cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1155/2021/3603030

BOP1 Used as a Novel Prognostic Marker and Correlated with Tumor Microenvironment in Pan-Cancer
Cited by: 2
Author(s): Wei Li, Peipei Song, Mengyuan Zhao, Lina Gao, Jianqin Xie, Chongge You
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12870-021-03151-x

Derived woodiness and annual habit evolved in African umbellifers as alternative solutions for coping with drought
Cited by: 2
Author(s): Kamil E. Frankiewicz, Łukasz Banasiak, Alexei A. Oskolski, A.R. Magee, Mohammad Alsarraf, Paulina Trzeciak, Krzysztof Spalik
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2019.01486

Soil Salinity and pH Drive Soil Bacterial Community Composition and Diversity Along a Lateritic Slope in the Avon River Critical Zone Observatory, Western Australia
Cited by: 39
Author(s): Flora Jane Mary O'Brien, Maya Almaraz, Melissa A. Foster, A. F. Hill, David P. Huber, Elizabeth King, Harry Langford, Mary-Anne Lowe, Bede S. Mickan, Valerie S. Miller, Oliver Moore, Falko Mathes, Deirdre Gleeson, Matthias Leopold
Software Mentions: 5
Published: about 7 years ago

10.3389/fgene.2020.00863

N6-Methyladenosine RNA Methylation Regulators Have Clinical Prognostic Values in Hepatocellular Carcinoma
Cited by: 4
Author(s): Wei Liu, Cuiqing Zhong, Deguan Lv, Mengjie Tang, Feng Xie
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2021.703693

Identification of an Intestinal Microbiota Signature Associated With the Severity of Necrotic Enteritis
Cited by: 14
Author(s): Qing Yang, Jing Liu, Xiaofan Wang, Kelsy Robinson, Melanie A. Whitmore, Sydney Stewart, Jiangchao Zhao, Guolong Zhang
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2021.661410

Short-Term Effect in Soil Microbial Community of Two Strategies of Recovering Degraded Area in Brazilian Savanna: A Pilot Case Study
Cited by: 1
Author(s): Priscila Jane Romano Gonçalves Selari, Luiz Ricardo Olchanheski, Almir José Ferreira, Tiago do Prado Paim, Guido Calgaro, Flávio Lopes Claudio, Estênio Moreira Alves, Darliane de Castro Santos, Welington Luiz Araújo, Fabiano Guimarães Silva
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2020.595361

Identification of Hub Prognosis-Associated Oxidative Stress Genes in Pancreatic Cancer Using Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Xin Qiu, Qin-Han Hou, Qiuyue Shi, Haixing Jiang, Shanyu Qin
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.653880

Interactions Between Tsetse Endosymbionts and Glossina pallidipes Salivary Gland Hypertrophy Virus in Glossina Hosts
Cited by: 4
Author(s): Güler Demirbaş-Uzel, Antonios A. Augustinos, Vangelis Doudoumis, Andrew G. Parker, George Tsiamis, Kostas Bourtzis, Adly M. M. Abd-Alla
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.49577

The Mars1 kinase confers photoprotection through signaling in the chloroplast unfolded protein response
Cited by: 40
Author(s): Karina Perlaza, Hannah Toutkoushian, Morgane Boone, Mable Lam, Masakazu Iwai, Martin C. Jonikas, Peter Walter, Silvia Ramundo
Software Mentions: 5
Published: almost 7 years ago

10.3389/fgene.2020.602542

Integrated Analysis of lncRNA-Mediated ceRNA Network Reveals a Prognostic Signature for Hepatocellular Carcinoma
Cited by: 7
Author(s): Jian-Rong Sun, Chen-Fan Kong, Kunmin Xiao, Jia-Lu Yang, Xiang-Ke Qu, Jinghui Sun
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.665858

Multi-Omics Approach Reveals the Potential Core Vaccine Targets for the Emerging Foodborne Pathogen Campylobacter jejuni
Cited by: 6
Author(s): Hai‐Yan Cao, Hanxiao Xu, Ning Cai, Xiang Li, Ren Qiu-fang, Tiantian Zhang, Yusen Zhang, Rui Gao
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2019.01491

Genomic Characterization of Jumbo Salmonella Phages That Effectively Target United Kingdom Pig-Associated Salmonella Serotypes
Cited by: 26
Author(s): Anisha M. Thanki, Nathan Brown, Andrew Millard, Martha R. J. Clokie
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2021.569020

Distribution of Hydrogen-Producing Bacteria in Tibetan Hot Springs, China
Cited by: 3
Author(s): Li Ma, Geng Wu, Jian Yang, Liuqin Huang, Dorji Phurbu, Wenjun Li, Hongchen Jiang
Software Mentions: 5
Published: about 5 years ago

10.3390/metabo10050212

An NMR-Based Approach to Identify Urinary Metabolites Associated with Acute Physical Exercise and Cardiorespiratory Fitness in Healthy Humans—Results of the KarMeN Study
Cited by: 10
Author(s): Sina Kistner, M Rist, Maik Döring, Claudia Dörr, Rainer Neumann, Sascha Härtel, Achim Bub
Software Mentions: 5
Published: over 6 years ago

10.3389/fvets.2018.00122

Periparturient Behavior and Physiology: Further Insight Into the Farrowing Process for Primiparous and Multiparous Sows
Cited by: 20
Author(s): Sarah H. Ison, Suzanne Jarvis, Hall Sa, Cheryl Ashworth, Kenny Rutherford
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2018.02227

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats
Cited by: 19
Author(s): Leticia Abecia, Gonzalo Martínez Fernández, Kate Waddams, A. I. Martin-García, Eric Pinloche, Christopher J. Creevey, Stuart E. Denman, C. J. Newbold, D. R. Yáñez-Ruíz
Software Mentions: 5
Published: almost 8 years ago

10.7554/eLife.54880

Transient intracellular acidification regulates the core transcriptional heat shock response
Cited by: 45
Author(s): Catherine G. Triandafillou, Christopher D. Katanski, Aaron R. Dinner, D. Allan Drummond
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2018.00922

Enrichment of Bacteria From Eastern Mediterranean Sea Involved in Lignin Degradation via the Phenylacetyl-CoA Pathway
Cited by: 20
Author(s): Hyun-Joo Woo, Terry C. Hazen
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0109229

Imitation, Genetic Lineages, and Time Influenced the Morphological Evolution of the Violin
Cited by: 28
Author(s): Daniel H. Chitwood
Software Mentions: 5
Published: almost 12 years ago

10.1038/s41598-021-90380-7

Gut microbiota composition in health-care facility-and community-onset diarrheic patients with Clostridioides difficile infection
Cited by: 6
Author(s): Giovanny Herrera, Laura Vega, Manuel A. Patarroyo, Juan David Ramírez, Marina Muñoz
Software Mentions: 5
Published: over 5 years ago

10.18632/oncotarget.11772

Hypoxia-responsive miR-210 promotes self-renewal capacity of colon tumor-initiating cells by repressing ISCU and by inducing lactate production
Cited by: 47
Author(s): Pit Ullmann, Komal Qureshi-Baig, Fabien Rodriguez, Aurélien Ginolhac, Yannic Nonnenmacher, Dominik Ternes, Jil Weiler, Karoline Gäbler, Christelle Bahlawane, Karsten Hiller, Serge Haan, Elisabeth Letellier
Software Mentions: 5
Published: almost 10 years ago

10.1038/s41598-021-89148-w

Dilute pilocarpine test for diagnosis of Adie’s tonic pupil
Cited by: 3
Author(s): Yung Ju Yoo, Jeong Min Hwang, Hee Kyung Yang
Software Mentions: 5
Published: over 5 years ago

10.1186/s12918-015-0204-9

Incorporating prior knowledge improves detection of differences in bacterial growth rate
Cited by: 9
Author(s): Lydia M Rickett, Nick Pullen, Matthew Hartley, Cyril Zipfel, Sophien Kamoun, József Baranyi, Richard J. Morris
Software Mentions: 5
Published: almost 11 years ago

10.1038/s41598-021-90641-5

Bioelectrical impedance analysis versus quantitative computer tomography and anthropometry for the assessment of body composition parameters in China
Cited by: 6
Author(s): Qian Qin, Yang Yang, Jingfeng Chen, Yaojun Jiang, Ang Li, Meng Huang, Yihan Dong, Shoujun Wang, Shuzhe Ding
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0244829

Whole-genome sequence analysis and comparisons between drug-resistance mutations and minimum inhibitory concentrations of Mycobacterium tuberculosis isolates causing M/XDR-TB
Cited by: 16
Author(s): Ditthawat Nonghanphithak, Orawee Kaewprasert, Pratchakan Chaiyachat, Wipa Reechaipichitkul, Angkana Chaiprasert, Kiatichai Faksri
Software Mentions: 5
Published: over 5 years ago

10.1186/s13104-017-2455-6

Gene expression differences between PAXgene and Tempus blood RNA tubes are highly reproducible between independent samples and biobanks
Cited by: 12
Author(s): Anne Heidi Skogholt, Einar Ryeng, Sten Even Erlandsen, Frank Skorpen, Svanhild Margrethe Arentz Schønberg, Pål Sætrom
Software Mentions: 5
Published: over 9 years ago

10.1038/s41598-021-90489-9

Auxiliary rapid identification of pathogenic and antagonistic microorganisms associated with Coptis chinensis root rot by high-throughput sequencing
Cited by: 7
Author(s): Hailang Liao, Ling Huang, Na Li, Wenjia Ke, Yiqing Xiang, Yuntong Ma
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-91425-7

Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome
Cited by: 17
Author(s): Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, Toshio Nukada
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-73341-4

Brew temperature, at fixed brew strength and extraction, has little impact on the sensory profile of drip brew coffee
Cited by: 14
Author(s): Mackenzie E. Batali, William D. Ristenpart, Jean‐Xavier Guinard
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12918-015-0197-4

A correction method for systematic error in 1H-NMR time-course data validated through stochastic cell culture simulation
Cited by: 6
Author(s): Stanislav Sokolenko, Marc G. Aucoin
Software Mentions: 5
Published: almost 11 years ago

10.3389/fvets.2019.00123

Age-Related Serum Biochemical Reference Intervals Established for Unweaned Calves and Piglets in the Post-weaning Period
Cited by: 42
Author(s): Kuai Yu, Francesca Canalías, David Solà-Oriol, Laura Arroyo, Raquel Pato, Yolanda Saco, M. Terré, Anna Bassols
Software Mentions: 5
Published: over 7 years ago

10.1093/gigascience/giy054

Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments
Cited by: 82
Author(s): Alexandre Almeida, Alex L. Mitchell, Aleksandra Tarkowska, Alex Bateman
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0167375

Mangrove Crab Ucides cordatus Removal Does Not Affect Sediment Parameters and Stipule Production in a One Year Experiment in Northern Brazil
Cited by: 12
Author(s): Nathalie Pülmanns, Ulf Mehlig, Inga Nordhaus, Ulrich Saint-Paul, Karen Diele
Software Mentions: 5
Published: over 9 years ago

10.1038/s41598-021-92206-y

Seroprevalence of SARS-CoV-2 antibodies in Saint Petersburg, Russia: a population-based study
Cited by: 15
Author(s): Антон Барчук, Dmitriy Skougarevskiy, Kirill Titaev, Daniil Shirokov, Yulia Raskina, Anastasia Novkunkskaya, Petr Talantov, А. А. Исаев, Ekaterina Pomerantseva, Svetlana Zhikrivetskaya, Lubov Barabanova, Vadim Volkov
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pntd.0009504

Developmental changes and metabolic reprogramming during establishment of infection and progression of Trypanosoma brucei brucei through its insect host
Cited by: 16
Author(s): Arunasalam Naguleswaran, Paula Fernandes, Shubha Bevkal, Ruth Rehmann, Pamela Nicholson, Isabel Roditi
Software Mentions: 5
Published: almost 5 years ago

10.2196/26494

Patient Monitoring Alarms of an Intensive Care Unit: Observational Study with DIY Instructions (Preprint)
Cited by: 13
Author(s): Akira-Sebastian Poncette, Maximilian Markus Wunderlich, Claudia Spies, Patrick Heeren, Gerald Vorderwülbecke, Eduardo Salgado, Marc Kastrup, Markus A. Feufel, Felix Balzer
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0009397

Global patterns of aegyptism without arbovirus
Cited by: 10
Author(s): Mark F. Olson, José G. Juárez, Moritz U. G. Kraemer, Jane P. Messina, Gabriel L. Hamer
Software Mentions: 5
Published: over 5 years ago

10.2196/28892

Mental Health and Behavior of College Students During the COVID-19 Pandemic: Longitudinal Mobile Smartphone and Ecological Momentary Assessment Study, Part II
Cited by: 25
Author(s): Dante L Mack, Alex W DaSilva, Courtney Rogers, Elin Hedlund, Eilis I Murphy, Vlado Vojdanovski, Jane Plomp, Weichen Wang, Subigya Nepal, Paul E. Holtzheimer, Dylan D. Wagner, Nicholas C. Jacobson, Meghan L. Meyer, Andrew T. Campbell, Jeremy F. Huckins
Software Mentions: 5
Published: about 5 years ago

10.1186/s13104-016-2331-9

Differential correlation for sequencing data
Cited by: 18
Author(s): Charlotte Siska, Katerina Kechris
Software Mentions: 5
Published: over 9 years ago

10.2196/27633

Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
Cited by: 716
Author(s): András Lánczky, Balázs Győrffy
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0198452

Large-scale patterns of benthic marine communities in the Brazilian Province
Cited by: 76
Author(s): Anaide W. Aued, Franz Smith, Juan P. Quimbayo, Davi V. Cândido, Guilherme O. Longo, Carlos E. L. Ferreira, Jon D. Witman, Sergio R. Floeter, Bárbara Segal
Software Mentions: 5
Published: about 8 years ago

10.1186/s13104-018-3221-0

Proteome-wide comparison between the amino acid composition of domains and linkers
Cited by: 19
Author(s): Daniel C. Brune, Miguel A. Andrade‐Navarro, Pablo Mier
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-020-71864-4

Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing
Cited by: 25
Author(s): Katherine Chacón-Vargas, Julian Torres, Martha Gilés-Gómez, Adelfo Escalante, John G. Gibbons
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-72206-0

Behavioral and trophic segregations help the Tahiti petrel to cope with the abundance of wedge-tailed shearwater when foraging in oligotrophic tropical waters
Cited by: 7
Author(s): Andréas Ravache, Karen Bourgeois, Henri Weimerskirch, Angélique Pagenaud, Sophie de Grissac, Mark G. R. Miller, Sylvain Dromzée, Anne Lorrain, Valérie Allain, Paco Bustamante, Jonas Bylemans, Dianne Gleeson, Yves Letourneur, Éric Vidal
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-021-92826-4

Validating quantitative PCR assays for cfDNA detection without DNA extraction in exercising SLE patients
Cited by: 12
Author(s): Elmo Neuberger, Alexandra Brahmer, Tobias Ehlert, Katrin Kluge, Keito F A Philippi, Simone Boedecker, Julia Weinmann‐Menke, Perikles Simon
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-71355-6

Combining genetic markers with stable isotopes in otoliths reveals complexity in the stock structure of Atlantic bluefin tuna (Thunnus thynnus)
Cited by: 16
Author(s): Deirdre Brophy, Naiara Rodríguez-Ezpeleta, Igaratza Fraile, Haritz Arrizabalaga
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-021-93003-3

A pan-cancer transcriptomic study showing tumor specific alterations in central metabolism
Cited by: 10
Author(s): Ilir Sheraj, Tülïn Güray, Sreeparna Banerjee
Software Mentions: 5
Published: about 5 years ago

10.1186/s12889-021-11761-1

Modeling the effect of age on quantiles of the incubation period distribution of COVID-19
Cited by: 0
Author(s): Xiaohui Liu, Lei Wang, Xiansi Ma, Jiewen Wang, Liwen Wu
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2020.01757

The Composition of Microbial Communities in Six Streams, and Its Association With Environmental Conditions, and Foodborne Pathogen Isolation
Cited by: 9
Author(s): Taejung Chung, Daniel Weller, Jasna Kovač
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0206791

Palaeohistology and life history evolution in cave bears, Ursus spelaeus sensu lato
Cited by: 9
Author(s): Kristof Veitschegger, Christian Kolb, Eli Amson, Torsten M. Scheyer, Marcelo R. Sánchez‐Villagra
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12917-020-02660-5

Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locations
Cited by: 12
Author(s): Corrin Wallis, Lisa Milella, Alison Colyer, Ciaran O’Flynn, Stephen Harris, Lucy J. Holcombe
Software Mentions: 5
Published: over 5 years ago

10.1093/gigascience/giw008

Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade
Cited by: 43
Author(s): Daniel H. Chitwood, Wagner Campos Otoni
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0227028

Spatial ecology of coyotes in the urbanizing landscape of the Cuyahoga Valley, Ohio
Cited by: 4
Author(s): Gregory A. Franckowiak, Marlo Perdicas, Gregory A. Smith
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0175330

Genomic analyses of the ancestral Manila family of Mycobacterium tuberculosis
Cited by: 8
Author(s): Xuehua Wan, Kent J. Koster, Lishi Qian, Edward Desmond, Richard Brostrom, Shaobin Hou, James T. Douglas
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2020.559728

Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds
Cited by: 21
Author(s): Mengying Wang, Alexander W. Eyre, Michael R. Thon, Yeonyee Oh, Ralph A. Dean
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0255241

Detecting joint attention events in mother-infant dyads: Sharing looks cannot be reliably identified by naïve third-party observers
Cited by: 2
Author(s): Kirsty E. Graham, Joanna C. Buryn-Weitzel, Nicole J Lahiff, Claudia Wilke, Katie E. Slocombe
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0229183

Divorce and adolescent academic achievement: Heterogeneity in the associations by parental education
Cited by: 9
Author(s): Sondre Aasen Nilsen, Kyrre Breivik, Bente Wold, Kristin Gärtner Askeland, Børge Sivertsen, Mari Hysing, Tormod Bøe
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pntd.0008699

Development of a multiplex microsphere immunoassay for the detection of antibodies against highly pathogenic viruses in human and animal serum samples
Cited by: 2
Author(s): Rebecca Surtees, Daniel Stern, Katharina Ahrens, Nicole Kromarek, Angelika Lander, Petra Kreher, Sabrina Weiß, Roger Hewson, Emma K. Punch, John N. Barr, Peter T. Witkowski, Emmanuel Couacy‐Hymann, Andrea Marzi, Brigitte G. Dorner, Andreas Kurth
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-68617-8

The origin of early Acheulean expansion in Europe 700 ka ago: new findings at Notarchirico (Italy)
Cited by: 34
Author(s): Marie‐Hélène Moncel, Carmen Santagata, Alison Pereira, Sébastien Nomade, Pierre Voinchet, Jean‐Jacques Bahain, Camille Daujeard, Antonio Curci, Cristina Lemorini, Bruce Hardy, Giacomo Eramo, Claudio Berto, Jean‐Paul Raynal, Marta Arzarello, Beniamino Mecozzi, Alessio Iannucci, Raffaele Sardella, Ignazio Allegretta, Emanuela Delluniversità, Roberto Terzano, Pauline Dugas, Gwenolé Jouanic, Alain Queffelec, Andrea D’Andrea, Rosario Valentini, Eleonora Minucci, Laura Carpentiero, Marcello Piperno
Software Mentions: 5
Published: about 6 years ago

10.1186/s12917-018-1515-z

Cattle transhumance and agropastoral nomadic herding practices in Central Cameroon
Cited by: 29
Author(s): Paolo Carlo Motta, Thibaud Porphyre, Saidou M. Hamman, K. L. Morgan, Victor Ngu Ngwa, Vincent N. Tanya, Eran A. Raizman, Ian Handel, Barend Mark de Clare Bronsvoort
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2021.646124

Soil pH and Organic Carbon Properties Drive Soil Bacterial Communities in Surface and Deep Layers Along an Elevational Gradient
Cited by: 25
Author(s): Qifeng Tian, Ying Jiang, Yanan Tang, Yu Wu, Zhiyao Tang, Feng Liu
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2018.02077

Revisiting the Taxonomy of the Genus Arcobacter: Getting Order From the Chaos
Cited by: 237
Author(s): Alba Pérez-Cataluña, Nuria Salas-Massó, Ana L. Diéguez, Sabela Balboa, Alberto Lema, Jesús L. Romalde, María José Figueras
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pntd.0009440

Serological biomarker for assessing human exposure to Aedes mosquito bites during a randomized vector control intervention trial in northeastern Thailand
Cited by: 5
Author(s): Bénédicte Fustec, Thipruethai Phanitchat, Sirinart Aromseree, Chamsai Pientong, Kesorn Thaewnongiew, Tipaya Ekalaksananan, Dominique Cerqueira, Anne Poinsignon, Éric Elguero, Michael J. Bangs, Neal Alexander, Hans J. Overgaard, Vincent Corbel
Software Mentions: 5
Published: over 5 years ago

10.1093/gbe/evx269

A Genome Resequencing-Based Genetic Map Reveals the Recombination Landscape of an Outbred Parasitic Nematode in the Presence of Polyploidy and Polyandry
Cited by: 53
Author(s): Stephen R. Doyle, Roz Laing, David J. Bartley, Collette Britton, Umer Chaudhry, John S. Gilleard, Nancy Holroyd, Barbara K. Mable, Kirsty Maitland, Alison A. Morrison, Andy Tait, Alan S. Tracey, Matthew Berriman, Eileen Devaney, James A. Cotton, Neil Sargison
Software Mentions: 5
Published: over 8 years ago

10.3389/fgene.2020.615680

Development of a Prognostic Signature Based on Single-Cell RNA Sequencing Data of Immune Cells in Intrahepatic Cholangiocarcinoma
Cited by: 5
Author(s): Miao Su, Kuangyuan Qiao, Xing Xie, Xinying Zhu, Fu-Lai Gao, Changjuan Li, Dongqiang Zhao
Software Mentions: 5
Published: over 5 years ago

10.3390/biology10050405

Human Endogenous Retroviruses (HERVs) and Mammalian Apparent LTRs Retrotransposons (MaLRs) Are Dynamically Modulated in Different Stages of Immunity
Cited by: 6
Author(s): Maria Paola Pisano, Nicole Grandi
Software Mentions: 5
Published: over 5 years ago

10.3389/fneur.2020.546744

LesionQuant for Assessment of MRI in Multiple Sclerosis—A Promising Supplement to the Visual Scan Inspection
Cited by: 7
Author(s): Synne Brune, Einar August Høgestøl, Vanja Cengija, Pål Berg‐Hansen, Piotr Sowa, Gro Owren Nygaard, Hanne F. Harbo, Mona K. Beyer
Software Mentions: 5
Published: over 5 years ago

10.1186/s42523-021-00080-w

The skin microbiome of Xenopus laevis and the effects of husbandry conditions
Cited by: 7
Author(s): Maya Z. Piccinni, Joy E. M. Watts, Marie Fourny, Matthew Guille, Samuel Robson
Software Mentions: 5
Published: over 5 years ago

10.1093/gbe/evz108

Divergent Allometric Trajectories in Gene Expression and Coexpression Produce Species Differences in Sympatrically Speciating Midas Cichlid Fish
Cited by: 8
Author(s): Carmelo Fruciano, Axel Meyer, Paolo Franchini
Software Mentions: 5
Published: over 7 years ago

10.1093/gbe/evz150

Evolution of Phototransduction Genes in Lepidoptera
Cited by: 26
Author(s): Aide Macias-Muñoz, Aline G. Rangel Olguin, Adriana D. Briscoe
Software Mentions: 5
Published: about 7 years ago

10.1007/s00401-021-02299-y

Single-cell profiling of myasthenia gravis identifies a pathogenic T cell signature
Cited by: 21
Author(s): Florian Ingelfinger, Sinduya Krishnarajah, Michael H. Kramer, Sebastian G. Utz, Edoardo Galli, Mirjam Lutz, Pascale Zwicky, Ayse U. Akarca, Nicole Puertas Jurado, Can Ulutekin, David Bamert, Corinne C. Widmer, Luca Piccoli, Federica Sallusto, Nicolás Gonzalo Núñez, Teresa Marafioti, Didier Schneiter, Isabelle Opitz, Antonio Lanzavecchia, Hans H. Jung, Donatella De Feo, Sarah Mundt, Bettina Schreiner, Burkhard Becher
Software Mentions: 5
Published: over 5 years ago

10.1186/s13068-021-01915-z

Physiological and transcriptional response to drought stress among bioenergy grass Miscanthus species
Cited by: 10
Author(s): Jose J De Vega, Abel Teshome, Manfred Klaas, Jim Grant, John Finnan, Susanne Barth
Software Mentions: 5
Published: over 5 years ago

10.1093/gbe/evz280

Differential Expression in Testis and Liver Transcriptomes from Four Species of Peromyscus (Rodentia: Cricetidae)
Cited by: 2
Author(s): Laramie L. Lindsey, Roy N. Platt, C. Douglas Phillips, David A. Ray, Robert D. Bradley
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0226397

An open-sourced, web-based application to improve our ability to understand hunter and angler purchasing behavior from license data
Cited by: 0
Author(s): Nathaniel B. Price, Christopher J. Chizinski, Joseph J. Fontaine, Kevin L. Pope, Micaela Rahe, J. Rawlinson
Software Mentions: 5
Published: almost 6 years ago

10.3390/ijms21176382

Antimicrobial and Amyloidogenic Activity of Peptides Synthesized on the Basis of the Ribosomal S1 Protein from Thermus Thermophilus
Cited by: 17
Author(s): Stanislav R. Kurpe, Sergei Y. Grishin, Alexey K. Surin, Olga M. Selivanova, Р. С. Фадеев, Ulyana F. Dzhus, E. Yu. Gorbunova, Leila G. Mustaeva, Vyacheslav N. Azev, Oxana V. Galzitskaya
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.3724

Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology
Cited by: 11
Author(s): Ana C. Afonso Silva, Natali Santos, Huw A. Ogilvie, Craig Moritz
Software Mentions: 5
Published: about 9 years ago

10.3390/ijms21176033

Identification of Novel Targets of Knee Osteoarthritis Shared by Cartilage and Synovial Tissue
Cited by: 8
Author(s): Chenshuang Li, Zhong Zheng
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-021-07552-y

Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential
Cited by: 20
Author(s): Juanita Engelbrecht, Tuan A. Duong, S. Prabhu, Mohamed Seedat, Noëlani van den Berg
Software Mentions: 5
Published: over 5 years ago

10.1186/s12885-020-07493-x

Identification of ALDH3A2 as a novel prognostic biomarker in gastric adenocarcinoma using integrated bioinformatics analysis
Cited by: 24
Author(s): Zhenhua Yin, Danni Wu, Jianping Shi, Xiao‐Hong Wei, Nuyun Jin, Xiaolan Lu, Xiaohan Ren
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0230284

Lake-depth related pattern of genetic and morphological diatom diversity in boreal Lake Bolshoe Toko, Eastern Siberia
Cited by: 15
Author(s): Kathleen R. Stoof‐Leichsenring, Katharina Dulias, Boris K. Biskaborn, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 5
Published: over 6 years ago

10.3389/fpls.2019.00156

Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in Viola pubescens
Cited by: 12
Author(s): Anne L. Sternberger, Megan J. Bowman, Colin Kruse, Kevin L. Childs, Harvey E. Ballard, Sarah E. Wyatt
Software Mentions: 5
Published: over 7 years ago

10.1186/s12885-020-07689-1

Prognostic implications of alcohol dehydrogenases in hepatocellular carcinoma
Cited by: 25
Author(s): Xiangye Liu, Tingting Li, Delong Kong, Hua You, Fanyun Kong, Renxian Tang
Software Mentions: 5
Published: over 5 years ago

10.1186/s13073-017-0492-3

Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists
Cited by: 63
Author(s): Xun Zhu, Thomas Wolfgruber, Austin Tasato, Cédric Arisdakessian, David Garmire, Lana X. Garmire
Software Mentions: 5
Published: over 8 years ago

10.1002/ajb2.1411

A common‐mesocosm experiment recreates sawgrass ( <i>Cladium jamaicense</i> ) phenotypes from Everglades marl prairies and peat marshes
Cited by: 3
Author(s): Jennifer H. Richards, Paulo C. Olivas
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.00266

Identification of Anti-Mycobacterium and Anti-Legionella Compounds With Potential Distinctive Structural Scaffolds From an HD-PBL Using Phenotypic Screens in Amoebae Host Models
Cited by: 7
Author(s): Nabil Hanna, Sébastien Kicka, Gianpaolo Chiriano, Christopher F. Harrison, Hajer Ouertatani Sakouhi, Valentin Trofimov, Agata Kranjc, Jahn Nitschke, Marco Pagni, Pierre Cosson, Hubert Hilbi, Léonardo Scapozza, Thierry Soldati
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-57108-0

Transcriptional analysis identifies potential biomarkers and molecular regulators in pneumonia and COPD exacerbation
Cited by: 15
Author(s): Wilhelm Bertrams, Kathrin Griss, Maria Han, Kerstin Seidel, Andreas Klemmer, Alexandra Sittka-Stark, Stefan Hippenstiel, Norbert Suttorp, Florian Finkernagel, Jochen Wilhelm, Timm Greulich, Claus Vogelmeier, Julio Vera, Bernd Schmeck
Software Mentions: 5
Published: over 6 years ago

10.1128/mSphere.00071-20

Different Types of Atrial Fibrillation Share Patterns of Gut Microbiota Dysbiosis
Cited by: 36
Author(s): Kun Zuo, Xiandong Yin, Kuibao Li, Jing Zhang, Pan Wang, Jie Jiao, Zheng Liu, Xiaoqing Liu, Jiapeng Liu, Jing Li, Xinchun Yang
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0106381

Diagnostic Accuracy of Computer-Aided Detection of Pulmonary Tuberculosis in Chest Radiographs: A Validation Study from Sub-Saharan Africa
Cited by: 71
Author(s): Marianne Breuninger, Bram van Ginneken, Rick H. H. M. Philipsen, Francis Mhimbira, Jerry Hella, Fred Lwilla, Jan van den Hombergh, Amanda Ross, Levan Jugheli, Dirk Wagner, Klaus Reither
Software Mentions: 5
Published: almost 12 years ago

10.1371/journal.pone.0195461

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome
Cited by: 80
Author(s): Kris A. Christensen, Jong S. Leong, Dionne Sakhrani, Carlo A. Biagi, David R. Minkley, Ruth E. Withler, Eric B. Rondeau, Ben F. Koop, Robert H. Devlin
Software Mentions: 5
Published: over 8 years ago

10.1186/s42523-021-00074-8

Host reproductive cycle influences the pouch microbiota of wild southern hairy-nosed wombats (Lasiorhinus latifrons)
Cited by: 10
Author(s): Sesilje Weiss, David A. Taggart, Ian Smith, Kristofer M. Helgen, Raphael Eisenhofer
Software Mentions: 5
Published: over 5 years ago

10.1172/jci.insight.143058

Targeted DNA methylation profiling reveals epigenetic signatures in peanut allergy
Cited by: 26
Author(s): Xiaoying Zhou, Xiaorui Han, Shu‐Chen Lyu, Bryan Bunning, Laurie Kost, Iris Chang, Shu Cao, Vanitha Sampath, Kari Nadeau
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2020.572504

Microbiomic Analysis on Low Abundant Respiratory Biomass Samples; Improved Recovery of Microbial DNA From Bronchoalveolar Lavage Fluid
Cited by: 13
Author(s): Montserrat Saladié, José A. Caparrós-Martín, Ana Patrícia, Peter Wark, Stephen M. Stick, Fergal O’Gara
Software Mentions: 5
Published: almost 6 years ago

10.1002/1878-0261.12754

Nonsense‐mediated decay factor SMG7 sensitizes cells to TNFα‐induced apoptosis via CYLD tumor suppressor and the noncoding oncogene <i>Pvt1</i>
Cited by: 8
Author(s): Limeng Yang, Vanessa A N Kraft, Susanne Pfeiffer, Juliane Merl-Pham, Xuanwen Bao, Yu An, Stefanie M. Hauck, Joel Schick
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0147528

Reference Charts for Fetal Cerebellar Vermis Height: A Prospective Cross-Sectional Study of 10605 Fetuses
Cited by: 15
Author(s): Pietro Cignini, Maurizio Giorlandino, Pierpaolo Brutti, Lucia Mangiafico, Alessia Aloisi, Claudio Giorlandino
Software Mentions: 5
Published: over 10 years ago

10.1080/21655979.2021.1878763

Long non-coding RNA-based signature for predicting prognosis of hepatocellular carcinoma
Cited by: 9
Author(s): Jie Cao, Lili Wu, Lei Xin, Ke–Qing Shi, Liang Shi, Yifen Shi
Software Mentions: 5
Published: over 5 years ago

10.1186/s12885-020-07535-4

An integrated autophagy-related gene signature predicts prognosis in human endometrial Cancer
Cited by: 13
Author(s): Jun Zhang, Ziwei Wang, Rong Zhao, Lanfen An, Xing Zhou, Yingchao Zhao, Hongbo Wang
Software Mentions: 5
Published: almost 6 years ago

10.1172/jci.insight.149257

Cervicovaginal microbiota and metabolome predict preterm birth risk in an ethnically diverse cohort
Cited by: 27
Author(s): Flavia Flaviani, Natasha L. Hezelgrave, Tokuwa Kanno, Erica M. Prosdocimi, Evonne Chin-Smith, Alexandra Ridout, Djuna K von Maydell, Vikash Mistry, William Wade, Andrew Shennan, Konstantina Dimitrakopoulou, Paul Seed, A. James Mason, Rachel Tribe
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-021-07787-9

The CCCH zinc finger family of soybean (Glycine max L.): genome-wide identification, expression, domestication, GWAS and haplotype analysis
Cited by: 9
Author(s): Xin Hu, Jian‐Fang Zuo
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-019-6114-2

Genus level analysis of PKS-NRPS and NRPS-PKS hybrids reveals their origin in Aspergilli
Cited by: 14
Author(s): Sebastian Theobald, Tammi Camilla Vesth, Mikael Rørdam Andersen
Software Mentions: 5
Published: almost 7 years ago

10.1002/1878-0261.12779

TGF‐β‐induced IGFBP‐3 is a key paracrine factor from activated pericytes that promotes colorectal cancer cell migration and invasion
Cited by: 16
Author(s): Rocío Navarro, Antonio Tapia-Galisteo, Laura Martín-García, Carlos Tarin, Cesáreo Corbacho, Gonzalo Gómez‐López, Esther Sánchez‐Tirado, Susana Campuzano, Paloma Yánez‐Sedeño, Paloma Yánez‐Sedeño, Marta Compte, Luís Álvarez‐Vallina, Laura Sanz
Software Mentions: 5
Published: almost 6 years ago

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Papers Mentioning ggplot2 11,441