Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pntd.0008018

https://doi.org/10.1371/journal.pntd.0008018

Cited by: 5
Author(s): Anne Busch, Timo Homeier‐Bachmann, Mostafa Y. Abdel-Glil, Anja Hackbart, Helmut Hotzel, Herbert Tomaso
Published: over 3 years ago

Software Mentions 6

cran: apcluster
Affinity Propagation Clustering
Papers that mentioned: 20
cran: kmer
Fast K-Mer Counting and Clustering for Biological Sequence Analysis
Papers that mentioned: 240
pypi: 0
0
Papers that mentioned: 1,265
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
pypi: pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Papers that mentioned: 120
pypi: silhouette

Papers that mentioned: 1