cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1002/cam4.3343

Identification of a novel prognostic DNA methylation signature for lung adenocarcinoma based on consensus clustering method
Cited by: 5
Author(s): Qidong Cai, Boxue He, Hui Xie, Pengfei Zhang, Ping Xiong, Yuqian Zhang, Zhenyu Zhao, Xiang Wang
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.9350

Effects of microbial evolution dominate those of experimental host-mediated indirect selection
Cited by: 19
Author(s): Jigyasa Arora, Margaret A. Mars Brisbin, Alexander S. Mikheyev
Software Mentions: 5
Published: about 6 years ago

10.3389/fpubh.2021.619581

Disease Burden and Attributable Risk Factors of Ovarian Cancer From 1990 to 2017: Findings From the Global Burden of Disease Study 2017
Cited by: 18
Author(s): Zhangjian Zhou, Xuan Wang, Xueting Ren, Linghui Zhou, Nan Wang, Huafeng Kang
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-018-20823-1

Homogenization and impoverishment of taxonomic and functional diversity of ants in Eucalyptus plantations
Cited by: 65
Author(s): Felipe Martello, Francesco de Bello, Maria Santina de Castro Morini, Rogério Rosa da Silva, Débora Rodriges de Souza-Campana, Milton Cézar Ribeiro, Carlos P. Carmona
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-020-61216-7

A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm
Cited by: 72
Author(s): Simone Scalabrin, Lucile Toniutti, Gabriele Di Gaspero, Davide Scaglione, Gabriele Magris, Michele Vidotto, Sara Pinosio, Frederica Cattonaro, Federica Magni, Irena Jurman, Mario Cerutti, F. S. Liverani, Luciano Navarini, Lorenzo Del Terra, Gloria Pellegrino, Manuela Rosanna Ruosi, Nicola Vitulo, Giorgio Valle, Alberto Pallavicini, G. Graziosi, Patricia E. Klein, Nolan Bentley, Seth C. Murray, William Solano, Amin Al Hakimi, Timothy Schilling, Christophe Montagnon, Michèle Morgante, Benoît Bertrand
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-021-07552-y

Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential
Cited by: 20
Author(s): Juanita Engelbrecht, Tuan A. Duong, S. Prabhu, Mohamed Seedat, Noëlani van den Berg
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0243265

Genomic variation and epidemiology of SARS-CoV-2 importation and early circulation in Israel
Cited by: 4
Author(s): Neta S. Zuckerman, Efrat Bucris, Yaron Drori, Oran Erster, Danit Sofer, Rakefet Pando, Ella Mendelson, Orna Mor, Michal Mandelboim
Software Mentions: 5
Published: over 5 years ago

10.1017/S003118201400050X

A longitudinal assessment of the serological response toTheileria parvaand other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya
Cited by: 17
Author(s): Henry K. Kiara, Amy Jennings, Barend M. deC. Bronsvoort, Ian Handel, Samuel M. Thumbi, Mary Mbole-Kariuki, Ilana Conradie van Wyk, Elizabeth J. Poole, Olivier Hanotte, Jacobus A.W. Coetzer, Mark Woolhouse, Philip G. Toye
Software Mentions: 5
Published: over 12 years ago

10.17305/bjbms.2020.5096

Bionformatics analysis reveals TSPAN1 as a candidate biomarker of progression and prognosis in pancreatic cancer
Cited by: 5
Author(s): Chenhui Ma, Zelong Cui, YiChao Wang, Lei Zhang, Jiaxin Wen, Huaibin Guo, Na Li, Wanxing Zhang
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-018-20607-7

Early Detection of Apathetic Phenotypes in Huntington’s Disease Knock-in Mice Using Open Source Tools
Cited by: 6
Author(s): Shawn Minnig, Robert M. Bragg, Hardeep S. Tiwana, Wes T. Solem, William S. Hovander, Eva-Mari S. Vik, Madeline Hamilton, Samuel R. W. Legg, Dominic D. Shuttleworth, Sydney R. Coffey, Jeffrey P. Cantle, Jeffrey B. Carroll
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2019.02587

Complementary DNA/RNA-Based Profiling: Characterization of Corrosive Microbial Communities and Their Functional Profiles in an Oil Production Facility
Cited by: 15
Author(s): Silvia J. Salgar-Chaparro, Laura L. Machuca
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12859-018-2252-9

npInv: accurate detection and genotyping of inversions using long read sub-alignment
Cited by: 26
Author(s): Haojing Shao, Devika Ganesamoorthy, Tânia Duarte, Minh Duc Cao, Clive Hoggart, Lachlan Coin
Software Mentions: 5
Published: about 8 years ago

10.1186/s12920-019-0596-2

Transcriptome analysis identified a novel 3-LncRNA regulatory network of transthyretin attenuating glucose induced hRECs dysfunction in diabetic retinopathy
Cited by: 14
Author(s): Jun Shao, Yunbin Zhang, Guangming Fan, Yu Xin, Yong Yao
Software Mentions: 5
Published: almost 7 years ago

10.1002/cam4.3481

Integrated genomic analysis identifies a genetic mutation model predicting response to immune checkpoint inhibitors in melanoma
Cited by: 22
Author(s): Junjie Jiang, Yongfeng Ding, Mengjie Wu, Yanyan Chen, Xiadong Lyu, Jun Lü, Haiyong Wang, Lisong Teng
Software Mentions: 5
Published: almost 6 years ago

10.1002/ajb2.1411

A common‐mesocosm experiment recreates sawgrass ( Cladium jamaicense ) phenotypes from Everglades marl prairies and peat marshes
Cited by: 3
Author(s): Jennifer H. Richards, Paulo C. Olivas
Software Mentions: 5
Published: over 6 years ago

10.1186/s13068-018-1215-8

The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973
Cited by: 42
Author(s): Xiaoming Tan, Songjun Hou, Kuo Song, Jens Georg, Stephan Klähn, Xuefeng Lü, Wolfgang R. Hess
Software Mentions: 5
Published: about 8 years ago

10.1128/mSystems.01306-20

Cultivating the Bacterial Microbiota of Populus Roots
Cited by: 12
Author(s): Dana L. Carper, David J. Weston, Aditya Barde, Collin M. Timm, Tse-Yuan S. Lu, Leah H. Burdick, Sara Jawdy, Dawn M. Klingeman, Michael S. Robeson, Allison M. Veach, Melissa Cregger, Udaya C. Kalluri, Christopher W. Schadt, Mircea Podar, Mitchel J. Doktycz, Dale A. Pelletier
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-19717-z

Annual shifts of flow regime alteration: new insights from the Chaishitan Reservoir in China
Cited by: 12
Author(s): Yongyong Zhang, Xiaoyan Zhai, Tongtiegang Zhao
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2017.00526

Mosquito Microbiome Dynamics, a Background for Prevalence and Seasonality of West Nile Virus
Cited by: 83
Author(s): Eva Nováková, Douglas C. Woodhams, Sonia M. Rodríguez‐Ruano, Robert M. Brucker, Jonathan W. Leff, Amin Maharaj, Amir Almasi‐Hashiani, Rob Knight, James A. Scott
Software Mentions: 5
Published: over 9 years ago

10.1186/s42523-021-00074-8

Host reproductive cycle influences the pouch microbiota of wild southern hairy-nosed wombats (Lasiorhinus latifrons)
Cited by: 10
Author(s): Sesilje Weiss, David A. Taggart, Ian Smith, Kristofer M. Helgen, Raphael Eisenhofer
Software Mentions: 5
Published: over 5 years ago

10.15252/emmm.202113953

Intrathecal activation of CD8 + memory T cells in IgG4‐related disease of the brain parenchyma
Cited by: 5
Author(s): Mirco Friedrich, Niklas Kehl, Niko Engelke, Josephine Kraus, Katharina A.M. Lindner, Philipp Münch, Iris Mildenberger, Christoph Groden, Achim Gass, Nima Etminan, Marc Fatar, Andreas von Deimling, David Reuß, Michael Platten, Lukas Bunse
Software Mentions: 5
Published: about 5 years ago

10.1002/cam4.2312

Characterization of transcriptome profile and clinical features of a novel immunotherapy target CD204 in diffuse glioma
Cited by: 19
Author(s): Yanggang Yuan, Qitai Zhao, Songfeng Zhao, Penghua Zhang, Haibiao Zhao, Zeyun Li, Yue Du, Xin Tian, Jingli Lü
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0200557

Positive association between moderate altitude and chronic lower respiratory disease mortality in United States counties
Cited by: 8
Author(s): Jae Cheol Hwang, Miso Jang, Namkug Kim, Seunghyun Choi, Yeon‐Mok Oh, Joon Beom Seo
Software Mentions: 5
Published: about 8 years ago

10.1002/cam4.3959

IBSP, a potential recurrence biomarker, promotes the progression of colorectal cancer via Fyn/β‐catenin signaling pathway
Cited by: 8
Author(s): Cheng Yan, Ying Qin, Mengmeng Dai, Liping Liu, Yicheng Ni, Qiao Sun, Lulu Li, Yaoyao Zhou, Cheng Qiu, Yuyang Jiang
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2021.722206

Gut Bacterial Characteristics of Patients With Type 2 Diabetes Mellitus and the Application Potential
Cited by: 35
Author(s): Yanyan Que, Man Cao, Jianquan He, Qiang Zhang, Qiongyun Chen, Changsheng Yan, Aiqiang Lin, Luxi Yang, Zezhen Wu, Dan Zhu, Fengwu Chen, Zhangran Chen, Chuanxing Xiao, Kaijian Hou, Bangzhou Zhang
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0216758

An integrated insight into the response of bacterial communities to anthropogenic contaminants in a river: A case study of the Wonderfonteinspruit catchment area, South Africa
Cited by: 20
Author(s): Karen Jordaan, A. Comeau, Damase P. Khasa, Cornelius Carlos Bezuidenhout
Software Mentions: 5
Published: over 7 years ago

10.7554/eLife.62850

Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networks
Cited by: 24
Author(s): Beryl M. Jones, Vikyath D. Rao, Tim Gernat, Tobias Jagla, Amy Cash Ahmed, Rubin Be, Troy J. Comi, Shounak Bhogale, Syed Sameed Husain, Charles Blatti, Martin Middendorf, Saurabh Sinha, Sriram Chandrasekaran, Gene E. Robinson
Software Mentions: 5
Published: over 5 years ago

10.1007/s00436-020-06753-w

Sex interacts with age-dependent change in the abundance of lice-infesting Amur Falcons (Falco amurensis)
Cited by: 1
Author(s): Imre Sándor Piross, Manju Siliwal, R. Suresh Kumar, Péter Palatitz, Szabolcs Solt, Péter Borbáth, Nóra Vili, Nóra M. Magonyi, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: about 6 years ago

10.1101/2020.09.16.20196154

SARS-CoV-2 antibody signatures robustly predict diverse antiviral functions relevant for convalescent plasma therapy
Cited by: 20
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13068-021-01915-z

Physiological and transcriptional response to drought stress among bioenergy grass Miscanthus species
Cited by: 10
Author(s): Jose J De Vega, Abel Teshome, Manfred Klaas, Jim Grant, John Finnan, Susanne Barth
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-017-17408-9

Model-based genome-wide determination of RNA chain elongation rates in Escherichia coli
Cited by: 7
Author(s): Peter Großmann, Anja Lück, Christoph Kaleta
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-017-16739-x

Scene grammar shapes the way we interact with objects, strengthens memories, and speeds search
Cited by: 59
Author(s): Dejan Draschkow, Melissa L.-H. Võ
Software Mentions: 5
Published: over 8 years ago

10.1186/s12864-019-5504-9

Streamlined computational pipeline for genetic background characterization of genetically engineered mice based on next generation sequencing data
Cited by: 5
Author(s): Carlos Farkas, Francisco Fuentes-Villalobos, Boris Rebolledo‐Jaramillo, Fernando Benavides, Ariel F. Castro, Roxana Pincheira
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-017-15629-6

Innate Cell-Mediated Cytotoxic Activity of European Sea Bass Leucocytes Against Nodavirus-Infected Cells: A Functional and RNA-seq Study
Cited by: 30
Author(s): Elena Chaves-Pozo, Yulema Valero, Anna Esteve‐Codina, Jèssica Gómez-Garrido, Marc Dabad, Tyler Alioto, José Meseguer, M. Ángeles Esteban, Alberto Cuesta
Software Mentions: 5
Published: almost 9 years ago

10.1007/s00436-020-06634-2

Sex-dependent changes in the louse abundance of red-footed falcons (Falco vespertinus)
Cited by: 4
Author(s): Imre Sándor Piross, Szablocs Solt, Éva Horváth, László Kotymán, Péter Palatitz, Péter Bertók, Krisztián Szabó, Nóra Vili, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: over 6 years ago

10.1155/2021/3603030

BOP1 Used as a Novel Prognostic Marker and Correlated with Tumor Microenvironment in Pan-Cancer
Cited by: 2
Author(s): Wei Li, Peipei Song, Mengyuan Zhao, Lina Gao, Jianqin Xie, Chongge You
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-63274-3

Epidemiological and aetiological characteristics of hand, foot, and mouth disease in Sichuan Province, China, 2011–2017
Cited by: 15
Author(s): Di Peng, Yue Ma, Yaqiong Liu, Qiang Lv, Fei Yin
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-021-04161-0

BoardION: real-time monitoring of Oxford Nanopore sequencing instruments
Cited by: 4
Author(s): Aimeric Bruno, Jean‐Marc Aury, Stéfan Engelen
Software Mentions: 5
Published: over 5 years ago

10.2196/26494

Patient Monitoring Alarms of an Intensive Care Unit: Observational Study with DIY Instructions (Preprint)
Cited by: 13
Author(s): Akira-Sebastian Poncette, Maximilian Markus Wunderlich, Claudia Spies, Patrick Heeren, Gerald Vorderwülbecke, Eduardo Salgado, Marc Kastrup, Markus A. Feufel, Felix Balzer
Software Mentions: 5
Published: over 5 years ago

10.1101/2020.12.05.20244442

Seroconversion stages COVID19 into distinct pathophysiological states
Cited by: 3
Author(s): Matthew D. Galbraith, Kohl T Kinning, Kelly D. Sullivan, Ryan M. Baxter, Paula Araya, Kimberly R. Jordan, Seth Russell, Keith P Smith, Ross E Granrath, Jessica Shaw, Monika Dzieciątkowska, Tusharkanti Ghosh, Andrew A. Monte, Angelo D’Alessandro, Kirk C. Hansen, Tellen D. Bennett, Elena W.Y. Hsieh, Joaquín M. Espinosa
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0242879

Validation of models using basic parameters to differentiate intestinal tuberculosis from Crohn’s disease: A multicenter study from Asia
Cited by: 9
Author(s): Julajak Limsrivilai, Choon Kin Lee, Piyapan Prueksapanich, Kamin Harinwan, Asawin Sudcharoen, Natcha Cheewasereechon, Satimai Aniwan, Pimsiri Sripongpan, Panu Wetwittayakhlang, Ananya Pongpaibul, Anapat Sanpavat, Nonthalee Pausawasdi, Phunchai Charatcharoenwitthaya, Peter Higgins, Siew C. Ng
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.5887

Phenotypic plasticity, but not adaptive tracking, underlies seasonal variation in post‐cold hardening freeze tolerance ofDrosophila melanogaster
Cited by: 9
Author(s): Helen M. Stone, Priscilla A. Erickson, Alan O. Bergland
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0223616

Increased fecundity of Aphis fabae on Vicia faba plants following seed or leaf inoculation with the entomopathogenic fungus Beauveria bassiana
Cited by: 15
Author(s): Rasmus Emil Jensen, Annie Enkegaard, Tove Steenberg
Software Mentions: 5
Published: almost 7 years ago

10.3389/fimmu.2019.03023

Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer
Cited by: 43
Author(s): Neal C Ramchander, Neil Ryan, Thomas D. J. Walker, Lauren J. Harries, James M. Bolton, Tjalling Bosse, D. Gareth Evans, Emma J. Crosbie
Software Mentions: 5
Published: over 6 years ago

10.1016/j.lmot.2018.07.003

A re-examination of responding on ratio and regulated-probability interval schedules
Cited by: 6
Author(s): Omar David Pérez, Michael R. F. Aitken, Amy Milton, Anthony Dickinson
Software Mentions: 5
Published: almost 8 years ago

10.1042/BSR20190729

The prognostic value of lncRNA SNHG4 and its potential mechanism in liver cancer
Cited by: 18
Author(s): Yan Jiao, Yanqing Li, Bin Jia, Qingmin Chen, Guoqiang Pan, Hua Fang, Yahui Liu
Software Mentions: 5
Published: over 6 years ago

10.1002/acn3.50873

Agreement of amyloid PET and CSF biomarkers for Alzheimer's disease on Lumipulse
Cited by: 89
Author(s): Daniel Alcolea, Jordi Malé i Pegueroles, Laia Muñoz, Valle Camacho, Diego Alfonso López-Mora, Alejandro Fernández-León, Nathalie Le Bastard, Els Huyck, Alícia Nadal, Verónica Olmedo, Frederic Sampedro, Víctor Montal, Eduard Vilaplana, Jordi Clarimón, Rafael Blesa, Juan Fortea, Alberto Lleó
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0169115

Field-Evolved Resistance in Corn Earworm to Cry Proteins Expressed by Transgenic Sweet Corn
Cited by: 133
Author(s): Galen P. Dively, P. Dilip Venugopal, Chad Finkenbinder
Software Mentions: 5
Published: over 9 years ago

10.1038/s41598-017-13359-3

Long-term passive acoustic recordings track the changing distribution of North Atlantic right whales (Eubalaena glacialis) from 2004 to 2014
Cited by: 111
Author(s): G. E. Davis, Mark F. Baumgartner, Julianne Bonnell, Joel T. Bell, Catherine L. Berchok, Jacqueline Bort Thornton, Solange Brault, Gary Buchanan, Russell A. Charif, Danielle Cholewiak, Christopher W. Clark, Peter J. Corkeron, Julien Delarue, Kathleen M. Dudzinski, Leila T. Hatch, John A. Hildebrand, Lynne Hodge, Holger Klinck, Scott D. Kraus, Bruce Martin, David K. Mellinger, Hilary Moors‐Murphy, Sharon L. Nieukirk, Douglas P. Nowacek, Susan E. Parks, Andrew J. Read, Aaron N. Rice, Denise Risch, Ana Širović, Melissa S. Soldevilla, Kate Stafford, Joy E. Stanistreet, Erin Summers, Sean Todd, Ann Warde, Sofie M. Van Parijs
Software Mentions: 5
Published: almost 9 years ago

10.1155/2021/6641838

Analysis of Molecular Mechanism of Erxian Decoction in Treating Osteoporosis Based on Formula Optimization Model
Cited by: 22
Author(s): Lang Yang, Liuyi Fan, Kexin Wang, Yu-peng Chen, Liuqin Liang, Xuemei Qin, Aiping Lü, Peng Cao, Bin Yu, Daogang Guan, Junxiang Peng
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0180969

Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study
Cited by: 30
Author(s): Peggy S. Lai, Joseph G. Allen, Diane S. Hutchinson, Nadim J. Ajami, Joseph F. Petrosino, Thomas Winters, Christopher Hug, Gary R. Wartenberg, Jose Vallarino, David C. Christiani
Software Mentions: 5
Published: about 9 years ago

10.7717/peerj.11342

Centromere protein N may be a novel malignant prognostic biomarker for hepatocellular carcinoma
Cited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Zhewen Zheng, Fengxia Chen, Ningning Yang, Youwen Zhou
Software Mentions: 5
Published: over 5 years ago

10.1093/aobpla/plx010

Antibiotics impact plant traits, even at small concentrations
Cited by: 69
Author(s): Vanessa Minden, Andrea Deloy, Anna Martina Volkert, Sara D. Leonhardt, Gesine Pufal
Software Mentions: 5
Published: over 9 years ago

10.1186/s12864-019-5892-x

Carriage of Shiga toxin phage profoundly affects Escherichia coli gene expression and carbon source utilization
Cited by: 25
Author(s): Petya Berger, Ivan U. Kouzel, Michael Berger, Nadja Haarmann, Ulrich Dobrindt, Gerald B. Koudelka, Alexander Mellmann
Software Mentions: 5
Published: about 7 years ago

10.3389/fpsyg.2018.01343

On the Dependability and Feasibility of Layperson Ratings of Divergent Thinking
Cited by: 26
Author(s): Richard W. Hass, Marisa Rivera, Paul J. Silvia
Software Mentions: 5
Published: about 8 years ago

10.1186/s13100-019-0190-3

Stowaway miniature inverted repeat transposable elements are important agents driving recent genomic diversity in wild and cultivated carrot
Cited by: 6
Author(s): Alicja Macko-Podgórni, Katarzyna Stelmach, Kornelia Kwolek, Dariusz Grzebelus
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12859-021-04050-6

Dualmarker: a flexible toolset for exploratory analysis of combinatorial dual biomarkers for clinical efficacy
Cited by: 4
Author(s): Xiaopeng Ma, Ruiqi Huang, Xikun Wu, Pei Zhang
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-81332-2

Low serum total CO2 and its association with mortality in patients being followed up in the nephrology outpatients clinic
Cited by: 0
Author(s): Kyung Don Yoo, Jung Nam An, Yong Chul Kim, Jeonghwan Lee, Kwon Wook Joo, Yun Kyu Oh, Yon Su Kim, Chun Soo Lim, Sohee Oh, Jung Pyo Lee
Software Mentions: 5
Published: over 5 years ago

10.1186/s40104-020-00542-2

Linkage between the intestinal microbiota and residual feed intake in broiler chickens
Cited by: 26
Author(s): Jing Liu, Sydney Stewart, Kelsy Robinson, Qing Yang, Wentao Lyu, Melanie A. Whitmore, Guolong Zhang
Software Mentions: 5
Published: over 5 years ago

10.3945/ajcn.116.139980

What’s normal? Oligosaccharide concentrations and profiles in milk produced by healthy women vary geographically ,
Cited by: 268
Author(s): Michelle K. McGuire, Courtney L. Meehan, Mark A. McGuire, Janet E. Williams, James E. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Linda J. Kvist, Gloria E. Otoo, Sarah L Brooker, William J. Price, Bahman Shafii, Caitlyn Placek, Kimberly A. Lackey, Bianca Robertson, Susana Manzano, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode
Software Mentions: 5
Published: over 9 years ago

10.1186/s13100-020-00224-w

Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains
Cited by: 14
Author(s): Mahoko Takahashi Ueda, Kirill Kryukov, Satomi Mitsuhashi, Hiroaki Mitsuhashi, Tadashi Imanishi, So Nakagawa
Software Mentions: 5
Published: almost 6 years ago

10.2196/27633

Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
Cited by: 716
Author(s): András Lánczky, Balázs Győrffy
Software Mentions: 5
Published: about 5 years ago

10.7554/eLife.58659

A human ESC-based screen identifies a role for the translated lncRNA LINC00261 in pancreatic endocrine differentiation
Cited by: 22
Author(s): Bjoern Gaertner, Sebastiaan van Heesch, Valentin Schneider-Lunitz, Jana Felicitas Schulz, Franziska Witte, Susanne Blachut, Steven Nguyen, Richard L. Wong, Ileana Matta, Norbert Hübner
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.4086

Canopy bird assemblages are less influenced by habitat age and isolation than understory bird assemblages in Neotropical secondary forest
Cited by: 20
Author(s): Tom Bradfer‐Lawrence, Nick Gardner, Daisy H. Dent
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-020-64393-7

Development but not diet alters microbial communities in the Neotropical arboreal trap jaw ant Daceton armigerum: an exploratory study
Cited by: 13
Author(s): Manuela de Oliveira Ramalho, Christophe Duplais, Jérôme Orivel, Alain Déjean, Joshua C. Gibson, Andrew V. Suarez, Corrie S. Moreau
Software Mentions: 5
Published: over 6 years ago

10.26508/lsa.202101036

Hepatitis B virus compartmentalization and single-cell differentiation in hepatocellular carcinoma
Cited by: 2
Author(s): Frank Jühling, Antonio Saviano, Clara Ponsolles, Laura Heydmann, Émilie Crouchet, Sarah Durand, Houssein El Saghire, Emanuele Felli, Véronique Lindner, Patrick Pessaux, Nathalie Pochet, Catherine Schuster, Éloi R. Verrier, Thomas F. Baumert
Software Mentions: 5
Published: about 5 years ago

10.1155/2021/5574150

Identifying Prognostic Significance of RCL1 and Four-Gene Signature as Novel Potential Biomarkers in HCC Patients
Cited by: 5
Author(s): Jun Liu, Shan-Qiang Zhang, Jing Chen, Zhibin Li, Qingming Lu, Yu-Shuai Han, Wenjie Dai, Chengyu Xie, Jicheng Li
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-021-07471-y

Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history
Cited by: 8
Author(s): Ariane Bize, Cédric Midoux, Mahendra Mariadassou, Sophie Schbath, Patrick Forterre, Violette Da Cunha
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-021-04106-7

EzMAP: Easy Microbiome Analysis Platform
Cited by: 0
Author(s): Gnanendra Shanmugam, Song Hee Lee, Junhyun Jeon
Software Mentions: 5
Published: over 5 years ago

10.3390/cells10030693

Voluntary Wheel Running Did Not Alter Gene Expression in 5xfad Mice, but in Wild-Type Animals Exclusively after One-Day of Physical Activity
Cited by: 2
Author(s): Anna Wierczeiko, Lena Gammel, Konstantin Radyushkin, Vu Thu Thuy Nguyen, Hristo Todorov, Susanne Gerber, Kristina Endres
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-017-10576-8

Plant litter dynamics in the forest-stream interface: precipitation is a major control across tropical biomes
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Author(s): Alan M. Tonin, José F. Gonçalves, Paulino Bambi, Sheyla Regina Marques Couceiro, Lorrane A. M. Feitoza, Lucas Eugênio Fontana, Neusa Hamada, Luiz Ubiratan Hepp, Vânia G. Lezan-Kowalczuk, Gustavo Figueiredo Marques Leite, Aurea Luiza Lemes-Silva, Leonardo Kleba Lisboa, Rafael Chaves Loureiro, Renato Tavares Martins, Adriana O. Medeiros, Paula B. Morais, Yara Moretto, Patrícia C. A. Oliveria, Evelyn B. Pereira, Lidiane P. Ferreira, Javier Jiménez Pérez, Maurício Mello Petrucio, Deusiano Florêncio dos Reis, Renan de Souza Rezende, Nádia Roque, Luiz E. P. Santos, Ana Emília Siegloch, Gabriela Tonello, Luz Boyero
Software Mentions: 5
Published: almost 9 years ago

10.1016/j.isci.2021.103021

Salmonella enterica from a soldier from the 1652 siege of Barcelona (Spain) supports historical transatlantic epidemic contacts
Cited by: 2
Author(s): Toni de-Dios, Pablo Carrión, Ïñigo Olalde, Laia Llovera Nadal, Esther Lizano, Dídac Pàmies, Tomàs Marqués-Bonet, François Balloux, Lucy van Dorp, Carles Lalueza‐Fox
Software Mentions: 5
Published: almost 5 years ago

10.1002/lno.10967

Fewer blue lakes and more murky lakes across the continental U.S.: Implications for planktonic food webs
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Author(s): Dina M. Leech, Amina I. Pollard, Stephanie Labou, Stephanie E. Hampton
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0239480

Horizontal and vertical movements of starry smooth-hound Mustelus asterias in the northeast Atlantic
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Author(s): Christopher A. Griffiths, Serena Wright, Joana F. Silva, Jim R. Ellis, David Righton, Sophy R. McCully Phillips
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12944-021-01543-4

Determinants of the postprandial triglyceride response to a high-fat meal in healthy overweight and obese adults
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Author(s): Stephanie Wilson, Adam P. Maes, Carl J. Yeoman, Seth T. Walk, Mary P. Miles
Software Mentions: 5
Published: almost 5 years ago

10.3390/microorganisms9071427

How Do Polymer Coatings Affect the Growth and Bacterial Population of a Biofilm Formed by Total Human Salivary Bacteria?—A Study by 16S-RNA Sequencing
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Author(s): Ali Al‐Ahmad, Kira Wollensak, Sibylle J. Rau, Diana Lorena Guevara Solarte, Stefan Paschke, Karen Lienkamp, Ori Staszewski
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0188772

Comparative cell cycle transcriptomics reveals synchronization of developmental transcription factor networks in cancer cells
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Author(s): Johan Boström, Zuzana Šrámková, Alena Salašová, Helena A.D. Johard, Diana Mahdessian, Radek Fedr, Carolyn Marks, Jiřina Medalová, Karel Souček, Emma Lundberg, Sten Linnarsson, Vı́tězslav Bryja, Petra Sekyrová, Mikael Altun, Michael Andäng
Software Mentions: 5
Published: over 8 years ago

10.1155/2021/5553811

Identification of Potential Biomarkers Associated with Acute Myocardial Infarction by Weighted Gene Coexpression Network Analysis
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Author(s): Yan Wang, Xiangyang Zhang, Min Duan, Chenguang Zhang, Ke Wang, Lili Feng, Linlin Song, Sheng Xi Wu, Xuyan Chen
Software Mentions: 5
Published: about 5 years ago

10.1093/gigascience/giy054

Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments
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Author(s): Alexandre Almeida, Alex L. Mitchell, Aleksandra Tarkowska, Alex Bateman
Software Mentions: 5
Published: over 8 years ago

10.1016/j.isci.2021.103092

The gut microbiota instructs the hepatic endothelial cell transcriptome
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Author(s): Henning Formes, Joana P. Bernardes, Amrit Mann, Franziska Bayer, Giulia Pontarollo, Klytaimnistra Kiouptsi, Katrin Schäfer, Sebastian Attig, Teodora Nikolova, Thomas G. Hofmann, Jörn M. Schattenberg, Hristo Todorov, Susanne Gerber, Philip Rosenstiel, Tobias Bopp, Felix Sommer, Carsten Reinhardt
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0210795

Effects of moderate thermal anomalies on Acropora corals around Sesoko Island, Okinawa
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Author(s): Tanya Singh, Mariko Iijima, Ko Yasumoto, Kazuhiko Sakai
Software Mentions: 5
Published: over 7 years ago

10.1186/s12868-021-00635-2

Early postnatal irradiation‐induced age‐dependent changes in adult mouse brain: MRI based characterization
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Author(s): Bo Ren, Isaac Huen, Zi Jun Wu, Hong Wang, Meng Yun Duan, Ilonka Guenther, Kritika Prakash, Feng Ru Tang
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-021-04154-z

Tamock: simulation of habitat-specific benchmark data in metagenomics
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Author(s): Samuel M. Gerner, Alexandra B. Graf, Thomas Rattei
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.54385

Polyploidy in the adult Drosophila brain
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Author(s): Shyama Nandakumar, Olga Grushko, Laura Buttitta
Software Mentions: 5
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10.1038/s41597-021-00896-w

Generation of a mouse SWATH-MS spectral library to quantify 10148 proteins involved in cell reprogramming
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Author(s): Uxue Ulanga, Matthew R. Russell, Stefano Patassini, Julie Brazzatti, Ciaren Graham, Anthony D. Whetton, R.L. Graham
Software Mentions: 5
Published: over 5 years ago

10.1111/acel.13331

A novel p53 regulator, C16ORF72/TAPR1, buffers against telomerase inhibition
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Author(s): Yahya Benslimane, María Sánchez-Osuna, Jasmin Coulombe-Huntington, Thierry Bertomeu, Danielle Henry, Caroline Huard, Éric Bonneil, Pierre Thibault, Mike Tyers, Lea Harrington
Software Mentions: 5
Published: over 5 years ago

10.1186/s12936-019-2744-8

Effects of anthropogenic landscape changes on the abundance and acrodendrophily of Anopheles (Kerteszia) cruzii, the main vector of malaria parasites in the Atlantic Forest in Brazil
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Author(s): Antônio Ralph Medeiros‐Sousa, Rafael de Oliveira Christe, Ana Maria Ribeiro de Castro Duarte, Luís Filipe Mucci, Walter Ceretti-Júnior, Mauro Toledo Marrelli
Software Mentions: 5
Published: over 7 years ago

10.1111/acel.13441

Youthful and age‐related matreotypes predict drugs promoting longevity
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Author(s): Cyril Statzer, Elisabeth Jongsma, Sean X Liu, Alexander Dakhovnik, Franziska Wandrey, Pavlo Mozharovskyi, Fred Zülli, Collin Y. Ewald
Software Mentions: 5
Published: about 5 years ago

10.1186/s13613-019-0600-1

Prediction of mortality in adult patients with sepsis using six biomarkers: a systematic review and meta-analysis
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Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-021-81538-4

Clinical implications of intrinsic molecular subtypes of breast cancer for sentinel node status
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Author(s): Maria Rossing, Christina Bligaard Pedersen, Tove Filtenborg Tvedskov, Ilse Vejborg, Maj Lis Møller Talman, Lars Rønn Olsen, Niels Kroman, Finn Cilius Nielsen, Maj Britt Jensen, Bent Ejlertsen
Software Mentions: 5
Published: over 5 years ago

10.1155/2016/8409183

Azocasein Substrate for Determination of Proteolytic Activity: Reexamining a Traditional Method Using Bromelain Samples
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Author(s): D. Coelho, Thais Peron Saturnino, Fernanda Freitas Fernandes, Priscila Gava Mazzola, Edgar Silveira, Elias Basile Tambourgi
Software Mentions: 5
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10.1186/1471-2105-12-104

PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
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Author(s): Botond Sipos, Tim Massingham, Gregory E. Jordan, Nick Goldman
Software Mentions: 5
Published: over 15 years ago

10.1038/s41597-020-0352-7

Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
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Author(s): Won-Hee Kang, Young Mi Sim, Namjin Koo, Jae Do Nam, Junesung Lee, Nayoung Kim, Hakgi Jang, Yongmin Kim, Seon-In Yeom
Software Mentions: 5
Published: over 6 years ago

10.1111/acel.13230

COVID‐19 is an emergent disease of aging
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Software Mentions: 5
Published: almost 6 years ago

10.1007/s13280-020-01360-6

Living with floating vegetation invasions
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Author(s): Fritz Kleinschroth, R. Scott Winton, Elisa Calamita, Fabian Niggemann, Martina Botter, Bernhard Wehrli, Jaboury Ghazoul
Software Mentions: 5
Published: about 6 years ago

10.1186/s12936-021-03677-3

Fitness characteristics of the malaria vector Anopheles funestus during an attempted laboratory colonization
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Author(s): Halfan S. Ngowo, Emmanuel E. Hape, Jason Matthiopoulos, Heather M. Ferguson, Fredros O. Okumu
Software Mentions: 5
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10.18632/aging.202739

Oral administration of Akkermansia muciniphila elevates systemic antiaging and anticancer metabolites
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Author(s): Claudia Grajeda‐Iglesias, Sylvère Durand, Romain Daillère, Kristina Iribarren, Fabien Lemaître, Lisa Derosa, Fanny Aprahamian, Noélie Bossut, Nitharsshini Nirmalathasan, Frank Madeo, Laurence Zitvogel, Guido Kroemer
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2020.550769

HDAC3 Mediates the Inflammatory Response and LPS Tolerance in Human Monocytes and Macrophages
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Author(s): Mohammed Ghiboub, Jing Zhao, Andrew Y. Li Yim, Ronald Schilderink, Caroline Verseijden, Patricia H. P. van Hamersveld, José Duarte, Theodorus B. M. Hakvoort, Iris Admiraal, Nicola Harker, David F. Tough, Peter Henneman, Menno P.J. de Winther, Wouter J. de Jonge
Software Mentions: 5
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10.1371/journal.pone.0255304

Coral reefs in the Gilbert Islands of Kiribati: Resistance, resilience, and recovery after more than a decade of multiple stressors
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Author(s): Sara E. Cannon, Erietera Aram, Toaea Beiateuea, A. Kiareti, Max Peter, Simon D. Donner
Software Mentions: 5
Published: about 5 years ago

10.1186/s12936-018-2612-y

Cryogenically preserved RBCs support gametocytogenesis of Plasmodium falciparum in vitro and gametogenesis in mosquitoes
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Author(s): Ashutosh K. Pathak, Justine C. Shiau, Matthew B. Thomas, Courtney C. Murdock
Software Mentions: 5
Published: over 7 years ago

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