cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1007/s00253-014-6199-0

Bacillus subtilis as heterologous host for the secretory production of the non-ribosomal cyclodepsipeptide enniatin
Cited by: 49
Author(s): Sophia Zobel, Jana Kumpfmüller, Roderich D. Süssmuth, Thomas Schweder
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0236489

Incubating parents serve as visual cues to predators in Kentish plover (Charadrius alexandrinus)
Cited by: 6
Author(s): Noémie Engel, Zsolt Végvári, Romy Rice, Vojtěch Kubelka, Tamás Székely
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0088419

Bayesian Model Comparison and Parameter Inference in Systems Biology Using Nested Sampling
Cited by: 38
Author(s): Nick Pullen, Richard J. Morris
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0101685

Genetic Variation in DNA Repair Pathways and Risk of Non-Hodgkin's Lymphoma
Cited by: 20
Author(s): Justin Rendleman, Yevgeniy Antipin, Boris Reva, Christina Adaniel, Jennifer A. Przybylo, Ana Dutra-Clarke, Nichole Hansen, Adriana Heguy, Kety Huberman, Laetitia Borsu, Ora Paltiel, Dina Ben‐Yehuda, Jennifer R. Brown, Arnold S. Freedman, Chris Sander, Andrew D. Zelenetz, Robert J. Klein, Yongzhao Shao, Mortimer J. Lacher, Joseph Vijai, Kenneth Offit, Tomas Kirchhoff
Software Mentions: 1
Published: over 12 years ago

10.1093/tas/txab033

High-throughput genotype-based population structure analysis of selected buffalo breeds
Cited by: 3
Author(s): Prakash B Thakor, Ankit T. Hinsu, Dhruv Bhatia, Tejas Shah, Nilesh Nayee, A Sudhakar, D. N. Rank, Chaitanya Joshi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0208829

Complex spatio-temporal distribution and genomic ancestry of mitochondrial DNA haplogroups in 24,216 Danes
Cited by: 5
Author(s): Jonas Bybjerg‐Grauholm, Christian Munch Hagen, Vanessa F. Gonçalves, Marie Bækvad‐Hansen, Christine Hansen, Paula L. Hedley, Jørgen K. Kanters, Jimmi Nielsen, Michael Theisen, Ole Mors, James L. Kennedy, Thomas Damm Als, Alfonso Buil Demur, Merete Nordentoft, Anders D. Børglum, Preben Bo Mortensen, Thomas Werge, David M. Hougaard, Michael Christiansen
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0146538

Knowledge of Bovine Tuberculosis, Cattle Husbandry and Dairy Practices amongst Pastoralists and Small-Scale Dairy Farmers in Cameroon
Cited by: 38
Author(s): Robert F. Kelly, Saidou M. Hamman, K. L. Morgan, Egbe Franklyn Nkongho, Victor Ngu Ngwa, Vincent N. Tanya, Walters N. Andu, Melissa Sander, Lucy Ndip, Ian Handel, Stella Mazeri, Adrian Muwonge, Barend M. deC. Bronsvoort
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0099782

Human Coronaviruses Associated with Upper Respiratory Tract Infections in Three Rural Areas of Ghana
Cited by: 63
Author(s): Michael Owusu, Augustina Annan, Victor M. Corman, Richard Larbi, Priscilla Anti, Jan Felix Drexler, Olivia Agbenyega, Yaw Adu‐Sarkodie, Christian Drosten
Software Mentions: 1
Published: about 12 years ago

10.1016/j.tranon.2018.08.006

Somatic TP53 Mutations Are Detectable in Circulating Tumor DNA from Children with Anaplastic Wilms Tumors
Cited by: 20
Author(s): Taryn D. Treger, Tasnim Chagtai, Robert Butcher, George D Cresswell, Reem Al‐Saadi, Jesper Brok, Richard D. Williams, Chrissy h. Roberts, Nicholas M. Luscombe, Kathy Pritchard‐Jones, William Mifsud
Software Mentions: 1
Published: almost 8 years ago

10.1038/tp.2014.127

Plasma lipidomics analysis finds long chain cholesteryl esters to be associated with Alzheimer’s disease
Cited by: 100
Author(s): Petroula Proitsi, M Kim, Luke Whiley, Megan Pritchard, Rufina Leung, Hilkka Soininen, Iwona Kłoszewska, Patrizia Mecocci, Magda Tsolaki, Bruno Vellas, Pak C. Sham, Simon Lovestone, John Powell, Richard Dobson, Cristina Legido‐Quigley
Software Mentions: 1
Published: almost 12 years ago

10.1155/2021/8899274

Proteomic Analysis Revealed the Characteristics of Key Proteins Involved in the Regulation of Inflammatory Response, Leukocyte Transendothelial Migration, Phagocytosis, and Immune Process during Early Lung Blast Injury
Cited by: 4
Author(s): Yunen Liu, Changci Tong, Peifang Cong, Ying Liu, Xiuyun Shi, Lin Shi, Shun Mao, Yan Zhao, Hongxu Jin, Mingxiao Hou
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0098076

Genome-Wide Analysis of Cold Adaptation in Indigenous Siberian Populations
Cited by: 119
Author(s): Alexia Cardona, Luca Pagani, Tiago Antão, Daniel J. Lawson, Christina A. Eichstaedt, Bryndís Yngvadóttir, Ma Than Than Shwe, Joseph Wee, Irene Gallego Romero, Srilakshmi M. Raj, Mait Metspalu, Richard Villems, Eske Willerslev, Chris Tyler‐Smith, B. A. Malyarchuk, Miroslava Derenko, Toomas Kivisild
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0205429

Tool making cockatoos adjust the lengths but not the widths of their tools to function
Cited by: 14
Author(s): Alice M. I. Auersperg, Celeste de Kock, Mark O’Hara, Ludwig Huber
Software Mentions: 1
Published: almost 8 years ago

10.1128/AEM.01113-20

Multiple Drug-Induced Stress Responses Inhibit Formation of Escherichia coli Biofilms
Cited by: 4
Author(s): N. A. Teteneva, S. V. Mart’yanov, María Esteban-López, Jörg Kahnt, Timo Glatter, А.И. Нетрусов, В. К. Плакунов, Victor Sourjik
Software Mentions: 1
Published: about 6 years ago

10.1093/aobpla/plx054

Low temperature limits for root growth in alpine species are set by cell differentiation
Cited by: 23
Author(s): Sebastian Nagelmüller, Erika Hiltbrunner, Christian Körner
Software Mentions: 1
Published: about 9 years ago

10.3390/antiox10020144

Neurophysiological Effects of Whole Coffee Cherry Extract in Older Adults with Subjective Cognitive Impairment: A Randomized, Double-Blind, Placebo-Controlled, Cross-Over Pilot Study
Cited by: 11
Author(s): Jennifer L. Robinson, Julio A. Yanes, Meredith A. Reid, Jerry E. Murphy, Jessica N. Busler, Petey W. Mumford, Kaelin C. Young, Zbigniew Pietrzkowski, Boris Nemzer, John M. Hunter, Darren T. Beck
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41398-020-00931-1

Testing relationships between multimodal modes of brain structural variation and age, sex and polygenic scores for neuroticism in children and adolescents
Cited by: 3
Author(s): Linn B. Norbom, Jaroslav Rokicki, Dennis van der Meer, Dag Alnæs, null Nhat Trung Doan, Torgeir Moberget, Tobias Kaufmann, Ole A. Andreassen, Lars T. Westlye, Christian K. Tamnes
Software Mentions: 1
Published: over 6 years ago

10.3390/antiox9050421

Zinc Concentration Dynamics Indicate Neurological Impairment Odds after Traumatic Spinal Cord Injury
Cited by: 14
Author(s): Raban Arved Heller, André Sperl, Julian Seelig, Patrick Haubruck, Tobias Bock, Theresa Werner, Albert Besseling, Qian Sun, Lutz Schomburg, Arash Moghaddam, Bahram Biglari
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0179172

Trends in food insecurity for adults with cardiometabolic disease in the United States: 2005-2012
Cited by: 96
Author(s): Seth A. Berkowitz, Theodore S Z Berkowitz, James B. Meigs, Deborah J. Wexler
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0257583

Racial and ethnic disparities in HIV diagnoses among heterosexually active persons in the United States nationally and by state, 2018
Cited by: 4
Author(s): Erika G. Martin, Bahareh Ansari, Rachel Hart-Malloy, Dawn K. Smith, Kevin P. Delaney, Thomas L. Gift, Andrés A. Berruti, Monica Trigg, Eli S. Rosenberg
Software Mentions: 1
Published: about 5 years ago

10.1038/s41398-021-01213-0

1q21.1 distal copy number variants are associated with cerebral and cognitive alterations in humans
Cited by: 23
Author(s): Ida Elken Sønderby, Dennis van der Meer, Clara Moreau, Tobias Kaufmann, G. Bragi Walters, Maria Ellegaard, Abdel Abdellaoui, David Ames, Katrin Amunts, Micael Andersson, Nicola J. Armstrong, Manon Bernard, Nicholas B. Blackburn, John Blangero, Dorret I. Boomsma, Henry Brodaty, Rachel M. Brouwer, Robin Bülow, Rune Bøen, Wiepke Cahn, Vince D. Calhoun, Svenja Caspers, Christopher R. K. Ching, Sven Cichon, Simone Ciufolini, Benedicto Crespo‐Facorro, Joanne E. Curran, Anders M. Dale, Shareefa Dalvie, Paola Dazzan, Eco J. C. de Geus, Greig I. de Zubicaray, Sonja M C de Zwarte, Sylvane Desrivières, Joanne L. Doherty, Gary Donohoe, Bogdan Draganski, Stefan Ehrlich, Else Eising, Thomas Espeseth, Kim Fejgin, Simon E. Fisher, Tormod Fladby, Oleksandr Frei, Vincent Frouin, Masaki Fukunaga, Thomas Gareau, Tian Ge, David C. Glahn, Hans J. Grabe, Nynke A. Groenewold, Ómar Gústafsson, Jan Haavik, Asta Håberg, Jérémy Hall, Ryota Hashimoto, Jayne Y. Hehir-Kwa, Derrek P. Hibar, Manon H. J. Hillegers, Per Hoffmann, Laurena Holleran, Avram J. Holmes, Georg Homuth, Jouke‐Jan Hottenga, Hilleke E. Hulshoff Pol, Masashi Ikeda, Neda Jahanshad, Christiane Jockwitz, Stefan Johansson, Erik G. Jönsson, Niklas Rye Jørgensen, Masataka Kikuchi, Emma Knowles, Kuldeep Kumar, Stéphanie Le Hellard, Costin Leu, David Linden, Jingyu Liu, Arvid Lundervold, Anne Maillard, Nicholas G. Martin, Sandra Martin‐Brevet, Karen A. Mather, Samuel R. Mathias, Katie L. McMahon, Allan F. McRae, Sarah E. Medland, Andreas Meyer‐Lindenberg, Torgeir Moberget, Claudia Modenato, Jennifer Monereo Sánchez, Derek W. Morris, Thomas W. Mühleisen, Robin M. Murray, Jacob Nielsen, Jan Egil Nordvik, Lars Nyberg, Loes Olde Loohuis, Roel A. Ophoff, Michael John Owen, Tomáš Paus, Zdenka Pausová, Juan M. Peralta, G. Bruce Pike, Carlos Prieto, Erin Burke Quinlan, Céline S. Reinbold, Tiago Reis Marques, James Rucker, Perminder S. Sachdev, Sigrid Botne Sando, Peter R. Schofield, Andrew J. Schork, Gunter Schümann, Jean Shin, Elena Shumskaya, Ana Isabel Silva, Sanjay M. Sisodiya, Vidar M. Steen, Dan J. Stein, Lachlan T. Strike, Ikuo Suzuki, Christian K. Tamnes, Alexander Teumer, Anbupalam Thalamuthu, Diana Tordesillas‐Gutiérrez, Anne Uhlmann, Magnus O. Ulfarsson, Dennis van ‘t Ent, Marianne B. M. van den Bree, Pierre Vanderhaeghen, Evangelos Vassos, Wen Wang, Katharina Wittfeld, Margaret J. Wright, Ingrid Agartz, Srdjan Djurovic, Lars T. Westlye, Hreinn Stefánsson, Kāri Stefánsson, Sébastien Jacquemont, Paul M. Thompson, Ole A. Andreassen
Software Mentions: 1
Published: over 5 years ago

10.3390/antiox10060958

Redox Biomarker Baseline Levels in Cattle Tissues and Their Relationships with Meat Quality
Cited by: 6
Author(s): Zoi Skaperda, Angeliki Argyriadou, Paraskevi Maria Nechalioti, Maria Alvanou, Sotiria Makri, Efterpi Bouroutzika, Ioannis D. Kyriazis, Fotios Tekos, Aristidis S. Veskoukis, Theodoros Kallitsis, Robin Mesnage, G. Arsenos, Demetrios Kouretas
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-021-01328-4

Subgenual cingulate resting regional cerebral blood flow in premenstrual dysphoric disorder: differential regulation by ovarian steroids and preliminary evidence for an association with expression of ESC/E(Z) complex genes
Cited by: 4
Author(s): Shau-Ming Wei, Erica B. Baller, Pedro E. Martinez, Allison Goff, Howard J. Li, Philip D. Kohn, J. Shane Kippenhan, Steven J. Soldin, David R. Rubinow, David Goldman, Peter J. Schmidt, Karen F. Berman
Software Mentions: 1
Published: over 5 years ago

10.3390/antiox8110509

The Role of Magnesium in the Secondary Phase After Traumatic Spinal Cord Injury. A Prospective Clinical Observer Study
Cited by: 12
Author(s): André Sperl, Raban Arved Heller, Bahram Biglari, Patrick Haubruck, Julian Seelig, Lutz Schomburg, Tobias Bock, Arash Moghaddam
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0247783

Transcriptome analysis of the role of autophagy in plant response to heat stress
Cited by: 4
Author(s): Yan Zhang, Haoxuan Min, Chengchen Shi, Xia Gao, Zhibing Lai
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-021-01591-5

Genetic polymorphism of CYP2C19 and subcortical variability in the human adult brain
Cited by: 7
Author(s): Julia Stingl, Catharina Scholl, Julia Bosch, Roberto Viviani
Software Mentions: 1
Published: about 5 years ago

10.1038/s41398-021-01620-3

Gut microbiota link dietary fiber intake and short-chain fatty acid metabolism with eating behavior
Cited by: 44
Author(s): Evelyn Medawar, Sven-Bastiaan Haange, Ulrike Rolle-Kampczyk, Beatrice Engelmann, Arne Dietrich, Ronja Thieleking, Charlotte Wiegank, Charlotte Fries, Annette Horstmann, Arno Villringer, Martin von Bergen, Wiebke Fenske, A. Veronica Witte
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0230141

Design of composite measure schemes for comparative severity assessment in animal-based neuroscience research: A case study focussed on rat epilepsy models
Cited by: 15
Author(s): Roelof Maarten van Dijk, Ines Koska, André Bleich, René Tolba, Isabel Seiffert, Christina Möller, Valentina Di Liberto, Steven R. Talbot, Heidrun Potschka
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0041162

FAST-SeqS: A Simple and Efficient Method for the Detection of Aneuploidy by Massively Parallel Sequencing
Cited by: 62
Author(s): Isaac Kinde, Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein
Software Mentions: 1
Published: over 14 years ago

10.1186/s13063-015-0970-0

The Patient Remote Intervention and Symptom Management System (PRISMS) – a Telehealth- mediated intervention enabling real-time monitoring of chemotherapy side-effects in patients with haematological malignancies: study protocol for a randomised controlled trial
Cited by: 58
Author(s): Sibilah Breen, David Ritchie, Penelope Schofield, Y Hsueh, Karla Gough, Nick Santamaria, Rose Kamateros, Roma Maguire, Nora Kearney, Sanchia Aranda
Software Mentions: 1
Published: about 11 years ago

10.1089/ars.2015.6516

Methionine Metabolism Alters Oxidative Stress Resistance<i>via</i>the Pentose Phosphate Pathway
Cited by: 84
Author(s): Kate Campbell, Jakob Vowinckel, Markus A. Keller, Markus Ralser
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0167876

Susceptibility and Antibody Response of the Laboratory Model Zebra Finch (Taeniopygia guttata) to West Nile Virus
Cited by: 11
Author(s): Erik K. Hofmeister, Melissa Lund, Valerie I. Shearn-Bochsler, Christopher N. Balakrishnan
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0153009

Sphingosine-1-Phosphate Lyase Deficient Cells as a Tool to Study Protein Lipid Interactions
Cited by: 36
Author(s): Mathias J. Gerl, Verena Bittl, Susanne Kirchner, Timo Sachsenheimer, Hanna L. Brunner, Christian Lüchtenborg, Cagakan Özbalci, Hannah Wiedemann, Sabine Wegehingel, Walter Nickel, Per Haberkant, Carsten Schultz, Marcus Krüger, Britta Brügger
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0115626

Reducing Uncertainty in the American Community Survey through Data-Driven Regionalization
Cited by: 61
Author(s): Seth E. Spielman, David C. Folch
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0080347

First Partial Skeleton of a 1.34-Million-Year-Old Paranthropus boisei from Bed II, Olduvai Gorge, Tanzania
Cited by: 135
Author(s): Manuel Domı́nguez-Rodrigo, Travis Rayne Pickering, Enrique Baquedano, Audax Mabulla, Darren F. Mark, Charles M. Musiba, Henry T. Bunn, David Uribelarrea, Vicki Smith, Fernando Diéz Martín, Alfredo Pérez‐González, Policarpo Sánchez, Manuel Santonja, Doris Barboni, Agness Gidna, Gail M. Ashley, José Yravedra, Jason L. Heaton, María Carmen Arriaza
Software Mentions: 1
Published: almost 13 years ago

10.1523/ENEURO.0076-20.2020

diceCT: A Valuable Technique to Study the Nervous System of Fish
Cited by: 13
Author(s): Victoria Camilieri-Asch, Jeremy Shaw, Andrew Mehnert, Kara E. Yopak, Julian C. Partridge, Shaun P. Collin
Software Mentions: 1
Published: over 6 years ago

10.1186/s13756-019-0470-1

The potential of visible blue light (405 nm) as a novel decontamination strategy for carbapenemase-producing enterobacteriaceae (CPE)
Cited by: 10
Author(s): Fenella D. Halstead, Zahra S. Ahmed, Jonathan Bishop, Beryl Oppenheim
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0177013

Leopard in a tea-cup: A study of leopard habitat-use and human-leopard interactions in north-eastern India
Cited by: 55
Author(s): Aritra Kshettry, Srinivas Vaidyanathan, Vidya Athreya
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0159086

How to Fairly Allocate Scarce Medical Resources: Ethical Argumentation under Scrutiny by Health Professionals and Lay People
Cited by: 46
Author(s): Pius Krütli, Thomas Rosemann, Kjell Törnblom, Timo Smieszek
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0085203

Aerodynamic Characteristics of a Feathered Dinosaur Measured Using Physical Models. Effects of Form on Static Stability and Control Effectiveness
Cited by: 20
Author(s): Dennis Evangelista, Cardona Griselda, Guenther-Gleason Eric, Tony L. Huynh, Austin Kwong, Marks Dylan, Neil Ray, Adrian Tisbe, Kyle Tse, M. A. R. Koehl
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0176296

Ex vivo cultures combined with vivo-morpholino induced gene knockdown provide a system to assess the role of WT1 and GATA4 during gonad differentiation
Cited by: 13
Author(s): Lucas J. Rudigier, Christof Dame, Holger Scholz, Karin M. Kirschner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0190927

Localized zinc distribution in shark vertebrae suggests differential deposition during ontogeny and across vertebral structures
Cited by: 12
Author(s): Vincent Raoult, Nicholas R. Howell, David Zahra, Victor M. Peddemors, Daryl L. Howard, Martin D. de Jonge, Benjamin L. Buchan, Jane E. Williamson
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0112572

Metabolomic Analysis Using Ultra-Performance Liquid Chromatography-Quadrupole-Time of Flight Mass Spectrometry (UPLC-Q-TOF MS) Uncovers the Effects of Light Intensity and Temperature under Shading Treatments on the Metabolites in Tea
Cited by: 68
Author(s): Qunfeng Zhang, Yuanzhi Shi, Lei Ma, Xiaoyun Yi, Jianyun Ruan
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0170647

Increased Gamma Brainwave Amplitude Compared to Control in Three Different Meditation Traditions
Cited by: 99
Author(s): Claire Braboszcz, B. Rael Cahn, Jonathan Lévy, M. Fernàndez, Arnaud Delorme
Software Mentions: 1
Published: almost 10 years ago

10.1186/s40478-019-0863-7

Cellular alterations identified in pluripotent stem cell-derived midbrain spheroids generated from a female patient with progressive external ophthalmoplegia and parkinsonism who carries a novel variation (p.Q811R) in the POLG1 gene
Cited by: 20
Author(s): Margarita Chumarina, Kaspar Russ, Carla Azevedo, Andreas Heuer, Maria Pihl, Anna Collin, Eleonor Åsander Frostner, Eskil Elmér, Poul Hyttel, Graziella Cappelletti, Michela Zini, Stefano Goldwurm, Laurent Roybon
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0237178

Entanglement rates and haulout abundance trends of Steller (Eumetopias jubatus) and California (Zalophus californianus) sea lions on the north coast of Washington state
Cited by: 6
Author(s): Elizabeth Marina Allyn, Jonathan J. Scordino
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0159518

High Hospitalization Rates in Survivors of Childhood Cancer: A Longitudinal Follow-Up Study Using Medical Record Linkage
Cited by: 23
Author(s): Elske Sieswerda, Anna Font-Gonzalez, Johannes B. Reitsma, Marcel G. W. Dijkgraaf, Richard C. Heinen, Monique W. M. Jaspers, Helena J. van der Pal, Flora E. van Leeuwen, Huib N. Caron, Ronald B. Geskus, Leontien C. M. Kremer
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.01053-16

Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule
Cited by: 45
Author(s): Chrispin Chaguza, Cheryl P. Andam, Simon R. Harris, Jennifer Cornick, Marie Yang, Laura Bricio-Moreno, Arox W Kamng’ona, Julian Parkhill, Neil French, Robert S. Heyderman, Aras Kadioglu, Dean Everett, Stephen D. Bentley, William P. Hanage
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0139663

Genomic Landscape of Primary Mediastinal B-Cell Lymphoma Cell Lines
Cited by: 17
Author(s): Haiping Dai, Stefan Ehrentraut, Stefan Nagel, Sonja Eberth, Claudia Pommerenke, Wilhelm G. Dirks, Robert Geffers, Srilaxmi Kalavalapalli, Maren Kaufmann, Corrina Meyer, Silke Faehnrich, Suning Chen, Hans G. Drexler, Roderick A.F. MacLeod
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0089428

Increased Prolactin Levels Are Associated with Impaired Processing Speed in Subjects with Early Psychosis
Cited by: 32
Author(s): Itziar Montalvo, Alfonso Gutiérrez-Zotes, Marta Creus, Rosa Monseny, Laura Ortega, J. Franch, Stephen M. Lawrie, Rebecca M. Reynolds, Elisabet Vilella, Javier Labad
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0137640

Deciphering Seed Sequence Based Off-Target Effects in a Large-Scale RNAi Reporter Screen for E-Cadherin Expression
Cited by: 8
Author(s): Robert A. Adams, Barbara Nicke, Hans‐Dieter Pohlenz, Florian Sohler
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0155143

Impaired Bile Acid Homeostasis in Children with Severe Acute Malnutrition
Cited by: 18
Author(s): Ling Zhang, Wieger Voskuijl, Marialena Mouzaki, Albert K. Groen, J. J. Alexander, Céline Bourdon, Alice Wang, Christian J. Versloot, Valeria Di Giovanni, Ronald J. A. Wanders, Robert Bandsma
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.02311-16

Nonselective Bottlenecks Control the Divergence and Diversification of Phase-Variable Bacterial Populations
Cited by: 13
Author(s): Jack Aidley, Shweta Rajopadhye, Nwanekka M. Akinyemi, Lea Lango-Scholey, Michael A. Jones, Christopher D. Bayliss
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0192117

The number of repeated observations needed to estimate the habitual physical activity of an individual to a given level of precision
Cited by: 25
Author(s): Patrick Bergman
Software Mentions: 1
Published: over 8 years ago

10.1186/s13756-020-00776-9

A multimodal intervention to improve hand hygiene compliance in peripheral wards of a tertiary care university centre: a cluster randomised controlled trial
Cited by: 9
Author(s): Seven Johannes Sam Aghdassi, C. Schröder, Elke Lemke, Michael Behnke, Patricia M. Fliss, Carolin Plotzki, Janina Wenk, Petra Gastmeier, Tobias Siegfried Kramer
Software Mentions: 1
Published: over 6 years ago

10.1523/ENEURO.0024-16.2016

Transcriptional Profiling of Newly Generated Dentate Granule Cells Using TU Tagging Reveals Pattern Shifts in Gene Expression during Circuit Integration
Cited by: 20
Author(s): Christina Chatzi, Yingyu Zhang, Rongkun Shen, Gary L. Westbrook, Richard H. Goodman
Software Mentions: 1
Published: almost 11 years ago

10.3390/antibiotics9110728

The Potential of Plant-Based Bioactive Compounds on Inhibition of Aflatoxin B1 Biosynthesis and Down-regulation of aflR, aflM and aflP Genes
Cited by: 16
Author(s): Nassim Safari, Mehran Mirabzadeh Ardakani, Roghayeh Hemmati, Alessia Parroni, Marzia Beccaccioli, Massimo Reverberi
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0192277

Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis
Cited by: 14
Author(s): Raees Khan, Nazish Roy, Kihyuck Choi, Seon-Woo Lee
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0156147

Near-Bottom Hypoxia Impacts Dynamics of Bacterioplankton Assemblage throughout Water Column of the Gulf of Finland (Baltic Sea)
Cited by: 8
Author(s): Peeter Laas, Elina Šatova, Inga Lips, Urmas Lips, Jaak Simm, Veljo Kisand, Madis Metsis
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0185972

Assessing climate change-robustness of protected area management plans—The case of Germany
Cited by: 6
Author(s): Juliane Geyer, Stefan Kreft, Florian Jeltsch, Pierre L. Ibisch
Software Mentions: 1
Published: about 9 years ago

10.3390/antibiotics10081006

Metagenomics-Based Analysis of the Age-Related Cumulative Effect of Antibiotic Resistance Genes in Gut Microbiota
Cited by: 11
Author(s): Lei Wu, Xinqiang Xie, Ying Liu, Tingting Liang, Hao‐Jie Zhong, Ma Jun, Lingshuang Yang, Juan Yang, Longyan Li, Xiaoyan Yu, Haixin Li, Jumei Zhang, Xuefeng Chen, Yu Ding, Qingping Wu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0156926

Universal HbA1c Measurement in Early Pregnancy to Detect Type 2 Diabetes Reduces Ethnic Disparities in Antenatal Diabetes Screening: A Population-Based Observational Study
Cited by: 13
Author(s): Ruth Hughes, Jonathan Williman, Joanna Gullam
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0186433

Integrated mRNA and microRNA transcriptome analyses reveal regulation of thermal acclimation in Gymnocypris przewalskii: A case study in Tibetan Schizothoracine fish
Cited by: 14
Author(s): Cunfang Zhang, Chao Tong, Fei Tian, Kai Zhao
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pntd.0008325

Ultra-sensitive detection of Mycobacterium leprae: DNA extraction and PCR assays
Cited by: 15
Author(s): Fernanda Saloum de Neves Manta, Thyago Leal-Calvo, Suelen Justo Maria Moreira, B.L.C. Marques, Marcelo Ribeiro-Alves, Patrícia Sammarco Rosa, José A. C. Nery, Rita de Cássia Pontello Rampazzo, Alexandre Dias Tavares Costa, Marco Aurélio Krieger, Milton Ozório Moraes
Software Mentions: 1
Published: over 6 years ago

10.1523/ENEURO.0300-19.2019

Characterization of Auditory and Binaural Spatial Hearing in a Fragile X Syndrome Mouse Model
Cited by: 11
Author(s): Elizabeth A. McCullagh, Shani Poleg, Nathaniel T. Greene, Molly M. Huntsman, Daniel J. Tollin, Achim Klug
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.02716-18

The Polar Organizing Protein PopZ Is Fundamental for Proper Cell Division and Segregation of Cellular Content in <i>Magnetospirillum gryphiswaldense</i>
Cited by: 16
Author(s): Daniel Pfeiffer, Mauricio Toro-Nahuelpan, Marc Bramkamp, Jürgen M. Plitzko, Dirk Schüler
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0006495

Atypical pharmacology of schistosome TRPA1-like ion channels
Cited by: 17
Author(s): Swarna Bais, Corbett T. Berry, Xiaohong Liu, Gordon Ruthel, Bruce D. Freedman, Robert M. Greenberg
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0005624

Radiological evolution of porcine neurocysticercosis after combined antiparasitic treatment with praziquantel and albendazole
Cited by: 7
Author(s): Carla Cangalaya, Javier A. Bustos, Juan Calcina, Ana Vargas-Calla, Javier Mamani, Diego Suarez, Gianfranco Arroyo, Armando E. González, Juan Chacaltana, Cristina Guerra‐Giraldez, Siddhartha Mahanty, Theodore E. Nash, Héctor H. Garcı́a
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pntd.0007874

Immune responses to O-specific polysaccharide (OSP) in North American adults infected with Vibrio cholerae O1 Inaba
Cited by: 11
Author(s): Md. Imam Hossain, Kamrul Islam, Meagan Kelly, Leslie M. Smith, Richelle C. Charles, Ana A. Weil, Taufiqur Rahman Bhuiyan, Pavol Kòváč, Peng Xu, Stephen B. Calderwood, Jakub K. Simon, Wilbur H. Chen, Michael Lock, Caroline E. Lyon, Beth D. Kirkpatrick, Mitchell B. Cohen, Myron M. Levine, Marc Gurwith, Daniel T. Leung, Andrew S. Azman, Jason B. Harris, Firdausi Qadri, Edward T. Ryan
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0006627

Systematic literature review of Rift Valley fever virus seroprevalence in livestock, wildlife and humans in Africa from 1968 to 2016
Cited by: 60
Author(s): M. L. Clark, George M. Warimwe, Antonello Di Nardo, Nicholas A. Lyons, Simon Gubbins
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.01224-19

Investigation of Genetic Susceptibility to Blastomycosis Reveals Interleukin-6 as a Potential Susceptibility Locus
Cited by: 30
Author(s): Richard M. Merkhofer, Mary O’Neill, Donny Xiong, Nydiaris Hernández-Santos, Hannah E. Dobson, J. Scott Fites, Abigail C. Shockey, Marcel Wuethrich, Caitlin S. Pepperell, Bruce S. Klein
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0006130

A comparative analysis of preservation techniques for the optimal molecular detection of hookworm DNA in a human fecal specimen
Cited by: 37
Author(s): Marina Papaiakovou, Nils Pilotte, Benjamin S. Baumer, Jessica R. Grant, Kristjana Ásbjörnsdóttir, Fabian Schaer, Yan Hu, Raffi V. Aroian, Judd L. Walson, Steven A. Williams
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0007753

Loss of pyrethroid resistance in newly established laboratory colonies of Aedes aegypti
Cited by: 12
Author(s): Farah Z. Vera-Maloof, Karla Saavedra-Rodríguez, Rosa Patricia Penilla-Navarro, Américo David Rodríguez-Ramírez, Felipe Dzul, Pablo Manrique-Saide, William C. Black
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0008605

In target areas where human mosquito-borne diseases are diagnosed, the inclusion of the pre-adult mosquito aquatic niches parameters will improve the integrated mosquito control program
Cited by: 2
Author(s): Swapan Kumar Ghosh, Dipanjan Podder, Atanu Kumar Panja, Sabyasachi Mukherjee
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0006981

Human antibody reaction against recombinant salivary proteins of Phlebotomus orientalis in Eastern Africa
Cited by: 9
Author(s): Petra Sumová, Michal Šíma, Tatiana Spitzová, Maha E. Osman, Anderson B. Guimarães-Costa, Fabiano Oliveira, Dia-Eldin A. Elnaiem, Asrat Hailu, Alon Warburg, Jesús G. Valenzuela, Petr Volf
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.01678-19

A Protein Antagonist of Activation-Induced Cytidine Deaminase Encoded by a Complex Mouse Retrovirus
Cited by: 8
Author(s): Gurvani B. Singh, Hyewon Byun, Almas F. Ali, Frank Medina, Dennis Wylie, Haridha Shivram, Andrea K. Nash, Mary M. Lozano, Jaquelin P. Dudley
Software Mentions: 1
Published: about 7 years ago

10.3390/antibiotics10050538

Antimicrobial Resistance Profiles of Human Commensal Neisseria Species
Cited by: 11
Author(s): Maïra Goytia, S Thompson, Skylar V. L. Jordan, Kacey A. King
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pntd.0007818

High-throughput genotyping of a full voltage-gated sodium channel gene via genomic DNA using target capture sequencing and analytical pipeline MoNaS to discover novel insecticide resistance mutations
Cited by: 15
Author(s): Kentaro Itokawa, Tsuyoshi Sekizuka, Yoshihide Maekawa, Koji Yatsu, Osamu Komagata, Masaaki Sugiura, Takehiro Sasaki, Takashi Tomita, Makoto Kuroda, Kyoko Sawabe, Shinji Kasai
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.01516-19

Hydrodynamic Shape Changes Underpin Nuclear Rerouting in Branched Hyphae of an Oomycete Pathogen
Cited by: 5
Author(s): Édouard Evangelisti, Liron Shenhav, T. S. Yunusov, Marie Le Naour—Vernet, Philipp Rink, Sebastián Schornack
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.02321-19

Identification of Key Determinants of Staphylococcus aureus Vaginal Colonization
Cited by: 28
Author(s): Liwen Deng, Katrin Schilcher, Lindsey R. Burcham, Jakub Kwieciński, Paige Johnson, Steven R. Head, David E. Heinrichs, Alexander R. Horswill, Kelly S. Doran
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pmed.1002514

The epidemiology of adolescents living with perinatally acquired HIV: A cross-region global cohort analysis
Cited by: 91
Author(s): Amy L. Slogrove, Michael Schomaker, Mary‐Ann Davies, Paige Williams, Suna Balkan, Jihane Ben‐Farhat, Nancy R. Calles, Kulkanya Chokephaibulkit, Charlotte Duff, Tanoh François Eboua, Adeodata Kekitiinwa‐Rukyalekere, Nicola Maxwell, Jorge Pinto, George R. Seage, Chloe A. Teasdale, Sebastian Wanless, Josiane Warszawski, Kara Wools‐Kaloustian, Marcel Yotebieng, Venessa Timmerman, Intira Jeannie Collins, Ruth Goodall, Colette Smith, Kunjal Patel, Mary E. Paul, Diana Gibb, Rachel C. Vreeman, Elaine J. Abrams, Rohan Hazra, Russell Van Dyke, Linda‐Gail Bekker, Lynne Mofenson, Marissa Vicari, Shaffiq Essajee, Martina Penazzato, Gabriel Anabwani, Edith Q. Mohapi, Peter N. Kazembe, Makhosazana Hlatshwayo, Mwita Lumumba, Tessa Goetghebuer, Claire Thorne, Luisa Galli, Annemarie M. C. van Rossum, Carlo Giaquinto, Magdalena Marczyńska, Laura Marquès, Filipa Prata, Luminiţa Ene, Liubov Okhonskaia, Pablo Rojo, Clàudia Fortuny, Lars Navér, Christoph Rudin, Sophie Le Cœur, Alla Volokha, Vanessa Rouzier, Regina C.M. Succi, Annette H. Sohn, Azar Kariminia, Andrew Edmonds, Patricia Lelo, Samuel Ayaya, Patricia Ong'wen, Laura Jefferys, Sam Phiri, Mwangelwa Mubiana‐Mbewe, Shobna Sawry, Lorna Renner, Mariam Sylla, Mark J. Abzug, Myron J. Levin, James M. Oleske, Miriam Chernoff, Shirley Traite, Murli Purswani, Ellen G. Chadwick, Ali Judd, Valériane Leroy
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1005881

Liver-Enriched Gene 1, a Glycosylated Secretory Protein, Binds to FGFR and Mediates an Anti-stress Pathway to Protect Liver Development in Zebrafish
Cited by: 18
Author(s): Minjie Hu, Yun Bai, Chun Xia Zhang, Feng Liu, Zongbin Cui, Jun Chen, Jinrong Peng
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.03243-19

Influenza Virus Infection Induces a Narrow Antibody Response in Children but a Broad Recall Response in Adults
Cited by: 46
Author(s): Philip Meade, Guillermina Kuan, Shirin Strohmeier, Hannah E. Maier, Fatima Amanat, Ángel Balmaseda, Kimihito Ito, Ericka Kirkpatrick, Andres Javier, Lionel Gresh, Raffael Nachbagauer, Aubree Gordon, Florian Krammer
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1002170

Genome-Wide Association Study Identifies HLA-DP as a Susceptibility Gene for Pediatric Asthma in Asian Populations
Cited by: 118
Author(s): Emiko Noguchi, Hiromi Sanada, Tomomitsu Hirota, Kaori Ochiai, Yoshimasa Imoto, Masafumi Sakashita, Fumitake Kurosaka, Akira Akasawa, Shigemi Yoshihara, Noriko Kanno, Yumi Yamada, Naoki Shimojo, Yoichi Kohno, Yôichi Suzuki, Mi Jin Kang, Ji Won Kwon, Soo Jong Hong, Ken Inoue, Yu Ichi Goto, Fumio Yamashita, Takashi Asada, Hiroshi Hara, Ikuo Saito, Shigeharu Fujieda, Nobuyuki Hizawa, Terufumi Sakamoto, Hironori Masuko, Yusuke Nakamura, Ichiro Nomura, Mayumi Tamari, Tadao Arinami, Teruhiko Yoshida, Hirohisa Saito, Kenji Matsumoto
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pgen.1003495

High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates
Cited by: 239
Author(s): Gaurav Dugar, Alexander Herbig, Konrad U. Förstner, Nadja Heidrich, Richard Reinhardt, Kay Nieselt, Cynthia M. Sharma
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.1009420

A conserved role of the duplicated Masculinizer gene in sex determination of the Mediterranean flour moth, Ephestia kuehniella
Cited by: 12
Author(s): Sako Visser, Anna Voleníková, Petr Nguyen, Eveline C. Verhulst, František Marec
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1009001

Excess crossovers impede faithful meiotic chromosome segregation in C. elegans
Cited by: 19
Author(s): Jeremy Hollis, Marissa L. Glover, Aleesa J. Schlientz, Cori K. Cahoon, Bruce Bowerman, Sarah M. Wignall, Diana E. Libuda
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1007913

Dissecting the pathways coordinating patterning and growth by plant boundary domains
Cited by: 27
Author(s): Aude Maugarny-Calès, Millán Cortizo, Bernard Adroher, Néro Borrega, Beatriz Gonçalves, Géraldine Brunoud, Teva Vernoux, Nicolas Arnaud, Patrick Laufs
Software Mentions: 1
Published: almost 8 years ago

10.1523/ENEURO.0009-19.2019

Critical Analysis of Particle Detection Artifacts in Synaptosome Flow Cytometry
Cited by: 13
Author(s): Benjamin D. Hobson, Peter A. Sims
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1007897

A specialized MreB-dependent cell wall biosynthetic complex mediates the formation of stalk-specific peptidoglycan in Caulobacter crescentus
Cited by: 29
Author(s): Maria Billini, Jacob Biboy, Juliane Kühn, Waldemar Vollmer, Martin Thanbichler
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1008920

Developmental loss of neurofibromin across distributed neuronal circuits drives excessive grooming in Drosophila
Cited by: 11
Author(s): Lanikea B. King, Tamara Boto, Valentina Botero, Ari Aviles, Breanna M. Jomsky, Chevara Joseph, James A. Walker, Seth M. Tomchik
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1004167

Insertional Mutagenesis and Deep Profiling Reveals Gene Hierarchies and a Myc/p53-Dependent Bottleneck in Lymphomagenesis
Cited by: 18
Author(s): Camille Huser, Kathryn Gilroy, Jeroen de Ridder, Anna Kilbey, Gillian Borland, Nancy MacKay, Alma Jenkins, Margaret Bell, Paweł Herzyk, Louise van der Weyden, David J. Adams, Alistair G. Rust, Ewan R. Cameron, James C. Neil
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1008432

UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts
Cited by: 151
Author(s): Alex Diaz-Papkovich, Luke Anderson-Trocmé, Chief Ben-Eghan, Simon Gravel
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pgen.1007886

Narya, a RING finger domain-containing protein, is required for meiotic DNA double-strand break formation and crossover maturation in Drosophila melanogaster
Cited by: 8
Author(s): Cathleen M. Lake, Rachel J. Nielsen, Amanda M. Bonner, Salam Eche, Sanese Kania White-Brown, Kim S. McKim, R. Scott Hawley
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1007512

Discovery of a dual protease mechanism that promotes DNA damage checkpoint recovery
Cited by: 16
Author(s): Peter E. Burby, Zackary W. Simmons, Jeremy W. Schroeder, Lyle A. Simmons
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1006908

The nucleoid occlusion factor Noc controls DNA replication initiation in Staphylococcus aureus
Cited by: 40
Author(s): Ting Pang, Xindan Wang, Hoong Chuin Lim, Thomas G. Bernhardt, David Z. Rudner
Software Mentions: 1
Published: over 9 years ago

10.1186/s12937-015-0119-8

Body adiposity index performance in estimating body fat in a sample of severely obese Brazilian patients
Cited by: 16
Author(s): G. Belarmino, L.M. Horie, Priscila Sala, Raquel Susana Torrinhas, Steven B. Heymsfield, Dan Linetzky Waitzberg
Software Mentions: 1
Published: almost 11 years ago

10.3390/antibiotics9040177

Genomic Characterization of Antimicrobial Resistance, Virulence, and Phylogeny of the Genus Ochrobactrum
Cited by: 9
Author(s): Yael Yagel, S Ruth Sestito, Yair Motro, Anat Shnaiderman‐Torban, Boris Khalfin, Orly Sagi, Shiri Navon-Venezia, Amir Steinman, Jacob Moran-Gilad
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1008315

Mutations in ARL2BP, a protein required for ciliary microtubule structure, cause syndromic male infertility in humans and mice
Cited by: 18
Author(s): Abigail R. Moye, Nicola Bedoni, Jessica G. Cunningham, Urikhan Sanzhaeva, Eric S. Tucker, Peter H. Mathers, Virginie G. Peter, Mathieu Quinodoz, Liliana P Paris, Luisa Coutinho Santos, Pedro Camacho, Madeleine G. Purcell, Abbie C. Winkelmann, James A. Foster, Elena N. Pugacheva, Carlo Rivolta, Visvanathan Ramamurthy
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1000928

Genome-Wide Association Study of Lp-PLA2 Activity and Mass in the Framingham Heart Study
Cited by: 71
Author(s): Sunil Suchindran, D Rivedal, John R. Guyton, Tom Milledge, Xiaoyi Gao, Ashlee M. Benjamin, Jennifer Rowell, Geoffrey S. Ginsburg, Jeanette McCarthy
Software Mentions: 1
Published: over 16 years ago

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