Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: apcluster

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/apcluster

Affinity Propagation Clustering
25 versions
Latest release: 12 months ago
14 dependent packages
3,838 downloads last month

Papers Mentioning apcluster 20

10.3389/fmicb.2019.02597

New Insights Into Cinnamoyl Esterase Activity of Oenococcus oeni
Cited by: 9
Author(s): Ingrid Collombel, Chrats Melkonian, Douwe Molenaar, Francisco M. Campos, Tim Hogg
Software Mentions: 12
Published: almost 5 years ago

10.3389/fmicb.2019.00697

Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must
Cited by: 28
Author(s): Kimmo Sirén, Sarah S.T. Mak, Chrats Melkonian, Christian Carøe, Jan H. Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert
Software Mentions: 12
Published: over 5 years ago

10.1038/s42003-021-01948-y

High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers
Cited by: 9
Author(s): Chrats Melkonian, Lucas Fillinger, Siavash Atashgahi, Ulisses Nunes da Rocha, Eric Kuiper, Brett G. Olivier, Martin Braster, Willi Gottstein, Rick Helmus, John R. Parsons, Hauke Smidt, Marcelle van der Waals, Jan Gerritse, Bernd W. Brandt, Wilfred F. M. Röling, Douwe Molenaar, Rob J.M. van Spanning
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pbio.3001390

Identifying and prioritizing potential human-infecting viruses from their genome sequences
Cited by: 43
Author(s): Nardus Mollentze, Simon A. Babayan, Daniel G. Streicker
Software Mentions: 7
Published: almost 3 years ago

10.1186/s13029-019-0072-6

IPCAPS: an R package for iterative pruning to capture population structure
Cited by: 11
Author(s): Kridsadakorn Chaichoompu, Fentaw Abegaz, Sissades Tongsima, Philip Shaw, Anavaj Sakuntabhai, Luı́sa Pereira, Kristel Van Steen
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pntd.0008018

Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis
Cited by: 5
Author(s): Anne Busch, Timo Homeier‐Bachmann, Mostafa Y. Abdel-Glil, Anja Hackbart, Helmut Hotzel, Herbert Tomaso
Software Mentions: 6
Published: almost 4 years ago

10.3390/biomedicines8110455

An Exploratory Pilot Study with Plasma Protein Signatures Associated with Response of Patients with Depression to Antidepressant Treatment for 10 Weeks
Cited by: 9
Author(s): Eun Young Kim, Hee‐Sung Ahn, Min Young Lee, Jeesuk Yu, Jeonghun Yeom, Hee Jong Jeong, Hophil Min, Hyun Jeong Lee, Kyunggon Kim, Yong Min Ahn
Software Mentions: 6
Published: almost 4 years ago

10.3390/ijms20236098

RankerGUI: A Computational Framework to Compare Differential Gene Expression Profiles Using Rank Based Statistics
Cited by: 5
Author(s): Amarinder Singh Thind, Kumar Parijat Tripathi, Mario Rosario Guarracino
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.3452

Discrimination ofPicea chihuahuanaMartinez populations on the basis of climatic, edaphic, dendrometric, genetic and population traits
Cited by: 6
Author(s): Iliana Karina Dominguez-Guerrero, Samantha del Rocío Mariscal-Lucero, José Ciro Hernández-Díaz, Berthold Heinze, José Ángel Prieto-Ruíz, Christian Wehenkel
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pgen.1007357

Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti
Cited by: 48
Author(s): George C. diCenzo, Alex B. Benedict, Marco Fondi, Graham C. Walker, Turlough M. Finan, Alessio Mengoni, Joel S. Griffitts
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2016.00783

Capturing One of the Human Gut Microbiome’s Most Wanted: Reconstructing the Genome of a Novel Butyrate-Producing, Clostridial Scavenger from Metagenomic Sequence Data
Cited by: 23
Author(s): Patricio Jeraldo, Alvaro G. Hernandez, Henrik Bjørn Nielsen, Xianfeng Chen, Bryan A. White, Nigel Goldenfeld, Heidi Nelson, David Alhquist, Lisa A. Boardman, Nicholas Chia
Software Mentions: 3
Published: over 8 years ago

10.1038/srep24175

Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes
Cited by: 181
Author(s): Hsin-Hung Lin, Yu-Chieh Liao
Software Mentions: 3
Published: over 8 years ago

10.1093/molbev/msaa085

The Origin of Additive Genetic Variance Driven by Positive Selection
Cited by: 3
Author(s): Li Liu, Yayu Wang, Di Zhang, Zhuoxin Chen, Xiaoshu Chen, Zhijian Su, Xionglei He
Software Mentions: 2
Published: over 4 years ago

10.1038/s41597-021-00944-5

High content genome-wide siRNA screen to investigate the coordination of cell size and RNA production
Cited by: 8
Author(s): Mattia Müller, Lucas Pelkmans, Scott Berry
Software Mentions: 2
Published: about 3 years ago

10.3390/s16071044

Node Detection and Internode Length Estimation of Tomato Seedlings Based on Image Analysis and Machine Learning
Cited by: 23
Author(s): Kyosuke Yamamoto, Wei Guo, S. Ninomiya
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pcbi.1003504

Quantitative Protein Localization Signatures Reveal an Association between Spatial and Functional Divergences of Proteins
Cited by: 24
Author(s): Lit‐Hsin Loo, Danai Laksameethanasan, Yi-Ling Tung
Software Mentions: 1
Published: over 10 years ago

10.3390/plants9030309

Emergence Patterns of Rare Arable Plants and Conservation Implications
Cited by: 0
Author(s): Joel Torra, Frank Forcella, Jordi Recasens Guinjuan, Aritz Royo‐Esnal
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pntd.0006182

Defining objective clusters for rabies virus sequences using affinity propagation clustering
Cited by: 17
Author(s): Susanne Fischer, Conrad M. Freuling, Thomas Müller, Florian Pfaff, Ulrich Bodenhofer, Dirk W. Höper, Mareike Fischer, Denise A. Marston, Anthony R. Fooks, Thomas C. Mettenleiter, Franz Josef Conraths, Timo Homeier‐Bachmann
Software Mentions: 1
Published: over 6 years ago

10.15252/msb.20156308

A genome‐scale screen reveals context‐dependent ovarian cancer sensitivity to mi <scp>RNA</scp> overexpression
Cited by: 9
Author(s): Benjamin B. Shields, Chad V. Pecot, Hua Gao, Elizabeth A. McMillan, Malia B. Potts, Christa Nagel, Scott C. Purinton, Ying Wang, Cristina Ivan, Hyun‐Seok Kim, Robert Borkowski, Shaheen Khan, Cristian Rodríguez-Aguayo, Gabriel López-Berestein, Jayanthi Lea, Adi F. Gazdar, Keith A. Baggerly, Anil K. Sood, Michael A. White
Software Mentions: 1
Published: almost 9 years ago