cran: corrplot | Projects | Ecosyste.ms: Papers

10.1186/s13046-021-01938-2

Chemotherapy-induced CDA expression renders resistant non-small cell lung cancer cells sensitive to 5′-deoxy-5-fluorocytidine (5′-DFCR)
Cited by: 7
Author(s): Yanyun Gao, Philipp Zens, Min Su, Camila Anna Gemperli, Haitang Yang, Haibin Deng, Yang Zhang, Duo Xu, Sean Hall, Sabina Berezowska, Patrick Dorn, Ren‐Wang Peng, Ralph A. Schmid, Wenxiang Wang, Thomas Marti
Software Mentions: 7
Published: over 3 years ago

10.1016/j.celrep.2021.109228

Replicative senescence dictates the emergence of disease-associated microglia and contributes to Aβ pathology
Cited by: 86
Author(s): Yanling Hu, Gemma Fryatt, Mohammadmersad Ghorbani, Juliane Obst, David A. Menassa, Maria Margarida, Tim A.O. Muntslag, Adrián Olmos-Alonso, Monica Guerrero-Carrasco, Daniel Thomas, Mark S. Cragg, Diego Gómez-Nicola
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-020-79370-3

Seagrasses provide a novel ecosystem service by trapping marine plastics
Cited by: 69
Author(s): Anna Sánchez-Vidal, Miquel Canals, William P. de Haan, Javier Romero, Marta Veny
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41419-021-03540-y

Metabolomic analyses of COVID-19 patients unravel stage-dependent and prognostic biomarkers
Cited by: 99
Author(s): François‐Xavier Danlos, Claudia Grajeda‐Iglesias, Sylvère Durand, Allan Sauvat, Mathilde Roumier, D. Cantin, Emeline Colomba, Julien Rohmer, Fanny Pommeret, Giulia Baciarello, Christophe Willekens, Marc Vasse, Franck Griscelli, Jean-Eudes Fahrner, Anne-Gaëlle Goubet, Agathe Dubuisson, Lisa Derosa, Nitharsshini Nirmalathasan, Delphine Bredel, Séverine Mouraud, Caroline Pradon, Annabelle Stoclin, Flore Rozenberg, Jérôme Duchemin, Georges Jourdi, Syrine Ellouze, Françoise Levavasseur, Laurence Albigès, Jean‐Charles Soria, Fabrice Barlési, Éric Solary, Fabrice André, Frédéric Pène, Félix Ackerman, Luc Mouthon, Laurence Zitvogel, Aurélien Marabelle, Jean‐Marie Michot, Michaëla Fontenay, Guido Kroemer
Software Mentions: 7
Published: over 3 years ago

10.1186/s12862-020-1577-y

Macroevolutionary bursts and constraints generate a rainbow in a clade of tropical birds
Cited by: 14
Author(s): Jon T. Merwin, Glenn F. Seeholzer, Brian Tilston Smith
Software Mentions: 7
Published: over 4 years ago

10.3389/fonc.2021.632459

Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
Cited by: 3
Author(s): Ruiliang Wang, Zongtai Zheng, Shun Mao, Wentao Zhang, Ji Liu, Cheng Li, Shenghua Liu, Xudong Yao
Software Mentions: 7
Published: over 3 years ago

10.3389/fcell.2021.658642

HNRNPA2B1 Affects the Prognosis of Esophageal Cancer by Regulating the miR-17-92 Cluster
Cited by: 21
Author(s): Kexin Li, Jiongyu Chen, Xiaoying Lou, Yiling Li, Benheng Qian, Danfei Xu, Yue Wu, Shaohui Ma, Donghong Zhang, Wei Cui
Software Mentions: 7
Published: over 3 years ago

10.3389/fcell.2021.651593

An Immune-Related Long Non-Coding RNA Signature to Predict the Prognosis of Ewing’s Sarcoma Based on a Machine Learning Iterative Lasso Regression
Cited by: 4
Author(s): Enhui Ren, Yajun Deng, Wenhua Yuan, Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Qiqi Xie
Software Mentions: 7
Published: over 3 years ago

10.18632/aging.102200

Identification and validation of four hub genes involved in the plaque deterioration of atherosclerosis
Cited by: 12
Author(s): Peipei Chen, Yuexin Chen, Wei Wu, Lianfeng Chen, Xufei Yang, Shuyang Zhang
Software Mentions: 7
Published: about 5 years ago

10.3389/fmolb.2021.665222

Identification of the m6A RNA Methylation Regulators WTAP as a Novel Prognostic Biomarker and Genomic Alterations in Cutaneous Melanoma
Cited by: 12
Author(s): Ziyi Feng, Ting Wang, Xin Su, Shu Guo
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0225216

Abundance of ethnically biased microsatellites in human gene regions
Cited by: 3
Author(s): Nicholas A. Kinney, Lin Kang, Laurel Eckstrand, Arichanah Pulenthiran, Peter Samuel, Ramu Anandakrishnan, Robin Varghese, Pawel Michalak, Harold R. Garner
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0231773

Perceived socio-economic impacts of the marbled crayfish invasion in Madagascar
Cited by: 19
Author(s): Ranja Andriantsoa, Julia P. G. Jones, Vlad Achimescu, Heriniaina Randrianarison, Miary Raselimanana, Manjary Andriatsitohaina, Jeanne Rasamy, Frank Lyko
Software Mentions: 7
Published: over 4 years ago

10.3389/fbioe.2020.00592

Immune and Clinical Features of CD96 Expression in Glioma by in silico Analysis
Cited by: 21
Author(s): Qiang Zhang, Hua Zhong, Yinchun Fan, Qian Liu, Jiancheng Song, Shengtao Yao, Fang Cao
Software Mentions: 7
Published: over 4 years ago

10.3389/fcell.2021.668810

Novel Molecular Subtypes and Related Score Based on Histone Acetylation Modification in Renal Clear Cell Carcinoma
Cited by: 3
Author(s): Qianqian Wang, Ting Xiang, Ling Yu, Junping Wen, Fang Liu, Dong Yang, Wei Wu, Ling Hu
Software Mentions: 7
Published: about 3 years ago

10.3389/fonc.2020.553399

CD8+ T Cell Co-Expressed Genes Correlate With Clinical Phenotype and Microenvironments of Urothelial Cancer
Cited by: 20
Author(s): Yutao Wang, Kexin Yan, Jiaxing Lin, Yang Liu, Jianfeng Wang, Xuejie Li, Xinxin Li, Zhixiong Hua, Zhenhua Zheng, Jianxiu Shi, Siqing Sun, Jianbin Bi
Software Mentions: 7
Published: about 4 years ago

10.3389/fmicb.2019.02621

Influence of Various Processing Parameters on the Microbial Community Dynamics, Metabolomic Profiles, and Cup Quality During Wet Coffee Processing
Cited by: 31
Author(s): Sophia Jiyuan Zhang, Florac De Bruyn, Vasileios Pothakos, Gonzalo F Contreras, Z. Y. Cai, Cyril Moccand, Stefan Weckx, Luc De Vuyst
Software Mentions: 7
Published: about 5 years ago

10.1038/srep39527

Synergetic effects of DNA methylation and histone modification during mouse induced pluripotent stem cell generation
Cited by: 13
Author(s): Guiying Wang, Rong Weng, Yuanyuan Lan, Xudong Guo, Qidong Liu, Xiaoqin Liu, Chenqi Lu, Jiuhong Kang
Software Mentions: 7
Published: almost 8 years ago

10.3389/fmicb.2019.02359

Annual Protist Community Dynamics in a Freshwater Ecosystem Undergoing Contrasted Climatic Conditions: The Saint-Charles River (Canada)
Cited by: 21
Author(s): Perrine Cruaud, Adrien Vigneron, Marie‐Stéphanie Fradette, Caetano C. Dorea, Alexander I. Culley, Manuel J. Rodriguez, Steve J. Charette
Software Mentions: 7
Published: about 5 years ago

10.3389/fmicb.2019.02286

Yeasts of Burden: Exploring the Mycobiome–Bacteriome of the Piglet GI Tract
Cited by: 35
Author(s): Ann M. Arfken, Juli Foster Frey, Timothy Ramsay, Katie Lynn Summers
Software Mentions: 7
Published: about 5 years ago

10.3389/fmicb.2020.00765

Exploring the Relationship Among Divergence Time and Coding and Non-coding Elements in the Shaping of Fungal Mitochondrial Genomes
Cited by: 10
Author(s): Paula Luize Camargos Fonseca, Fernanda Badotti, Ruth B De-Paula, Daniel S. Araújo, Dener Eduardo Bortolini, Luiz-Eduardo Del-Bem, Vasco Azevedo, Bertram Brenig, Eric Roberto Guimarães Rocha Aguiar, Aristóteles Goés-Neto
Software Mentions: 7
Published: over 4 years ago

10.1002/edm2.191

Sex and oestrogen receptor β have modest effects on gene expression in the mouse brain posterior cortex
Cited by: 1
Author(s): Jasmine A. Fels, Gabriella Casalena, Giovanni Manfredi
Software Mentions: 7
Published: about 4 years ago

10.3390/nu12113524

Metabolic Responses to Butyrate Supplementation in LF- and HF-Fed Mice Are Cohort-Dependent and Associated with Changes in Composition and Function of the Gut Microbiota
Cited by: 8
Author(s): Sun Hye Lee, Trina A. Knotts, Michael L. Goodson, Mariana Barboza, Elyse V. Wudeck, Grace England, Helen E. Raybould
Software Mentions: 7
Published: about 4 years ago

10.1186/s12284-019-0305-y

Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis
Cited by: 19
Author(s): S. Ghosal, Carlos Casal, Fergie Ann Quilloy, Endang M. Septiningsih, Merlyn S. Mendioro, Shalabh Dixit
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0076051

Alterations in miRNA Levels in the Dentate Gyrus in Epileptic Rats
Cited by: 79
Author(s): Anna Bot, Konrad J. Dębski, Katarzyna Łukasiuk
Software Mentions: 7
Published: about 11 years ago

10.7717/peerj.11018

Integrated analysis of immune-related long noncoding RNAs as diagnostic biomarkers in psoriasis
Cited by: 13
Author(s): Feixiang Fan, Zhen Huang, Yongfeng Chen
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0227434

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing
Cited by: 237
Author(s): Andrei Prodan, Valentina Tremaroli, Harald Brolin, Aeilko H. Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 7
Published: almost 5 years ago

10.1186/s42523-021-00092-6

Metatranscriptomic analyses reveal ruminal pH regulates fiber degradation and fermentation by shifting the microbial community and gene expression of carbohydrate-active enzymes
Cited by: 15
Author(s): Meng M. Li, Robin R. White, Le Luo Guan, Laura Harthan, M.D. Hanigan
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-020-73338-z

Mid-infrared spectroscopic screening of metabolic alterations in stress-exposed gilthead seabream (Sparus aurata)
Cited by: 4
Author(s): Cláudia Raposo de Magalhães, Raquel Carrilho, Denise Schrama, Marco Cerqueira, Ana M. Rosa da Costa, Pedro M. Rodrigues
Software Mentions: 7
Published: about 4 years ago

10.1186/s40104-021-00601-2

Supplementation of a lacto-fermented rapeseed-seaweed blend promotes gut microbial- and gut immune-modulation in weaner piglets
Cited by: 13
Author(s): Yan Hui, Paulina Tamez-Hidalgo, Tomasz Cieplak, Gizaw Dabessa Satessa, Witold Kot, Søren Kjærulff, Mette Olaf Nielsen, Dennis Sandris Nielsen, Łukasz Krych
Software Mentions: 7
Published: over 3 years ago

10.1074/jbc.RA119.008853

Transcriptional profiling of single fiber cells in a transgenic paradigm of an inherited childhood cataract reveals absence of molecular heterogeneity
Cited by: 4
Author(s): Suraj P. Bhat, Rajendra K. Gangalum, Dongjae Kim, Serghei Mangul, Raj K. Kashyap, Xinkai Zhou, David Elashoff
Software Mentions: 7
Published: about 5 years ago

10.3389/fmolb.2020.562441

Novel Molecular Subtypes Associated With 5mC Methylation and Their Role in Hepatocellular Carcinoma Immunotherapy
Cited by: 12
Author(s): Zhuomao Mo, Zhirui Cao, Shaoju Luo, Yan Chen, Shijun Zhang
Software Mentions: 7
Published: about 4 years ago

10.3389/fonc.2020.01444

Development and Validation of an m6A RNA Methylation Regulator-Based Signature for Prognostic Prediction in Cervical Squamous Cell Carcinoma
Cited by: 32
Author(s): Jianji Pan, Lichao Xu, Hongda Pan
Software Mentions: 7
Published: over 4 years ago

10.1002/jcsm.12665

Myogenesis modelled by human pluripotent stem cells: a multi‐omic study of Duchenne myopathy early onset
Cited by: 28
Author(s): Virginie Mournetas, Emmanuelle Massouridès, Jean-Baptiste Dupont, Étienne Kornobis, Hélène Polveche, Margot Jarrige, Alan R L Dorval, Maxime R. F. Gosselin, Antigoni Manousopoulou, Spiros D. Garbis, Dariusz C. Górecki, Christian Pinset
Software Mentions: 7
Published: almost 4 years ago

10.3389/fmicb.2020.01405

Denosumab Regulates Gut Microbiota Composition and Cytokines in Dinitrobenzene Sulfonic Acid (DNBS)-Experimental Colitis
Cited by: 7
Author(s): Azin Khafipour, Nour Eissa, Peris M. Munyaka, Mohammad Fazle Rabbi, Kunal Kapoor, Laëtitia Kermarrec, Ehsan Khafipour, Çharles N. Bernstein, Jean–Eric Ghia
Software Mentions: 6
Published: over 4 years ago

10.1155/2021/8842105

Comparison of the Fatty Acid Metabolism Pathway in Pan-Renal Cell Carcinoma: Evidence from Bioinformatics
Cited by: 1
Author(s): Ping Wu, Yingkun Xu, Jiayi Li, Xiaowei Li, Peizhi Zhang, Ningke Ruan, Cong Zhang, Panpan Sun, Qifei Wang, Guangzhen Wu
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0102079

Harnessing Gene Expression Networks to Prioritize Candidate Epileptic Encephalopathy Genes
Cited by: 25
Author(s): Karen Oliver, Vesna Lukić, Natalie Thorne, Samuel F. Berkovic, Ingrid E. Scheffer, Melanie Bahlo
Software Mentions: 6
Published: over 10 years ago

10.1242/dmm.041947

Temporal evolution of the microbiome, immune system, and epigenome with disease progression in ALS mice
Cited by: 44
Author(s): Claudia Figueroa‐Romero, Kai Guo, Benjamin J. Murdock, Ximena Paez-Colasante, Christine M. Bassis, Kristen A. Mikhail, Kristen D. Raue, Matthew C. Evans, Ghislaine F. Taubman, Andrew J. McDermott, Phillipe D. O’Brien, Masha G. Savelieff, Junguk Hur, Eva L. Feldman
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0221058

Relations of advanced glycation endproducts and dicarbonyls with endothelial dysfunction and low-grade inflammation in individuals with end-stage renal disease in the transition to renal replacement therapy: A cross-sectional observational study
Cited by: 20
Author(s): Remy J H Martens, Natascha J. H. Broers, Bernard Canaud, Maarten H. L. Christiaans, T. Cornelis, Adelheid Gauly, Marc Hermans, Constantijn Konings, Frank M. van der Sande, Jean L.J.M. Scheijen, Frank Stifft, Joris J. J. M. Wirtz, Jeroen P. Kooman, Casper G. Schalkwijk
Software Mentions: 6
Published: over 5 years ago

10.1128/AEM.02220-20

Influence of Spatial Scale on Structure of Soil Bacterial Communities across an Arctic Landscape
Cited by: 5
Author(s): Lucie Malard, Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, David A. Pearce
Software Mentions: 6
Published: almost 4 years ago

10.1155/2020/8974793

Comprehensive Analysis of Tumor-Infiltrating Immune Cells and Relevant Therapeutic Strategy in Esophageal Cancer
Cited by: 14
Author(s): Guangrong Lu, Liping Chen, Shengjie Wu, Yuao Feng, Tiesu Lin
Software Mentions: 6
Published: over 4 years ago

10.1186/s12889-020-09566-9

Prioritisation for future surveillance, prevention and control of 98 communicable diseases in Belgium: a 2018 multi-criteria decision analysis study
Cited by: 10
Author(s): Sofieke Klamer, Nina Van Goethem, Daniel Rhys Thomas, Els Duysburgh, Toon Braeye, Sophie Quoilin
Software Mentions: 6
Published: almost 4 years ago

10.18632/aging.202589

The aging-related risk signature in colorectal cancer
Cited by: 40
Author(s): Taohua Yue, Shanwen Chen, Jing Zhu, Shuqin Guo, Zhihao Huang, Pengyuan Wang, Shuai Zuo, Yucun Liu
Software Mentions: 6
Published: over 3 years ago

10.1186/s41065-020-00169-3

Identification of differentially expressed genes, signaling pathways and immune infiltration in rheumatoid arthritis by integrated bioinformatics analysis
Cited by: 8
Author(s): Yanzhi Ge, Li Zhou, Zuxiang Chen, Yingying Mao, Ting Li, Peijian Tong
Software Mentions: 6
Published: almost 4 years ago

10.1016/j.molmet.2020.101067

Gut microbiota impairs insulin clearance in obese mice
Cited by: 24
Author(s): Kevin P. Foley, Soumaya Zlitni, Brittany M. Duggan, Nicole G. Barra, Fernando F. Anhê, Joseph F. Cavallari, Brandyn D. Henriksbo, Cassandra Y. Chen, Michael Huang, Trevor C. Lau, Roxanne Plante, Michael Schwab, André Marette, Jonathan D. Schertzer
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12894-021-00880-x

Cross-talk and clinical value of m[superscript 6]A regulatory gene in bladder cancer
Cited by: 0
Author(s): Benzheng Zhou, Qin Luo, Ye Zhang
Software Mentions: 6
Published: about 3 years ago

10.3390/genes11111387

GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces
Cited by: 10
Author(s): Mónica Rodríguez, Alessandro Scintu, Chiara M. Posadinu, Youqiang Xu, Cuong Nguyen, Honghe Sun, Elena Bitocchi, Elisa Bellucci, Roberto Papa, Zhangjun Fei, James J. Giovannoni, Domenico Rau, Giovanna Attene
Software Mentions: 6
Published: almost 4 years ago

10.3390/genes11060623

Computational Analysis of Transcriptomic and Proteomic Data for Deciphering Molecular Heterogeneity and Drug Responsiveness in Model Human Hepatocellular Carcinoma Cell Lines
Cited by: 3
Author(s): Panagiotis Agioutantis, Heleni Loutrari, Fragiskos N. Kolisis
Software Mentions: 6
Published: over 4 years ago

10.1007/s00125-019-05032-3

Clinical and genetic correlates of islet-autoimmune signatures in juvenile-onset type 1 diabetes
Cited by: 19
Author(s): Laura A. Claessens, Joris Wesselius, Menno van Lummel, Sandra Laban, Flip Mulder, Dick Mul, Tanja Nikolić, Henk‐Jan Aanstoot, Bobby P. C. Koeleman, Bart O. Roep
Software Mentions: 6
Published: about 5 years ago

10.3390/genes12081276

Hypomethylation of AHRR (cg05575921) Is Related to Smoking Status in the Mexican Mestizo Population
Cited by: 1
Author(s): Omar Andrés Bravo-Gutiérrez, Ramcés Falfán-Valencia, Alejandra Ramírez‐Venegas, Raúl H Sansores, Rafael de Jesús Hernández-Zenteno, Andrea Hernández-Pérez, Leonor García-Gómez, Jennifer Osio-Echánove, Edgar Abarca-Rojano, Gloría Pérez-Rubio
Software Mentions: 6
Published: over 3 years ago

10.1038/s41389-019-0158-7

HSP90/AXL/eIF4E-regulated unfolded protein response as an acquired vulnerability in drug-resistant KRAS-mutant lung cancer
Cited by: 35
Author(s): Haitang Yang, Shun-Qing Liang, Duo Xu, Yang Zhang, Thomas Marti, Yanyun Gao, Gregor J. Kocher, Heng Zhao, Ralph A. Schmid, Ren‐Wang Peng
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms21228769

Physiological Changes in Barley mlo-11 Powdery Mildew Resistance Conditioned by Tandem Repeat Copy Number
Cited by: 3
Author(s): Cynthia Ge, Paula Moolhuijzen, Lee T. Hickey, Elzette Wentzel, Wei‐Wei Deng, Eric Dinglasan, Simon R. Ellwood
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0160571

To Assess the Association between Glucose Metabolism and Ectopic Lipid Content in Different Clinical Classifications of PCOS
Cited by: 12
Author(s): Christian Göbl, Johannes Ott, Latife Bozkurt, Michael Feichtinger, Victoria Rehmann, Anna Cserjan, Maike Heinisch, Helmut Steinbrecher, Ivica Just-Kukurová, Radka Tušková, Michael Leutner, E Vytiska-Binstorfer, Christine Kurz, Andrea Weghofer, Andrea Tura, Christian Egarter, Alexandra Kautzky‐Willer
Software Mentions: 6
Published: over 8 years ago

10.3390/microorganisms9040811

Bacterial Communities Associated with Poa annua Roots in Central European (Poland) and Antarctic Settings (King George Island)
Cited by: 7
Author(s): Anna Znój, Jakub Grzesiak, Jan Gawor, Robert Gromadka, Katarzyna J. Chwedorzewska
Software Mentions: 6
Published: over 3 years ago

10.3390/antiox10040595

Antioxidants-Related Superoxide Dismutase (SOD), Catalase (CAT), Glutathione Peroxidase (GPX), Glutathione-S-Transferase (GST), and Nitric Oxide Synthase (NOS) Gene Variants Analysis in an Obese Population: A Preliminary Case-Control Study
Cited by: 28
Author(s): Amani M T Gusti, Safaa Qusti, Eida M. Alshammari, Eman A. Toraih, Manal S. Fawzy
Software Mentions: 6
Published: over 3 years ago

10.1155/2020/2319194

Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
Cited by: 4
Author(s): Yantao Tian, Yiquan Ke, Yanxia Ma
Software Mentions: 6
Published: about 4 years ago

10.3389/fpls.2018.00857

Metabolite Profiles of Sugarcane Culm Reveal the Relationship Among Metabolism and Axillary Bud Outgrowth in Genetically Related Sugarcane Commercial Cultivars
Cited by: 21
Author(s): Danilo Alves Ferreira, Marina C. M. Martins, Adriana Cheavegatti-Gianotto, Monalisa Sampaio Carneiro, Rodrigo R. Amadeu, Juliana Aparecida Aricetti, L. D. Wolf, Hermann Paulo Hoffmann, Luís Guilherme F. de Abreu, Camila Caldana
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms9010127

Gut Microbiota and Short-Chain Fatty Acid Profile between Normal and Moderate Malnutrition Children in Yogyakarta, Indonesia
Cited by: 15
Author(s): Rafli Zulfa Kamil, Agnes Murdiati, Mohammad Juffrie, Jiro Nakayama, Endang Sutriswati Rahayu
Software Mentions: 6
Published: almost 4 years ago

10.3389/fpls.2019.01252

A Novel Image-Based Screening Method to Study Water-Deficit Response and Recovery of Barley Populations Using Canopy Dynamics Phenotyping and Simple Metabolite Profiling
Cited by: 15
Author(s): Cintia F. Marchetti, Lydia Ugena, Jan Humplík, Michał Polak, Sanja Ćavar Zeljković, Kateřina Podlešáková, Tomáš Fürst, Nuria De Diego, Lukáš Spíchal
Software Mentions: 6
Published: about 5 years ago

10.3389/fpls.2021.637860

Characterization of Groundnut (Arachis hypogaea L.) Test Locations Using Representative Testing Environments With Farmer-Preferred Traits
Cited by: 1
Author(s): Richard Oteng‐Frimpong, Yussif Baba Kassim, Doris K. Puozaa, Jerry Asalma Nboyine, Abdul-Rashid Issah, Masawudu Abdul Rasheed, Joseph Adjebeng‐Danquah, Francis Kusi
Software Mentions: 6
Published: over 3 years ago

10.3390/microorganisms8111754

Comparison of the Performance and Microbial Community Structure of Two Outdoor Pilot-Scale Photobioreactors Treating Digestate
Cited by: 9
Author(s): Aïda Bani, Katia Parati, Anna Pozzi, Cristina Previtali, Graziella Bongioni, Andrea Pizzera, Elena Ficara, Micol Bellucci
Software Mentions: 6
Published: about 4 years ago

10.3389/fgene.2021.638458

Expression Profile Analysis Identifies a Novel Seven Immune-Related Gene Signature to Improve Prognosis Prediction of Glioblastoma
Cited by: 5
Author(s): Li Hu, Zhibin Han, Xingbo Cheng, Sida Wang, Yumeng Feng, Zhiguo Lin
Software Mentions: 6
Published: over 3 years ago

10.1186/s40168-016-0207-9

Extending colonic mucosal microbiome analysis—assessment of colonic lavage as a proxy for endoscopic colonic biopsies
Cited by: 41
Author(s): Euan Watt, Matthew Gemmell, Susan H. Berry, Mark A. Glaire, Freda Farquharson, Petra Louis, Graeme I. Murray, Emad El-Omar, Georgina L. Hold
Software Mentions: 6
Published: almost 8 years ago

10.18632/aging.202638

Identification of key genes in coronary artery disease: an integrative approach based on weighted gene co-expression network analysis and their correlation with immune infiltration
Cited by: 10
Author(s): Yang Yang, Xiangshan Xu
Software Mentions: 6
Published: over 3 years ago

10.1186/s40168-020-00957-z

Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
Cited by: 11
Author(s): Paula B. Matheus Carnevali, Adi Lavy, Alex D. Thomas, Alexander Crits-Christoph, Spencer Diamond, Raphaël Méheust, Matthew R. Olm, Allison Sharrar, Shufei Lei, Dong Wang, Nicola Falco, Nicholas J. Bouskill, Michelle Newcomer, Peter Nico, Haruko M. Wainwright, Dipankar Dwivedi, Kenneth H. Williams, Susan S. Hubbard, Jillian F. Banfield
Software Mentions: 6
Published: over 3 years ago

10.1186/s40168-019-0734-2

Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics
Cited by: 94
Author(s): Chengying Shi, Leen Beller, Ward Deboutte, Kwe Claude Yinda, Leen Delang, Anubis Vega-Rúa, Anna‐Bella Failloux, Jelle Matthijnssens
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-017-0275-5

Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts
Cited by: 29
Author(s): Meriem Belheouane, Yask Gupta, Sven Künzel, Saleh M. Ibrahim, John F. Baines
Software Mentions: 6
Published: over 7 years ago

10.18632/aging.203166

Identification and validation of inferior prognostic genes associated with immune signatures and chemotherapy outcome in acute myeloid leukemia
Cited by: 7
Author(s): Jie Wang, Hao Jian-ping, Nazim Uddin, Yun Wu, Rong Chen, Dongfeng Li, Dai-qin Xiong, Nan Ding, Jianhua Yang, Xiaowen Ding
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0215192

Circulating Th17.1 cells as candidate for the prediction of therapeutic response to abatacept in patients with rheumatoid arthritis: An exploratory research
Cited by: 17
Author(s): Shinji Maeda, Satoshi Osaga, Tomoyo Maeda, Norihisa Takeda, Shinya Tamechika, Taio Naniwa, Akio Niimi
Software Mentions: 6
Published: about 5 years ago

10.1093/hmg/ddv449

Whole-genome bisulfite sequencing maps from multiple human tissues reveal novel CpG islands associated with tissue-specific regulation
Cited by: 42
Author(s): Isabel Mendizabal, Soojin V. Yi
Software Mentions: 6
Published: about 9 years ago

10.3389/fgene.2020.589881

The Toolbox for Fiber Flax Breeding: A Pipeline From Gene Expression to Fiber Quality
Cited by: 8
Author(s): Dmitry Galinousky, Natalia Mokshina, Tsimafei Padvitski, Marina Ageeva, Victor Bogdan, A. V. Kilchevsky, Т. А. Горшкова
Software Mentions: 6
Published: about 4 years ago

10.7150/thno.41219

ATRX/EZH2 complex epigenetically regulates FADD/PARP1 axis, contributing to TMZ resistance in glioma
Cited by: 55
Author(s): Bo Han, Xiangqi Meng, Pengfei Wu, Ziwei Li, Siyi Li, Yangong Zhang, Caijun Zha, Qile Ye, Chuanlu Jiang, Jinquan Cai, Tao Jiang
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12934-016-0456-0

Diversity of flux distribution in central carbon metabolism of S. cerevisiae strains from diverse environments
Cited by: 24
Author(s): Thibault Nidelet, Pascale Brial, Carole Camarasa, Sylvie Dequin
Software Mentions: 6
Published: over 8 years ago

10.1128/mBio.01007-20

The Ribbon-Helix-Helix Domain Protein CdrS Regulates the Tubulin Homolog <i>ftsZ2</i> To Control Cell Division in Archaea
Cited by: 15
Author(s): Cynthia L. Darnell, Jenny Z. Zheng, Sean Wilson, R Bertoli, Alexandre W. Bisson‐Filho, Edward B. Garner, Amy K. Schmid
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-94247-9

Automated scoring for a Tablet-based Rey Figure copy task differentiates constructional, organisational, and motor abilities
Cited by: 4
Author(s): Marco Alessandro Petilli, Roberta Daini, Francesca Lea Saibene, Marco Rabuffetti
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2019.00025

LncRNAs GIHCG and SPINT1-AS1 Are Crucial Factors for Pan-Cancer Cells Sensitivity to Lapatinib
Cited by: 20
Author(s): Zhen Xiang, Shuzheng Song, Zhenggang Zhu, Wenhong Sun, Jaron E. Gifts, Sam Q. Sun, Qiushi Shauna Li, Yingyan Yu, Keqin Kathy Li
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0207538

Integrating spatial indicators in the surveillance of exploited marine ecosystems
Cited by: 11
Author(s): Marta M. Rufino, Nicolas Bez, Anik Brind’Amour
Software Mentions: 6
Published: about 6 years ago

10.1186/s12864-020-6616-y

Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)
Cited by: 29
Author(s): Anthony Bernard, Annarita Marrano, Armel Donkpegan, Patrick J. Brown, Charles A. Leslie, David B. Neale, Fabrice Lheureux, Elisabeth Dirlewanger
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2020.579868

Hypoxia-Associated Prognostic Markers and Competing Endogenous RNA Co-Expression Networks in Breast Cancer
Cited by: 20
Author(s): Peng Gong, You-Cheng Shao, Shu‐Chun Huang, Yifan Zeng, Xianglin Yuan, Jingjing Xu, Weinan Yin, Lei Wei, Jingwei Zhang
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-021-90733-2

Inferring long-distance connectivity shaped by air-mass movement for improved experimental design in aerobiology
Cited by: 11
Author(s): Maria Choufany, Davide Martinetti, Samuel Soubeyrand, Cindy E. Morris
Software Mentions: 6
Published: over 3 years ago

10.1002/cam4.3576

Establishment and validation of a prognostic nomogram based on a novel five‐DNA methylation signature for survival in endometrial cancer patients
Cited by: 6
Author(s): Xingchen Li, Fufen Yin, Fan Yuan, Yuan Cheng, Yangyang Dong, Jingyi Zhou, Zhiqi Wang, Jianliu Wang
Software Mentions: 6
Published: almost 4 years ago

10.3389/fonc.2021.636479

An Immune Cell-Based Signature Associating With EMT Phenotype Predicts Postoperative Overall Survival of ESCC
Cited by: 4
Author(s): Hongliang Yu, Dayong Gu, Chao Yang, Jianhua Xu, Feng Yan, Xu He
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-86735-9

Machine learning is the key to diagnose COVID-19: a proof-of-concept study
Cited by: 17
Author(s): Cédric Gangloff, Sonia Rafi, Guillaume Bouzillé, Louis Soulat, Marc Cuggia
Software Mentions: 6
Published: over 3 years ago

10.3389/fcell.2021.640476

A Comprehensive Investigation to Reveal the Relationship Between Plasmacytoid Dendritic Cells and Breast Cancer by Multiomics Data Analysis
Cited by: 8
Author(s): Sai Tian, Yan Li, Lu Fu, Zhen Zhang, Jinbo Zhang, Guofeng Meng, Weidong Zhang
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2019.00692

Transcriptomic Analysis Identifies RNA Binding Proteins as Putative Regulators of Myelopoiesis and Leukemia
Cited by: 16
Author(s): Subha Saha, Krushna Chandra Murmu, Mayukh Biswas, Sohini Chakraborty, Jhinuk Basu, Swati Madhulika, Srinivasa Prasad Kolapalli, Santosh Chauhan, Amitava Sengupta, Punit Prasad
Software Mentions: 6
Published: over 5 years ago

10.3389/fmolb.2021.628546

Identification of Molecular Subtypes and Key Genes of Atherosclerosis Through Gene Expression Profiles
Cited by: 3
Author(s): Yujia Yang, Yuchen Cai, Yuan Zhang, Yuanfu Xu, Zhiqiang Xu
Software Mentions: 6
Published: over 3 years ago

10.3389/fninf.2018.00036

Unraveling the Complexity of Amyotrophic Lateral Sclerosis Survival Prediction
Cited by: 32
Author(s): Stephen R. Pfohl, Renaid B. Kim, Grant Coan, Cassie S. Mitchell
Software Mentions: 6
Published: over 6 years ago

10.3389/fcvm.2021.696321

Bioinformatics and Immune Infiltration Analyses Reveal the Key Pathway and Immune Cells in the Pathogenesis of Hypertrophic Cardiomyopathy
Cited by: 11
Author(s): Xuzhe Zhang, Si Zhang, Tingting Tang, Xiang Cheng
Software Mentions: 6
Published: about 3 years ago

10.3389/fcell.2021.672248

Immune Infiltrates of m6A RNA Methylation-Related lncRNAs and Identification of PD-L1 in Patients With Primary Head and Neck Squamous Cell Carcinoma
Cited by: 25
Author(s): Ziyi Feng, Haoyu Gao, Tianda Feng
Software Mentions: 6
Published: over 3 years ago

10.3390/cancers13092248

Claudin-Low Breast Cancer Inflammatory Signatures Support Polarization of M1-Like Macrophages with Protumoral Activity
Cited by: 7
Author(s): Mayra C. Suárez-Arriaga, Alfonso Méndez‐Tenorio, Vadim Pérez‐Koldenkova, Ezequiel M. Fuentes‐Pananá
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-020-63389-7

Metabotropic glutamate receptor 5 in bulimia nervosa
Cited by: 11
Author(s): Yoan Mihov, Valérie Treyer, Funda Akkus, Erika Toman, Gabriella Milos, Simon M. Ametamey, Anass Johayem, Gregor Hasler
Software Mentions: 6
Published: over 4 years ago

10.3390/cancers12020274

Cancer Stem Cell Marker DCLK1 Correlates with Tumorigenic Immune Infiltrates in the Colon and Gastric Adenocarcinoma Microenvironments
Cited by: 50
Author(s): Xiangyan Wu, Dongfeng Qu, Nathaniel Weygant, Jun Peng, Courtney W. Houchen
Software Mentions: 6
Published: almost 5 years ago

10.3390/foods10081936

Sensory and Physical Characteristics of M. biceps femoris from Older Cows Using Ginger Powder (Zingibain) and Sous Vide Cooking
Cited by: 8
Author(s): Zahra Naqvi, Peter Thomson, Michael A. Campbell, Sajid Latif, J. F. Legako, David McGill, Peter Wynn, Michael Friend, R. D. Warner
Software Mentions: 6
Published: over 3 years ago

10.3389/fmolb.2020.00148

Friend or Foe: Prognostic and Immunotherapy Roles of BTLA in Colorectal Cancer
Cited by: 23
Author(s): Jingjing Song, Lihui Wu
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-018-30509-3

Drug-based perturbation screen uncovers synergistic drug combinations in Burkitt lymphoma
Cited by: 20
Author(s): Katarzyna Tomska, Roman Kurilov, Kwang Seok Lee, Jennifer Hüllein, Marina Lukas, Leopold Sellner, Tatjana Walther, Lena Wagner, Małgorzata Oleś, Benedikt Brors, Wolfgang Huber, Thorsten Zenz
Software Mentions: 6
Published: over 6 years ago

10.34133/2020/1925495

Soybean Root System Architecture Trait Study through Genotypic, Phenotypic, and Shape-Based Clusters
Cited by: 30
Author(s): Kevin G. Falk, Talukder Z. Jubery, Jamie A. O’Rourke, Arti Singh, Soumik Sarkar, Baskar Ganapathysubramanian
Software Mentions: 6
Published: almost 5 years ago

10.1002/pld3.41

High‐fidelity detection of crop biomass quantitative trait loci from low‐cost imaging in the field
Cited by: 11
Author(s): Darshi Banan, Rachel Paul, Max Feldman, Mark W. Holmes, Hannah Schlake, Ivan Baxter, Hui Jiang, Andrew D. B. Leakey
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmolb.2021.644620

Pan-Cancer Prognostic, Immunity, Stemness, and Anticancer Drug Sensitivity Characterization of N6-Methyladenosine RNA Modification Regulators in Human Cancers
Cited by: 24
Author(s): Rui Li, Yunhong Yin, Xiu-Li Ji, Xiao Liu, Jianping Li, Yi-Qing Qu
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-018-31866-9

Child Weight Gain Trajectories Linked To Oral Microbiota Composition
Cited by: 38
Author(s): Sarah Jane Craig, Daniel Blankenberg, Alice Parodi, Ian M. Paul, Leann L. Birch, Jennifer S. Savage, Michele Marini, Jennifer L. Stokes, Anton Nekrutenko, Matthew Reimherr, Francesca Chiaromonte, Kateryna D. Makova
Software Mentions: 6
Published: about 6 years ago

10.7717/peerj.7141

Comparison of soil bacterial community and functional characteristics following afforestation in the semi-arid areas
Cited by: 27
Author(s): Jiaojiao Deng, Yan Zhang, You Yin, Xu Zhu, Wenxu Zhu, Yongbin Zhou
Software Mentions: 6
Published: over 5 years ago

10.3390/cancers11122023

Identification of a Subtype of Hepatocellular Carcinoma with Poor Prognosis Based on Expression of Genes within the Glucose Metabolic Pathway
Cited by: 11
Author(s): Xiaoli Zhang, Jin Li, Kalpana Ghoshal, Soledad Fernández, Lang Li
Software Mentions: 6
Published: almost 5 years ago

Projects: cran: corrplot

Papers Mentioning corrplot 1,077