Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: apcluster
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/apcluster
Affinity Propagation Clustering
25 versions
Latest release: about 1 year ago
14 dependent packages
3,838 downloads last month
Papers Mentioning apcluster 20
10.3389/fmicb.2019.02597
New Insights Into Cinnamoyl Esterase Activity of Oenococcus oeniCited by: 9
Author(s): Ingrid Collombel, Chrats Melkonian, Douwe Molenaar, Francisco M. Campos, Tim Hogg
Software Mentions: 12
Published: almost 5 years ago
10.3389/fmicb.2019.00697
Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling MustCited by: 28
Author(s): Kimmo Sirén, Sarah S.T. Mak, Chrats Melkonian, Christian Carøe, Jan H. Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert
Software Mentions: 12
Published: over 5 years ago
10.1038/s42003-021-01948-y
High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumersCited by: 9
Author(s): Chrats Melkonian, Lucas Fillinger, Siavash Atashgahi, Ulisses Nunes da Rocha, Eric Kuiper, Brett G. Olivier, Martin Braster, Willi Gottstein, Rick Helmus, John R. Parsons, Hauke Smidt, Marcelle van der Waals, Jan Gerritse, Bernd W. Brandt, Wilfred F. M. Röling, Douwe Molenaar, Rob J.M. van Spanning
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pbio.3001390
Identifying and prioritizing potential human-infecting viruses from their genome sequencesCited by: 43
Author(s): Nardus Mollentze, Simon A. Babayan, Daniel G. Streicker
Software Mentions: 7
Published: about 3 years ago
10.1186/s13029-019-0072-6
IPCAPS: an R package for iterative pruning to capture population structureCited by: 11
Author(s): Kridsadakorn Chaichoompu, Fentaw Abegaz, Sissades Tongsima, Philip Shaw, Anavaj Sakuntabhai, Luı́sa Pereira, Kristel Van Steen
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pntd.0008018
Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensisCited by: 5
Author(s): Anne Busch, Timo Homeier‐Bachmann, Mostafa Y. Abdel-Glil, Anja Hackbart, Helmut Hotzel, Herbert Tomaso
Software Mentions: 6
Published: about 4 years ago
10.3390/biomedicines8110455
An Exploratory Pilot Study with Plasma Protein Signatures Associated with Response of Patients with Depression to Antidepressant Treatment for 10 WeeksCited by: 9
Author(s): Eun Young Kim, Hee‐Sung Ahn, Min Young Lee, Jeesuk Yu, Jeonghun Yeom, Hee Jong Jeong, Hophil Min, Hyun Jeong Lee, Kyunggon Kim, Yong Min Ahn
Software Mentions: 6
Published: about 4 years ago
10.3390/ijms20236098
RankerGUI: A Computational Framework to Compare Differential Gene Expression Profiles Using Rank Based StatisticsCited by: 5
Author(s): Amarinder Singh Thind, Kumar Parijat Tripathi, Mario Rosario Guarracino
Software Mentions: 5
Published: almost 5 years ago
10.7717/peerj.3452
Discrimination ofPicea chihuahuanaMartinez populations on the basis of climatic, edaphic, dendrometric, genetic and population traitsCited by: 6
Author(s): Iliana Karina Dominguez-Guerrero, Samantha del Rocío Mariscal-Lucero, José Ciro Hernández-Díaz, Berthold Heinze, José Ángel Prieto-Ruíz, Christian Wehenkel
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pgen.1007357
Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium melilotiCited by: 48
Author(s): George C. diCenzo, Alex B. Benedict, Marco Fondi, Graham C. Walker, Turlough M. Finan, Alessio Mengoni, Joel S. Griffitts
Software Mentions: 4
Published: over 6 years ago
10.3389/fmicb.2016.00783
Capturing One of the Human Gut Microbiome’s Most Wanted: Reconstructing the Genome of a Novel Butyrate-Producing, Clostridial Scavenger from Metagenomic Sequence DataCited by: 23
Author(s): Patricio Jeraldo, Alvaro G. Hernandez, Henrik Bjørn Nielsen, Xianfeng Chen, Bryan A. White, Nigel Goldenfeld, Heidi Nelson, David Alhquist, Lisa A. Boardman, Nicholas Chia
Software Mentions: 3
Published: over 8 years ago
10.1038/srep24175
Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genesCited by: 181
Author(s): Hsin-Hung Lin, Yu-Chieh Liao
Software Mentions: 3
Published: over 8 years ago
10.1093/molbev/msaa085
The Origin of Additive Genetic Variance Driven by Positive SelectionCited by: 3
Author(s): Li Liu, Yayu Wang, Di Zhang, Zhuoxin Chen, Xiaoshu Chen, Zhijian Su, Xionglei He
Software Mentions: 2
Published: over 4 years ago
10.1038/s41597-021-00944-5
High content genome-wide siRNA screen to investigate the coordination of cell size and RNA productionCited by: 8
Author(s): Mattia Müller, Lucas Pelkmans, Scott Berry
Software Mentions: 2
Published: over 3 years ago
10.3390/s16071044
Node Detection and Internode Length Estimation of Tomato Seedlings Based on Image Analysis and Machine LearningCited by: 23
Author(s): Kyosuke Yamamoto, Wei Guo, S. Ninomiya
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pcbi.1003504
Quantitative Protein Localization Signatures Reveal an Association between Spatial and Functional Divergences of ProteinsCited by: 24
Author(s): Lit‐Hsin Loo, Danai Laksameethanasan, Yi-Ling Tung
Software Mentions: 1
Published: over 10 years ago
10.3390/plants9030309
Emergence Patterns of Rare Arable Plants and Conservation ImplicationsCited by: 0
Author(s): Joel Torra, Frank Forcella, Jordi Recasens Guinjuan, Aritz Royo‐Esnal
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pntd.0006182
Defining objective clusters for rabies virus sequences using affinity propagation clusteringCited by: 17
Author(s): Susanne Fischer, Conrad M. Freuling, Thomas Müller, Florian Pfaff, Ulrich Bodenhofer, Dirk W. Höper, Mareike Fischer, Denise A. Marston, Anthony R. Fooks, Thomas C. Mettenleiter, Franz Josef Conraths, Timo Homeier‐Bachmann
Software Mentions: 1
Published: almost 7 years ago
10.15252/msb.20156308
A genome‐scale screen reveals context‐dependent ovarian cancer sensitivity to mi <scp>RNA</scp> overexpressionCited by: 9
Author(s): Benjamin B. Shields, Chad V. Pecot, Hua Gao, Elizabeth A. McMillan, Malia B. Potts, Christa Nagel, Scott C. Purinton, Ying Wang, Cristina Ivan, Hyun‐Seok Kim, Robert Borkowski, Shaheen Khan, Cristian Rodríguez-Aguayo, Gabriel López-Berestein, Jayanthi Lea, Adi F. Gazdar, Keith A. Baggerly, Anil K. Sood, Michael A. White
Software Mentions: 1
Published: almost 9 years ago