cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.ppat.1007273

Trichuris muris whey acidic protein induces type 2 protective immunity against whipworm
Cited by: 18
Author(s): Neima Briggs, Junfei Wei, Leroy Versteeg, Bin Zhan, Brian Keegan, Ashish Damania, Jeroen Pollet, Kelly S. Hayes, Coreen M. Beaumier, Christopher A. Seid, Jamie Leong, Richard K. Grencis, María Elena Bottazzi, K. Jagannadha Sastry, Peter J. Hotez
Software Mentions: 6
Published: almost 8 years ago

10.1093/icb/icaa138

Epigenetics of Animal Personality: DNA Methylation Cannot Explain the Heritability of Exploratory Behavior in a Songbird
Cited by: 11
Author(s): Kees van Oers, Bernice Sepers, William Sies, Fleur Gawehns, Koen Verhoeven, Veronika N. Laine
Software Mentions: 6
Published: over 5 years ago

10.1016/j.lanepe.2021.100103

Impact of the COVID-19 pandemic and associated non-pharmaceutical interventions on other notifiable infectious diseases in Germany: An analysis of national surveillance data during week 1–2016 – week 32–2020
Cited by: 86
Author(s): Alexander Ullrich, Madlen Schranz, Ute Rexroth, Osamah Hamouda, Lars Schaade, Michaela Diercke, T. Sonia Boender
Software Mentions: 6
Published: almost 5 years ago

10.1128/mSphere.00454-19

Integrated Meta-omics Reveals a Fungus-Associated Bacteriome and Distinct Functional Pathways in Clostridioides difficile Infection
Cited by: 24
Author(s): David B. Stewart, Justin Wright, Maria Fowler, Christopher J. McLimans, Vasily Tokarev, Isabella Amaniera, Owen Baker, Hoi‐Tong Wong, Jeffrey L. Brabec, Rebecca Drucker, Regina Lamendella
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41392-020-00263-y

Adaptive immune responses to SARS-CoV-2 infection in severe versus mild individuals
Cited by: 127
Author(s): Fan Zhang, Rui Gan, Ziqi Zhen, Xiaoli Hu, Xiang Li, Fengxia Zhou, Ying Liu, Chuangeng Chen, Shuangyu Xie, Bailing Zhang, Xiaoke Wu, Zhiwei Huang
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2015.01038

Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, Brazil
Cited by: 10
Author(s): Ana Paula B. Moreira, Pedro Milet Meirelles, Eidy de Oliveira Santos, Gilberto M. Amado‐Filho, Ronaldo B. Francini‐Filho, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 6
Published: over 10 years ago

10.1186/s12920-021-00989-w

Identification of key genes in calcific aortic valve disease via weighted gene co-expression network analysis
Cited by: 7
Author(s): Jin-Yu Sun, Hua Yang, Hui Shen, Qiang Qu, Junyan Kan, Xiangqing Kong, Wei Sun, Yue-Yun Shen
Software Mentions: 6
Published: about 5 years ago

10.1155/2020/8833438

Systematic Investigation of mRNA N6-Methyladenosine Machinery in Primary Prostate Cancer
Cited by: 7
Author(s): Mei Jiang, Yu‐Chuan Lu, Dongxia Duan, Hongxiang Wang, Gaoya Man, Ching Kang, Kesaier Abulimiti, Yao Li
Software Mentions: 6
Published: over 5 years ago

10.1186/1476-072X-14-4

Testing for clustering at many ranges inflates family-wise error rate (FWE)
Cited by: 3
Author(s): Matthew Shane Loop, Leslie A. McClure
Software Mentions: 6
Published: over 11 years ago

10.3390/ijms22094531

Knockdown of the Ribosomal Protein eL38 in HEK293 Cells Changes the Translational Efficiency of Specific Genes
Cited by: 4
Author(s): Alexander V. Gopanenko, Alena V. Kolobova, Alexey E. Tupikin, Мarsel R. Kabilov, Alexey A. Malygin, Г. Г. Карпова
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2018.02533

Cervicovaginal Fungi and Bacteria Associated With Cervical Intraepithelial Neoplasia and High-Risk Human Papillomavirus Infections in a Hispanic Population
Cited by: 57
Author(s): Filipa Godoy-Vitorino, Josefina Romaguera, Chunyu Zhao, Daniela Vargas-Robles, Gilmary Ortiz-Morales, Frances Vázquez-Sánchez, María M. Sánchez-Vázquez, Manuel de la Garza-Casillas, Magaly Martínez‐Ferrer, James R. White, Kyle Bittinger, Maria Gloria Domínguez-Bello, Martin J. Blaser
Software Mentions: 6
Published: over 7 years ago

10.1155/2020/8974793

Comprehensive Analysis of Tumor-Infiltrating Immune Cells and Relevant Therapeutic Strategy in Esophageal Cancer
Cited by: 14
Author(s): Guangrong Lu, Liping Chen, Shengjie Wu, Yuao Feng, Tiesu Lin
Software Mentions: 6
Published: about 6 years ago

10.3390/insects12070631

Endophytic Isaria javanica pf185 Persists after Spraying and Controls Myzus persicae (Hemiptera: Aphididae) and Colletotrichum acutatum (Glomerellales: Glomerellaceae) in Pepper
Cited by: 2
Author(s): Roland Bocco, Moran Lee, Dayeon Kim, Sangwoo Ahn, Jin-Woo Park, Sang-Yeob Lee, Jihee Han
Software Mentions: 6
Published: almost 5 years ago

10.1155/2020/8841859

Establishment and Validation of a Prognostic Risk Model for Autophagy-Related Genes in Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Wenkai Han, Xiaoyan Xu, Kai Che, Guofeng Ma, Danxia Li, Mingxin Zhang, Wei Jiao, Haitao Niu
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/6680883

MXRA5 Is a Novel Immune-Related Biomarker That Predicts Poor Prognosis in Glioma
Cited by: 8
Author(s): Jinzhang Sun, Jinhao Zhang, Jia-Bo Li, Feng Yuan, Luqing Tong, Xu-Ya Wang, Lulu Chen, Xiaoguang Fan, Yiming Zhang, Xiao Ren, Chen Zhang, Shukun Yu, Xuejun Yang
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.ppat.1007187

Epidemiological significance of dengue virus genetic variation in mosquito infection dynamics
Cited by: 39
Author(s): Albin Fontaine, Sébastian Lequime, Isabelle Moltini-Conclois, Davy Jiolle, Isabelle Leparc-Goffart, Robert C. Reiner, Louis Lambrechts
Software Mentions: 6
Published: almost 8 years ago

10.3389/fmicb.2021.633649

Microbial Communities Under Distinct Thermal and Geochemical Regimes in Axial and Off-Axis Sediments of Guaymas Basin
Cited by: 24
Author(s): Andreas Teske, Gunter Wegener, Jeffrey P. Chanton, Dylan White, Barbara J. MacGregor, D. Hoer, Dirk de Beer, Guang‐Chao Zhuang, Matthew Saxton, Samantha B. Joye, D. Lizarralde, S. Adam Soule, S. Emil Ruff
Software Mentions: 6
Published: over 5 years ago

10.1128/mBio.00170-21

Viral Rebound Kinetics Correlate with Distinct HIV Antibody Features
Cited by: 7
Author(s): Yannic C. Bartsch, Carolin Loos, Evan Rossignol, Jesse Fajnzylber, Dansu Yuan, Anchalee Avihingsanon, Sasiwimol Ubolyam, Thidarat Jupimai, Bernard Hirschel, Jintanat Ananworanich, Douglas A. Lauffenburger, Jonathan Z. Li, Galit Alter, Boris Jülg
Software Mentions: 6
Published: about 5 years ago

10.1186/s13059-018-1407-3

Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads
Cited by: 90
Author(s): Yohei Sasagawa, Hiroki Danno, Hitomi Takada, Masashi Ebisawa, Kaori Tanaka, Tetsutaro Hayashi, Akira Kurisaki, Itoshi Nikaido
Software Mentions: 6
Published: over 8 years ago

10.3389/fonc.2021.634841

miRNA-Based Signature Associated With Tumor Mutational Burden in Colon Adenocarcinoma
Cited by: 7
Author(s): Weijie Xue, Yixiu Wang, Yuwei Xie, Caifeng Yang, Zhiqi Gong, Chunyang Guan, Chuanliang Wei, Chunhui Zhu, Zhaojian Niu
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13059-017-1374-0

Epigenetic supersimilarity of monozygotic twin pairs
Cited by: 76
Author(s): Timothy E. Van Baak, Cristian Coarfa, Pierre Antoine Dugué, Giovanni Fiorito, Eleonora Laritsky, Maria S. Baker, Noah J. Kessler, Jianrong Dong, Jack D. Duryea, Matt J. Silver, Ayden Saffari, Andrew M. Prentice, Sophie E. Moore, Akram Ghantous, Michael N. Routledge, Yun Gong, Zdenko Herceg, Paolo Víneis, Gianluca Severi, John L. Hopper, Melissa C. Southey, Graham G. Giles, Roger L. Milne, Robert A. Waterland
Software Mentions: 6
Published: over 8 years ago

10.1242/dmm.049012

Transcriptomic analyses of gastrulation-stage mouse embryos with differential susceptibility to alcohol
Cited by: 16
Author(s): Karen E. Boschen, Travis Ptacek, Matthew E. Berginski, Jeremy M. Simon, Scott E. Parnell
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.07597

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems
Cited by: 184
Author(s): Rubén Rellán‐Álvarez, Guillaume Lobet, Heike Lindner, Pierre-Luc Pradier, José Sebastián, Muh-Ching Yee, Yu Geng, Charlotte Trontin, Therese LaRue, Amanda Schrager‐Lavelle, Cara H. Haney, Rita Nieu, Julin Maloof, John P. Vogel, José R. Dinneny
Software Mentions: 6
Published: almost 11 years ago

10.3389/fmicb.2019.02651

Field Relevant Variation in Ambient Temperature Modifies Density-Dependent Establishment of Plasmodium falciparum Gametocytes in Mosquitoes
Cited by: 12
Author(s): Ashutosh K. Pathak, Justine C. Shiau, Matthew B. Thomas, Courtney C. Murdock
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0254829

Tumor infiltrating lymphocytes associated competitive endogenous RNA networks as predictors of outcome in hepatic carcinoma based on WGCNA analysis
Cited by: 1
Author(s): Ying He, Xu Rui, Li Peng, Xiaoyu Hu
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.ppat.1006967

KSHV induces immunoglobulin rearrangements in mature B lymphocytes
Cited by: 28
Author(s): Jennifer Totonchy, Jessica M. Osborn, Amy Chadburn, Romina Nabiee, Lissenya B. Argueta, Geoffrey Mikita, Ethel Cesarman
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0223600

Suppression treatment differentially influences the microbial community and the occurrence of broad host range plasmids in the rhizosphere of the model cover crop Avena sativa L.
Cited by: 9
Author(s): Marco Allegrini, Emma Laura Alfaro Gómez, Kornelia Smalla, María Celina Zabaloy
Software Mentions: 6
Published: over 6 years ago

10.1186/s12866-019-1664-7

Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle
Cited by: 10
Author(s): Isaiah Paolo A. Lee, Cheryl P. Andam
Software Mentions: 6
Published: over 6 years ago

10.1038/srep34220

Widespread DNA hypomethylation and differential gene expression in Turner syndrome
Cited by: 99
Author(s): Christian Trolle, Morten Muhlig Nielsen, Anne Skakkebæk, Philippe Lamy, Søren Vang, Jakob Hedegaard, Iver Nordentoft, Torben F. Ørntoft, Jakob Skou Pedersen, Claus Højbjerg Gravholt
Software Mentions: 6
Published: over 9 years ago

10.3390/microorganisms8101566

The Prokaryotic Microbiome of Acropora digitifera is Stable under Short-Term Artificial Light Pollution
Cited by: 6
Author(s): Jake Ivan P. Baquiran, Michael Angelou L. Nada, Celine Luisa D. Campos, Sherry Lyn G. Sayco, Patrick C. Cabaitan, Yaeli Rosenberg, Inbal Ayalon, Oren Levy, Cecilia Conaco
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms20061321

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling
Cited by: 14
Author(s): Gesche K. Gerresheim, Jochen Bathke, Audrey M. Michel, Dmitry E. Andreev, Lyudmila Shalamova, Oliver Roßbach, Pan Hu, Dieter Glebe, Markus Fricke, Manja Marz, Alexander Goesmann, Stephen J Kiniry, Pavel V. Baranov, Ivan N. Shatsky, Michael Niepmann
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-017-08844-8

Scale-dependent changes in the functional diversity of macrophytes in subtropical freshwater lakes in south China
Cited by: 16
Author(s): Hui Fu, Jun Zhong, Shaowen Fang, Jianmin Hu, Caixia Guo, Qian Lei, Guixiang Yuan, Taotao Dai, Zhongqiang Li, Meng Zhang, Wei Li, Jun Xu, Ting Cao
Software Mentions: 6
Published: almost 9 years ago

10.7554/eLife.60083

Arrayed CRISPRi and quantitative imaging describe the morphotypic landscape of essential mycobacterial genes
Cited by: 38
Author(s): Timothy J. de Wet, Kirstin Winkler, Musa M. Mhlanga, Valerie Mizrahi, Digby F. Warner
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2021.723682

Establishment of Gut Microbiome During Early Life and Its Relationship With Growth in Endangered Crested Ibis (Nipponia nippon)
Cited by: 13
Author(s): Ying Zhu, Yudong Li, Hai-Qiong Yang, Ke He, Keyi Tang
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13059-014-0459-2

Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi
Cited by: 106
Author(s): Xiaofang Jiang, Ashley Peery, Andrew Brantley Hall, Atashi Sharma, Xiaoguang Chen, Robert M. Waterhouse, Aleksey Komissarov, Michelle M. Riehle, Yogesh S. Shouche, Maria V. Sharakhova, Daniel Lawson, Nazzy Pakpour, Peter Arensburger, Victoria L M Davidson, Karin Eiglmeier, Scott J. Emrich, Phillip George, Ryan Kennedy, Shrinivasrao P. Mane, G. Maslen, Chioma Oringanje, Yumin Qi, Robert E. Settlage, Marta Tojo, José M. C. Tubío, Maria Unger, Bo Wang, Kenneth D. Vernick, José M. C. Ribeiro, Anthony A. James, Kristin Michel, Michael A. Riehle, Shirley Luckhart, Igor V. Sharakhov, Zhijian Tu
Software Mentions: 6
Published: almost 12 years ago

10.3389/fmicb.2018.01888

Infection-Induced Changes Within the Endocytic Recycling Compartment Suggest a Roadmap of Human Cytomegalovirus Egress
Cited by: 16
Author(s): William L. Close, James Glassbrook, Stephen J. Gurczynski, Philip E. Pellett
Software Mentions: 6
Published: almost 8 years ago

10.3389/fmicb.2020.586437

Co-infection of Chicken Layers With Histomonas meleagridis and Avian Pathogenic Escherichia coli Is Associated With Dysbiosis, Cecal Colonization and Translocation of the Bacteria From the Gut Lumen
Cited by: 13
Author(s): Mohamed Kamal Abdelhamid, Narciso M. Quijada, Monika Dzieciol, Tamas Hatfaludi, Ivana Bilić, Evelyne Selberherr, Dieter Liebhart, Claudia Heß, Michael Heß, Surya Paudel
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.574361

Multistability and Reversibility of Aerobic Granular Sludge Microbial Communities Upon Changes From Simple to Complex Synthetic Wastewater and Back
Cited by: 16
Author(s): Aline Sondra Adler, Christof Holliger
Software Mentions: 6
Published: over 5 years ago

10.1186/s12891-021-04400-8

Predicting the duration of sickness absence due to knee osteoarthritis: a prognostic model developed in a population-based cohort in Sweden
Cited by: 2
Author(s): Johanna Holm, Paolo Frumento, Gino Almondo, Katalin Gémes, Matteo Bottai, Kristina Alexanderson, Emilie Friberg, Kristin Farrants
Software Mentions: 6
Published: almost 5 years ago

10.1007/s10710-018-9328-1

Visualising the global structure of search landscapes: genetic improvement as a case study
Cited by: 12
Author(s): Nadarajen Veerapen, Gabriela Ochoa
Software Mentions: 6
Published: almost 8 years ago

10.3389/fonc.2021.639085

Risk Models for Advanced Melanoma Patients Under Anti-PD-1 Monotherapy—Ad hoc Analyses of Pooled Data From Two Clinical Trials
Cited by: 5
Author(s): Xue Bai, Jie Dai, Caili Li, Chuanliang Cui, Lili Mao, Xiaoting Wei, Xinan Sheng, Zhihong Chen, Xieqiao Yan, Bixia Tang, Bin Lian, Xuan Wang, Li Zhou, Siming Li, Yan Kong, Zhonghui Qi, Huayan Xu, Rong Duan, Jun Guo, Lu Si
Software Mentions: 6
Published: about 5 years ago

10.1038/s41436-018-0337-5

Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions
Cited by: 65
Author(s): Sulev Reisberg, Kristi Krebs, Maarja Lepamets, Mart Kals, Reedik Mägi, Kristjan Metsalu, Volker M. Lauschke, Jaak Vilo, Lili Milani
Software Mentions: 6
Published: about 7 years ago

10.15252/embj.2019102808

HNF1A recruits KDM6A to activate differentiated acinar cell programs that suppress pancreatic cancer
Cited by: 36
Author(s): Jorge Ferrer, Edgar Bernardo, Anthony Beucher, Miguel A. Maestro, Natalia del Pozo, I.R. Hernández Millán, Lena Haeberle, Martin Schlensog, Sami-Alexander Safi, Wolfram Trudo Knoefel, Vanessa Grau, Matías De Vas, Karl B. Shpargel, Eva C. Vaquero, Terry Magnuson, Sagrario Ortega, Irene Espósito, Francisco X. Real, Jorge Ferrer
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2016.00372

A Combination of Biochar–Mineral Complexes and Compost Improves Soil Bacterial Processes, Soil Quality, and Plant Properties
Cited by: 62
Author(s): Jun Ye, Rui Zhang, Shaun Nielsen, Stephen Joseph, Danfeng Huang, Torsten Thomas
Software Mentions: 6
Published: about 10 years ago

10.1128/mSphere.00535-21

A Comprehensive Map of Mycobacterium tuberculosis Complex Regions of Difference
Cited by: 11
Author(s): Dmitry Bespiatykh, Julia Bespyatykh, Igor Mokrousov, Egor Shitikov
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2017.01011

Diversity and Composition of Sulfate-Reducing Microbial Communities Based on Genomic DNA and RNA Transcription in Production Water of High Temperature and Corrosive Oil Reservoir
Cited by: 45
Author(s): Xiaoxiao Li, Jinfeng Liu, Lei Zhou, Serge Maurice Mbadinga, Shi‐Zhong Yang, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 6
Published: about 9 years ago

10.3389/fmicb.2019.01347

Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture
Cited by: 194
Author(s): Chrats Melkonian, Willi Gottstein, Sonja Blasche, Yongkyu Kim, Martin Abel-Kistrup, Hentie Swiegers, Sofie Saerens, Nathalia Edwards, Kiran R. Patil, Bas Teusink, Douwe Molenaar
Software Mentions: 6
Published: almost 7 years ago

10.3390/pathogens9121057

Differential Mortality and High Viral Load in Naive Pacific Oyster Families Exposed to OsHV-1 Suggests Tolerance Rather than Resistance to Infection
Cited by: 7
Author(s): M. Victoria Agnew, Carolyn S. Friedman, C. Langdon, Konstantin Divilov, Blaine Schoolfield, Benjamín Morga, Lionel Dégremont, Arun K. Dhar, Peter D. Kirkland, Brett R. Dumbauld, Colleen A. Burge
Software Mentions: 6
Published: over 5 years ago

10.3390/insects11110746

Mutual and Opposing Responses of Carabid Beetles and Predatory Wasps to Local and Landscape Factors in Vineyards
Cited by: 7
Author(s): Deniz Uzman, Martin H. Entling, Ilona Leyer, Annette Reineke
Software Mentions: 6
Published: over 5 years ago

10.1002/evl3.254

Ageing as “early-life inertia”: Disentangling life-history trade-offs along a lifetime of an individual
Cited by: 9
Author(s): Hanne Carlsson, Edward Ivimey‐Cook, Elizabeth M. L. Duxbury, Nathan Edden, Kris Sales, Alexei A. Maklakov
Software Mentions: 6
Published: over 4 years ago

10.12688/f1000research.17149.2

Hub genes in a pan-cancer co-expression network show potential for predicting drug responses
Cited by: 0
Author(s): Francisco Azuaje, Tony Kaoma, Céline Jeanty, Petr V. Nazarov, Arnaud Muller, Sang Yoon Kim, Gunnar Dittmar, Anna Golebiewska, Simone P. Niclou
Software Mentions: 6
Published: over 7 years ago

10.15252/emmm.202012881

Fragmentation patterns and personalized sequencing of cell‐free DNA in urine and plasma of glioma patients
Cited by: 47
Author(s): Florent Moulière, Christopher G. Smith, Katrin Heider, Jing Su, Ymke van der Pol, Mark Thompson, James A. Morris, Jonathan C. M. Wan, Dineika Chandrananda, James Hadfield, Marta Grzelak, Irena Hudecova, Dominique‐Laurent Couturier, Wendy N. Cooper, Hui Zhao, Davina Gale, Matthew Eldridge, Colin Watts, Kevin M. Brindle, Nitzan Rosenfeld, Richard Mair
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2019.03077

A High-Throughput Interbacterial Competition Screen Identifies ClpAP in Enhancing Recipient Susceptibility to Type VI Secretion System-Mediated Attack by Agrobacterium tumefaciens
Cited by: 12
Author(s): Hsiao‐Han Lin, Manda Yu, Manoj Kumar Sriramoju, Shang-Te Danny Hsu, Chi-Te Liu, Erh‐Min Lai
Software Mentions: 6
Published: over 6 years ago

10.1038/s41423-021-00647-2

The microbiota is dispensable for the early stages of peripheral regulatory T cell induction within mesenteric lymph nodes
Cited by: 16
Author(s): Carolin Wiechers, Mangge Zou, Eric Galvez, Michael Beckstette, Maria F. Ebel, Till Strowig, Jochen Huehn, Joern Pezoldt
Software Mentions: 6
Published: about 5 years ago

10.3390/genes12091300

Mitochondrial Genetic Heterogeneity in Leber’s Hereditary Optic Neuropathy: Original Study with Meta-Analysis
Cited by: 7
Author(s): Rajan Kumar Jha, Chhavi Dawar, Qurratulain Hasan, Akhilesh Pujar, Gaurav Gupta, Venugopalan Y Vishnu, Ramesh Kekunnaya, Kumarasamy Thangaraj
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2020.565626

A Near-Chromosome Level Genome Assembly of Anopheles stephensi
Cited by: 14
Author(s): Afiya Razia Chida, Samathmika Ravi, Suvratha Jayaprasad, Kiran Paul, Jaysmita Saha, Chinjusha Suresh, Saurabh Whadgar, Naveen Kumar, Raksha Rao K, Chaitali Ghosh, Bibha Choudhary, Suresh Subramani, Subhashini Srinivasan
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0211855

Are hummingbirds generalists or specialists? Using network analysis to explore the mechanisms influencing their interaction with nectar resources
Cited by: 26
Author(s): Claudia I. Rodríguez-Flores, Juan Francisco Ornelas, Susan M. Wethington, María del Coro Arizmendi
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.ppat.1003450

Novel Immunomodulators from Hard Ticks Selectively Reprogramme Human Dendritic Cell Responses
Cited by: 64
Author(s): Stephen G. Preston, Juraj Majtán, Chrisoula Kouremenou, Oliwia Ryśnik, Lena Fatou Burger, Alejandro Cabezas-Cruz, Maylin Chiong Guzman, Miles A. Nunn, Guido C. Paesen, Patricia A. Nuttall, Jonathan M. Austyn
Software Mentions: 6
Published: almost 13 years ago

10.3389/fpsyg.2021.712647

Acoustic-Lexical Characteristics of Child-Directed Speech Between 7 and 24 Months and Their Impact on Toddlers' Phonological Processing
Cited by: 5
Author(s): Margaret Cychosz, Jan Edwards, Nan Bernstein Ratner, Catherine Torrington Eaton, Rochelle S. Newman
Software Mentions: 6
Published: over 4 years ago

10.3389/fpsyg.2018.00991

The Movement-Image Compatibility Effect: Embodiment Theory Interpretations of Motor Resonance With Digitized Photographs, Drawings, and Paintings
Cited by: 2
Author(s): Mark-Oliver Casper, John A. Nyakatura, Anja Pawel, Christina B. Reimer, Torsten Schubert, Marion Lauschke
Software Mentions: 6
Published: about 8 years ago

10.3390/insects11080517

The Gut–Brain–Microbiome Axis in Bumble Bees
Cited by: 8
Author(s): Laura Leger, Quinn S. McFrederick
Software Mentions: 6
Published: almost 6 years ago

10.1128/mSystems.00043-17

The Skin Microbiome of Cohabiting Couples
Cited by: 86
Author(s): Ashley A. Ross, Andrew C. Doxey, Josh D. Neufeld
Software Mentions: 6
Published: almost 9 years ago

10.3389/fgene.2021.571231

Identification and Analysis of Potential Key Genes Associated With Hepatocellular Carcinoma Based on Integrated Bioinformatics Methods
Cited by: 21
Author(s): Zhuolin Li, Yao Lin, Bizhen Cheng, Qiaoxin Zhang, Yingmu Cai
Software Mentions: 6
Published: over 5 years ago

10.3389/fmolb.2021.644620

Pan-Cancer Prognostic, Immunity, Stemness, and Anticancer Drug Sensitivity Characterization of N6-Methyladenosine RNA Modification Regulators in Human Cancers
Cited by: 24
Author(s): Rui Li, Yunhong Yin, Xiu-Li Ji, Xiao Liu, Jianping Li, Yi-Qing Qu
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-019-38798-y

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks
Cited by: 10
Author(s): Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, Aryan Kamal, Seyed Abolfazl Motahari, Ali Sharifi-Zarchi, Hamidreza Chitsaz
Software Mentions: 6
Published: over 7 years ago

10.3389/fgene.2020.00404

Integrative Omics Analysis Reveals a Limited Transcriptional Shock After Yeast Interspecies Hybridization
Cited by: 20
Author(s): Hrant Hovhannisyan, Ester Saus, Ewa Księżopolska, Alex J Hinks Roberts, Edward J. Louis, Toni Gabaldón
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2020.575625

Plant Genotype Influences Physicochemical Properties of Substrate as Well as Bacterial and Fungal Assemblages in the Rhizosphere of Balsam Poplar
Cited by: 9
Author(s): Karelle Rheault, Denis Lachance, Marie-Josée Morency, Évelyne Thiffault, Marie Guittonny, Nathalie Isabel, Christine Martineau, Armand Séguin
Software Mentions: 6
Published: over 5 years ago

10.3390/insects11040217

Host Plants Influence the Symbiont Diversity of Eriosomatinae (Hemiptera: Aphididae)
Cited by: 14
Author(s): Tingting Xu, Li‐Yun Jiang, Jing Chen, Ge‐Xia Qiao
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2021.716623

Deep Sequencing of MHC-Adapted Viral Lines Reveals Complex Recombinational Exchanges With Endogenous Retroviruses Leading to High-Frequency Variants
Cited by: 1
Author(s): Earl Middlebrook, Derek L. Stark, Douglas H. Cornwall, Jason L. Kubinak, Wayne K. Potts
Software Mentions: 6
Published: almost 5 years ago

10.1016/j.celrep.2019.06.039

Acute Iron Deprivation Reprograms Human Macrophage Metabolism and Reduces Inflammation In Vivo
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Author(s): Marie Pereira, Tai‐Di Chen, Norzawani Buang, Antoni Olona, Jeong‐Hun Ko, Maria Prendecki, Ana S.H. Costa, Efterpi Nikitopoulou, Laura Tronci, Charles D. Pusey, H. Terence Cook, Stephen P. McAdoo, Christian Frezza, Jacques Behmoaras
Software Mentions: 6
Published: almost 7 years ago

10.3390/microorganisms8020175

Biostimulating Gut Microbiome with Bilberry Anthocyanin Combo to Enhance Anti-PD-L1 Efficiency against Murine Colon Cancer
Cited by: 35
Author(s): Xuerun Liu, Luoyang Wang, Nan Jing, Guoqiang Jiang, Zheng Liu
Software Mentions: 6
Published: over 6 years ago

10.3390/nu13082610

Testing and Prescribing Vitamin B12 in Swiss General Practice: A Survey among Physicians
Cited by: 1
Author(s): Katarina Bardheci, Levy Jäger, L. Risch, Thomas Rosemann, Jakob M Burgstaller, Stefan Markun
Software Mentions: 6
Published: almost 5 years ago

10.1128/mSystems.00100-17

Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients
Cited by: 11
Author(s): Stephen Wandro, Lisa A. Carmody, Tara Gallagher, John J. LiPuma, Katrine Whiteson
Software Mentions: 6
Published: over 8 years ago

10.1016/j.celrep.2019.06.046

Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry
Cited by: 68
Author(s): Pavel Bouchal, Olga T. Schubert, Jakub Faktor, Lenka Čápková, Hana Imrichová, Karolína Zoufalová, Vendula Páralová, Roman Hrstka, Yansheng Liu, H. Alexander Ebhardt, Eva Budínská, Rudolf Nenutil, Ruedi Aebersold
Software Mentions: 6
Published: almost 7 years ago

10.7554/eLife.45672

Tumor suppressor SMARCB1 suppresses super-enhancers to govern hESC lineage determination
Cited by: 27
Author(s): Lee Langer, James M. Ward, Trevor Archer
Software Mentions: 6
Published: about 7 years ago

10.1186/s13071-019-3761-8

Regional biogeography of microbiota composition in the Chagas disease vector Rhodnius pallescens
Cited by: 15
Author(s): Troy J. Kieran, Kaylee M. H. Arnold, Jesse C. Thomas, Christina P. Varian, Azäel Saldaña, José E. Calzada, Nicole L. Gottdenker
Software Mentions: 6
Published: over 6 years ago

10.12688/f1000research.15858.1

Visualizing balances of compositional data: A new alternative to balance dendrograms
Cited by: 13
Author(s): Thomas P. Quinn
Software Mentions: 6
Published: almost 8 years ago

10.3389/fgene.2019.00209

Identifying Hub Genes for Heat Tolerance in Water Buffalo (Bubalus bubalis) Using Transcriptome Data
Cited by: 23
Author(s): Shenhe Liu, Tingzhu Ye, Zipeng Li, Jun Li, Muhammad Jamil Ahmad, Yang Zhou, Guohua Hua, Aixin Liang, Tingxian Deng, Liguo Yang
Software Mentions: 6
Published: over 7 years ago

10.1093/jxb/erx018

Genome-wide association study unravels the genetic control of the apple volatilome and its interplay with fruit texture
Cited by: 50
Author(s): Brian Farneti, Mario Di Guardo, Iuliia Khomenko, Luca Cappellin, Franco Biasioli, Riccardo Velasco, Fabrizio Costa
Software Mentions: 6
Published: over 9 years ago

10.3390/microorganisms6030068

Cloacal and Ocular Microbiota of the Endangered Australian Northern Quoll
Cited by: 2
Author(s): Catherine Burke, Delaney Burnard, Adam Polkinghorne, Jonathan K. Webb, Wilhelmina M. Huston
Software Mentions: 6
Published: almost 8 years ago

10.3390/microorganisms9040811

Bacterial Communities Associated with Poa annua Roots in Central European (Poland) and Antarctic Settings (King George Island)
Cited by: 7
Author(s): Anna Znój, Jakub Grzesiak, Jan Gawor, Robert Gromadka, Katarzyna J. Chwedorzewska
Software Mentions: 6
Published: about 5 years ago

10.3389/fpsyt.2021.697127

Daily-Life Social Experiences as a Potential Mediator of the Relationship Between Parenting and Psychopathology in Adolescence
Cited by: 6
Author(s): Robin Achterhof, Olivia J. Kirtley, Maude Schneider, Ginette Lafit, Noëmi Hagemann, Karlijn Susanna Francisca Maria Hermans, Anu P. Hiekkaranta, Aleksandra Lecei, Inez Myin-Germeys
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12866-020-01739-1

Alter between gut bacteria and blood metabolites and the anti-tumor effects of Faecalibacterium prausnitzii in breast cancer
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Author(s): Ji Ma, Lingqi Sun, Ying Liu, Hui Ren, Yali Shen, Feng Bi, Tao Zhang, Xin Wang
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2021.638458

Expression Profile Analysis Identifies a Novel Seven Immune-Related Gene Signature to Improve Prognosis Prediction of Glioblastoma
Cited by: 5
Author(s): Li Hu, Zhibin Han, Xingbo Cheng, Sida Wang, Yumeng Feng, Zhiguo Lin
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.8030

Marking through molts: An evaluation of visible implant elastomer to permanently mark individuals in a lower termite species
Cited by: 1
Author(s): Rebecca F. B. Padget, Faye J. Thompson
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.3213

Pollination by the locally endangered island flying fox (<i>Pteropus hypomelanus</i>) enhances fruit production of the economically important durian (<i>Durio zibethinus</i>)
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Author(s): Sheema Abdul Aziz, Gopalasamy Reuben Clements, Kim R. McConkey, Tuanjit Sritongchuay, Saifful Pathil, Muhammad Nur Hafizi Abu Yazid, Ahimsa Campos‐Arceiz, Pierre‐Michel Forget, Sara Bumrungsri
Software Mentions: 6
Published: almost 9 years ago

10.3389/fphar.2021.630457

Derivation of a Human In Vivo Benchmark Dose for Perfluorooctanoic Acid From ToxCast In Vitro Concentration–Response Data Using a Computational Workflow for Probabilistic Quantitative In Vitro to In Vivo Extrapolation
Cited by: 8
Author(s): George Loizou, Kevin McNally, Jean-Lou C.M. Dorne, Alex Hogg
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.7453

High‐throughput sequencing on preservative ethanol is effective at jointly examining infraspecific and taxonomic diversity, although bioinformatics pipelines do not perform equally
Cited by: 7
Author(s): Marjorie Couton, Aurélien Baud, Claire Daguin‐Thiébaut, Erwan Corre, Thierry Comtet, Frédérique Viard
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.630706

The Immune-Related Gene HCST as a Novel Biomarker for the Diagnosis and Prognosis of Clear Cell Renal Cell Carcinoma
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Author(s): Yongying Zhou, Xiao Wang, Weibing Zhang, Huiyong Liu, Daoquan Liu, Ping Chen, Dongmei Xu, Jianmin Liu, Yan Li, Guang Zeng, Mingzhou Li, Zhonghua Wu, Yingao Zhang, Xinghuan Wang, Michael E. DiSanto, Xinhua Zhang
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.7181

Match and mismatch: Integrating consumptive effects of predators, prey traits, and habitat selection in colonizing aquatic insects
Cited by: 7
Author(s): Matthew R. Pintar, William J. Resetarits
Software Mentions: 6
Published: over 5 years ago

10.3389/fpsyt.2020.00384

Effectiveness of Open-Ended Psychotherapy Under Clinically Representative Conditions
Cited by: 6
Author(s): Magnus Nordmo, Nils Martin Sønderland, Odd E. Havik, Dag Erik Eilertsen, Jon T. Monsen, Ole André Solbakken
Software Mentions: 6
Published: about 6 years ago

10.3389/fpsyt.2020.00217

Sex-Specific Differences in Severity of Depressive Symptoms, Heart Rate Variability, and Neurocognitive Profiles of Depressed Young Adults: Exploring Characteristics for Mild Depression
Cited by: 5
Author(s): Jong-Deock Lim, Je Yeon Yun, Yoobin Choi, Seong Hee Choi, Young-Sang Kwon, Hwa Young Lee, Joon Hwan Jang
Software Mentions: 6
Published: over 6 years ago

10.1242/jeb.242168

Limited heat tolerance in a cold-adapted seabird: implications of a warming Arctic
Cited by: 18
Author(s): Emily S. Choy, Ryan S. O’Connor, H. Grant Gilchrist, Anna L. Hargreaves, Oliver P. Love, François Vézina, Kyle H. Elliott
Software Mentions: 6
Published: almost 5 years ago

10.3390/ijms21124367

Machine-Learned Association of Next-Generation Sequencing-Derived Variants in Thermosensitive Ion Channels Genes with Human Thermal Pain Sensitivity Phenotypes
Cited by: 2
Author(s): Jörn Lötsch, Dario Kringel, Gerd Geißlinger, B. Oertel, Eduard Resch, Sebastian Malkusch
Software Mentions: 6
Published: about 6 years ago

10.7150/ijms.61309

Integrated analysis of the molecular mechanisms in idiopathic pulmonary fibrosis
Cited by: 6
Author(s): Ke Zhu, Aiqun Xu, Wanli Xia, Pulin Li, Rui Han, Enze Wang, Sijing Zhou, Ran Wang
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms20246303

Mitochondrial Bioenergetics in Brain Following Ozone Exposure in Rats Maintained on Coconut, Fish and Olive Oil-Rich Diets
Cited by: 14
Author(s): Matthew C. Valdez, Danielle L. Freeborn, Joseph M. Valdez, Andrew F.M. Johnstone, Samantha J. Snow, Alan Tennant, Urmila P. Kodavanti, Prasada Rao S. Kodavanti
Software Mentions: 6
Published: over 6 years ago

10.1016/j.celrep.2019.12.019

Neuroinflammation-Associated Aspecific Manipulation of Mouse Predator Fear by Toxoplasma gondii
Cited by: 81
Author(s): Madlaina Boillat, Pierre‐Mehdi Hammoudi, Sunil Kumar Dogga, Stéphane Pagès, Maged Goubran, Iván Rodríguez, Dominique Soldati‐Favre
Software Mentions: 6
Published: over 6 years ago

10.12688/f1000research.14541.1

drawProteins: a Bioconductor/R package for reproducible and programmatic generation of protein schematics
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Author(s): Paul Brennan
Software Mentions: 6
Published: almost 8 years ago

10.1007/s00436-020-06666-8

Research paper on abiotic factors and their influence on Ixodes ricinus activity—observations over a two-year period at several tick collection sites in Germany
Cited by: 14
Author(s): Jörn Gethmann, Bernd Hoffmann, Elisa Kasbohm, Jochen Süß, Birgit Habedank, Franz Josef Conraths, Martin Beer, Christine Klaus
Software Mentions: 6
Published: about 6 years ago

10.7150/ijms.46456

Lipid Metabolism is the common pathologic mechanism between Type 2 Diabetes Mellitus and Parkinson's disease
Cited by: 6
Author(s): Xi Zhang, Yu Fan, Yuan Luo, Lingjing Jin, Siguang Li
Software Mentions: 6
Published: over 6 years ago

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