cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0180969

Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study
Cited by: 30
Author(s): Peggy S. Lai, Joseph G. Allen, Diane S. Hutchinson, Nadim J. Ajami, Joseph F. Petrosino, Thomas Winters, Christopher Hug, Gary R. Wartenberg, Jose Vallarino, David C. Christiani
Software Mentions: 5
Published: almost 9 years ago

10.3390/insects12010072

Comparison of New Kairomone-Based Lures for Cydia pomonella (Lepidoptera: Tortricidae) in Italy and USA
Cited by: 10
Author(s): Michele Preti, A. L. Knight, Riccardo Favaro, Esteban Basoalto, Marco Tasin, Sergio Angeli
Software Mentions: 5
Published: over 5 years ago

10.3390/insects11110811

Search for Alternative Control Strategies of Drosophila suzukii (Diptera: Drosophilidae): Laboratory Assays Using Volatile Natural Plant Compounds
Cited by: 7
Author(s): Astrid Eben, Frank Sporer, Heidrun Vogt, Bernhard Wetterauer, Michael Wink
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2020.595361

Identification of Hub Prognosis-Associated Oxidative Stress Genes in Pancreatic Cancer Using Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Xin Qiu, Qin-Han Hou, Qiuyue Shi, Haixing Jiang, Shanyu Qin
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0169115

Field-Evolved Resistance in Corn Earworm to Cry Proteins Expressed by Transgenic Sweet Corn
Cited by: 133
Author(s): Galen P. Dively, P. Dilip Venugopal, Chad Finkenbinder
Software Mentions: 5
Published: over 9 years ago

10.3390/insects11110783

Colony-Level Effects of Amygdalin on Honeybees and Their Microbes
Cited by: 5
Author(s): James P. Tauber, Cansu Özge Tozkar, Ryan S. Schwarz, Dawn Lopez, Rebecca E. Irwin, Lynn S. Adler, Jay D. Evans
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0223616

Increased fecundity of Aphis fabae on Vicia faba plants following seed or leaf inoculation with the entomopathogenic fungus Beauveria bassiana
Cited by: 15
Author(s): Rasmus Emil Jensen, Annie Enkegaard, Tove Steenberg
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0242879

Validation of models using basic parameters to differentiate intestinal tuberculosis from Crohn’s disease: A multicenter study from Asia
Cited by: 9
Author(s): Julajak Limsrivilai, Choon Kin Lee, Piyapan Prueksapanich, Kamin Harinwan, Asawin Sudcharoen, Natcha Cheewasereechon, Satimai Aniwan, Pimsiri Sripongpan, Panu Wetwittayakhlang, Ananya Pongpaibul, Anapat Sanpavat, Nonthalee Pausawasdi, Phunchai Charatcharoenwitthaya, Peter Higgins, Siew C. Ng
Software Mentions: 5
Published: over 5 years ago

10.21203/rs.3.rs-119695/v1

Activation of Interferon-Stimulated Transcriptomes and ACE2 Isoforms in Human Airway Epithelium Is Curbed by Janus Kinase Inhibitors
Cited by: 5
Author(s): Hye Kyung Lee, Olive Jung, Lothar Hennighausen
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6899

Insights into the genetic basis of predator‐induced response inDaphnia galeata
Cited by: 9
Author(s): Verena Tams, Jana Nickel, Anne Ehring, Mathilde Cordellier
Software Mentions: 5
Published: over 5 years ago

10.3389/fneur.2016.00238

A Review of the Segmental Diameter of the Healthy Human Spinal Cord
Cited by: 50
Author(s): Arvid Frostell, Ramil Hakim, Eric Peter Thelin, Per Mattsson, Mikael Svensson
Software Mentions: 5
Published: over 9 years ago

10.1002/jrsm.1444

<scp>IPDmada</scp> : An R Shiny tool for analyzing and visualizing individual patient data meta‐analyses of diagnostic test accuracy
Cited by: 7
Author(s): Junfeng Wang, Willem R. Keusters, Lingzi Wen, Mariska Leeflang
Software Mentions: 5
Published: almost 6 years ago

10.3390/insects11090578

The Microbiome of Neotropical Water Striders and Its Potential Role in Codiversification
Cited by: 12
Author(s): Anakena M. Castillo, Kristin Saltonstall, Carlos F. Arias, Karina Chavarria, Luis A. Ramírez‐Camejo, Luis C. Mejía, Luis F. De León
Software Mentions: 5
Published: almost 6 years ago

10.3389/fneur.2019.00103

Vocational Rehabilitation in Mild Traumatic Brain Injury: Supporting Return to Work and Daily Life Functioning
Cited by: 6
Author(s): Frederik Lehman Dornonville de la Cour, Morten Arendt Rasmussen, Eva Meldal Foged, Line Svenning Jensen, Trine Schow
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0200557

Positive association between moderate altitude and chronic lower respiratory disease mortality in United States counties
Cited by: 8
Author(s): Jae Cheol Hwang, Miso Jang, Namkug Kim, Seunghyun Choi, Yeon‐Mok Oh, Joon Beom Seo
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0156550

Faunal Communities Are Invariant to Fragmentation in Experimental Seagrass Landscapes
Cited by: 31
Author(s): Jonathan S. Lefcheck, Scott R. Marion, Alfonso V. Lombana, Robert J. Orth
Software Mentions: 5
Published: about 10 years ago

10.1186/s12977-019-0494-x

Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency
Cited by: 32
Author(s): Sushama Telwatte, Sara Morón-López, Dvir Aran, Peggy Kim, Christine L. Hsieh, Sunil Kumar Joshi, Mauricio Montaño, Warner C. Greene, Atul J. Butte, Joseph K. Wong, Steven A. Yukl
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.6094

Neighboring trees regulate the root‐associated pathogenic fungi on the host plant in a subtropical forest
Cited by: 6
Author(s): Ke-Ke Cheng, Shixiao Yu
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.6477

Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
Cited by: 23
Author(s): Camila Duarte Ritter, Micah Dunthorn, Sten Anslan, Vítor Xavier de Lima, Leho Tedersoo, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.6806

Consequences of multiple imputation of missing standard deviations and sample sizes in meta‐analysis
Cited by: 21
Author(s): Stephan Kambach, Helge Bruelheide, Katharina Gerstner, Jessica Gurevitch, Michael Beckmann, Ralf Seppelt
Software Mentions: 5
Published: over 5 years ago

10.1186/s12284-020-00424-1

Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima
Cited by: 12
Author(s): Philippe Cubry, Hélène Pidon, Kim Nhung Ta, Christine Tranchant‐Dubreuil, Anne-Céline Thuillet, Maria Holzinger, Hélène Adam, Honoré Kam, Harold Chrestin, Alain Ghesquière, F. Ochsenbein, François Sabot, Yves Vigouroux, Laurence Albar, Stéfan Jouannic
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0243265

Genomic variation and epidemiology of SARS-CoV-2 importation and early circulation in Israel
Cited by: 4
Author(s): Neta S. Zuckerman, Efrat Bucris, Yaron Drori, Oran Erster, Danit Sofer, Rakefet Pando, Ella Mendelson, Orna Mor, Michal Mandelboim
Software Mentions: 5
Published: about 5 years ago

10.1016/j.schres.2020.04.017

Modeling perception and behavior in individuals at clinical high risk for psychosis: Support for the predictive processing framework
Cited by: 17
Author(s): Eren Kafadar, Vijay A. Mittal, Gregory P. Strauss, Hannah C. Chapman, Lauren M. Ellman, Sonia Bansal, James M. Gold, Ben Alderson-Day, Samuel Evans, Jamie Moffatt, Steven M. Silverstein, Elaine F. Walker, Scott W. Woods, Philip R. Corlett, Albert R. Powers
Software Mentions: 5
Published: over 5 years ago

10.1126/sciadv.abe2592

Aquaculture mediates global transmission of a viral pathogen to wild salmon
Cited by: 24
Author(s): Gideon Mordecai, Kristina M. Miller, Arthur L. Bass, Andrew Bateman, Amy K. Teffer, Jessica M. Caleta, Emiliano Di Cicco, Angela D. Schulze, Karia H. Kaukinen, Shaorong Li, Amy Tabata, Bradley R. Jones, Tobi J. Ming, Jeffrey B. Joy
Software Mentions: 5
Published: about 5 years ago

10.18632/oncotarget.19662

Gene expression and molecular pathway activation signatures ofMYCN-amplified neuroblastomas
Cited by: 27
Author(s): Ivan Petrov, Maria Suntsova, Elena Tarasovna Ilnitskaya, S. A. Roumiantsev, Maxim Sorokin, Andrew Garazha, Pavel Spirin, Timofey Lebedev, Нуршат Гайфуллин, Sergey Larin, Olga Kovalchuk, Д. М. Коновалов, Vladimir Prassolov, Alexander Roumiantsev, Anton Buzdin
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0230492

Image-based metric of invasiveness predicts response to adjuvant temozolomide for primary glioblastoma
Cited by: 11
Author(s): Susan Christine Massey, Haylye White, Paula Whitmire, Tatum E Doyle, Sandra K. Johnston, Kyle Singleton, Pamela Jackson, Andrea Hawkins-Daarud, Bernard R. Bendok, Alyx Porter, Sujay A. Vora, Jann N. Sarkaria, Leland Hu, Maciej M. Mrugala, Kristin R. Swanson
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0243310

Genetic and morphometric variability between populations of Betula ×oycoviensis from Poland and Czechia: A revised view of the taxonomic treatment of the Ojców birch
Cited by: 2
Author(s): Rostislav Linda, I. Kuneš, Martin Baláš
Software Mentions: 5
Published: over 5 years ago

10.1038/s41597-020-0352-7

Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
Cited by: 69
Author(s): Won-Hee Kang, Young Mi Sim, Namjin Koo, Jae Do Nam, Junesung Lee, Nayoung Kim, Hakgi Jang, Yongmin Kim, Seon-In Yeom
Software Mentions: 5
Published: over 6 years ago

10.1038/s41597-021-00896-w

Generation of a mouse SWATH-MS spectral library to quantify 10148 proteins involved in cell reprogramming
Cited by: 4
Author(s): Uxue Ulanga, Matthew R. Russell, Stefano Patassini, Julie Brazzatti, Ciaren Graham, Anthony D. Whetton, R.L. Graham
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2020.602542

Integrated Analysis of lncRNA-Mediated ceRNA Network Reveals a Prognostic Signature for Hepatocellular Carcinoma
Cited by: 7
Author(s): Jian-Rong Sun, Chen-Fan Kong, Kunmin Xiao, Jia-Lu Yang, Xiang-Ke Qu, Jinghui Sun
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0245444

The relationship between social support, stressful events, and menopause symptoms
Cited by: 20
Author(s): Megan Arnot, Emily H Emmott, Ruth Mace
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0217839

The allometry of proboscis length in Melittidae (Hymenoptera: Apoidae) and an estimate of their foraging distance using museum collections
Cited by: 5
Author(s): Annalie Melin, Harald W. Krenn, Raurie C.K. Bowie, Colin M. Beale, John C. Manning, Jonathan F. Colville
Software Mentions: 5
Published: about 7 years ago

10.3390/insects11040261

Comparative Mortality and Adaptation of a Smurf Assay in Two Species of Tenebrionid Beetles Exposed to Bacillus thuringiensis
Cited by: 3
Author(s): Caroline Zanchi, Ana Sofia Lindeza, Joachim Kurtz
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0246297

Rhabdomyolysis related to acute recreational drug toxicity—A Euro-DEN study
Cited by: 9
Author(s): W. James Waldman, Piotr Maciej Kabata, Alison Dines, David M. Wood, Chris Yates, Fridtjof Heyerdahl, Knut Erik Hovda, Isabelle Giraudon, Jacek Sein Anand
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0238972

India nudges to contain COVID-19 pandemic: A reactive public policy analysis using machine-learning based topic modelling
Cited by: 58
Author(s): Ramit Debnath, Ronita Bardhan
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-019-45368-9

Microbial communities in top- and subsoil of repacked soil columns respond differently to amendments but their diversity is negatively correlated with plant productivity
Cited by: 23
Author(s): Corinne Celestina, Jennifer L. Wood, James B. Manson, Xiaojuan Wang, P. W. G. Sale, Caixian Tang, Ashley E. Franks
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-45515-2

Open chromatin dynamics in prosensory cells of the embryonic mouse cochlea
Cited by: 13
Author(s): Brent A. Wilkerson, Alex Chitsazan, Leah S. VandenBosch, Matthew S. Wilken, Thomas A. Reh, Olivia Bermingham‐McDonogh
Software Mentions: 5
Published: about 7 years ago

10.3390/plants9121794

Nanopore RNA Sequencing Revealed Long Non-Coding and LTR Retrotransposon-Related RNAs Expressed at Early Stages of Triticale SEED Development
Cited by: 15
Author(s): Ilya Kirov, Maxim Dudnikov, Pavel Merkulov, Andrey Shingaliev, Murad Omarov, Elizaveta Kolganova, Alexandra Sigaeva, Г. И. Карлов, A. A. Soloviev
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-45950-1

The Interplay between Incipient Species and Social Polymorphism in the Desert Ant Cataglyphis
Cited by: 9
Author(s): Tali Reiner Brodetzki, Shani Inbar, Pnina Cohen, Serge Aron, Eyal Privman, Abraham Hefetz
Software Mentions: 5
Published: almost 7 years ago

10.18632/oncotarget.23344

APOBEC-mediated mutagenesis in urothelial carcinoma is associated with improved survival, mutations in DNA damage response genes, and immune response
Cited by: 83
Author(s): Alexander Glaser, Damiano Fantini, Yiduo Wang, Yu Yu, Kalen Rimar, Joseph R. Podojil, Stephen D. Miller, Joshua J. Meeks
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-019-45702-1

Drought modulates interactions between arbuscular mycorrhizal fungal diversity and barley genotype diversity
Cited by: 37
Author(s): Agnieszka Sendek, Canan Karakoç, Cameron Wagg, Jara Domínguez‐Begines, Gabriela Martucci Couto, Marcel G. A. van der Heijden, Ali Ahmad Naz, Alfred Lochner, Antonis Chatzinotas, Stefan Klotz, Lorena Gómez‐Aparicio, Nico Eisenhauer
Software Mentions: 5
Published: almost 7 years ago

10.18632/oncotarget.23423

Signature of survival: a 18F-FDG PET based whole-liver radiomic analysis predicts survival after 90Y-TARE for hepatocellular carcinoma
Cited by: 39
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Mario Jreige, Marie Nicod Lalonde, Marina Silva-Monteiro, John O. Prior, Alban Denys, Adrien Depeursinge, Niklaus Schaefer
Software Mentions: 5
Published: over 8 years ago

10.34133/2019/5893953

Using High-Throughput Phenotyping to Explore Growth Responses to Mycorrhizal Fungi and Zinc in Three Plant Species
Cited by: 22
Author(s): Stephanie J. Watts‐Williams, Nathaniel Jewell, Chris Brien, Bettina Berger, Trevor Garnett, Timothy R. Cavagnaro
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-019-46923-0

The Predominant Oral Microbiota Is Acquired Early in an Organized Pattern
Cited by: 63
Author(s): Rosalyn Sulyanto, Zachary A. Thompson, Clifford J. Beall, Eugene J. Leys, Ann L. Griffen
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-019-47094-8

Odors from phylogenetically-distant plants to Brassicaceae repel an herbivorous Brassica specialist
Cited by: 11
Author(s): Chase A. Stratton, Elisabeth A. Hodgdon, Cesar Rodriguez‐Saona, Anthony M. Shelton, Yolanda H. Chen
Software Mentions: 5
Published: almost 7 years ago

10.3390/cells9091937

Arabidopsis thaliana cbp80, c2h2, and flk Knockout Mutants Accumulate Increased Amounts of Circular RNAs
Cited by: 7
Author(s): Anna Philips, Katarzyna Nowis, Michał Stelmaszczuk, Jan Podkowiński, Luiza Handschuh, Paulina Jackowiak, Marek Figlerowicz
Software Mentions: 5
Published: almost 6 years ago

10.18632/oncotarget.23206

Coagulation cascade and complement system in systemic lupus erythematosus
Cited by: 19
Author(s): Yan Liang, Shangbo Xie, Changhao Wu, Yuan Hu, Qin Zhang, Si Li, Yin‐Guang Fan, Rui‐Xue Leng, Hai‐Feng Pan, Huabao Xiong, Dong‐Qing Ye
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-019-48488-4

Predicting Breast Cancer in Breast Imaging Reporting and Data System (BI-RADS) Ultrasound Category 4 or 5 Lesions: A Nomogram Combining Radiomics and BI-RADS
Cited by: 75
Author(s): Weiquan Luo, Qing-xiu Huang, Xiaowen Huang, Hang-Tong Hu, Fuqiang Zeng, Wei Wang
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-021-90489-9

Auxiliary rapid identification of pathogenic and antagonistic microorganisms associated with Coptis chinensis root rot by high-throughput sequencing
Cited by: 7
Author(s): Hailang Liao, Ling Huang, Na Li, Wenjia Ke, Yiqing Xiang, Yuntong Ma
Software Mentions: 5
Published: about 5 years ago

10.1007/s11104-017-3325-7

Impacts of peat bulk density, ash deposition and rainwater chemistry on establishment of peatland mosses
Cited by: 8
Author(s): Alice Noble, Sheila M. Palmer, David J. Glaves, Alistair Crowle, Joseph Holden
Software Mentions: 5
Published: almost 9 years ago

10.1186/s40462-021-00272-8

Adaptive drift and barrier-avoidance by a fly-forage migrant along a climate-driven flyway
Cited by: 9
Author(s): Wouter M. G. Vansteelant, Laura Gangoso, W. Bouten, Duarte S. Viana, Jordi Figuerola
Software Mentions: 5
Published: almost 5 years ago

10.3389/fimmu.2017.00308

Expression of Serum microRNAs is Altered During Acute Graft-versus-Host Disease
Cited by: 23
Author(s): Rachel E Crossland, Jean Norden, Mateja Kralj Juric, Kile Green, Kim Pearce, Clare Lendrem, Hildegard Greinix, AM Dickinson
Software Mentions: 5
Published: over 9 years ago

10.3389/fimmu.2021.614246

Reduced Placental Transfer of Antibodies Against a Wide Range of Microbial and Vaccine Antigens in HIV-Infected Women in Mozambique
Cited by: 10
Author(s): Selena Alonso, Marta Vidal, Gemma Ruiz‐Olalla, Raquel González, Maria Nélia Manaca, Chenjerai Jairoce, Miquel Vázquez-Santiago, Reyes Balcells, Anifa Valá, Maria Rosario, Pau Cisteró, Laura Fuente-Soro, Marta Cova, Evelina Angov, Arsénio Nhacolo, Esperança Sevene, John J. Aponte, Eusébio Macete, Ruth Aguilar, Alfredo Mayor, Clara Menéndez, Carlota Dobaño, Gemma Moncunill
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0221596

Sepsis information-seeking behaviors via Wikipedia between 2015 and 2018: A mixed methods retrospective observational study
Cited by: 7
Author(s): Craig S. Jabaley, Robert F. Groff, Theresa J. Barnes, Mark Caridi-Scheible, James M. Blum, Vikas N O’Reilly-Shah
Software Mentions: 5
Published: almost 7 years ago

10.1186/s40462-021-00260-y

Analysis of local habitat selection and large-scale attraction/avoidance based on animal tracking data: is there a single best method?
Cited by: 3
Author(s): Moritz Mercker, Philipp Schwemmer, Verena Peschko, Leonie Enners, Stefan Garthe
Software Mentions: 5
Published: about 5 years ago

10.7150/thno.51795

Genome-wide CRISPR/Cas9 knockout screening uncovers a novel inflammatory pathway critical for resistance to arginine-deprivation therapy
Cited by: 11
Author(s): Cheng‐Ying Chu, Yi‐Ching Lee, Cheng-Han Hsieh, Chi‐Tai Yeh, Tsu‐Yi Chao, Po-Hung Chen, I-Hsuan Lin, Tsung‐Han Hsieh, Jing Wen Shih, Chia‐Hsiung Cheng, Che-Chang Chang, Po-Chuan Lin, Yuan‐Li Huang, Tsung-Ming Chen, Yun Yen, David K. Ann, Hsing-Jien Kung
Software Mentions: 5
Published: over 5 years ago

10.1186/s40462-020-00223-9

Behavioral modifications by a large-northern herbivore to mitigate warming conditions
Cited by: 7
Author(s): Jyoti S. Jennewein, Mark Hebblewhite, Peter J. Mahoney, Sophie L. Gilbert, Arjan J. H. Meddens, Natalie T. Boelman, Kyle Joly, Kimberly Jones, Kalin A. Kellie, Scott M. Brainerd, Lee A. Vierling, Jan U. H. Eitel
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0226575

Neuronal and glial DNA methylation and gene expression changes in early epileptogenesis
Cited by: 17
Author(s): Toni Berger, Magnus Dehli Vigeland, Hanne Sagsveen Hjorthaug, Lars Etholm, Cecilie G. Nome, Erik Taubøll, Kjell Heuser, Kaja Kristine Selmer
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-68617-8

The origin of early Acheulean expansion in Europe 700 ka ago: new findings at Notarchirico (Italy)
Cited by: 34
Author(s): Marie‐Hélène Moncel, Carmen Santagata, Alison Pereira, Sébastien Nomade, Pierre Voinchet, Jean‐Jacques Bahain, Camille Daujeard, Antonio Curci, Cristina Lemorini, Bruce Hardy, Giacomo Eramo, Claudio Berto, Jean‐Paul Raynal, Marta Arzarello, Beniamino Mecozzi, Alessio Iannucci, Raffaele Sardella, Ignazio Allegretta, Emanuela Delluniversità, Roberto Terzano, Pauline Dugas, Gwenolé Jouanic, Alain Queffelec, Andrea D’Andrea, Rosario Valentini, Eleonora Minucci, Laura Carpentiero, Marcello Piperno
Software Mentions: 5
Published: almost 6 years ago

10.1007/s12550-021-00434-y

Effects of temperature and soil fauna on the reduction and leaching of deoxynivalenol and zearalenone from Fusarium graminearum-infected maize stubbles
Cited by: 3
Author(s): Friederike Meyer-Wolfarth, Elisabeth Oldenburg, Torsten Meiners, Katherine Muñoz, Stefan Schrader
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0243205

Neuropeptide S receptor gene Asn107 polymorphism in obese male individuals in Pakistan
Cited by: 3
Author(s): Aftab Ahmad, Fahad Almsned, Pasha Ghazal, Malik Waqar Ahmed, M. Saleet Jafri, Habib Bokhari
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-91425-7

Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome
Cited by: 17
Author(s): Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, Toshio Nukada
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-69672-x

A footprint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota
Cited by: 39
Author(s): Rodrigo Alegria Terrazas, Katharin Balbirnie-Cumming, Jenny Morris, Pete E. Hedley, Joanne Russell, Eric Paterson, Elizabeth M. Baggs, Eyal Fridman, Davide Bulgarelli
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0154712

Stimulation of the Salicylic Acid Pathway Aboveground Recruits Entomopathogenic Nematodes Belowground
Cited by: 21
Author(s): Camila C. Filgueiras, Denis S. Willett, Alcides Moino, Martín Pareja, Fahiem El Borai, D. W. Dickson, Lukasz L. Stelinski, Larry W. Duncan
Software Mentions: 5
Published: about 10 years ago

10.1002/ctm2.498

An epigenomic landscape of cervical intraepithelial neoplasia and cervical cancer using single‐base resolution methylome and hydroxymethylome
Cited by: 6
Author(s): Yingxin Han, Liyan Ji, Yanfang Guan, Mengya Ma, Pansong Li, Yinge Xue, Yinxin Zhang, Wanqiu Huang, Yuhua Gong, Li Jiang, Xipeng Wang, Hong Xie, Boping Zhou, Jiayin Wang, Junwen Wang, Jinghua Han, Yuliang Deng, Xin Yi, Fei Gao, Jian Huang
Software Mentions: 5
Published: almost 5 years ago

10.3390/plants10020267

Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA Turnover
Cited by: 5
Author(s): Axel J Giudicatti, Ariel Hernán Tomassi, Pablo Andrés Manavella, Agustín Lucas Arce
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.7075

Visual complexity modelling based on image features fusion of multiple kernels
Cited by: 14
Author(s): Carlos Fernández-Lozano, Adrián Carballal, Penousal Machado, Andréa Cynthia Santos, Juan Romero
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0238689

Assessment of transcriptomic constraint-based methods for central carbon flux inference
Cited by: 3
Author(s): Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S. Lun
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0235851

Does laughing have a stress-buffering effect in daily life? An intensive longitudinal study
Cited by: 6
Author(s): Thea Zander-Schellenberg, Isabella Mutschler Collins, Marcel Miché, Charles R.G. Guttmann, Roselind Lieb, Karina Wahl
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0221862

Parameterization-induced uncertainties and impacts of crop management harmonization in a global gridded crop model ensemble
Cited by: 38
Author(s): Christian Folberth, Joshua Elliott, Christoph Müller, Juraj Balkovič, James Chryssanthacopoulos, R. C. Izaurralde, Curtis D. Jones, Nikolay Khabarov, Wenfeng Liu, Ashwan Reddy, Erwin Schmid, Rastislav Skalský, Hong Yang, Almut Arneth, Philippe Ciais, Delphine Deryng, P. Lawrence, Stefan Olin, Thomas A. M. Pugh, Alex C. Ruane, Xuhui Wang
Software Mentions: 5
Published: almost 7 years ago

10.3390/ani10010166

Effect of Total Dissolved Gas Supersaturation on the Survival of Bighead Carp (Hypophthalmichthys Nobilis)
Cited by: 7
Author(s): Deng Yuxuan, Chengyang Cao, Xiaoqing Liu, Quan Yuan, Cuixia Feng, Haoran Shi, Yong Yang, Yanyan Wu
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.8317

Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing
Cited by: 65
Author(s): Xiaowei Chen, Haixiang Sun, Fei Jiang, Yan Shen, Xin Li, HU Xue-ju, Xiao-Min Shen, Pingmin Wei
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.8141

Experimental evaluation of genomic DNA degradation rates for the pathogen Pseudogymnoascus destructans (Pd) in bat guano
Cited by: 5
Author(s): Jenny Urbina, Tara Chestnut, Donelle Schwalm, Jenn Allen, Taal Levi
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.9893

Spatial ecology of little egret (Egretta garzetta) in Hong Kong uncovers preference for commercial fishponds
Cited by: 5
Author(s): Chun-Chiu Pang, Yik-Hei Sung, Yun-tak Chung, Hak-king Ying, Helen Hoi Ning Fong, Yat-tung Yu
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12863-020-0821-1

Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues
Cited by: 6
Author(s): Jaroslav Klápště, Dean F. Meason, Heidi S. Dungey, Emily Telfer, Paul Silcock, Simon Rapley
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-021-04106-7

EzMAP: Easy Microbiome Analysis Platform
Cited by: 0
Author(s): Gnanendra Shanmugam, Song Hee Lee, Junhyun Jeon
Software Mentions: 5
Published: about 5 years ago

10.1007/s13238-020-00762-2

A human circulating immune cell landscape in aging and COVID-19
Cited by: 158
Author(s): Yingfeng Zheng, Xiuxing Liu, Wenqing Le, Lihui Xie, Li He, Wen Wen, Si Wang, Shuai Ma, Zhaofeng Huang, Jinguo Ye, Wen Shi, Yanxia Ye, Zunpeng Liu, Moshi Song, Weiqi Zhang, Jing‐Dong J. Han, Juan Carlos Izpisúa Belmonte, Chuan-Le Xiao, Jing Qu, Hongyang Wang, Guang‐Hui Liu, Wenru Su
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.2387

Functional, size and taxonomic diversity of fish along a depth gradient in the deep sea
Cited by: 33
Author(s): Beth L. Mindel, Francis Neat, Clive N. Trueman, Thomas J. Webb, Julia L. Blanchard
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0147493

Does Dark-Spot Syndrome Experimentally Transmit among Caribbean Corals?
Cited by: 12
Author(s): Carly J. Randall, Adán Guillermo Jordán-Garza, Erinn M. Muller, Robert van Woesik
Software Mentions: 5
Published: over 10 years ago

10.3389/fmicb.2020.02023

Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode
Cited by: 12
Author(s): Laure Bellec, Marie-Anne Cambon-Bonavita, Lucile Durand, Johanne Aubé, Nicolas Gayet, Roberto Sandulli, Christophe Brandily, Daniela Zeppilli
Software Mentions: 5
Published: almost 6 years ago

10.3390/ani10112013

Genomic Characterization of the Istrian Shorthaired Hound
Cited by: 2
Author(s): Ivona Djurkin Kušec, Ivica Bošković, Minja Zorc, Kristina Gvozdanović, Dubravko Škorput, Peter Dovč, Goran Kušec
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-71864-4

Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing
Cited by: 25
Author(s): Katherine Chacón-Vargas, Julian Torres, Martha Gilés-Gómez, Adelfo Escalante, John G. Gibbons
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-72206-0

Behavioral and trophic segregations help the Tahiti petrel to cope with the abundance of wedge-tailed shearwater when foraging in oligotrophic tropical waters
Cited by: 7
Author(s): Andréas Ravache, Karen Bourgeois, Henri Weimerskirch, Angélique Pagenaud, Sophie de Grissac, Mark G. R. Miller, Sylvain Dromzée, Anne Lorrain, Valérie Allain, Paco Bustamante, Jonas Bylemans, Dianne Gleeson, Yves Letourneur, Éric Vidal
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.9368

Tip dating with fossil sites and stratigraphic sequences
Cited by: 7
Author(s): Benedict King, Martin Rücklin
Software Mentions: 5
Published: almost 6 years ago

10.1534/g3.119.400898

Interactively AUDIT Your Growth Curves with a Suite of R Packages
Cited by: 4
Author(s): Nicolas Coutin, Guri Giaever, Corey Nislow
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-019-5974-9

Comparison of gene expression profile of the spinal cord of sprouting-capable neonatal and sprouting-incapable adult mice
Cited by: 9
Author(s): Hiroshi Tsujioka, Toshio Yamashita
Software Mentions: 5
Published: almost 7 years ago

10.1186/s40478-020-00988-5

Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer’s disease
Cited by: 64
Author(s): Charlotte Mezö, Nikolaos Dokalis, Omar Mossad, Ori Staszewski, Jana Neuber, Bahtiyar Yılmaz, Daniel Schnepf, Mercedes Gomez de Agüero, Stephanie C. Ganal‐Vonarburg, Andrew J. Macpherson, Melanie Meyer‐Luehmann, Peter Staeheli, Thomas Blank, Marco Prinz, Daniel Erny
Software Mentions: 5
Published: almost 6 years ago

10.1007/s00442-021-04977-w

Bank vole alarm pheromone chemistry and effects in the field
Cited by: 1
Author(s): Thorbjörn Sievert, Hannu Ylönen, James D. Blande, Amélie Saunier, Dave van der Hulst, Olga Ylönen, Marko Haapakoski
Software Mentions: 5
Published: almost 5 years ago

10.1186/1471-2164-14-853

Reprogramming of lysosomal gene expression by interleukin-4 and Stat6
Cited by: 18
Author(s): Louise M Brignull, Zsolt Czimmerer, Hafida Saidi, Bence Dániel, Izabel Vianna Villela, Nathan W. Bartlett, Sebastian L. Johnston, Lisiane B. Meira, László Nagy, Axel Nohturfft
Software Mentions: 5
Published: over 12 years ago

10.1186/s12864-019-6314-9

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause
Cited by: 32
Author(s): Thomas J. Colgan, Sive Finlay, Mark J. F. Brown, James C. Carolan
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-020-07027-6

Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome
Cited by: 21
Author(s): Yiqian Li, Wenyan Nong, Tobias Baril, Ho Yin Yip, Thomas Swale, Alexander Hayward, David Ferrier, Jerome H. L. Hui
Software Mentions: 5
Published: over 5 years ago

10.12688/f1000research.55027.1

rmcorrShiny: A web and standalone application for repeated measures correlation
Cited by: 14
Author(s): Laura R. Marusich, Jonathan Z. Bakdash
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-019-6240-x

Didelphis albiventris: an overview of unprecedented transcriptome sequencing of the white-eared opossum
Cited by: 0
Author(s): Íria Gabriela Dias dos Santos, Tiago Antônio de Oliveira Mendes, Gerluza Aparecida Borges Silva, Amanda Maria Sena Reis, Cláudia Barros Monteiro-Vitorello, Patrícia Dayane Carvalho Schaker, Roberto Hirochi Herai, André Brait Carneiro Fabotti, Luiz Lehmann Coutinho, Érika Cristina Jorge
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0194642

Mental distress and perceived wealth, justice and freedom across eight countries: The invisible power of the macrosystem
Cited by: 12
Author(s): Saskia Scholten, Julia Velten, Jürgen Margraf
Software Mentions: 5
Published: about 8 years ago

10.1093/cid/ciab528

Global Respiratory Syncytial Virus–Related Infant Community Deaths
Cited by: 26
Author(s): Natalie I Mazur, Yvette N Löwensteyn, Joukje Willemsen, Christopher Gill, Leah S Forman, Lawrence Mwananyanda, Dianna M. Blau, Robert F. Breiman, Shabir A. Madhi, Sana Mahtab, Emily S. Gurley, Shams El Arifeen, Nega Assefa, J. Anthony G. Scott, Dickens Onyango, Beth A Tippet Barr, Karen L. Kotloff, Samba O. Sow, Inácio Mandomando, Ikechukwu U. Ogbuanu, Amara Jambai, Quique Bassat, Mauricio T. Caballero, Fernando P. Polack, Saad B. Omer, Abdul Momin Kazi, Eric A F Simões, Ashish Satav, Louis Bont
Software Mentions: 5
Published: almost 5 years ago

10.18632/aging.102841

Identification of biomarkers related to CD8+ T cell infiltration with gene co-expression network in clear cell renal cell carcinoma
Cited by: 47
Author(s): Jiaxing Lin, Meng Yu, Xiao Xu, Yutao Wang, Haotian Xing, Jing An, Jieping Yang, Chaozhi Tang, Dan Sun, Yuyan Zhu
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-017-3543-7

The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes
Cited by: 56
Author(s): Jon Bohlin, Vegard Eldholm, John H.‐O. Pettersson, Ola Brønstad Brynildsrud, Lars-Gustav Snipen
Software Mentions: 5
Published: over 9 years ago

10.1186/s12864-018-4541-0

Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigma
Cited by: 8
Author(s): Shannon J. O’Leary, Christopher M. Hollenbeck, Robert R. Vega, John R. Gold, David S. Portnoy
Software Mentions: 5
Published: over 8 years ago

10.12688/f1000research.6536.1

A reanalysis of mouse ENCODE comparative gene expression data
Cited by: 90
Author(s): Yoav Gilad, Orna Mizrahi-Man
Software Mentions: 5
Published: about 11 years ago

10.18632/aging.203121

Identification of microenvironment related potential biomarkers of biochemical recurrence at 3 years after prostatectomy in prostate adenocarcinoma
Cited by: 9
Author(s): Xiaoru Sun, Lu Wang, Hongkai Li, Chuandi Jin, Yuanyuan Yu, Lei Hou, Xinhui Liu, Yifan Yu, Ran Yan, Fuzhong Xue
Software Mentions: 5
Published: about 5 years ago

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