cran: dendextend | Projects | Ecosyste.ms: Papers

10.1098/rspb.2018.2697

Beyond the visual: using metabarcoding to characterize the hidden reef cryptobiome
Cited by: 38
Author(s): Susana Carvalho, Eva Aylagas, Rodrigo Villalobos, Yasser Kattan, Michael L. Berumen, John K. Pearman
Software Mentions: 5
Published: over 5 years ago

10.3390/proteomes6030031

Regional Diversity in the Postsynaptic Proteome of the Mouse Brain
Cited by: 37
Author(s): Marcia Roy, Oksana Sorokina, Colin McLean, Silvia Tapia-González, Javier DeFelipe, J. Douglas Armstrong, Seth G. N. Grant
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-58576-5

Structural and functional differentiation of bacterial communities in post-coal mining reclamation soils of South Africa: bioindicators of soil ecosystem restoration
Cited by: 49
Author(s): Obinna T. Ezeokoli, Cornelius Carlos Bezuidenhout, Mark Maboeta, Damase P. Khasa, Rasheed Adeleke
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-67782-0

Elongating maize root: zone-specific combinations of polysaccharides from type I and type II primary cell walls
Cited by: 27
Author(s): Liudmila Kozlova, Alsu Nazipova, Oleg Gorshkov, Anna A. Petrova, Т. А. Горшкова
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-021-84860-z

Characterisation, identification, clustering, and classification of disease
Cited by: 17
Author(s): Anthony J Webster, Kezia Gaitskell, Iain Turnbull, B J Cairns, Robert Clarke
Software Mentions: 5
Published: over 3 years ago

10.1038/s41396-020-00794-w

Phage gene expression and host responses lead to infection-dependent costs of CRISPR immunity
Cited by: 17
Author(s): Sean Meaden, Loris Capria, Ellinor O. Alseth, Sylvain Gandon, Ambarish Biswas, Luca Lenzi, Stineke van Houte, Edze R. Westra
Software Mentions: 5
Published: almost 4 years ago

10.3390/ijms22073735

Interplay between Histone and DNA Methylation Seen through Comparative Methylomes in Rare Mendelian Disorders
Cited by: 6
Author(s): Guillaume Velasco, Damien Ulveling, Sophie Rondeau, Pauline Marzin, Motoko Unoki, Valérie Cormier‐Daire, Claire Francastel
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0237741

A step towards Balkan Capsicum annuum L. core collection: Phenotypic and biochemical characterization of 180 accessions for agronomic, fruit quality, and virus resistance traits
Cited by: 17
Author(s): Amol N. Nankar, Velichka Todorova, Ivanka Tringovska, Gancho Pasev, Vesela Radeva-Ivanova, Valentina Ivanova, D. Kostova
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2018.01002

Water Masses and Depth Structure Prokaryotic and T4-Like Viral Communities Around Hydrothermal Systems of the Nordic Seas
Cited by: 6
Author(s): Sven Le Moine Bauer, Anne Stensland, Frida Lise Daae, Ruth‐Anne Sandaa, Ingunn H. Thorseth, Ida Helene Steen, Helge K. Dahle
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2020.588739

Temperature Shift Between Vineyards Modulates Berry Phenology and Primary Metabolism in a Varietal Collection of Wine Grapevine
Cited by: 16
Author(s): Kelem Gashu, Noga Sikron Persi, Elyashiv Drori, Eran Harcavi, Nurit Agam, Amnon Bustan, Aaron Fait
Software Mentions: 4
Published: almost 4 years ago

10.3389/fpubh.2021.710985

Nanopore Sequencing Provides Rapid and Reliable Insight Into Microbial Profiles of Intensive Care Units
Cited by: 16
Author(s): Guilherme Marcelino Viana de Siqueira, Felipe Marcelo Pereira-dos-Santos, Rafael Silva‐Rocha, María-Eugenia Guazzaroni
Software Mentions: 4
Published: about 3 years ago

10.12688/wellcomeopenres.16320.2

Haplotype heterogeneity and low linkage disequilibrium reduce reliable prediction of genotypes for the ‑α3.7I form of α-thalassaemia using genome-wide microarray data
Cited by: 2
Author(s): Carolyne Ndila, Vysaul Nyirongo, Alexander Macharia, Anna E. Jeffreys, Kate Rowlands, Christina Hubbart, George B.J. Busby, Gavin Band, Rosalind M. Harding, Kirk A. Rockett, Thomas N. Williams
Software Mentions: 4
Published: almost 3 years ago

10.1186/s13059-017-1353-5

Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines
Cited by: 165
Author(s): Rajarshi Ghosh, Ninad Oak, Sharon E. Plon
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms9071411

Enterocin Cross-Resistance Mediated by ABC Transport Systems
Cited by: 4
Author(s): Claudia Teso-Pérez, Manuel Martínez‐Bueno, Juan Manuel Peralta‐Sánchez, Eva Valdivia, Mercedes Maqueda, María Esther Fárez-Vidal, Antonio Manuel Martín-Platero
Software Mentions: 4
Published: about 3 years ago

10.1186/s13059-020-02124-x

DNA polymerase stalling at structured DNA constrains the expansion of short tandem repeats
Cited by: 35
Author(s): Pierre Murat, Guillaume Guilbaud, Julian E. Sale
Software Mentions: 4
Published: about 4 years ago

10.3390/microorganisms8070987

Analysis of Tick Surface Decontamination Methods
Cited by: 13
Author(s): Angeline Hoffmann, Volker Fingerle, Matthias Noll
Software Mentions: 4
Published: about 4 years ago

10.1080/19490976.2020.1822729

Metagenomic analysis reveals distinct patterns of gut lactobacillus prevalence, abundance, and geographical variation in health and disease
Cited by: 20
Author(s): Tarini Shankar Ghosh, Jerome Arnoux, Paul W. O’Toole
Software Mentions: 4
Published: almost 4 years ago

10.3390/microorganisms8111631

Rapid Changes in Microbial Community Structures along a Meandering River
Cited by: 11
Author(s): Perrine Cruaud, Adrien Vigneron, Caetano C. Dorea, Manuel J. Rodriguez, Steve J. Charette
Software Mentions: 4
Published: almost 4 years ago

10.1099/mic.0.001016

A palette of fluorophores that are differentially accumulated by wild-type and mutant strains of Escherichia coli: surrogate ligands for profiling bacterial membrane transporters
Cited by: 14
Author(s): J. Enrique Salcedo-Sora, Srijan Jindal, Steve O’Hagan, Douglas B. Kell
Software Mentions: 4
Published: over 3 years ago

10.1111/jcmm.16222

The pioneer and differentiation factor FOXA2 is a key driver of yolk‐sac tumour formation and a new biomarker for paediatric and adult yolk‐sac tumours
Cited by: 13
Author(s): Wasco Wruck, Felix Bremmer, Mara Kotthoff, Alexander Fichtner, Margaretha A. Skowron, Stefan Schönberger, Gabriele Calaminus, Christian Vokuhl, David Pfister, Axel Heidenreich, Peter Albers, James Adjaye, Daniel Nettersheim
Software Mentions: 4
Published: over 3 years ago

10.1093/jxb/erx163

The diversity of CO2-concentrating mechanisms in marine diatoms as inferred from their genetic content
Cited by: 26
Author(s): Chen Shen, Christopher L. Dupont, Brian M. Hopkinson
Software Mentions: 4
Published: over 7 years ago

10.1098/rspb.2020.2244

Koala methylomes reveal divergent and conserved DNA methylation signatures of X chromosome regulation
Cited by: 3
Author(s): Devika Singh, Dan Sun, Andrew King, David E. Alquezar‐Planas, Rebecca N. Johnson, David Alvarez‐Ponce, Soojin V. Yi
Software Mentions: 4
Published: over 3 years ago

10.1098/rsos.150377

Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms
Cited by: 20
Author(s): Ronald M. Clouse, Gregorio V. Linchangco, Alexander M. Kerr, Robert W. Reid, Daniel Janies
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-020-67717-9

Diversity of a bacterial community associated with Cliona lobata Hancock and Gelliodes pumila (Lendenfeld, 1887) sponges on the South-East coast of India
Cited by: 5
Author(s): R. Meenatchi, Pownraj Brindangnanam, Saqib Hassan, Rathna Kumarasamy, George Seghal Kiran, Joseph Selvin
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-72535-0

Intensity harmonization techniques influence radiomics features and radiomics-based predictions in sarcoma patients
Cited by: 32
Author(s): Amandine Crombé, Michèle Kind, David Fadli, François Le Loarer, Antoîne Italiano, Xavier Buy, Olivier Saut
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12870-019-2012-7

Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling
Cited by: 18
Author(s): Noé Cochetel, Ryan Ghan, Haley S. Toups, Asfaw Degu, Richard L. Tillett, Karen Schlauch, Grant R. Cramer
Software Mentions: 4
Published: over 4 years ago

10.1186/s12864-019-6188-x

Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale
Cited by: 26
Author(s): Meryl Vila Nova, Kévin Durimel, Kévin La, Arnaud Felten, Philippe Bessières, Michel‐Yves Mistou, Mahendra Mariadassou, Nicolas Radomski
Software Mentions: 4
Published: almost 5 years ago

10.1136/openhrt-2018-000915

Lamin mutation location predicts cardiac phenotype severity: combined analysis of the published literature
Cited by: 14
Author(s): Gabriella Captur, Eloisa Arbustini, Petros Syrris, Dina Radenković, Benjamin O’Brien, William J. McKenna, James Moon
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-86536-0

Modular genome-wide gene expression architecture shared by early traits of osteoporosis and atherosclerosis in the Young Finns Study
Cited by: 6
Author(s): Binisha H. Mishra, Pashupati P. Mishra, Emma Raitoharju, Saara Marttila, Nina Mononen, Harri Sievänen, Jorma Viikari, Markus Juonala, Marika Laaksonen, Nina Hutri‐Kähönen, Mika Kähönen, Olli T. Raitakari, Terho Lehtimäki
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-019-5779-x

Genome-wide enhancer annotations differ significantly in genomic distribution, evolution, and function
Cited by: 39
Author(s): Mary Lauren Benton, Sai Charan Talipineni, Dennis Kostka, John A. Capra
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-016-1245-9

EnsCat: clustering of categorical data via ensembling
Cited by: 3
Author(s): Bertrand Clarke, Saeid Amiri, Jennifer Clarke
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.7681

Seasonal dynamics of mesozooplankton biomass over a sub‐Arctic continental shelf
Cited by: 1
Author(s): Marc J. Silberberger, Paul E. Renaud, Ketil Eiane, Henning Reiss
Software Mentions: 4
Published: over 3 years ago

10.1155/2021/3621677

A Data Mining-Based Analysis of Core Herbs on Different Patterns (Zheng) of Non-Small Cell Lung Cancer
Cited by: 2
Author(s): Xiangjun Qi, Zehuai Guo, Qianying Chen, Wanning Lan, Zhuangzhong Chen, Wenmin Chen, Lizhu Lin
Software Mentions: 4
Published: about 3 years ago

10.1093/femsec/fix126

Community structure of rare methanogenic archaea: insight from a single functional group
Cited by: 15
Author(s): Shuai Yang, Matthias Winkel, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: almost 7 years ago

10.3389/fcell.2021.717772

Human Induced Pluripotent Stem Cell-Derived Mesenchymal Stem Cells Acquire Rejuvenation and Reduced Heterogeneity
Cited by: 21
Author(s): Wasco Wruck, Nina Graffmann, Lucas‐Sebastian Spitzhorn, James Adjaye
Software Mentions: 4
Published: about 3 years ago

10.3389/fgene.2020.00891

Structural Variations Affecting Genes and Transposable Elements of Chromosome 3B in Wheats
Cited by: 13
Author(s): Romain De Oliveira, Hélène Rimbert, François Balfourier, Jonathan Kitt, Emeric Dynomant, Jan Vrána, Jaroslav Doležel, Federica Cattonaro, Etienne Paux, Frédéric Choulet
Software Mentions: 4
Published: about 4 years ago

10.1038/s42003-019-0306-9

Mechanistic insights into the evolution of DUF26-containing proteins in land plants
Cited by: 67
Author(s): Aleksia Vaattovaara, Benjamin Brandt, Sitaram Rajaraman, Omid Safronov, Andres Veidenberg, Markéta Luklová, Jaakko Kangasjärvi, Ari Löytynoja, Michael Hothorn, Jarkko Salojärvi, Michael Wrzaczek
Software Mentions: 4
Published: over 5 years ago

10.1016/j.celrep.2018.11.032

Cooperative Transcription Factor Induction Mediates Hemogenic Reprogramming
Cited by: 27
Author(s): Andreia Gomes, Ilia Kurochkin, Betty Chang, Michael G. Daniel, Kenneth Law, Namita Satija, Alexander Lachmann, Zichen Wang, Lino Ferreira, Avi Ma’ayan, Benjamin Chen, Dmitri Papatsenko, Ihor R. Lemischka, Kateri Moore, Carlos Filipe Pereira
Software Mentions: 4
Published: almost 6 years ago

10.1002/prca.202000012

Targeted Mass Spectrometry of a Clinically Relevant PSA Variant from Post‐DRE Urines for Quantitation and Genotype Determination
Cited by: 7
Author(s): Joseph J. Otto, Vanessa L Correll, Hampus A. Engstroem, Naomi L. Hitefield, Brian Main, Brenna Albracht, Teresa L. Johnson‐Pais, Yang Li, Michael A. Liss, Paul C. Boutros, Thomas Kislinger, Robin J. Leach, O. John Semmes, Julius O. Nyalwidhe
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-021-90058-0

A three-dimensional musculoskeletal model of the dog
Cited by: 18
Author(s): Heiko Stark, Martin S. Fischer, Alexander J. Hunt, Fletcher R. Young, Roger D. Quinn, Emanuel Andrada
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-020-3493-y

Self-analysis of repeat proteins reveals evolutionarily conserved patterns
Cited by: 4
Author(s): M. Merski, Krzysztof Młynarczyk, Jan Ludwiczak, Jakub Skrzeczkowski, Stanisław Dunin-Horkawicz, Maria W. Górna
Software Mentions: 3
Published: over 4 years ago

10.1128/JCM.02529-20

Assessing the Genetic Diversity of Austrian Corynebacterium diphtheriae Clinical Isolates, 2011 to 2019
Cited by: 9
Author(s): Justine Schaeffer, Steliana Huhulescu, Anna Stoeger, Franz Allerberger, Werner Ruppitsch
Software Mentions: 3
Published: over 3 years ago

10.1128/mBio.00505-19

Codon Usage Heterogeneity in the Multipartite Prokaryote Genome: Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry
Cited by: 17
Author(s): José Luis López, Mauricio Javier Lozano, Antonio Lagares, María Laura Fabre, Walter Omar Draghi, María Florencia Del Papa, Mariano Pistorio, Anke Becker, Daniel Wibberg, Andreas Schlüter, Alfred Pühler, Jochen Blom, Alexander Goesmann
Software Mentions: 3
Published: about 5 years ago

10.1007/s00248-020-01623-5

Microbial Community Characterizing Vermiculations from Karst Caves and Its Role in Their Formation
Cited by: 21
Author(s): Rosangela Addesso, Jose Luis Gonzalez-Pimentel, Ilenia Maria D’Angeli, Jo De Waele, Cesáreo Sáiz‐Jiménez, Valme Jurado, Ana Z. Miller, Beatriz Cubero, Giovanni Vigliottá, Daniela Baldantoni
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12862-019-1469-1

GC content of vertebrate exome landscapes reveal areas of accelerated protein evolution
Cited by: 14
Author(s): Raf Huttener, Lieven Thorrez, Thomas in‘t Veld, Mikaela Granvik, L. Snoeck, Leentje Van Lommel, Frans Schuit
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-46869-3

Gains and losses of metabolic function inferred from a phylotranscriptomic analysis of algae
Cited by: 5
Author(s): Falicia Goh, Justin Jeyakani, Phornpimon Tipthara, Amaury Cazenave-Gassiot, Rajoshi Ghosh, Nicholas Bogard, Zhenxuan Yeo, Gane Ka‐Shu Wong, Michael Melkonian, Markus R. Wenk, Neil D. Clarke
Software Mentions: 3
Published: about 5 years ago

10.3390/antibiotics9080508

A Quantitative Survey of Bacterial Persistence in the Presence of Antibiotics: Towards Antipersister Antimicrobial Discovery
Cited by: 21
Author(s): J. Enrique Salcedo-Sora, Douglas B. Kell
Software Mentions: 3
Published: about 4 years ago

10.1016/j.ajhg.2020.08.016

Unsupervised Clustering of Missense Variants in HNF1A Using Multidimensional Functional Data Aids Clinical Interpretation
Cited by: 23
Author(s): Sara Althari, Laeya Abdoli Najmi, Amanda J. Bennett, Ingvild Aukrust, Jana K. Rundle, Kevin Colclough, Janne Molnes, Alba Kaci, Sameena Nawaz, Timme van der Lugt, Neelam Hassanali, Anubha Mahajan, Anders Molven, Sian Ellard, Mark McCarthy, Lise Bjørkhaug, Pål Rasmus Njølstad, Anna L. Gloyn
Software Mentions: 3
Published: almost 4 years ago

10.1128/mSystems.00777-19

Complementing 16S rRNA Gene Amplicon Sequencing with Total Bacterial Load To Infer Absolute Species Concentrations in the Vaginal Microbiome
Cited by: 37
Author(s): Florencia A.T. Boshier, Sujatha Srinivasan, Anthony Lopez, Noah G. Hoffman, Sean Proll, David N. Fredricks, Joshua T. Schiffer
Software Mentions: 3
Published: over 4 years ago

10.1093/database/baab011

Development of a biomarker database toward performing disease classification and finding disease interrelations
Cited by: 2
Author(s): Shaikh Farhad Hossain, Ming Huang, Naoaki Ono, Aki Morita, Shigehiko Kanaya, Md. Altaf-Ul-Amin
Software Mentions: 3
Published: over 3 years ago

10.3389/fmed.2021.635547

Tracking the Origin of Austrian Human Brucellosis Cases Using Whole Genome Sequencing
Cited by: 14
Author(s): Justine Schaeffer, Sandra Revilla‐Fernández, Erwin Hofer, R. Posch, Anna Stoeger, Christoph Leth, F. Schmoll, Vesna Djordjević, Brankica Lakićević, Kazimir Matović, Peter Hufnagl, Alexander Indra, Franz Allerberger, Werner Ruppitsch
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2019.00891

Trichoderma Species Differ in Their Volatile Profiles and in Antagonism Toward Ectomycorrhiza Laccaria bicolor
Cited by: 66
Author(s): Yongbo Guo, Andrea Ghirardo, Baris Weber, Jörg‐Peter Schnitzler, J. Philipp Benz, Maaria Rosenkranz
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-78402-2

SARS-CoV-2 receptor ACE2 is co-expressed with genes related to transmembrane serine proteases, viral entry, immunity and cellular stress
Cited by: 29
Author(s): Wasco Wruck, James Adjaye
Software Mentions: 3
Published: almost 4 years ago

10.7554/eLife.10921

Tunable protein synthesis by transcript isoforms in human cells
Cited by: 222
Author(s): Stephen N. Floor, Jennifer A. Doudna
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0214227

A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia
Cited by: 31
Author(s): Nischay Mishra, Shamsudeen F. Fagbo, Abdulaziz N. Alagaili, Adam Nitido, Simon H. Williams, James Ng, Bohyun Lee, Abdulkareem Durosinlorun, Joel A. Garcia, Komal Jain, Vishal Kapoor, Jonathan H. Epstein, Thomas Briese, Ziad A. Memish, Kevin J. Olival, W. Ian Lipkin
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2018.00968

QTL Mapping and Validation of Adult Plant Resistance to Stripe Rust in Chinese Wheat Landrace Humai 15
Cited by: 38
Author(s): Fengping Yuan, Qingdong Zeng, Jianhui Wu, Qilin Wang, Zujun Yang, Bang-Ping Liang, Xinhong Chen
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2018.00798

Field-Based Metabolomics of Vitis vinifera L. Stems Provides New Insights for Genotype Discrimination and Polyphenol Metabolism Structuring
Cited by: 35
Author(s): Kévin Billet, Benjamin Houillé, Thomas Dugé de Bernonville, Sébastien Besseau, Audrey Oudin, Vincent Courdavault, Guillaume Delanoue, Laurence Guérin, Marc Clastre, Nathalie Giglioli-Guivarc’h, Arnaud Lanoue
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1008395

Bacteria use structural imperfect mimicry to hijack the host interactome
Cited by: 5
Author(s): Natalia Sánchez de Groot, M. C. Torrent
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.cub.2020.05.077

Input Connectivity Reveals Additional Heterogeneity of Dopaminergic Reinforcement in Drosophila
Cited by: 41
Author(s): Nils Otto, Markus William Pleijzier, Isabel C. Morgan, Amelia J. Edmondson-Stait, Konrad J. Heinz, Ildiko Stark, Georgia Dempsey, Masayoshi Ito, Ishaan Kapoor, Joseph Hsu, Philipp Schlegel, Alexander Shakeel Bates, Feng Li, Marta Costa, Kei Ito, Davi D. Bock, Gerald M. Rubin, Gregory Jefferis, Scott Waddell
Software Mentions: 3
Published: about 4 years ago

10.3390/v11050443

Unprecedented Diversity of Lactococcal Group 936 Bacteriophages Revealed by Amplicon Sequencing of the Portal Protein Gene
Cited by: 7
Author(s): Cyril Frantzen, Helge Holo
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-6118-y

Whole-genome DNA similarity and population structure of Plasmodiophora brassicae strains from Canada
Cited by: 27
Author(s): Afsaneh Sedaghatkish, B. D. Gossen, Fengqun Yu, Davoud Torkamaneh, Mary Ruth McDonald
Software Mentions: 3
Published: almost 5 years ago

10.3390/nu12030683

Changes in Intestinal Microbiota and Predicted Metabolic Pathways During Colonic Fermentation of Mango (Mangifera indica L.)—Based Bar Indigestible Fraction
Cited by: 19
Author(s): Wilbert Gutiérrez-Sarmiento, Sonia G. Sáyago-Ayerdi, Isabel Goñi, Federico Antonio Gutiérrez-Miceli, Miguel Abud‐Archila, José del Carmen Rejón Orantes, Reiner Rincón-Rosales, Betsy Anaid Peña-Ocaña, Víctor Manuel Ruíz-Valdiviezo
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-64399-1

Historic recombination in a durum wheat breeding panel enables high-resolution mapping of Fusarium head blight resistance quantitative trait loci
Cited by: 11
Author(s): Ehsan Sari, Ron Knox, Yuefeng Ruan, María Antonia Henríquez, Santosh Kumar, Andrew Burt, Richard D. Cuthbert, David Konkin, Sean Walkowiak, H. L. Campbell, Asheesh K. Singh, Jay P. Ross, Prabhath Lokuruge, Emma Hsueh, Kerry Boyle, Christine Sidebottom, Janet Condie, Shawn Yates, Curtis Pozniak, Pierre R. Fobert
Software Mentions: 2
Published: over 4 years ago

10.1007/s13205-020-02513-w

Comparative analysis of genomic- and EST-SSRs in European plum (Prunus domestica L.): implications for the diversity analysis of polyploids
Cited by: 9
Author(s): Rosanna Manco, Pasquale Chiaiese, Boris Basile, Giuseppe Colla
Software Mentions: 2
Published: almost 4 years ago

10.3390/genes12081233

Genetic Diversity and Population Structure of a Rhodes Grass (Chloris gayana) Collection
Cited by: 5
Author(s): Alemayehu Teressa Negawo, Meki S. Muktar, Yilikal Assefa, Jean Hanson, Alieu Sartie, Ermias Habte, Chris S. Jones
Software Mentions: 2
Published: about 3 years ago

10.3390/biology10050355

Characterization of Bottlenose Dolphin (Tursiops truncatus) Sperm Based on Morphometric Traits
Cited by: 2
Author(s): María Del Carmen Fuentes-Albero, Silvia Abril Sánchez, José Luis Ros-Santaella, Eliana Pintus, Chiara Luongo, Sara Ruiz Díaz, Carlos Barros García, María Jesús Sánchez Calabuig, Daniel García-Párraga, Francisco Alberto García Vázquez
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-71303-4

Recombination at the emergence of the pathogenic rabbit haemorrhagic disease virus Lagovirus europaeus/GI.2
Cited by: 30
Author(s): Joana Abrantes, Clément Droillard, Ana M. Lopes, Evelyne Lemaitre, Pierrick Lucas, Yannick Blanchard, Stéphane Marchandeau, Pedro J. Esteves, Ghislaine Le Gall-Reculé
Software Mentions: 2
Published: about 4 years ago

10.1093/molbev/msab053

Adaptive Admixture of HLA Class I Allotypes Enhanced Genetically Determined Strength of Natural Killer Cells in East Asians
Cited by: 15
Author(s): Zuhu Deng, Junjie Zhen, Genelle F Harrison, Guobin Zhang, Rui Chen, Ge Sun, Qi Yu, Neda Nemat-Gorgani, Lisbeth A. Guethlein, Liumei He, Mingzhong Tang, Xiaojiang Gao, Siqi Cai, William H. Palmer, Jonathan A. Shortt, Christopher R. Gignoux, Mary Carrington, Hong-yan Zou, Peter Parham, Wen‐Xu Hong, Paul J. Norman
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.580782

Genetic Diversity and Population Structure of Asian and European Common Wheat Accessions Based on Genotyping-By-Sequencing
Cited by: 27
Author(s): Xin Yang, Binwen Tan, Haijiao Liu, Wei Zhu, Lili Xu, Yi Wang, Xing Fan, Sha Li, Haiqin Zhang, Jian Zeng, Dandan Wu, Yunfeng Jiang, Xigui Hu, Guoyue Chen, Yonghong Zhou, Houyang Kang
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12870-020-02722-8

Population structure of Nepali spring wheat (Triticum aestivum L.) germplasm
Cited by: 7
Author(s): Kamal Khadka, Davoud Torkamaneh, Mina Kaviani, François Belzile, Manish N. Raizada, Alireza Navabi
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-81790-8

Pre- and postmenopausal women have different core urinary microbiota
Cited by: 19
Author(s): Nadia Ammitzbøll, Benedikt Bau, Caspar Bundgaard‐Nielsen, Annemarie Brusen Villadsen, Ann Maria Jensen, Peter Leutscher, Karin Glavind, Søren Hagstrøm, Louise Thomsen Schmidt Arenholt, Susanne Sørensen
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0223517

Grouping of complex substances using analytical chemistry data: A framework for quantitative evaluation and visualization
Cited by: 18
Author(s): Melis Onel, Burcu Beykal, Kyle Ferguson, Weihsueh A. Chiu, Thomas J. McDonald, Lan Zhou, John S. House, Fred A. Wright, David A. Sheen, Ivan Rusyn, Efstratios N. Pistikopoulos
Software Mentions: 2
Published: almost 5 years ago

10.3390/plants9030405

De novo Sequencing and Analysis of Salvia hispanica Tissue-Specific Transcriptome and Identification of Genes Involved in Terpenoid Biosynthesis
Cited by: 9
Author(s): James Wimberley, Joseph Cahill, Hagop S. Atamian
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2018.03021

Metabolomic Fingerprinting of Salinispora From Atlantic Oceanic Islands
Cited by: 15
Author(s): Anelize Bauermeister, Karen Velasco‐Alzate, Tiago Dias, Helena Macedo, Elthon G. Ferreira, Paula Christine Jimenez, Tito Monteiro da Cruz Lotufo, Norberto P. Lopes, Susana P. Gaudêncio, Letı́cia V. Costa-Lotufo
Software Mentions: 2
Published: almost 6 years ago

10.1186/s40793-016-0172-8

Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216T
Cited by: 14
Author(s): Elleke Fenna Bosma, Jasper J. Koehorst, Sacha A. F. T. van Hijum, Bernadet Renckens, Bastienne Vriesendorp, Antonius H. P. van de Weijer, Peter J. Schaap, Willem M. de Vos, John van der Oost, Richard van Kranenburg
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0175285

High density mapping and haplotype analysis of the major stem-solidness locus SSt1 in durum and common wheat
Cited by: 20
Author(s): Kirby T. Nilsen, Amidou N’Diaye, P. R. MacLachlan, J. M. Clarke, Yuefeng Ruan, Richard D. Cuthbert, R. E. Knox, Krystalee Wiebe, Aron T. Cory, Sean Walkowiak, Brian L. Beres, R. J. Graf, F. R. Clarke, Andrew Sharpe, Assaf Distelfeld, Curtis Pozniak
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1009453

A human coronavirus evolves antigenically to escape antibody immunity
Cited by: 166
Author(s): Rachel Eguia, Katharine H.D. Crawford, Terry Stevens-Ayers, Laurel Kelnhofer-Millevolte, Alexander L. Greninger, Janet A. Englund, Michael Boeckh, Jesse D. Bloom
Software Mentions: 2
Published: over 3 years ago

10.1534/genetics.116.195776

Pervasive Behavioral Effects of MicroRNA Regulation in <i>Drosophila</i>
Cited by: 27
Author(s): João Picão-Osório, Inês Lago-Baldaia, Pedro Patraquim, Claudio R. Alonso
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.62576

The connectome of the adult Drosophila mushroom body provides insights into function
Cited by: 200
Author(s): Feng Li, Jack Lindsey, Elizabeth C. Marin, Nils Otto, Marisa Dreher, Georgia Dempsey, Ildiko Stark, Alexander Shakeel Bates, Markus William Pleijzier, Philipp Schlegel, Aljoscha Nern, Shin-ya Takemura, Nils Eckstein, Tansy Yang, Audrey Francis, Amalia Braun, Ruchi Parekh, Marta Costa, Louis K. Scheffer, Yoshinori Aso, Gregory Jefferis, L. F. Abbott, Ashok Litwin-Kumar, Scott Waddell, Gerald M. Rubin
Software Mentions: 2
Published: almost 4 years ago

10.3389/fnins.2021.680530

The Gene Expression Profile of the Song Control Nucleus HVC Shows Sex Specificity, Hormone Responsiveness, and Species Specificity Among Songbirds
Cited by: 10
Author(s): Meng-Ching Ko, Carolina Frankl-Vilches, Antje Bakker, Manfred Gahr
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-20889-x

Updating the genomic taxonomy and epidemiology of Campylobacter hyointestinalis
Cited by: 23
Author(s): David A. Wilkinson, Andrew J. O’Donnell, Rukhshana N. Akhter, Ahmed Fayaz, Hamish J. Mack, Lynn Rogers, Patrick J. Biggs, Nigel P. French, Anne C. Midwinter
Software Mentions: 2
Published: over 6 years ago

10.3390/md17040196

Integrating Molecular Network and Culture Media Variation to Explore the Production of Bioactive Metabolites by Vibrio diabolicus A1SM3
Cited by: 2
Author(s): Natalia Conde-Martínez, Anelize Bauermeister, Alan César Pilon, Norberto Peporine Lopes, Edisson Tello
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-41017-3

Characterization of the rumen and fecal microbiome in bloated and non-bloated cattle grazing alfalfa pastures and subjected to bloat prevention strategies
Cited by: 18
Author(s): Elnaz Azad, Hooman Derakhshani, Robert J. Forster, Robert J. Gruninger, S. N. Acharya, Tim A. McAllister, Ehsan Khafipour
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1007428

Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii
Cited by: 37
Author(s): Jian Jiao, Meng Ni, Biliang Zhang, Ziding Zhang, J. Peter W. Young, Ting-Fung Chan, Wen Xin Chen, Hon‐Ming Lam, Chang Fu Tian
Software Mentions: 2
Published: over 6 years ago

10.3390/biom10030378

Targeted Isolation of Lignans from Trachelospermum asiaticum Using Molecular Networking and Hierarchical Clustering Analysis
Cited by: 4
Author(s): Jiho Lee, Yang Hong, Hyogeun Jeong, Junghwan Kim, Heejung Yang
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2019.00952

Agronomic Performance and Nitrogen Fixation of Heirloom and Conventional Dry Bean Varieties Under Low-Nitrogen Field Conditions
Cited by: 30
Author(s): Jennifer Wilker, Alireza Navabi, Istvan Rajcan, Frédéric Marsolais, B. D. Hill, Davoud Torkamaneh, K. Peter Pauls
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0188798

Distinctness of Brazilian common bean cultivars with carioca and black grain by means of morphoagronomic and molecular descriptors
Cited by: 16
Author(s): Jéssica Delfini, Vânia Moda-Cirino, Claudete de Fátima Ruas, José dos Santos Neto, Paulo Maurício Ruas, Juliana Sawada Buratto, Eduardo Augusto Ruas, Leandro Simões Azeredo Gonçalves
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41396-021-00921-1

Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
Cited by: 21
Author(s): Sean Carim, Ashley L. Azadeh, Alexey E. Kazakov, Morgan N. Price, Peter J. Walian, Lauren M. Lui, Torben Nielsen, Romy Chakraborty, Adam M. Deutschbauer, Vivek K. Mutalik, Adam P. Arkin
Software Mentions: 1
Published: over 3 years ago

10.5713/ajas.18.0262

Changes in the ruminal fermentation and bacterial community structure by a sudden change to a high-concentrate diet in Korean domestic ruminants
Cited by: 23
Author(s): Mingyung Lee, Sinyong Jeong, Jakyeom Seo, Seongwon Seo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0239776

Inside the black box of comparative national healthcare performance in 35 OECD countries: Issues of culture, systems performance and sustainability
Cited by: 8
Author(s): Jeffrey Braithwaite, Yvonne Tran, Louise A. Ellis, Johanna I. Westbrook
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2016.00730

Experimental Warming Decreases the Average Size and Nucleic Acid Content of Marine Bacterial Communities
Cited by: 28
Author(s): Tamara Megan Huete‐Stauffer, Néstor Arandia-Gorostidi, Laura Alonso‐Sáez, Xosé Anxelu G. Morán
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-86718-w

Identifying unknown Indian wolves by their distinctive howls: its potential as a non-invasive survey method
Cited by: 9
Author(s): Sougata Sadhukhan, Holly Root‐Gutteridge, Bilal Habib
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.01483

NAuRA: Genomic Tool to Identify Staphylococcal Enterotoxins in Staphylococcus aureus Strains Responsible for FoodBorne Outbreaks
Cited by: 18
Author(s): Déborah Merda, Arnaud Felten, Noémie Vingadassalon, Sarah Denayer, Yacine Titouche, Lucia Decastelli, Bernadette B Hickey, Christos Kourtis, H. Daskalov, Michel‐Yves Mistou, Jacques‐Antoine Hennekinne
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-019-54078-1

Exploring novel secondary metabolites from natural products using pre-processed mass spectral data
Cited by: 6
Author(s): Hyun Woo Kim, Seong Yeon Choi, Hyeon Seok Jang, Byeol Ryu, Sang Hyun Sung, Heejung Yang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0243238

Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers
Cited by: 24
Author(s): Wilson Nkhata, Hussein Shimelis, Rob Melis, Rowland Chirwa, Tenyson Mzengeza, Isack Mathew, Admire Shayanowako
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-018-5243-3

Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective
Cited by: 43
Author(s): Jillian Rumore, Lorelee Tschetter, Ashley Kearney, Rima Kandar, Rachel McCormick, Matthew Walker, Christy-Lynn Peterson, Aleisha Reimer, Céline Nadon
Software Mentions: 1
Published: almost 6 years ago

10.18632/aging.202524

Identification of core genes for early diagnosis and the EMT modulation of ovarian serous cancer by bioinformatics perspective
Cited by: 5
Author(s): Yanna Zhang, Xun Wang, Xiancheng Chen
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.58026

Multiplexed measurement of variant abundance and activity reveals VKOR topology, active site and human variant impact
Cited by: 45
Author(s): Melissa A Chiasson, Nathan J Rollins, Jason J. Stephany, Katherine A. Sitko, Kenneth A. Matreyek, Marta Verby, Song Sun, Frederick P. Roth, Daniel DeSloover, Daniel Marks, Allan E. Rettie, Douglas M. Fowler
Software Mentions: 1
Published: about 4 years ago

10.1186/s12863-020-00914-7

Assessing the genetic diversity of cowpea [Vigna unguiculata (L.) Walp.] germplasm collections using phenotypic traits and SNP markers
Cited by: 29
Author(s): Nelia Nkhoma, Hussein Shimelis, Mark Laing, Admire Shayanowako, Isack Mathew
Software Mentions: 1
Published: about 4 years ago

10.3390/metabo11060392

Serum Metabolites Responding in a Dose-Dependent Manner to the Intake of a High-Fat Meal in Normal Weight Healthy Men Are Associated with Obesity
Cited by: 4
Author(s): Ueli Bütikofer, David Burnand, Reto Portmann, Carola Blaser, Flurina Schwander, Katrin A. Kopf-Bolanz, Kurt Laederach, René Badertscher, Barbara Walther, Guy Vergères
Software Mentions: 1
Published: over 3 years ago

Projects: cran: dendextend

Papers Mentioning dendextend 201