthesized on the Basis of the Ribosomal S1 Protein from Thermus Thermophilus
Cited by: 17
Author(s): Stanislav R. Kurpe, Sergei Y. Grishin, Alexey K. Surin, Olga M. Selivanova, Р. С. Фадеев, Ulyana F. Dzhus, E. Yu. Gorbunova, Leila G. Mustaeva, Vyacheslav N. Azev, Oxana V. Galzitskaya
Software Mentions: 5
Published: almost 6 years ago

10.3390/ijms22020678

JAZF1, A Novel p400/TIP60/NuA4 Complex Member, Regulates H2A.Z Acetylation at Regulatory Regions
Cited by: 15
Author(s): Tara Procida, Tobias Friedrich, Antonia Jack, Martina Peritore, Clemens Bönisch, H. Christian Eberl, Nadine Daus, Konstantin Kletenkov, Andrea Nist, Thorsten Stiewe, Tilman Borggrefe, Matthias Mann, Marek Bartkuhn, Sandra B. Hake
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms22020569

Cartilage Targets of Knee Osteoarthritis Shared by Both Genders
Cited by: 8
Author(s): Chenshuang Li, Zhong Zheng
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms22041989

Transcriptome Analysis of Subcutaneous Adipose Tissue from Severely Obese Patients Highlights Deregulation Profiles in Coding and Non-Coding Oncogenes
Cited by: 5
Author(s): Federica Rey, Letizia Messa, Cecilia Pandini, Rossella Launi, Bianca Barzaghini, Giancarlo Micheletto, Manuela Teresa Raimondi, Simona Bertoli, Cristina Cereda, Gian Vincenzo Zuccotti, Raffaella Cancello, Stephana Carelli
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms22073436

Genotyping by Sequencing Reveals Genetic Relatedness of Southwestern U.S. Blue Maize Landraces
Cited by: 4
Author(s): Amol N. Nankar, Richard C. Pratt
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms22189930

Comparative Evaluation of Sucrosomial Iron and Iron Oxide Nanoparticles as Oral Supplements in Iron Deficiency Anemia in Piglets
Cited by: 7
Author(s): Rafał Mazgaj, Paweł Lipiński, Mateusz Szudzik, Aneta Jończy, Z Kopeć, Adrian Stankiewicz, M. Kamyczek, Dorine W. Swinkels, Beata Żelazowska, Rafał R. Starzyński
Software Mentions: 5
Published: almost 5 years ago

10.3390/ijms221910297

Circular RNAs Repertoire and Expression Profile during Brassica rapa Pollen Development
Cited by: 10
Author(s): Saeid Babaei, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 5
Published: almost 5 years ago

10.2196/27633

Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
Cited by: 716
Author(s): András Lánczky, Balázs Győrffy
Software Mentions: 5
Published: about 5 years ago

10.2196/26494

Patient Monitoring Alarms of an Intensive Care Unit: Observational Study with DIY Instructions (Preprint)
Cited by: 13
Author(s): Akira-Sebastian Poncette, Maximilian Markus Wunderlich, Claudia Spies, Patrick Heeren, Gerald Vorderwülbecke, Eduardo Salgado, Marc Kastrup, Markus A. Feufel, Felix Balzer
Software Mentions: 5
Published: over 5 years ago

10.2196/28892

Mental Health and Behavior of College Students During the COVID-19 Pandemic: Longitudinal Mobile Smartphone and Ecological Momentary Assessment Study, Part II
Cited by: 25
Author(s): Dante L Mack, Alex W DaSilva, Courtney Rogers, Elin Hedlund, Eilis I Murphy, Vlado Vojdanovski, Jane Plomp, Weichen Wang, Subigya Nepal, Paul E. Holtzheimer, Dylan D. Wagner, Nicholas C. Jacobson, Meghan L. Meyer, Andrew T. Campbell, Jeremy F. Huckins
Software Mentions: 5
Published: about 5 years ago

10.1186/s12974-019-1418-3

Correlation of alteration of HLA-F expression and clinical characterization in 593 brain glioma samples
Cited by: 36
Author(s): Enshan Feng, Tingyu Liang, Xiaoyong Wang, Juan Du, Kai Tang, Xiaoxuan Wang, Fang Wang, Guoxiang You
Software Mentions: 5
Published: over 7 years ago

10.1523/JNEUROSCI.0827-19.2019

Mammillothalamic Disconnection Alters Hippocampocortical Oscillatory Activity and Microstructure: Implications for Diencephalic Amnesia
Cited by: 34
Author(s): Christopher M. Dillingham, Michal M. Milczarek, James C. Perry, Bethany E. Frost, Greg D. Parker, Yaniv Assaf, Frank Sengpiel, Shane M. O’Mara, Seralynne Denise Vann
Software Mentions: 5
Published: about 7 years ago

10.1155/2021/2042114

Identification of Prognostic Metabolism-Related Genes in Clear Cell Renal Cell Carcinoma
Cited by: 8
Author(s): Yusa Chen, Yumei Liang, Ying Chen, Shan Ouyang, Kanghan Liu, Yin Wu
Software Mentions: 5
Published: almost 5 years ago

10.1155/2021/5574150

Identifying Prognostic Significance of RCL1 and Four-Gene Signature as Novel Potential Biomarkers in HCC Patients
Cited by: 5
Author(s): Jun Liu, Shan-Qiang Zhang, Jing Chen, Zhibin Li, Qingming Lu, Yu-Shuai Han, Wenjie Dai, Chengyu Xie, Jicheng Li
Software Mentions: 5
Published: about 5 years ago

10.1155/2021/7391560

The Effect of Ferroptosis-Related Genes on Prognosis and Tumor Mutational Burden in Hepatocellular Carcinoma
Cited by: 8
Author(s): Hao Zhang, Renzheng Liu, Lin Sun, Weidong Guo, Xiao Hu
Software Mentions: 5
Published: about 5 years ago

10.1155/2021/3603030

BOP1 Used as a Novel Prognostic Marker and Correlated with Tumor Microenvironment in Pan-Cancer
Cited by: 2
Author(s): Wei Li, Peipei Song, Mengyuan Zhao, Lina Gao, Jianqin Xie, Chongge You
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.isci.2021.103021

Salmonella enterica from a soldier from the 1652 siege of Barcelona (Spain) supports historical transatlantic epidemic contacts
Cited by: 2
Author(s): Toni de-Dios, Pablo Carrión, Ïñigo Olalde, Laia Llovera Nadal, Esther Lizano, Dídac Pàmies, Tomàs Marqués-Bonet, François Balloux, Lucy van Dorp, Carles Lalueza‐Fox
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.isci.2021.103092

The gut microbiota instructs the hepatic endothelial cell transcriptome
Cited by: 11
Author(s): Henning Formes, Joana P. Bernardes, Amrit Mann, Franziska Bayer, Giulia Pontarollo, Klytaimnistra Kiouptsi, Katrin Schäfer, Sebastian Attig, Teodora Nikolova, Thomas G. Hofmann, Jörn M. Schattenberg, Hristo Todorov, Susanne Gerber, Philip Rosenstiel, Tobias Bopp, Felix Sommer, Carsten Reinhardt
Software Mentions: 5
Published: almost 5 years ago

10.18632/oncotarget.11772

Hypoxia-responsive miR-210 promotes self-renewal capacity of colon tumor-initiating cells by repressing ISCU and by inducing lactate production
Cited by: 47
Author(s): Pit Ullmann, Komal Qureshi-Baig, Fabien Rodriguez, Aurélien Ginolhac, Yannic Nonnenmacher, Dominik Ternes, Jil Weiler, Karoline Gäbler, Christelle Bahlawane, Karsten Hiller, Serge Haan, Elisabeth Letellier
Software Mentions: 5
Published: almost 10 years ago

10.1186/1471-2105-11-45

NeatMap - non-clustering heat map alternatives in R
Cited by: 77
Author(s): Satwik Rajaram, Yoshitsugu Oono
Software Mentions: 4
Published: over 16 years ago

10.3389/fmicb.2019.00348

Mycobiome Diversity in Traditionally Prepared Starters for Alcoholic Beverages in India by High-Throughput Sequencing Method
Cited by: 21
Author(s): Shankar Prasad Sha, Mangesh V. Suryavanshi, Jyoti Prakash Tamang
Software Mentions: 4
Published: over 7 years ago

10.1080/20002297.2021.1946316

Microbial characteristics across different tongue coating types in a healthy population
Cited by: 5
Author(s): Hairong Chen, Qingwei Li, Min Li, Sheng Liu, Chensi Yao, Zixiong Wang, Zhixin Zhao, Ping Liu, Fan Yang, Xinjian Li, Jun Wang, Yi-Xin Zeng, Xiaolin Tong
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10799

The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies
Cited by: 23
Author(s): Daniel Marquina, Mateusz Buczek, Fredrik Ronquist, Piotr Łukasik
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.11995

The modulatory properties of <i>Astragalus membranaceus</i> treatment on endometrial cancer: an integrated pharmacological method
Cited by: 4
Author(s): Qianqian Zhang, Xianghua Huang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-018-2371-3

Integrating omics datasets with the OmicsPLS package
Cited by: 48
Author(s): Said el Bouhaddani, Hae‐Won Uh, Geurt Jongbloed, Caroline Hayward, Lucija Klarić, Szymon M. Kiełbasa, Jeanine J. Houwing‐Duistermaat
Software Mentions: 4
Published: almost 8 years ago

10.3389/fonc.2020.526009

Prediction of Postoperative Ileus in Patients With Colorectal Cancer by Preoperative Gut Microbiota
Cited by: 14
Author(s): Ye Jin, Rui Geng, Yang Liu, Lujia Liu, Xiangren Jin, Fuya Zhao, Jing Feng, Yunwei Wei
Software Mentions: 4
Published: almost 6 years ago

10.3390/genes7040013

Bioinformatics Analysis of MAPKKK Family Genes in Medicago truncatula
Cited by: 10
Author(s): Wei Li, Hanyun Xu, Ying Liu, Lili Song, Changhong Guo, Yongjun Shu
Software Mentions: 4
Published: over 10 years ago

10.1186/s12889-020-09278-0

Spatial analysis of factors associated with HIV infection in Malawi: indicators for effective prevention
Cited by: 41
Author(s): Jerry John Nutor, Henry Ofori Duah, Pascal Agbadi, Precious Adade Duodu, Kaboni Whitney Gondwe
Software Mentions: 4
Published: about 6 years ago

10.3390/ijms22147250

Drugs and Epigenetic Molecular Functions. A Pharmacological Data Scientometric Analysis
Cited by: 5
Author(s): Dario Kringel, Sebastian Malkusch, Jörn Lötsch
Software Mentions: 4
Published: about 5 years ago

10.1038/s41420-021-00473-5

The role of ferroptosis in breast cancer patients: a comprehensive analysis
Cited by: 54
Author(s): Zeng-Hong Wu, Yun Tang, Hong Yu, Huadong Li
Software Mentions: 4
Published: over 5 years ago

10.3390/genes8110329

Flanking Variation Influences Rates of Stutter in Simple Repeats
Cited by: 19
Author(s): August E. Woerner, Jonathan L. King, Bruce Budowle
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12885-019-5863-2

Long term outcome after 48 Gy stereotactic ablative body radiotherapy for peripheral stage I non-small cell lung cancer
Cited by: 4
Author(s): Emilie Dubaere, M. Goffaux, Marie Wanet, Benoît Bihin, Céline Gheldof, A S Demoulin, A. Bolly, F. Bustin, Fabrice Duplaquet, P. E. Baugnée, M. Gustin, Vincent Hers, F. Maisin, Éric Marchand, Sebahat Ocak, Lionel Pirard, Oswald Vancutsem, Evelyne Van Neck, G Vandermoten, L. Zaharia, Vincent Remouchamps
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2018.01657

Functional and Genome Sequence-Driven Characterization of tal Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian Xanthomonas oryzae pv. oryzae Strains
Cited by: 29
Author(s): Hinda Doucouré, Pérez-Quintero Al, Ganna Reshetnyak, C. Tekete, Florence Auguy, Emilie Thomas, Ralf Koebnik, Boris Szurek, Ousmane Koïta, Verdier, Sébastien Cunnac
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-020-79924-5

Urban street tree biodiversity and antidepressant prescriptions
Cited by: 74
Author(s): Melissa R. Marselle, Diana E. Bowler, Jan Watzema, David Eichenberg, Toralf Kirsten, Aletta Bonn
Software Mentions: 4
Published: over 5 years ago

10.1038/s41420-021-00462-8

NR5A2 transcriptional activation by BRD4 promotes pancreatic cancer progression by upregulating GDF15
Cited by: 10
Author(s): Feng Guo, Yingke Zhou, Hui Guo, Dianyun Ren, Xin Jin, Heshui Wu
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22010275

The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function
Cited by: 8
Author(s): Yashwanth Subbannayya, Markus Haug, Sneha M. Pinto, Varshasnata Mohanty, Hany Zakaria Meås, Trude Helen Flo, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-021-01082-1

Diurnal variation in the human skin microbiome affects accuracy of forensic microbiome matching
Cited by: 10
Author(s): David E. Wilkins, Xinzhao Tong, Marcus H. Y. Leung, Christopher E. Mason, Patrick K. H. Lee
Software Mentions: 4
Published: about 5 years ago

10.1016/j.ahj.2016.10.020

Inadequacy of existing clinical prediction models for predicting mortality after transcatheter aortic valve implantation
Cited by: 41
Author(s): Glen P. Martin, Matthew Sperrin, Peter Ludman, Mark de Belder, Chris P Gale, William D. Toff, Neil Moat, Uday Trivedi, Iain Buchan, Mamas A. Mamas
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-018-2489-3

A new sequence logo plot to highlight enrichment and depletion
Cited by: 43
Author(s): Kushal Kumar Dey, Dongyue Xie, Matthew Stephens
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-78983-y

Local injections of β-NGF accelerates endochondral fracture repair by promoting cartilage to bone conversion
Cited by: 13
Author(s): Kevin O. Rivera, Fabrizio Russo, Ryan M. Boileau, Ryan E. Tomlinson, Theodore Miclau, Ralph Marcucio, Tejal A. Desai, Chelsea S. Bahney
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9071503

Metagenomic Insight of a Full Scale Eco-Friendly Treatment System of Textile Dye Wastewater Using Bioaugmentation of the Composite Culture CES-1
Cited by: 6
Author(s): Aalfin-Emmanuel Santhanarajan, Woo Jun Sul, Keunje Yoo, Hoon Je Seong, Hong Gi Kim, Sung-Cheol Koh
Software Mentions: 4
Published: about 5 years ago

10.1093/molbev/msaa324

Repeated Evolution of Inactive Pseudonucleases in a Fungal Branch of the Dis3/RNase II Family of Nucleases
Cited by: 8
Author(s): Elizabeth R. Ballou, Atlanta G. Cook, Eric Wallace
Software Mentions: 4
Published: over 5 years ago

10.1186/s12888-021-03154-w

Attention-deficit/hyperactivity disorder with developmental coordination disorder: 24-year follow-up of a population-based sample
Cited by: 8
Author(s): Valdemar Landgren, Elisabeth Fernell, Christopher Gillberg, Magnus Landgren, Mats Johnson
Software Mentions: 4
Published: over 5 years ago

10.3390/v13010009

Characterization of a Novel Mitovirus of the Sand Fly Lutzomyia longipalpis Using Genomic and Virus–Host Interaction Signatures
Cited by: 14
Author(s): Paula Luize Camargos Fonseca, Flávia V Ferreira, Felipe Silva, Liliane Santana Oliveira, João Trindade Marques, Aristóteles Goés-Neto, Eric Roberto Guimarães Rocha Aguiar, Arthur Gruber
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-021-07559-5

Effect of genome composition and codon bias on infectious bronchitis virus evolution and adaptation to target tissues
Cited by: 8
Author(s): Giovanni Franzo, Claudia Maria Tucciarone, Matteo Legnardi, Mattia Cecchinato
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78366-3

Human kidney clonal proliferation disclose lineage-restricted precursor characteristics
Cited by: 7
Author(s): Osnat Cohen-Zontag, Rotem Gershon, Orit Harari‐Steinberg, Itamar Kanter, Dorit Omer, Oren Pleniceanu, Gal Tam, Sarit Oriel, H Ben-Hur, Guy Katz, Zohar Dotan, Tomer Kalisky, Benjamin Dekel, Naomi Pode‐Shakked
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.680918

Hippo Pathway Core Genes Based Prognostic Signature and Immune Infiltration Patterns in Lung Squamous Cell Carcinoma
Cited by: 26
Author(s): Chang Gu, Jiafei Chen, Xuening Dang, Chunji Chen, Zhenyu Huang, Weidong Shen, Xin Shi, Chenyang Dai, Chang Chen
Software Mentions: 4
Published: over 5 years ago

10.3390/s20113031

Performance of a Low-Cost Sensor Community Air Monitoring Network in Imperial County, CA
Cited by: 8
Author(s): Paul English, Heather K. Amato, Esther Bejarano, Graeme Carvlin, Humberto Lugo, Michael Jerrett, Galatea King, Daniel Madrigal, Dan Meltzer, Amanda Northcross, Luis José Imedio Olmedo, Edmund Seto, Christian Torres, A. S. Wilkie, Michelle Wong
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-78841-x

Gravettian cranial morphology and human group affinities during the European Upper Palaeolithic
Cited by: 6
Author(s): Aurélien Mounier, Yann Heuzé, Mathilde Samsel, Sergey Vasilyev, Laurent Klaric, Sébastien Villotte
Software Mentions: 4
Published: over 5 years ago

10.1186/s13020-020-00377-z

Comparison of volatile compounds in different parts of fresh Amomum villosum Lour. from different geographical areas using cryogenic grinding combined HS–SPME–GC–MS
Cited by: 14
Author(s): Lingxiao Chen, Yunfeng Lai, Wei‐Xiong Zhang, Jing Cai, Hao Quan Hu, Ying Wang, Jing Zhao, Shaoping Li
Software Mentions: 4
Published: almost 6 years ago

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