cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.17305/bjbms.2020.5096

Bionformatics analysis reveals TSPAN1 as a candidate biomarker of progression and prognosis in pancreatic cancer
Cited by: 5
Author(s): Chenhui Ma, Zelong Cui, YiChao Wang, Lei Zhang, Jiaxin Wen, Huaibin Guo, Na Li, Wanxing Zhang
Software Mentions: 5
Published: over 5 years ago

10.1177/0146167220946187

The Association Between Threat and Politics Depends on the Type of Threat, the Political Domain, and the Country
Cited by: 24
Author(s): Mark J. Brandt, Felicity Mary Turner-Zwinkels, Beste Karapirinler, Florian van Leeuwen, Michael Bender, Yvette van Osch, Byron G. Adams
Software Mentions: 5
Published: almost 6 years ago

10.7554/eLife.56029

Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traits
Cited by: 14
Author(s): Melissa L. Spear, Alex Diaz-Papkovich, Elad Ziv, Joseph Yracheta, Simon Gravel, Dara G. Torgerson, Ryan D. Hernández
Software Mentions: 5
Published: over 5 years ago

10.1093/jxb/eraa289

Measuring Rubisco activity: challenges and opportunities of NADH-linked microtiter plate-based and 14C-based assays
Cited by: 11
Author(s): Cristina Rodrigues Gabriel Sales, Anabela Bernardes da Silva, Elizabete Carmo‐Silva
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0244829

Whole-genome sequence analysis and comparisons between drug-resistance mutations and minimum inhibitory concentrations of Mycobacterium tuberculosis isolates causing M/XDR-TB
Cited by: 16
Author(s): Ditthawat Nonghanphithak, Orawee Kaewprasert, Pratchakan Chaiyachat, Wipa Reechaipichitkul, Angkana Chaiprasert, Kiatichai Faksri
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.09347

A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy
Cited by: 332
Author(s): Matthias C. Munder, Daniel Midtvedt, Titus M. Franzmann, Elisabeth Nüske, Oliver Otto, Maik Herbig, Elke Ulbricht, Paul Müller, Anna Taubenberger, Shovamayee Maharana, Liliana Malinovska, Doris Richter, Jochen Guck, Vasily Zaburdaev, Simon Alberti
Software Mentions: 5
Published: over 10 years ago

10.7554/eLife.33402

Rev7 and 53BP1/Crb2 prevent RecQ helicase-dependent hyper-resection of DNA double-strand breaks
Cited by: 20
Author(s): Bryan A. Leland, Angela C Chen, Amy Zhao, Robert Wharton, Megan C. King
Software Mentions: 5
Published: about 8 years ago

10.7554/eLife.51593

Diminished responses to bodily threat and blunted interoception in suicide attempters
Cited by: 32
Author(s): Danielle C. DeVille, Rayus Kuplicki, Jennifer L. Stewart, Tulsa Investigators, Robin L. Aupperle, Jerzy Bodurka, Yoon‐Hee Cha, Justin S. Feinstein, Jonathan Savitz, Teresa A. Victor, Martin P. Paulus, Sahib S. Khalsa
Software Mentions: 5
Published: about 6 years ago

10.1186/s12935-019-0866-2

LncRNA H19 regulates PI3K–Akt signal pathway by functioning as a ceRNA and predicts poor prognosis in colorectal cancer: integrative analysis of dysregulated ncRNA-associated ceRNA network
Cited by: 45
Author(s): Min-Er Zhong, Yanyu Chen, Guannan Zhang, Lai Xu, Wei Ge, Bin Wu
Software Mentions: 5
Published: about 7 years ago

10.1038/srep37393

Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer
Cited by: 84
Author(s): Stephan H. Bernhart, Helene Kretzmer, Lesca M. Holdt, Frank Jühling, Ole Ammerpohl, Anke Bergmann, Bernd H. Northoff, Gero Doose, Reiner Siebert, Peter F. Stadler, Steve Hoffmann
Software Mentions: 5
Published: over 9 years ago

10.7554/eLife.58716

Does the human placenta express the canonical cell entry mediators for SARS-CoV-2?
Cited by: 210
Author(s): Roger Piqué-Regi, Roberto Romero, Adi L. Tarca, Francesca Luca, Yi Xu, Adnan Alazizi, Yaozhu Leng, Chaur Dong Hsu, Nardhy Gomez-López
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-021-98343-8

Low serum vitamin D concentrations in Spring-born dairy calves are associated with elevated peripheral leukocytes
Cited by: 7
Author(s): Susana Flores‐Villalva, Megan B. O’Brien, Cian Reid, Seán Lacey, Stephen V. Gordon, Corwin D. Nelson, Kieran G. Meade
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0255290

High-density DArT-based SilicoDArT and SNP markers for genetic diversity and population structure studies in cassava (Manihot esculenta Crantz)
Cited by: 7
Author(s): Bright Gyamfi Adu, R. Akromah, Stephen Amoah, Daniel Nyadanu, Alex Yeboah, L. M. Aboagye, R. Adu Amoah, Eva Gyamfuaa Owusu
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2019.00931

Novel Model for Comprehensive Assessment of Robust Prognostic Gene Signature in Ovarian Cancer Across Different Independent Datasets
Cited by: 2
Author(s): Zhitong Bing, Yu Yao, Jie Xiong, Jinhui Tian, Xiangqian Guo, Xiuxia Li, Jingyun Zhang, Xiue Shi, Yanying Zhang, Kehu Yang
Software Mentions: 5
Published: over 6 years ago

10.3390/ph14020087

Identification of 37 Heterogeneous Drug Candidates for Treatment of COVID-19 via a Rational Transcriptomics-Based Drug Repurposing Approach
Cited by: 4
Author(s): Andrea Gelemanović, Tinka Vidović, Višnja Stepanić, Katarina Trajković
Software Mentions: 5
Published: over 5 years ago

10.1186/s13068-018-1215-8

The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973
Cited by: 42
Author(s): Xiaoming Tan, Songjun Hou, Kuo Song, Jens Georg, Stephan Klähn, Xuefeng Lü, Wolfgang R. Hess
Software Mentions: 5
Published: almost 8 years ago

10.3390/ijms20020296

High-Throughput Omics and Statistical Learning Integration for the Discovery and Validation of Novel Diagnostic Signatures in Colorectal Cancer
Cited by: 30
Author(s): Nguyen Phuoc Long, Seongoh Park, Nguyễn Hoàng Anh, Tran Diem Nghi, Sang Jun Yoon, Jeong Hill Park, Jong-Tae Lim, Sung Won Kwon
Software Mentions: 5
Published: over 7 years ago

10.1002/pld3.239

N6‐methyladenosine and RNA secondary structure affect transcript stability and protein abundance during systemic salt stress in Arabidopsis
Cited by: 35
Author(s): Marianne C. Kramer, Kevin A. Janssen, Kyle Palos, Andrew D. L. Nelson, Lee E. Vandivier, Benjamin A. García, Eric Lyons, Mark A. Beilstein, Brian D. Gregory
Software Mentions: 5
Published: almost 6 years ago

10.12688/f1000research.6536.1

A reanalysis of mouse ENCODE comparative gene expression data
Cited by: 90
Author(s): Yoav Gilad, Orna Mizrahi-Man
Software Mentions: 5
Published: about 11 years ago

10.7554/eLife.62529

Journal policies and editors’ opinions on peer review
Cited by: 24
Author(s): Daniel G Hamilton, Hannah Fraser, Rink Hoekstra, Fiona Fidler
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2020.591667

Effects of RNA Binding Proteins on the Prognosis and Malignant Progression in Prostate Cancer
Cited by: 13
Author(s): Xiaoliang Hua, Shengdong Ge, Juan Chen, Li Zhang, Sheng Tai, Chaozhao Liang
Software Mentions: 5
Published: over 5 years ago

10.1093/gigascience/giaa125

Localized effect of treated wastewater effluent on the resistome of an urban watershed
Cited by: 17
Author(s): Christopher N Thornton, Windy Tanner, James VanDerslice, William J. Brazelton
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0169115

Field-Evolved Resistance in Corn Earworm to Cry Proteins Expressed by Transgenic Sweet Corn
Cited by: 133
Author(s): Galen P. Dively, P. Dilip Venugopal, Chad Finkenbinder
Software Mentions: 5
Published: over 9 years ago

10.3389/fgene.2021.706854

Crosslink: An R Package for Network Visualization of Grouped Nodes
Cited by: 1
Author(s): Di Liu, Zhijie Bai, Bing Liu, Zongcheng Li
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12967-020-02323-x

Development of an autophagy-related gene expression signature for prognosis prediction in prostate cancer patients
Cited by: 63
Author(s): Daixing Hu, Li Jiang, Shengjun Luo, Xin Zhao, Hao Hu, Guozhi Zhao, Wei Tang
Software Mentions: 5
Published: about 6 years ago

10.3390/pharmaceutics13020264

Evaluation of Current Amikacin Dosing Recommendations and Development of an Interactive Nomogram: The Role of Albumin
Cited by: 3
Author(s): Jonás Samuel Pérez-Blanco, Elena Fernández, María Victoria Martínez Calvo, José M. Lanao, Ana Martín-Suárez
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0246297

Rhabdomyolysis related to acute recreational drug toxicity—A Euro-DEN study
Cited by: 9
Author(s): W. James Waldman, Piotr Maciej Kabata, Alison Dines, David M. Wood, Chris Yates, Fridtjof Heyerdahl, Knut Erik Hovda, Isabelle Giraudon, Jacek Sein Anand
Software Mentions: 5
Published: over 5 years ago

10.1186/s13068-021-01915-z

Physiological and transcriptional response to drought stress among bioenergy grass Miscanthus species
Cited by: 10
Author(s): Jose J De Vega, Abel Teshome, Manfred Klaas, Jim Grant, John Finnan, Susanne Barth
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.634116

A Novel Six-mRNA Signature Predicts Survival of Patients With Glioblastoma Multiforme
Cited by: 8
Author(s): Zhentao Liu, Hao Zhang, Haitao Hu, Zengyu Cai, Chengyin Lu, Qiang Liang, Jun Qian, Chunhui Wang, Lei Jiang
Software Mentions: 5
Published: over 5 years ago

10.1002/2211-5463.13085

IGLL5 is correlated with tumor‐infiltrating immune cells in clear cell renal cell carcinoma
Cited by: 11
Author(s): Zian Xia, Xingyuan Wang, Licheng Cai, Wengang Jian, Cheng Zhang
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-73341-4

Brew temperature, at fixed brew strength and extraction, has little impact on the sensory profile of drip brew coffee
Cited by: 14
Author(s): Mackenzie E. Batali, William D. Ristenpart, Jean‐Xavier Guinard
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0217839

The allometry of proboscis length in Melittidae (Hymenoptera: Apoidae) and an estimate of their foraging distance using museum collections
Cited by: 5
Author(s): Annalie Melin, Harald W. Krenn, Raurie C.K. Bowie, Colin M. Beale, John C. Manning, Jonathan F. Colville
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0200557

Positive association between moderate altitude and chronic lower respiratory disease mortality in United States counties
Cited by: 8
Author(s): Jae Cheol Hwang, Miso Jang, Namkug Kim, Seunghyun Choi, Yeon‐Mok Oh, Joon Beom Seo
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0154722

Genome Sequencing and Comparative Analysis of Saccharomyces cerevisiae Strains of the Peterhof Genetic Collection
Cited by: 14
Author(s): Polina Drozdova, О. В. Тарасов, Andrew G. Matveenko, Elina A. Radchenko, Julia V. Sopova, Dmitrii E. Polev, Sergey G. Inge-Vechtomov, Pavel Dobrynin
Software Mentions: 5
Published: about 10 years ago

10.1093/femsec/fiy225

Highly competitive fungi manipulate bacterial communities in decomposing beech wood (Fagus sylvatica)
Cited by: 29
Author(s): Sarah Johnston, Jennifer Hiscox, Melanie Savoury, Lynne Boddy, Andrew J. Weightman
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0235660

Transmission network reconstruction for foot-and-mouth disease outbreaks incorporating farm-level covariates
Cited by: 12
Author(s): Simon M. Firestone, Yoko Hayama, Max S. Y. Lau, Takehisa Yamamoto, Tatsuya Nishi, Richard Bradhurst, Haydar Demirhan, Mark Stevenson, Toshiyuki Tsutsui
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpls.2020.01005

Similar Seed Composition Phenotypes Are Observed From CRISPR-Generated In-Frame and Knockout Alleles of a Soybean KASI Ortholog
Cited by: 8
Author(s): Kamaldeep S. Virdi, Madison Spencer, Adrian O. Stec, Yer Xiong, Ryan Merry, Gary J. Muehlbauer, Robert M. Stupar
Software Mentions: 5
Published: almost 6 years ago

10.14814/phy2.13376

Male apoE*3-Leiden.CETP mice on high-fat high-cholesterol diet exhibit a biphasic dyslipidemic response, mimicking the changes in plasma lipids observed through life in men
Cited by: 18
Author(s): Yared Paalvast, Albert Gerding, Yanan Wang, Vincent W. Bloks, Theo H. van Dijk, Rick Havinga, Ko Willems van Dijk, Patrick C.N. Rensen, Barbara M. Bakker, Jan Albert Kuivenhoven, Albert K. Groen
Software Mentions: 5
Published: over 8 years ago

10.7554/eLife.63088

The RNA-binding protein SFPQ preserves long-intron splicing and regulates circRNA biogenesis in mammals
Cited by: 37
Author(s): Lotte Victoria Winther Stagsted, Eoghan Thomas O’Leary, Karoline K Ebbesen, Thomas B. Hansen
Software Mentions: 5
Published: over 5 years ago

10.18632/oncotarget.27614

miR-708-5p targets oncogenic prostaglandin E2 production to suppress a pro-tumorigenic phenotype in lung cancer cells
Cited by: 13
Author(s): Nicholas J. Monteleone, Carol S. Lutz
Software Mentions: 5
Published: almost 6 years ago

10.3389/fgene.2021.622683

Bioinformatics Analysis Identifies Molecular Markers Regulating Development and Progression of Endometriosis and Potential Therapeutic Drugs
Cited by: 7
Author(s): Ying Peng, Cheng Peng, Fang Zheng, Gang Chen
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0229183

Divorce and adolescent academic achievement: Heterogeneity in the associations by parental education
Cited by: 9
Author(s): Sondre Aasen Nilsen, Kyrre Breivik, Bente Wold, Kristin Gärtner Askeland, Børge Sivertsen, Mari Hysing, Tormod Bøe
Software Mentions: 5
Published: over 6 years ago

10.1002/prp2.424

Pharmacokinetics of metformin in patients with chronic kidney disease stage 4 and metformin-naïve type 2 diabetes
Cited by: 9
Author(s): Ajith Dissanayake, Mark C. Wheldon, Chris Hood
Software Mentions: 5
Published: almost 8 years ago

10.1177/0379572120973908

Changes in Retinol Binding Protein 4 Level in Undernourished Children After a Nutrition Intervention Are Positively Associated With Mother’s Weight but Negatively With Mother’s Height, Intake of Whole Milk, and Markers of Systemic Inflammation: Results From a Community-Based Intervention Study
Cited by: 0
Author(s): Subhasish Das, Amran Gazi, Mehedi Hasan, Shah Mohammad Fahim, Ashraful Alam, Md. Shabab Hossain, Mustafa Mahfuz, Tahmeed Ahmed
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.36967

Topography of cancer-associated immune cells in human solid tumors
Cited by: 187
Author(s): Jakob Nikolas Kather, Meggy Suarez-Carmona, Pornpimol Charoentong, Cleo–Aron Weis, Daniela Hirsch, Peter Bankhead, Marcel Horning, Dyke Ferber, Ivan Kel, Esther Herpel, Sarah Schott, Inka Zörnig, Jochen Utikal, Alexander Marx, Timo Gaiser, Hermann Brenner, Jenny Chang‐Claude, Michael Hoffmeister, Dirk Jäger, Niels Halama
Software Mentions: 5
Published: almost 8 years ago

10.3389/fgene.2021.695124

Folate Deficiency Triggers the Abnormal Segregation of a Region With Large Cluster of CG-Rich Trinucleotide Repeats on Human Chromosome 2
Cited by: 1
Author(s): Lorenza Garribba, Ivan Vogel, Mads Lerdrup, Marisa M Gonçalves Dinis, Liqun Ren, Ying Liu
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0255433

Genotypic and phenotypic diversity of Mycobacterium tuberculosis complex genotypes prevalent in West Africa
Cited by: 5
Author(s): Stephen Osei-Wusu, Isaac Darko Otchere, Portia Morgan, Abdul Basit Musah, Ishaque Mintah Siam, Diana Asema Asandem, Theophilus Afum, Prince Asare, Adwoa Asante-Poku, Kwadwo Asamoah Kusi, Sébastien Gagneux, Dorothy Yeboah-Manu
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2020.616998

Application of an Autophagy-Related Gene Prognostic Risk Model Based on TCGA Database in Cervical Cancer
Cited by: 16
Author(s): Huadi Shi, Fulan Zhong, Xiaoqiong Yi, Zhenyi Shi, Feiyan Ou, Zhonghua Xu, Yufang Zuo
Software Mentions: 5
Published: over 5 years ago

10.1089/fpd.2017.2411

Are Food Animals Responsible for Transfer of Antimicrobial-ResistantEscherichia colior Their Resistance Determinants to Human Populations? A Systematic Review
Cited by: 109
Author(s): Dishon Muloi, Melissa J. Ward, Amy B. Pedersen, Eric M. Fèvre, Mark Woolhouse, Bram A. D. van Bunnik
Software Mentions: 5
Published: almost 8 years ago

10.3390/cancers12082322

Comparison of NGS and MFC Methods: Key Metrics in Multiple Myeloma MRD Assessment
Cited by: 14
Author(s): Katharina Kriegsmann, Michael Hundemer, Nicole Hofmeister-Mielke, Philipp Reichert, Calin-Petru Manta, Mohamed H.S. Awwad, Sandra Sauer, Uta Bertsch, Britta Besemer, Roland Fenk, Mathias Hänel, Markus Munder, Katja Weisel, Igor W Blau, Andreas Neubauer, Carsten Müller‐Tidow, Marc S. Raab, Hartmut Goldschmidt, Stefanie Huhn
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2021.637911

Phenotypic Plasticity Conferred by the Metastatic Microenvironment of the Brain Strengthens the Intracranial Tumorigenicity of Lung Tumor Cells
Cited by: 0
Author(s): Xin Wei, Kewei Bi, Bo Li
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2021.707299

Esophageal Cancer Associated Immune Genes as Biomarkers for Predicting Outcome in Upper Gastrointestinal Tumors
Cited by: 9
Author(s): Chuanhui Zhu, Qianqian Xia, Bin Gu, Mengjing Cui, Xing Zhang, Wenjing Yan, Dan Meng, Siyuan Shen, Shuqian Xie, Xueliang Li, Hua Jin, Shizhi Wang
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0245444

The relationship between social support, stressful events, and menopause symptoms
Cited by: 20
Author(s): Megan Arnot, Emily H Emmott, Ruth Mace
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2020.610704

Investigation on Potential Correlation Between Small Nuclear Ribonucleoprotein Polypeptide A and Lung Cancer
Cited by: 6
Author(s): Maoxi Yuan, Chunxiao Yu, Xin Chen, Yubing Wu
Software Mentions: 5
Published: over 5 years ago

10.1093/gigascience/giaa088

A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
Cited by: 16
Author(s): Eugenie C Yen, Shane McCarthy, Juan A. Galarza, Tomas N Generalovic, Sarah Pelan, Petr Nguyen, Joana I. Meier, Ian A. Warren, Johanna Mappes, Richard Durbin, Chris D. Jiggins
Software Mentions: 5
Published: almost 6 years ago

10.1038/srep40803

Dynamics of Bemisia tabaci biotypes and insecticide resistance in Fujian province in China during 2005–2014
Cited by: 43
Author(s): Feng-Luan Yao, Yu Zheng, Xiaoyan Huang, Xue-Ling Ding, Jiuran Zhao, Nicolas Desneux, Yumei He, Qiyong Weng
Software Mentions: 5
Published: over 9 years ago

10.3390/ijms19113421

Composition and Genetic Diversity of the Nicotiana tabacum Microbiome in Different Topographic Areas and Growth Periods
Cited by: 14
Author(s): Xiaolong Yuan, Min Cao, Xinmin Liu, Yongmei Du, Guoming Shen, Zhongfeng Zhang, Jinhai Li, Peng Zhang
Software Mentions: 5
Published: over 7 years ago

10.1093/database/baaa096

The IMEx coronavirus interactome: an evolving map of Coronaviridae–host molecular interactions
Cited by: 31
Author(s): Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, Negin Rahimzadeh, Sylvie Ricard‐Blum, Łukasz Salwiński, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra Orchard, Igor Jurišica, Henning Hermjakob, Pablo Porras
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.686044

A Novel Prognostic Model Based on Ferroptosis-Related Gene Signature for Bladder Cancer
Cited by: 27
Author(s): Libo Yang, Chunyan Li, Yang Qin, Guoying Zhang, Bin Zhao, Ziyuan Wang, Yang H. Huang, Yong Yang
Software Mentions: 5
Published: almost 5 years ago

10.1038/ismej.2017.101

Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization
Cited by: 118
Author(s): Beate M. Slaby, Thomas Hackl, Hannes Horn, Kristina Bayer, Ute Hentschel
Software Mentions: 5
Published: almost 9 years ago

10.3389/fonc.2020.605097

An Integrative Pan-Cancer Analysis Revealing LCN2 as an Oncogenic Immune Protein in Tumor Microenvironment
Cited by: 33
Author(s): Wen‐Xiu Xu, Jian Zhang, Yu-Ting Hua, Su-Jin Yang, Dandan Wang, Jinhai Tang
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-021-01018-9

Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome
Cited by: 24
Author(s): Julien Tap, Stine Störsrud, Boris Le Nevé, Aurélie Cotillard, Nicolas Pons, Joël Doré, Lena Öhman, Hans Törnblom, Muriel Derrien, Magnus Simrén
Software Mentions: 5
Published: over 5 years ago

10.1038/s41396-020-0683-6

Drought and plant litter chemistry alter microbial gene expression and metabolite production
Cited by: 61
Author(s): Ashish Malik, Tami L. Swenson, Claudia Weihe, Eric W. Morrison, Jennifer B. H. Martiny, Eoin L. Brodie, Trent Northen, Steven D. Allison
Software Mentions: 5
Published: about 6 years ago

10.1172/JCI91363

The U2AF1S34F mutation induces lineage-specific splicing alterations in myelodysplastic syndromes
Cited by: 70
Author(s): Bon Ham Yip, Violetta Steeples, Emmanouela Repapi, Richard N. Armstrong, Miriam Llorian, S. Roy, Jacqueline Shaw, Hamid Dolatshad, Stephen Taylor, Amit Verma, Matthias Bartenstein, Paresh Vyas, Nicholas C. P. Cross, Luca Malcovati, Mario Cazzola, Eva Hellström‐Lindberg, Seishi Ogawa, Christopher W.J. Smith, Andrea Pellagatti, Jacqueline Boultwood
Software Mentions: 5
Published: about 9 years ago

10.34133/2019/5893953

Using High-Throughput Phenotyping to Explore Growth Responses to Mycorrhizal Fungi and Zinc in Three Plant Species
Cited by: 22
Author(s): Stephanie J. Watts‐Williams, Nathaniel Jewell, Chris Brien, Bettina Berger, Trevor Garnett, Timothy R. Cavagnaro
Software Mentions: 5
Published: over 7 years ago

10.1007/s00125-021-05527-y

MAIT cell alterations in adults with recent-onset and long-term type 1 diabetes
Cited by: 5
Author(s): Isabelle Nel, Lucie Beaudoin, Zouriatou Gouda, Camille Rousseau, Pauline Soulard, Matthieu Rouland, Léo Bertrand, Christian Boîtard, Étienne Larger, Agnès Lehuen
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0236838

Microplastic contamination of drinking water: A systematic review
Cited by: 137
Author(s): E Danopoulos, Maureen Twiddy, Jeanette M. Rotchell
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0154712

Stimulation of the Salicylic Acid Pathway Aboveground Recruits Entomopathogenic Nematodes Belowground
Cited by: 21
Author(s): Camila C. Filgueiras, Denis S. Willett, Alcides Moino, Martín Pareja, Fahiem El Borai, D. W. Dickson, Lukasz L. Stelinski, Larry W. Duncan
Software Mentions: 5
Published: about 10 years ago

10.1186/s13071-018-2980-8

Circulation of Dirofilaria immitis and Dirofilaria repens in the Danube Delta Biosphere Reserve, Romania
Cited by: 17
Author(s): Alexandru Tomazatos, Dániel Cadar, Edina Török, Iulia Maranda, Cintia Horváth, Lujza Keresztes, Marina Spînu, Stéphanie Jansen, Hanna Jöst, Jonas Schmidt‐Chanasit, Egbert Tannich, Renke Lühken
Software Mentions: 5
Published: almost 8 years ago

10.1186/s13287-021-02508-1

Transcriptome-wide m6A methylome during osteogenic differentiation of human adipose-derived stem cells
Cited by: 4
Author(s): Weihao Sun, Yidan Song, Kai Xia, Liyuan Yu, Xinqi Huang, Zhihe Zhao, Jun Liu
Software Mentions: 5
Published: almost 5 years ago

10.1038/srep43323

Development of a pipeline for automated, high-throughput analysis of paraspeckle proteins reveals specific roles for importin α proteins
Cited by: 6
Author(s): Andrew T. Major, Yoichi Miyamoto, Camden Lo, David A. Jans, Kate Loveland
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0198342

Characterization of the fecal and mucosa-associated microbiota in dogs with colorectal epithelial tumors
Cited by: 25
Author(s): Kristin Marie Valand Herstad, Aina Elisabeth Fossum Moen, John Christian Gaby, Lars Moe, Ellen Skancke
Software Mentions: 5
Published: about 8 years ago

10.3389/fonc.2020.00669

Identifying Predictive Gene Expression and Signature Related to Temozolomide Sensitivity of Glioblastomas
Cited by: 16
Author(s): Hong‐Qing Cai, Ang-Si Liu, Minjie Zhang, Hou-Jie Liu, Xiaoli Meng, Hai-Peng Qian, Jinghai Wan
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.ppat.1004940

Geometric Constraints Dominate the Antigenic Evolution of Influenza H3N2 Hemagglutinin
Cited by: 41
Author(s): Austin G. Meyer, Claus O. Wilke
Software Mentions: 5
Published: about 11 years ago

10.1186/s40168-020-00850-9

The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts
Cited by: 24
Author(s): Avihai Zolti, Stefan J. Green, Noa Sela, Yitzhak Hadar, Dror Minz
Software Mentions: 5
Published: about 6 years ago

10.1186/s12967-019-1879-2

Clinico-pathological associations and concomitant mutations of the RAS/RAF pathway in metastatic colorectal cancer
Cited by: 11
Author(s): Edoardo Isnaldi, Anna Garuti, Gabriella Cirmena, Stefano Scabini, Edoardo Rimini, Lorenzo Ferrando, Michela Lia, Roberto Murialdo, Lucia Tixi, Enrico Carminati, Andrea Panaro, M. Gallo, Federica Grillo, Luca Mastracci, Lazzaro Repetto, Roberto Fiocca, Emanuele Romairone, Gabriele Zoppoli, Alberto Ballestrero
Software Mentions: 5
Published: about 7 years ago

10.1186/s13071-020-04424-4

Molecular signatures of the rediae, cercariae and adult stages in the complex life cycles of parasitic flatworms (Digenea: Psilostomatidae)
Cited by: 3
Author(s): Maksim A. Nesterenko, Viktor V. Starunov, Sergei V. Shchenkov, Anna R. Maslova, Sofia Denisova, Andrey I. Granovich, Andrej A. Dobrovolskij, Konstantin Khalturin
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-017-00665-z

Delta-radiomics features for the prediction of patient outcomes in non–small cell lung cancer
Cited by: 238
Author(s): Xenia Fave, Lifei Zhang, Jinzhong Yang, D. Mackin, Peter A Balter, Daniel R. Gomez, David S Followill, A. Kyle Jones, Francesco C. Stingo, Zhongxing Liao, Radhe Mohan, Laurence Edward Court
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0234985

Effect of TSH on Non-Alcoholic Fatty Liver Disease (NAFLD) independent of obesity in children of predominantly Hispanic/Latino ancestry by causal mediation analysis
Cited by: 4
Author(s): Presley Nichols, Yue Pan, Benjamin May, Martina Pavlicová, John C. Rausch, Ali Mencin, Vidhu Thaker
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-71864-4

Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing
Cited by: 25
Author(s): Katherine Chacón-Vargas, Julian Torres, Martha Gilés-Gómez, Adelfo Escalante, John G. Gibbons
Software Mentions: 5
Published: almost 6 years ago

10.3390/jcm9082452

Insight in miRNome of Long-Term Non-Progressors and Elite Controllers Exposes Potential RNAi Role in Restraining HIV-1 Infection
Cited by: 9
Author(s): Rubén Ayala-Suárez, Francisco Díez-Fuertes, Esther Calonge, Humberto Erick De La Torre Tarazona, M Gracia-Ruiz de Alda, Laura Capa, José Alcamı́
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0255411

Citizen science reveals unexpected solute patterns in semiarid river networks
Cited by: 3
Author(s): Erin Jones, Rebecca J. Frei, Raymond M. Lee, Jordan D. Maxwell, Rhetta Shoemaker, Andrew Follett, Gabriella M. Lawson, Madeleine Malmfeldt, Rachel Watts, Zachary T. Aanderud, Carter Allred, Allison Tuttle Asay, Madeline Buhman, Hunter C Burbidge, Amber Call, Trevor Crandall, Isabella M. Errigo, Natasha A. Griffin, Neil C. Hansen, Jansen C. Howe, Emily L. Meadows, Elizabeth Kujanpää, Leslie A. Lange, Monterey L. Nelson, Adam J. Norris, Elysse Ostlund, Nicholas J. Suiter, Kaylee Brook Tanner, Joseph Tolworthy, Maria Camila Vargas, Benjamin W. Abbott
Software Mentions: 5
Published: almost 5 years ago

10.1007/s00066-019-01522-w

Tumor regression during radiotherapy for non-small cell lung cancer patients using cone-beam computed tomography images
Cited by: 5
Author(s): Janita E. van Timmeren, Wouter van Elmpt, Dirk De Ruysscher, Bart Reymen, Olfred Hansen, Carsten Brink
Software Mentions: 5
Published: over 6 years ago

10.1210/clinem/dgz302

Mapping the Steroid Response to Major Trauma From Injury to Recovery: A Prospective Cohort Study
Cited by: 17
Author(s): Mark Foster, Angela E. Taylor, Neil Hill, Conor Bentley, Jonathan Bishop, Lorna Gilligan, Fozia Shaheen, Julian Bion, Joanne L. Fallowfield, David R. Woods, Irina Bancos, Mark Midwinter, Janet M. Lord, Wiebke Arlt
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.626187

Dysregulation of Transcription Factor Networks Unveils Different Pathways in Human Papillomavirus 16-Positive Squamous Cell Carcinoma and Adenocarcinoma of the Uterine Cervix
Cited by: 9
Author(s): Saloê Bispo, Ticiana Della Justina Farias, Patrícia Savio de Araujo-Souza, Ricardo Cintra, Hellen Geremias dos Santos, Natasha Andressa Nogueira Jorge, Mauro A. A. Castro, Gabriel Wajnberg, Nicole de Miranda Scherer, Maria Luiza Nogueira Dias Genta, Jesus Paula Carvalho, Luísa Lina Villa, Laura Sichero, Fábio Passetti
Software Mentions: 5
Published: about 5 years ago

10.1038/s41396-020-0669-4

Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation
Cited by: 96
Author(s): Zhichao Zhou, Patricia Q. Tran, Kristopher Kieft, Karthik Anantharaman
Software Mentions: 5
Published: about 6 years ago

10.1038/s41396-019-0518-5

Density-dependent oxylipin production in natural diatom communities: possible implications for plankton dynamics
Cited by: 18
Author(s): Ennio Russo, Giuliana d’Ippolito, Angelo Fontana, Diana Sarno, Domenico D’Alelio, Greta Busseni, Adrianna Ianora, Eric von Elert, Ylenia Carotenuto
Software Mentions: 5
Published: over 6 years ago

10.1186/s40168-018-0555-8

The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch
Cited by: 54
Author(s): Alice Michel, Lewis M. Ward, Shana K. Goffredi, Katherine S. Dawson, Daniel T. Baldassarre, Alec Brenner, Kiyoko M. Gotanda, John E. McCormack, Sean W. Mullin, Ariel O’Neill, Gabrielle S. Tender, J. Albert C. Uy, Kristie Yu, Victoria J. Orphan, Jaime A. Chaves
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-020-72206-0

Behavioral and trophic segregations help the Tahiti petrel to cope with the abundance of wedge-tailed shearwater when foraging in oligotrophic tropical waters
Cited by: 7
Author(s): Andréas Ravache, Karen Bourgeois, Henri Weimerskirch, Angélique Pagenaud, Sophie de Grissac, Mark G. R. Miller, Sylvain Dromzée, Anne Lorrain, Valérie Allain, Paco Bustamante, Jonas Bylemans, Dianne Gleeson, Yves Letourneur, Éric Vidal
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12967-021-02716-6

The potential role of chemotaxis and the complement system in the formation and progression of thoracic aortic aneurysms inferred from the weighted gene coexpression network analysis
Cited by: 5
Author(s): Chuxiang Lei, Dan Yang, Wenlin Chen, Haoxuan Kan, Feifei Xu, Hui Zhang, Wei Wang, Lei Ji, Yuehong Zheng
Software Mentions: 5
Published: over 5 years ago

10.1186/s13321-020-00420-z

COVER: conformational oversampling as data augmentation for molecules
Cited by: 19
Author(s): Jennifer Hemmerich, E. Asilar, Gerhard F. Ecker
Software Mentions: 5
Published: over 6 years ago

10.1093/gigascience/giy054

Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments
Cited by: 82
Author(s): Alexandre Almeida, Alex L. Mitchell, Aleksandra Tarkowska, Alex Bateman
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-017-03478-2

Diet-induced reconstruction of mucosal microbiota associated with alterations of epithelium lectin expression and regulation in the maintenance of rumen homeostasis
Cited by: 5
Author(s): Hong Shen, Zhongyan Lu, Zhihui Xu, Zongzhuan Shen
Software Mentions: 5
Published: about 9 years ago

10.1093/gigascience/giw008

Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade
Cited by: 43
Author(s): Daniel H. Chitwood, Wagner Campos Otoni
Software Mentions: 5
Published: over 9 years ago

10.3389/fonc.2019.00912

Construction of a Competitive Endogenous RNA Network and Identification of Potential Regulatory Axis in Gastric Cancer
Cited by: 21
Author(s): Hongda Pan, Chen Guo, Jianji Pan, Dongwei Guo, Shibo Song, Ye Zhou, Dazhi Xu
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0109229

Imitation, Genetic Lineages, and Time Influenced the Morphological Evolution of the Violin
Cited by: 28
Author(s): Daniel H. Chitwood
Software Mentions: 5
Published: over 11 years ago

10.1371/journal.pone.0230253

Comparing genome-scale DNA methylation and CNV marks between adult human cultured ITGA6+ testicular cells and seminomas to assess in vitro genomic stability
Cited by: 8
Author(s): Robert B. Struijk, Lambert C. J. Dorssers, Peter Henneman, Martin A. Rijlaarsdam, Andrea Venema, Aldo Jongejan, Marcel M.A.M. Mannens, Leendert H. J. Looijenga, Sjoerd Repping, Ans M.M. van Pelt
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.685980

Role of NRP1 in Bladder Cancer Pathogenesis and Progression
Cited by: 15
Author(s): Yun Dong, Weiming Ma, Zengliang Shi, Zhiguo Zhang, Jing Zhou, Yang Li, Shaoqi Zhang, Kun Pang, Bibo Li, Wen-da Zhang, Tao Fan, Guanghao Zhu, Xue Li, Rui Li, Ying Liu, Lin Hao, Conghui Han
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-71355-6

Combining genetic markers with stable isotopes in otoliths reveals complexity in the stock structure of Atlantic bluefin tuna (Thunnus thynnus)
Cited by: 16
Author(s): Deirdre Brophy, Naiara Rodríguez-Ezpeleta, Igaratza Fraile, Haritz Arrizabalaga
Software Mentions: 5
Published: almost 6 years ago

10.3390/jcm10173888

A Machine Learning Predictive Model for Post-Ureteroscopy Urosepsis Needing Intensive Care Unit Admission: A Case–Control YAU Endourology Study from Nine European Centres
Cited by: 16
Author(s): Amelia Pietropaolo, Robert Geraghty, Rajan Veeratterapillay, Alistair Rogers, Panagiotis Kallidonis, Luca Villa, Luca Boeri, Emanuele Montanari, Gökhan Atış, Esteban Emiliani, Tarık Emre Şener, Feras Al Jaafari, John Fitzpatrick, Matthew B.K. Shaw, Chris Harding, Bhaskar K. Somani
Software Mentions: 5
Published: almost 5 years ago

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