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Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: almost 3 years ago
4,921 dependent packages
2,865,232 downloads last month

Enhanced Analysis
Educational Contributors: wilke@austin.utexas.edu diggsb@ohsu.edu ruderman@usc.edu joran.elias@umontana.edu rjc2003@qatar-med.cornell.edu skopf@caltech.edu m.colombo@ed.ac.uk i.kosmidis@ucl.ac.uk melimore86@ufl.edu amurray@vt.edu nick.kennedy@ed.ac.uk dongzhuoer@mail.nankai.edu.cn benjamin.reisman@vanderbilt.edu briandk@umd.edu hye@ucsd.edu thiyanga.talagala@monash.edu brenstsr@miamioh.edu saladi@caltech.edu buyske@stat.rutgers.edu rjake@sas.upenn.edu mcmurdie@stanford.edu paul@stat.auckland.ac.nz claire.mcwhite@utexas.edu luke.mcguinness@bristol.ac.uk mdlama@wm.edu hjeppson@iastate.edu
Repository Activity:
Repository Owner: tidyverse (organization)
The tidyverse is a collection of R packages that share common principles and are designed to work together seamlessly
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +520 Educational commit emails
    26 contributors with educational email addresses
  • +18 Science terms in README
    9 scientific terms found in README
Very Likely Science (100)

Papers Mentioning ggplot2 11,441

10.1371/journal.pgen.1006840
Temporal dynamics of neurogenomic plasticity in response to social interactions in male threespined sticklebacks
Cited by: 54
Author(s): Syed Bukhari, Michael C. Saul, Christopher H. Seward, Huimin Zhang, Miles K. Bensky, Noelle James, Sihai Dave Zhao, Sriram Chandrasekaran, Lisa Stubbs, Alison M. Bell
Software Mentions: 6
Published: about 9 years ago
10.1371/journal.pgen.1008632
Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination
Cited by: 24
Author(s): Wioletta Czaja, Douda Bensasson, Hyo Won Ahn, David Garfinkel, Casey M. Bergman
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pgen.1009652
Powerful detection of polygenic selection and evidence of environmental adaptation in US beef cattle
Cited by: 22
Author(s): Troy N. Rowan, Harly J. Durbin, Christopher M. Seabury, Robert D. Schnabel, Jared E. Decker
Software Mentions: 6
Published: about 5 years ago
10.1371/journal.pgen.1007633
Glycine promotes longevity in Caenorhabditis elegans in a methionine cycle-dependent fashion
Cited by: 45
Author(s): Yasmine J. Liu, Georges E. Janssens, Rebecca L. McIntyre, Marte Molenaars, Rashmi Kamble, Arwen W. Gao, Aldo Jongejan, Michel van Weeghel, Alyson W. MacInnes, Riekelt H. Houtkooper
Software Mentions: 6
Published: over 7 years ago
10.1371/journal.pmed.1002730
Predicting survival from colorectal cancer histology slides using deep learning: A retrospective multicenter study
Cited by: 505
Author(s): Jakob Nikolas Kather, Johannes Krisam, Pornpimol Charoentong, Tom Luedde, Esther Herpel, Cleo Aron Weis, Timo Gaiser, Alexander Marx, Nektarios A. Valous, Dyke Ferber, Lina Jansen, Constantino Carlos Reyes-Aldasoro, Inka Zörnig, Dirk Jäger, Hermann Brenner, Jenny Chang‐Claude, Michael Hoffmeister, Niels Halama
Software Mentions: 6
Published: over 7 years ago
10.1371/journal.pmed.1003084
Quantification of glucose-6-phosphate dehydrogenase activity by spectrophotometry: A systematic review and meta-analysis
Cited by: 29
Author(s): Daniel Pfeffer, Benedikt Ley, Rosalind E. Howes, Patrick Adu, Mohammad Shafiul Alam, Pooja Bansil, Yap Boum, Marcelo Augusto Mota Brito, Pimlak Charoenkwan, Archie Clements, Liwang Cui, Zeshuai Deng, OJ Egesie, Fe Esperanza Espino, Michael E. von Fricken, Muzamil Mahdi Abdel Hamid, Yongshu He, Gisela Henriques, Wasif Ali Khan, Nimol Khim, Saorin Kim, Marcus Lacerda, Chanthap Lon, Asrat Hailu Mekuria, Didier Ménard, Wuelton Marcelo Monteiro, François Nosten, Nwe Nwe Oo, Sampa Pal, Duangdao Palasuwan, Sunil Parikh, Ayodhia Pitaloka Pasaribu, Jeanne Rini Poespoprodjo, David J. Price, Arantxa Roca-Feltrer, Michelle E. Roh, David Saunders, Michele Spring, Inge Sutanto, Kamala Ley-Thriemer, Thomas A. Weppelmann, Lorenz von Seidlein, Ari Winasti Satyagraha, Germana Bancone, Gonzalo J. Domingo, Ric Price
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pmed.1002869
Assessing trends in the content of maternal and child care following a health system strengthening initiative in rural Madagascar: A longitudinal cohort study
Cited by: 9
Author(s): Camille Ezran, Matthew H. Bonds, Ann C. Miller, Laura Cordier, Justin Haruna, David Mwanawabenea, Marius Randriamanambintsoa, Hery-Tiana Rahaniraka Razanadrakato, Mohammed Ali Ouenzar, Bénédicte Razafinjato, Megan Murray, Andrés Garchitorena
Software Mentions: 6
Published: about 7 years ago
10.1371/journal.pntd.0006698
Population genomics of Culiseta melanura, the principal vector of Eastern equine encephalitis virus in the United States
Cited by: 5
Author(s): John Soghigian, Theodore G. Andreadis, Goudarz Molaei
Software Mentions: 6
Published: about 8 years ago
10.1371/journal.pntd.0009537
Spatio-temporal modelling of the first Chikungunya epidemic in an intra-urban setting: The role of socioeconomic status, environment and temperature
Cited by: 10
Author(s): Laís Picinini Freitas, Alexandra M. Schmidt, William Cossich, Oswaldo Gonçalves Cruz, Marília Sá Carvalho
Software Mentions: 6
Published: about 5 years ago
10.1371/journal.pntd.0008780
Genomic and transcriptional analysis of genes containing fibrinogen and IgSF domains in the schistosome vector Biomphalaria glabrata, with emphasis on the differential responses of snails susceptible or resistant to Schistosoma mansoni
Cited by: 8
Author(s): Lijun Lu, Eric S. Loker, Coen M. Adema, Si-Ming Zhang, Lijing Bu
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pone.0170691
Asphyxia in the Newborn: Evaluating the Accuracy of ICD Coding, Clinical Diagnosis and Reimbursement: Observational Study at a Swiss Tertiary Care Center on Routinely Collected Health Data from 2012-2015
Cited by: 18
Author(s): Olga Endrich, Carole Rimle, Marcel Zwahlen, Karen Triep, Luigi Raio, Mathias Nelle
Software Mentions: 6
Published: over 9 years ago
10.1371/journal.pone.0239681
The Znt7-null mutation has sex dependent effects on the gut microbiota and goblet cell population in the mouse colon
Cited by: 3
Author(s): Mary E. Kable, Niknaz Riazati, Catherine P. Kirschke, Junli Zhao, Surapun Tepaamorndech, Liping Huang
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pone.0221408
Distinct temporal dynamics of planktonic archaeal and bacterial assemblages in the bays of the Yellow Sea
Cited by: 16
Author(s): Jong-Geol Kim, Joo-Han Gwak, Man‐Young Jung, Sung‐Uk An, Jung‐Ho Hyun, Sanghoon Kang, Sung‐Keun Rhee
Software Mentions: 6
Published: about 7 years ago
10.1371/journal.pone.0223147
Gibberellic acid in Citrus spp. flowering and fruiting: A systematic review
Cited by: 22
Author(s): Alfonso Garmendia, Roberto Beltrán, Carlos Zornoza, Francisco J. García‐Breijo, José Luis Peset Reig, Hugo Merlé
Software Mentions: 6
Published: almost 7 years ago
10.1371/journal.pone.0224123
Clonal diversity and spatial genetic structure in the long-lived herb, Prairie trillium
Cited by: 2
Author(s): Jennifer R. Mandel, C. Kendall Major, Randall J. Bayer, James E. Moore
Software Mentions: 6
Published: almost 7 years ago
10.1371/journal.pone.0195480
Natural regeneration on seismic lines influences movement behaviour of wolves and grizzly bears
Cited by: 33
Author(s): Laura Finnegan, Karine E. Pigeon, Jerome Cranston, Mark Hebblewhite, Marco Musiani, Lalenia Neufeld, Fiona K. A. Schmiegelow, Julie Duval, Gordon B. Stenhouse
Software Mentions: 6
Published: over 8 years ago
10.1371/journal.pone.0256793
Designing and validating a Markov model for hospital-based addiction consult service impact on 12-month drug and non-drug related mortality
Cited by: 5
Author(s): Caroline King, Honora Englander, P Todd Korthuis, Joshua A. Barocas, K. John McConnell, Cynthia D. Morris, Ryan Cook
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pone.0210331
Atlantic West Ophiothrix spp. in the scope of integrative taxonomy: Confirming the existence of Ophiothrix trindadensis Tommasi, 1970
Cited by: 12
Author(s): Renata Alitto, A. Cecília Z. Amaral, Letícia Dias de Oliveira, Helena Serrano, Karin Regina Seger, Pablo Damian Borges Guilherme, Maikon Di Domênico, Ana B. Christensen, Luciana Bolsoni Lourenço, Marcos Tavares, Michela Borges
Software Mentions: 6
Published: over 7 years ago
10.1371/journal.pone.0223600
Suppression treatment differentially influences the microbial community and the occurrence of broad host range plasmids in the rhizosphere of the model cover crop Avena sativa L.
Cited by: 9
Author(s): Marco Allegrini, Emma Laura Alfaro Gómez, Kornelia Smalla, María Celina Zabaloy
Software Mentions: 6
Published: almost 7 years ago
10.1371/journal.pone.0211855
Are hummingbirds generalists or specialists? Using network analysis to explore the mechanisms influencing their interaction with nectar resources
Cited by: 26
Author(s): Claudia I. Rodríguez-Flores, Juan Francisco Ornelas, Susan M. Wethington, María del Coro Arizmendi
Software Mentions: 6
Published: over 7 years ago
10.1371/journal.pone.0207538
Integrating spatial indicators in the surveillance of exploited marine ecosystems
Cited by: 11
Author(s): Marta M. Rufino, Nicolas Bez, Anik Brind’Amour
Software Mentions: 6
Published: almost 8 years ago
10.1371/journal.pone.0203361
In silico drug absorption tract: An agent-based biomimetic model for human oral drug absorption
Cited by: 3
Author(s): Jianyuan Deng, Anika Jhandey, Xiao Zhu, Zhibo Yang, Kin Fu Patrick Yik, Zhong Zuo, Tai Ning Lam
Software Mentions: 6
Published: about 8 years ago
10.1371/journal.pone.0200462
Is increased colorectal screening effective in preventing distant disease?
Cited by: 5
Author(s): Gaius J. Augustus, Denise J. Roe, Elizabeth T. Jacobs, Peter Lance, Nathan A. Ellis
Software Mentions: 6
Published: about 8 years ago
10.1371/journal.pone.0215838
Mutplot: An easy-to-use online tool for plotting complex mutation data with flexibility
Cited by: 11
Author(s): Weiwei Zhang, Cheng Wang, Xuan Zhang
Software Mentions: 6
Published: over 7 years ago
10.1371/journal.pone.0239122
DArTSeq SNP-based markers revealed high genetic diversity and structured population in Ethiopian cowpea [Vigna unguiculata (L.) Walp] germplasms
Cited by: 26
Author(s): Selamawit Ketema, Bizuayehu Tesfaye, Gemechu Keneni, Berhanu Amsalu Fenta, Ermias Assefa, Nicolas Greliche, Eunice Machuka, Nasser Yao
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pone.0251385
Improving the diagnostic recognition of thoracic endometriosis: Spotlight on a new histo-morphological indicator
Cited by: 1
Author(s): Okechukwu Charles Okafor, N Ezemba, Nnaemeka Thaddeus Onyishi, Kevin Nwabueze Ezike
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0219807
Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm
Cited by: 12
Author(s): Korin Eckstrom, John W. Barlow
Software Mentions: 6
Published: almost 7 years ago
10.1371/journal.pone.0235328
Aptamer based proteomic pilot study reveals a urine signature indicative of pediatric urinary tract infections
Cited by: 10
Author(s): Liang Dong, Joshua R. Watson, Sha Cao, Samuel Arregui, Vijay Saxena, John Ketz, Abduselam K. Awol, Daniel M. Cohen, Jeffrey M. Caterino, David S. Hains, Andrew L. Schwaderer
Software Mentions: 6
Published: about 6 years ago
10.1371/journal.pone.0254829
Tumor infiltrating lymphocytes associated competitive endogenous RNA networks as predictors of outcome in hepatic carcinoma based on WGCNA analysis
Cited by: 1
Author(s): Ying He, Xu Rui, Li Peng, Xiaoyu Hu
Software Mentions: 6
Published: about 5 years ago
10.1038/s41423-021-00647-2
The microbiota is dispensable for the early stages of peripheral regulatory T cell induction within mesenteric lymph nodes
Cited by: 16
Author(s): Carolin Wiechers, Mangge Zou, Eric Galvez, Michael Beckstette, Maria F. Ebel, Till Strowig, Jochen Huehn, Joern Pezoldt
Software Mentions: 6
Published: over 5 years ago
10.1016/j.celrep.2019.06.039
Acute Iron Deprivation Reprograms Human Macrophage Metabolism and Reduces Inflammation In Vivo
Cited by: 67
Author(s): Marie Pereira, Tai‐Di Chen, Norzawani Buang, Antoni Olona, Jeong‐Hun Ko, Maria Prendecki, Ana S.H. Costa, Efterpi Nikitopoulou, Laura Tronci, Charles D. Pusey, H. Terence Cook, Stephen P. McAdoo, Christian Frezza, Jacques Behmoaras
Software Mentions: 6
Published: about 7 years ago
10.1016/j.celrep.2019.06.046
Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry
Cited by: 68
Author(s): Pavel Bouchal, Olga T. Schubert, Jakub Faktor, Lenka Čápková, Hana Imrichová, Karolína Zoufalová, Vendula Páralová, Roman Hrstka, Yansheng Liu, H. Alexander Ebhardt, Eva Budínská, Rudolf Nenutil, Ruedi Aebersold
Software Mentions: 6
Published: about 7 years ago
10.1016/j.celrep.2019.12.019
Neuroinflammation-Associated Aspecific Manipulation of Mouse Predator Fear by Toxoplasma gondii
Cited by: 81
Author(s): Madlaina Boillat, Pierre‐Mehdi Hammoudi, Sunil Kumar Dogga, Stéphane Pagès, Maged Goubran, Iván Rodríguez, Dominique Soldati‐Favre
Software Mentions: 6
Published: over 6 years ago
10.1016/j.celrep.2021.109362
Nutritional regulation of oligodendrocyte differentiation regulates perineuronal net remodeling in the median eminence
Cited by: 29
Author(s): Sara Kohnke, Sophie Buller, Danaé Nuzzaci, Katherine Ridley, Brian Lam, Helena Pivoňková, Marie A. Bentsen, Kimberly M. Alonge, Chao Zhao, John Tadross, Staffan Holmqvist, Takahiro Shimizu, Hannah A. Hathaway, Hui‐Liang Li, Wendy B. Macklin, Michael W. Schwartz, William D. Richardson, Giles S.H. Yeo, R. J. M. Franklin, Ragnhildur Thóra Káradóttir, David H. Rowitch, Clémence Blouet
Software Mentions: 6
Published: about 5 years ago
10.1016/j.xcrm.2021.100267
Cabozantinib and dasatinib synergize to induce tumor regression in non-clear cell renal cell carcinoma
Cited by: 2
Author(s): Hui Wen Lue, Daniel S. Derrick, Soumya Rao, Ahna Van Gaest, Larry C. Cheng, Jennifer Podolak, Samantha Lawson, Changhui Xue, Devin Garg, Ralph E. White, Christopher W. Ryan, Justin M. Drake, Anna Ritz, Laura M. Heiser, George V. Thomas
Software Mentions: 6
Published: over 5 years ago
10.1016/j.stem.2021.04.031
Naive stem cell blastocyst model captures human embryo lineage segregation
Cited by: 139
Author(s): Akira Yanagida, Daniel Spindlow, Jennifer Nichols, Anish Dattani, Austin Smith, Ge Guo
Software Mentions: 6
Published: about 5 years ago
10.3390/cells8060517
Fecal Microbiota Transplantation Controls Murine Chronic Intestinal Inflammation by Modulating Immune Cell Functions and Gut Microbiota Composition
Cited by: 46
Author(s): Claudia Burrello, Maria Rita Giuffrè, Angeli Dominique Macandog, Angélica Díaz‐Basabe, Fulvia Milena Cribiù, Gianluca Lopez, Francesca Borgo, Luigi Nezi, Flavio Caprioli, Maurizio Vecchi, Federica Facciotti
Software Mentions: 6
Published: over 7 years ago
10.3390/cells10030644
Highly Species-Specific Foliar Metabolomes of Diverse Woody Species and Relationships with the Leaf Economics Spectrum
Cited by: 7
Author(s): Rabea Schweiger, Eva Castells, Luca Da Sois, Jordi Martínez‐Vilalta, Caroline Müller
Software Mentions: 6
Published: over 5 years ago
10.3390/cells10061459
A Distinct Faecal Microbiota and Metabolite Profile Linked to Bowel Habits in Patients with Irritable Bowel Syndrome
Cited by: 19
Author(s): Bani Ahluwalia, Cristina Iribarren, Maria K. Magnusson, Johanna Sundin, Egbert Clevers, Otto Savolainen, Alastair B. Ross, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 6
Published: about 5 years ago
10.3390/cells10040921
Sex-Biased lncRNA Signature in Fetal Growth Restriction (FGR)
Cited by: 2
Author(s): Aleksandra Lipka, J Jastrzebski, Łukasz Paukszto, Karol G Makowczenko, Elżbieta Łopieńska–Biernat, Marek Gowkielewicz, Ewa Lepiarczyk, Marta Wiszpolska, Mariusz Majewski, Marta Majewska
Software Mentions: 6
Published: over 5 years ago
10.3390/cells9071571
Boosting the Intra-Articular Efficacy of Low Dose Corticosteroid through a Biopolymeric Matrix: An In Vivo Model of Osteoarthritis
Cited by: 12
Author(s): Matilde Tschon, Francesca Salamanna, Lúcia Martini, G. Giavaresi, Luca Lorenzini, Laura Calzà, Milena Fini
Software Mentions: 6
Published: about 6 years ago
10.1007/s12311-019-01029-1
The Effect of Cerebellar tDCS on Sequential Motor Response Selection
Cited by: 15
Author(s): Bryant J. Jongkees, Maarten A. Immink, Olga D. Boer, Fatemeh Yavari, Michael A. Nitsche, Lorenza S. Colzato
Software Mentions: 6
Published: over 7 years ago
10.1038/s42003-021-02057-6
Inhibition of a nutritional endosymbiont by glyphosate abolishes mutualistic benefit on cuticle synthesis in Oryzaephilus surinamensis
Cited by: 19
Author(s): Julian Simon Thilo Kiefer, Suvdanselengee Batsukh, Eugen Bauer, Bin Hirota, Benjamin Weiß, Jürgen C. Wierz, Takema Fukatsu, Martin Kaltenpoth, Tobias Engl
Software Mentions: 6
Published: over 5 years ago
10.1093/conphys/cow067
Unusual aerobic performance at high temperatures in juvenile Chinook salmon,<i>Oncorhynchus tshawytscha</i>
Cited by: 41
Author(s): Jamilynn B. Poletto, Dennis E. Cocherell, Sarah E. Baird, Trinh X. Nguyen, Valentina Cabrera-Stagno, Anthony P. Farrell, Nann A. Fangue
Software Mentions: 6
Published: over 9 years ago
10.1093/conphys/coab033
Using hair cortisol analysis to understand the biological factors that affect black-footed ferret (Mustela nigripes) stress physiology
Cited by: 0
Author(s): Rachel M. Santymire, Nida Ali, Paul Marinari, Travis M. Livieri
Software Mentions: 6
Published: over 5 years ago
10.1093/conphys/coaa034
Does a cannibal feeding strategy impart differential metabolic performance in young burbot (Lota lota maculosa)?
Cited by: 0
Author(s): Amanda J. Frazier, Nathan R. Jensen, Shawn P. Young, Anne E. Todgham
Software Mentions: 6
Published: over 6 years ago
10.1093/conphys/coaa046
Heat, health and hatchlings: associations of in situ nest temperatures with morphological and physiological characteristics of loggerhead sea turtle hatchlings from Florida
Cited by: 19
Author(s): Kelsey Alexandra Fleming, Justin R. Perrault, Nicole I. Stacy, Christina M. Coppenrath, Alison M. Gainsbury
Software Mentions: 6
Published: over 6 years ago
10.1093/conphys/coaa001
Stoichiometric and stable isotope ratios of wild lizards in an urban landscape vary with reproduction, physiology, space and time
Cited by: 7
Author(s): Andrew M. Durso, Geoffrey D. Smith, Spencer B. Hudson, Susannah S. French
Software Mentions: 6
Published: over 6 years ago
10.1016/j.cortex.2018.02.009
Probing the role of the vestibular system in motivation and reward-based attention
Cited by: 14
Author(s): Elvio Blini, Caroline Tilikete, Alessandro Farnè, Fadila Hadj-Bouziane
Software Mentions: 6
Published: about 8 years ago
10.1186/s13054-019-2701-5
Impact of acyclovir use on survival of patients with ventilator-associated pneumonia and high load herpes simplex virus replication
Cited by: 38
Author(s): Lukas Schuierer, Michael Gebhard, Hans-Georg Ruf, Ulrich Jaschinski, Thomas M. Berghaus, Michael Wittmann, Georg Braun, Dirk H. Busch, Reinhard Hoffmann
Software Mentions: 6
Published: over 6 years ago
10.1016/j.cub.2020.11.013
When Natural Behavior Engages Working Memory
Cited by: 45
Author(s): Dejan Draschkow, Melvin Kallmayer, Anna C. Nobre
Software Mentions: 6
Published: over 5 years ago
10.1016/j.cub.2020.05.007
The Evolution of Mass Cell Suicide in Bacterial Warfare
Cited by: 30
Author(s): Elisa T. Granato, Kevin R. Foster
Software Mentions: 6
Published: about 6 years ago
10.1016/j.dib.2019.104444
Data-based investigation on the performance of an independent gas turbine for electricity generation using real power measurements and other closely related parameters
Cited by: 1
Author(s): Ayodele Benjamin Esan, Vincent Ebhohime Ehiaguina, C. O. A. Awosope, Lanre Olatomiwa, Dickson Egbune
Software Mentions: 6
Published: almost 7 years ago
10.1016/j.dib.2020.106424
An exploratory assessment of a multidimensional healthcare and economic data on COVID-19 in Nigeria
Cited by: 7
Author(s): Ezekiel Ogundepo, Joseph Bamidele Awotunde, Olubayo Adekanmbi, Olalekan Akinsande, Oluwatobi Banjo, Emeka Ogbuju, Francisca Oladipo, Olawale Victor Abimbola, Ehizokhale Oseghale, Oluwatobi Babajide
Software Mentions: 6
Published: over 5 years ago
10.1242/dev.195883
The BMP antagonist gremlin 1 contributes to the development of cortical excitatory neurons, motor balance and fear responses
Cited by: 4
Author(s): Mari Ichinose, Nobumi Suzuki, Tongtong Wang, Hiroki Kobayashi, Laura Vrbanac, Joseph Kim Fai Ng, Josephine Wright, Tamsin R.M. Lannagan, Krystyna A. Gieniec, Martin Lewis, Ryosuke Ando, Atsushi Enomoto, Simon Koblar, Paul Q. Thomas, Daniel L. Worthley, Susan L. Woods
Software Mentions: 6
Published: about 5 years ago
10.1242/dev.199604
The combined action of Esrrb and Nr5a2 is essential for murine naïve pluripotency
Cited by: 16
Author(s): Nicola Festuccia, Nick Owens, Almira Chervova, Agnès Dubois, Pablo Navarro
Software Mentions: 6
Published: almost 5 years ago
10.3390/diagnostics11040623
Impact of Chronic Prostatitis on the PI-RADS Score 3: Proposal for the Addition of a Novel Binary Suffix
Cited by: 1
Author(s): Sascha Merat, Theresa Blümlein, Markus Klarhöfer, Dominik Nickel, Gad Singer, Frank G. Zöllner, Stefan O. Schoenberg, Kubik-Huch Ra, Daniel Hausmann, Lukas Hefermehl
Software Mentions: 6
Published: over 5 years ago
10.1080/22221751.2020.1799723
Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells
Cited by: 203
Author(s): Sofia Appelberg, Soham Gupta, Sara Svensson Akusjärvi, Anoop T. Ambikan, Flora Mikaeloff, Elisa Saccon, Ákos Végvári, Rui Benfeitas, Maike Sperk, Marie Ståhlberg, Shuba Krishnan, Kamal Singh, Josef Penninger, Alì Mirazimi, Ujjwal Neogi
Software Mentions: 6
Published: over 6 years ago
10.1038/s41426-018-0069-2
Neurotropism and behavioral changes associated with Zika infection in the vector <i>Aedes aegypti</i>
Cited by: 26
Author(s): Julie Gaburro, Asim Bhatti, Jenni Harper, Isabelle Jeanne, Megan Dearnley, Diane Green, Saeid Nahavandi, Prasad N. Paradkar, Jean‐Bernard Duchemin
Software Mentions: 6
Published: over 8 years ago
10.1080/22221751.2021.1942228
Single-cell immune checkpoint landscape of PBMCs stimulated with <i>Candida albicans</i>
Cited by: 8
Author(s): Wei‐Wei Deng, Zhen Su, Panpan Liang, Yubo Ma, Yufang Liu, Kai Zhang, Yi Zhang, Ting Liang, Jinyan Shao, X. Liu, Wenling Han, Ruoyu Li
Software Mentions: 6
Published: over 5 years ago
10.1038/s41426-018-0204-0
A viral race for primacy: co-infection of a natural pair of low and highly pathogenic H7N7 avian influenza viruses in chickens and embryonated chicken eggs
Cited by: 19
Author(s): Annika Graaf, Reiner Ulrich, Pavlo Maksimov, David Scheibner, Susanne Koethe, Elsayed M. Abdelwhab, Thomas C. Mettenleiter, Martin Beer, Timm Harder
Software Mentions: 6
Published: over 7 years ago
10.1038/s41426-018-0118-x
Comparative genomics of <i>Campylobacter concisus</i>: Analysis of clinical strains reveals genome diversity and pathogenic potential
Cited by: 22
Author(s): Matthew Gemmell, Susan H. Berry, Indrani Mukhopadhya, Richard Hansen, Hans Linde Nielsen, Mona Bajaj-Elliott, Henrik Nielsen, Georgina L. Hold
Software Mentions: 6
Published: about 8 years ago
10.1210/en.2019-00165
Search for Early Pancreatic Cancer Blood Biomarkers in Five European Prospective Population Biobanks Using Metabolomics
Cited by: 18
Author(s): Jesse Fest, Lisanne S Vijfhuizen, Jelle J. Goeman, Olga Veth, Anni Joensuu, Markus Perola, Satu Männistö, Eivind Ness-Jensen, Kristian Hveem, Toomas Haller, Neeme Tõnisson, Kairit Mikkel, Andres Metspalu, Cornelia M. van Duijn, M. Arfan Ikram, Bruno H. Ch. Stricker, Rikje Ruiter, Casper H.J. van Eijck, Gert‐Jan B. van Ommen, Peter A.C. ’t Hoen
Software Mentions: 6
Published: over 7 years ago
10.1017/S0950268821000510
Epidemiology and transmission characteristics of early COVID-19 cases, 20 January–19 March 2020, in Bavaria, Germany
Cited by: 10
Author(s): Stefanie Böhm, Tom Woudenberg, D. Chen, Durdica Marosevic, Merle M. Böhmer, Lisa Hansen, Jacco Wallinga, Andreas Sing, Katharina Katz
Software Mentions: 6
Published: over 5 years ago
10.3389/fcell.2021.622021
Identification of Potential ceRNA Network and Patterns of Immune Cell Infiltration in Systemic Sclerosis-Associated Interstitial Lung Disease
Cited by: 6
Author(s): Qiuhong Wu, Yang Liu, Yan Xie, Shixiong Wei, Yi Liu
Software Mentions: 6
Published: about 5 years ago
10.3389/fcell.2020.570107
Characterization of DNA Methylation Patterns and Mining of Epigenetic Markers During Genomic Reprogramming in SCNT Embryos
Cited by: 8
Author(s): Pengbo Cao, Hanshuang Li, Yongchun Zuo, Buhe Nashun
Software Mentions: 6
Published: almost 6 years ago
10.3389/fcell.2021.625212
Clinical Significance of a Novel Tumor Progression-Associated Immune Signature in Colorectal Adenocarcinoma
Cited by: 3
Author(s): Rui Mao, Fan Yang, Wei Zheng, Chang Xu, Qian Liu, Yanjun Liu, Tongtong Zhang
Software Mentions: 6
Published: over 5 years ago
10.3389/fcell.2021.724837
Integrative Analysis of m6A Regulator-Mediated RNA Methylation Modification Patterns and Immune Characteristics in Lupus Nephritis
Cited by: 14
Author(s): Huanhuan Zhao, Shaokang Pan, Jiayu Duan, Fengxun Liu, Guangpu Li, Dongwei Li, Zhangsuo Liu
Software Mentions: 6
Published: almost 5 years ago
10.3389/fcell.2021.664843
Characterization of DNA Methylation and Screening of Epigenetic Markers in Polycystic Ovary Syndrome
Cited by: 9
Author(s): Pengbo Cao, Weihao Yang, Peijun Wang, Xihe Li, Buhe Nashun
Software Mentions: 6
Published: over 5 years ago
10.3389/fgene.2021.657658
Weighted Gene Co-expression Network Analysis Identified a Novel Thirteen-Gene Signature Associated With Progression, Prognosis, and Immune Microenvironment of Colon Adenocarcinoma Patients
Cited by: 2
Author(s): Cangang Zhang, Zhe Zhao, Haibo Li, Shukun Yao, Dongyan Zhao
Software Mentions: 6
Published: about 5 years ago
10.3389/fgene.2021.675260
Aluminum or Low pH – Which Is the Bigger Enemy of Barley? Transcriptome Analysis of Barley Root Meristem Under Al and Low pH Stress
Cited by: 16
Author(s): Miriam Szurman-Zubrzycka, Karolina Chwiałkowska, Magdalena Niemira, Mirosław Kwaśniewski, M. Nawrot, Monika Gajecka, Paul B. Larsen, Iwona Szarejko
Software Mentions: 6
Published: over 5 years ago
10.3389/fmicb.2019.03077
A High-Throughput Interbacterial Competition Screen Identifies ClpAP in Enhancing Recipient Susceptibility to Type VI Secretion System-Mediated Attack by Agrobacterium tumefaciens
Cited by: 12
Author(s): Hsiao‐Han Lin, Manda Yu, Manoj Kumar Sriramoju, Shang-Te Danny Hsu, Chi-Te Liu, Erh‐Min Lai
Software Mentions: 6
Published: over 6 years ago
10.3389/fmicb.2019.01347
Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture
Cited by: 194
Author(s): Chrats Melkonian, Willi Gottstein, Sonja Blasche, Yongkyu Kim, Martin Abel-Kistrup, Hentie Swiegers, Sofie Saerens, Nathalia Edwards, Kiran R. Patil, Bas Teusink, Douwe Molenaar
Software Mentions: 6
Published: about 7 years ago
10.3389/fmicb.2018.01888
Infection-Induced Changes Within the Endocytic Recycling Compartment Suggest a Roadmap of Human Cytomegalovirus Egress
Cited by: 16
Author(s): William L. Close, James Glassbrook, Stephen J. Gurczynski, Philip E. Pellett
Software Mentions: 6
Published: about 8 years ago
10.3389/fmicb.2015.01038
Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, Brazil
Cited by: 10
Author(s): Ana Paula B. Moreira, Pedro Milet Meirelles, Eidy de Oliveira Santos, Gilberto M. Amado‐Filho, Ronaldo B. Francini‐Filho, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 6
Published: almost 11 years ago
10.3389/fmicb.2018.02533
Cervicovaginal Fungi and Bacteria Associated With Cervical Intraepithelial Neoplasia and High-Risk Human Papillomavirus Infections in a Hispanic Population
Cited by: 57
Author(s): Filipa Godoy-Vitorino, Josefina Romaguera, Chunyu Zhao, Daniela Vargas-Robles, Gilmary Ortiz-Morales, Frances Vázquez-Sánchez, María M. Sánchez-Vázquez, Manuel de la Garza-Casillas, Magaly Martínez‐Ferrer, James R. White, Kyle Bittinger, Maria Gloria Domínguez-Bello, Martin J. Blaser
Software Mentions: 6
Published: almost 8 years ago
10.3389/fmicb.2021.633649
Microbial Communities Under Distinct Thermal and Geochemical Regimes in Axial and Off-Axis Sediments of Guaymas Basin
Cited by: 24
Author(s): Andreas Teske, Gunter Wegener, Jeffrey P. Chanton, Dylan White, Barbara J. MacGregor, D. Hoer, Dirk de Beer, Guang‐Chao Zhuang, Matthew Saxton, Samantha B. Joye, D. Lizarralde, S. Adam Soule, S. Emil Ruff
Software Mentions: 6
Published: over 5 years ago
10.3389/fmicb.2021.723682
Establishment of Gut Microbiome During Early Life and Its Relationship With Growth in Endangered Crested Ibis (Nipponia nippon)
Cited by: 13
Author(s): Ying Zhu, Yudong Li, Hai-Qiong Yang, Ke He, Keyi Tang
Software Mentions: 6
Published: about 5 years ago
10.3389/fmicb.2020.586437
Co-infection of Chicken Layers With Histomonas meleagridis and Avian Pathogenic Escherichia coli Is Associated With Dysbiosis, Cecal Colonization and Translocation of the Bacteria From the Gut Lumen
Cited by: 13
Author(s): Mohamed Kamal Abdelhamid, Narciso M. Quijada, Monika Dzieciol, Tamas Hatfaludi, Ivana Bilić, Evelyne Selberherr, Dieter Liebhart, Claudia Heß, Michael Heß, Surya Paudel
Software Mentions: 6
Published: almost 6 years ago
10.3389/fmicb.2020.574361
Multistability and Reversibility of Aerobic Granular Sludge Microbial Communities Upon Changes From Simple to Complex Synthetic Wastewater and Back
Cited by: 16
Author(s): Aline Sondra Adler, Christof Holliger
Software Mentions: 6
Published: almost 6 years ago
10.3389/fmicb.2016.00372
A Combination of Biochar–Mineral Complexes and Compost Improves Soil Bacterial Processes, Soil Quality, and Plant Properties
Cited by: 62
Author(s): Jun Ye, Rui Zhang, Shaun Nielsen, Stephen Joseph, Danfeng Huang, Torsten Thomas
Software Mentions: 6
Published: over 10 years ago
10.3389/fmicb.2020.575625
Plant Genotype Influences Physicochemical Properties of Substrate as Well as Bacterial and Fungal Assemblages in the Rhizosphere of Balsam Poplar
Cited by: 9
Author(s): Karelle Rheault, Denis Lachance, Marie-Josée Morency, Évelyne Thiffault, Marie Guittonny, Nathalie Isabel, Christine Martineau, Armand Séguin
Software Mentions: 6
Published: almost 6 years ago
10.3389/fmolb.2020.582911
Comprehensive Analysis of the Relationships Between Tumor Mutation Burden With Immune Infiltrates in Cervical Cell Carcinoma
Cited by: 9
Author(s): Cankun Zhou, Chaomei Li, Shunqing Peng, Liangcheng Zhou, Huan Li
Software Mentions: 6
Published: almost 6 years ago
10.3389/fmolb.2021.619110
Screening and Identification of Key Common and Specific Genes and Their Prognostic Roles in Different Molecular Subtypes of Breast Cancer
Cited by: 7
Author(s): Na Sun, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Yi Zhang, Fei Han, Xiaowei Qi
Software Mentions: 6
Published: over 5 years ago
10.3389/fnmol.2021.723317
Dynamic Changes in the Levels of Amyloid-β42 Species in the Brain and Periphery of APP/PS1 Mice and Their Significance for Alzheimer’s Disease
Cited by: 13
Author(s): Liding Zhang, Changwen Yang, Yanqing Li, Shiqi Niu, Xiaohan Liang, Zhihong Zhang, Qi Luo, Haiming Luo
Software Mentions: 6
Published: about 5 years ago
10.3389/fninf.2021.678403
FlywheelTools: Data Curation and Manipulation on the Flywheel Platform
Cited by: 5
Author(s): Tinashe M. Tapera, Matthew Cieslak, Max Bertolero, Azeez Adebimpe, Geoffrey K. Aguirre, Ellyn R. Butler, Philip A. Cook, Diego Davila, Mark A. Elliott, Sophia Linguiti, Kristin Murtha, William Tackett, John A. Detre, Theodore D. Satterthwaite
Software Mentions: 6
Published: about 5 years ago
10.3389/fneur.2020.00729
Googling the Lifetime Risk of Stroke Around the World
Cited by: 3
Author(s): Thanh G. Phan, Anisha Haseeb, Richard Beare, Velandai Srikanth, Amanda G Thrift, Henry Ma
Software Mentions: 6
Published: about 6 years ago
10.3389/fneur.2019.00784
Spatial Gradient of Microstructural Changes in Normal-Appearing White Matter in Tracts Affected by White Matter Hyperintensities in Older Age
Cited by: 23
Author(s): Susana Muñoz Maniega, Rozanna Meijboom, Francesca M Chappell, María del C. Valdés Hernández, John M. Starr, Mark E. Bastin, Ian J. Deary, Joanna M. Wardlaw
Software Mentions: 6
Published: about 7 years ago
10.3389/fnins.2021.700253
Machine Learning in Modeling of Mouse Behavior
Cited by: 4
Author(s): Marjan Gharagozloo, Abdelaziz Amrani, Kevin Wittingstall, Andrew Hamilton-Wright, Denis Gris
Software Mentions: 6
Published: almost 5 years ago
10.3389/fnins.2021.644757
The Impacts of Age and Sex in a Mouse Model of Childhood Narcolepsy
Cited by: 10
Author(s): A Coffey, Adam Joyal, Akihiro Yamanaka, Thomas E. Scammell
Software Mentions: 6
Published: over 5 years ago
10.3389/fnins.2017.00363
The Role of the Interplay between Stimulus Type and Timing in Explaining BCI-Illiteracy for Visual P300-Based Brain-Computer Interfaces
Cited by: 12
Author(s): Roberta Carabalona
Software Mentions: 6
Published: about 9 years ago
10.3389/fnut.2019.00045
What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study
Cited by: 135
Author(s): Kimberly A. Lackey, Janet E. Williams, Courtney L. Meehan, Jessica A. Zachek, Elizabeth D. Benda, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela Gindola K, Linda J. Kvist, Gloria E. Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode, Mark A. McGuire, Michelle K. McGuire
Software Mentions: 6
Published: over 7 years ago
10.3389/fonc.2021.721644
CDT1 Is a Novel Prognostic and Predictive Biomarkers for Hepatocellular Carcinoma
Cited by: 14
Author(s): Chenhui Cai, Ying Zhang, Xu Hu, Wenhui Hu, Sizhen Yang, Hao Qiu, Tongwei Chu
Software Mentions: 6
Published: almost 5 years ago
10.3389/fonc.2021.617289
Derivation and Validation of a Prognostic Model for Cancer Dependency Genes Based on CRISPR-Cas9 in Gastric Adenocarcinoma
Cited by: 16
Author(s): Wenjie Zhou, Junqing Li, Xiufen Lu, Fangjie Liu, Tailai An, Xing Xiao, Zi Chong Kuo, Wenhui Wu, Yulong He
Software Mentions: 6
Published: over 5 years ago
10.3389/fonc.2019.00221
Non-coding and Coding Transcriptional Profiles Are Significantly Altered in Pediatric Retinoblastoma Tumors
Cited by: 25
Author(s): Swetha Rajasekaran, Lakshmi Dhevi N. Selvan, Kathleen Dotts, Ranjith Kumar, Pukhraj Rishi, Vikas Khetan, Madhoolika Bisht, Karthikeyan Sivaraman, Subrmanian Krishnakumar, Debashis Sahoo, Moray J. Campbell, Sailaja Elchuri, Wayne Miles
Software Mentions: 6
Published: over 7 years ago
10.3389/fpls.2019.01184
Ramf: An Open-Source R Package for Statistical Analysis and Display of Quantitative Root Colonization by Arbuscular Mycorrhiza Fungi
Cited by: 2
Author(s): Marco Chiapello, Debatosh Das, Caroline Gutjahr
Software Mentions: 6
Published: almost 7 years ago
10.3389/fpls.2020.570001
Experimental Warming Changes Phenology and Shortens Growing Season of the Dominant Invasive Plant Bromus tectorum (Cheatgrass)
Cited by: 10
Author(s): Armin J. Howell, Daniel E. Winkler, Michala L. Phillips, Brandon E. McNellis, Sasha C. Reed
Software Mentions: 6
Published: almost 6 years ago
10.3389/fpsyt.2020.00217
Sex-Specific Differences in Severity of Depressive Symptoms, Heart Rate Variability, and Neurocognitive Profiles of Depressed Young Adults: Exploring Characteristics for Mild Depression
Cited by: 5
Author(s): Jong-Deock Lim, Je Yeon Yun, Yoobin Choi, Seong Hee Choi, Young-Sang Kwon, Hwa Young Lee, Joon Hwan Jang
Software Mentions: 6
Published: over 6 years ago
10.3389/fpsyt.2020.00384
Effectiveness of Open-Ended Psychotherapy Under Clinically Representative Conditions
Cited by: 6
Author(s): Magnus Nordmo, Nils Martin Sønderland, Odd E. Havik, Dag Erik Eilertsen, Jon T. Monsen, Ole André Solbakken
Software Mentions: 6
Published: over 6 years ago
10.3389/fpsyt.2021.697127
Daily-Life Social Experiences as a Potential Mediator of the Relationship Between Parenting and Psychopathology in Adolescence
Cited by: 6
Author(s): Robin Achterhof, Olivia J. Kirtley, Maude Schneider, Ginette Lafit, Noëmi Hagemann, Karlijn Susanna Francisca Maria Hermans, Anu P. Hiekkaranta, Aleksandra Lecei, Inez Myin-Germeys
Software Mentions: 6
Published: about 5 years ago