Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ade4

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
47 versions
Latest release: almost 2 years ago
93 dependent packages
41,735 downloads last month

Papers Mentioning ade4 809

10.3389/fmicb.2021.682721
A Metagenome-Wide Association Study of the Gut Microbiome and Metabolic Syndrome
Cited by: 19
Author(s): Qian Qin, Yan Su, Yang Yang, Jingfeng Chen, Tiantian Li, Xinxin Gao, Hang Yan, Youxiang Wang, Jiao Wang, Shoujun Wang, Shuzhe Ding
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2017.00484
Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China
Cited by: 21
Author(s): Jing Li, Qiangchuan Hou, Jiachao Zhang, Haiyan Xu, Zhihong Sun, Bilige Menghe, Heping Zhang
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2018.01920
Bacterial Diversity in Chinese Rushan Cheese From Different Geographical Origins
Cited by: 15
Author(s): Jinai Xue, Yi Yang, Zhaoxia Wang, Yurong Guo, Yiming Shao
Software Mentions: 2
Published: over 6 years ago
10.3389/fphys.2018.01506
Cold Acclimation Favors Metabolic Stability in Drosophila suzukii
Cited by: 26
Author(s): Thomas Enriquez, David Renault, Maryvonne Charrier, Hervé Colinet
Software Mentions: 2
Published: about 6 years ago
10.3389/fpls.2016.00649
Inter-Species Comparative Analysis of Components of Soluble Sugar Concentration in Fleshy Fruits
Cited by: 35
Author(s): Zhanwu Dai, Huan Wu, Valentina Baldazzi, Cornelis van Leeuwen, Nadia Bertin, Hélène Gautier, Benhong Wu, Éric Duchêne, Éric Gomès, Serge Delrot, Françoise Lescourret, Michel Génard
Software Mentions: 2
Published: over 8 years ago
10.3389/fpls.2018.00967
A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale
Cited by: 52
Author(s): Léa Frachon, Claudia Bartoli, Sébastien Carrère, Olivier Bouchez, Adeline Chaubet, Mathieu Gautier, Dominique Roby, Fabrice Roux
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2148-12-65
A genome-wide study of recombination rate variation in Bartonella henselae
Cited by: 18
Author(s): Lionel Guy, Björn Nystedt, Yu Sun, Kristina Näslund, Eva Berglund, Siv G. E. Andersson
Software Mentions: 2
Published: over 12 years ago
10.3389/fpls.2020.604389
Chemical Basis of Floral Color Signals in Gesneriaceae: The Effect of Alternative Anthocyanin Pathways
Cited by: 7
Author(s): Ezgi Ogutcen, Karine Durand, Marina Wolowski, Laura Clavijo, Catherine H. Graham, Gaëtan Glauser, Mathieu Perret
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpls.2019.01785
Low Amplitude Boom-and-Bust Cycles Define the Septoria Nodorum Blotch Interaction
Cited by: 13
Author(s): H. Phan, Darcy A. B. Jones, Kasia Rybak, Kejal N Dodhia, Francisco J. López-Ruiz, Romain Valade, Lilian Gout, Marc‐Henri Lebrun, Patrick C. Brunner, Richard P. Oliver, Kar‐Chun Tan
Software Mentions: 2
Published: almost 5 years ago
10.3389/fpls.2017.00818
New Genetic Insights into Pearl Millet Diversity As Revealed by Characterization of Early- and Late-Flowering Landraces from Senegal
Cited by: 18
Author(s): Oumar Diack, Ndjido Ardo Kane, Cécile Berthouly‐Salazar, Mame Codou Guèye, B Diop, Amadou Fofana, Ousmane Sy, Hamidou Tall, Leïla Zekraoui, Marie Piquet, Marie Couderc, Yves Vigouroux, Diaga Diouf, Adéline Barnaud
Software Mentions: 2
Published: over 7 years ago
10.3389/fnsys.2012.00071
Keeping their distance? Odor response patterns along the concentration range
Cited by: 18
Author(s): Martin Strauch, Mathias Ditzen, C. Giovanni Galizia
Software Mentions: 2
Published: almost 13 years ago
10.1186/1479-5876-10-174
Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury
Cited by: 351
Author(s): Derrick E. Fouts, Rembert Pieper, Sebastian Szpakowski, Hans G. Pohl, Susan M. Knoblach, Moo-Jin Suh, Shih‐Ting Huang, Inger Ljungberg, Bruce M. Sprague, Lucas Sk, Manolito Torralba, Karen E. Nelson, Suzanne L. Groah
Software Mentions: 2
Published: about 12 years ago
10.1186/s12263-017-0573-3
Lactase persistence in Tunisia as a result of admixture with other Mediterranean populations
Cited by: 10
Author(s): Yosra Ben Halima, Rym Kéfi, Marco Sazzini, Cristina Giuliani, Sara De Fanti, Chokri Nouali, Majdi Nagara, Giacomo Mengozzi, Sahar Elouej, A. Abid, H. Jamoussi, Lotfi Chouchane, Giovanni Romeo, Sonia Abdelhak, Donata Luiselli
Software Mentions: 2
Published: about 7 years ago
10.1186/s12862-017-1116-7
Patterns of genetic variation among geographic and host-plant associated populations of the peach fruit moth Carposina sasakii (Lepidoptera: Carposinidae)
Cited by: 13
Author(s): You-Zhu Wang, Bingyan Li, Ary A. Hoffmann, Li‐Jun Cao, Ya‐Jun Gong, Wei Song, Jia‐Ying Zhu, Shugang Wei
Software Mentions: 2
Published: almost 7 years ago
10.1093/gbe/evv220
Comparative Genomics of the Genus<i>Porphyromonas</i>Identifies Adaptations for Heme Synthesis within the Prevalent Canine Oral Species<i>Porphyromonas cangingivalis</i>
Cited by: 21
Author(s): Ciaran O’Flynn, Oliver Deusch, Aaron E. Darling, Jonathan A. Eisen, Corrin Wallis, Ian J. Davis, Stephen Harris
Software Mentions: 2
Published: about 9 years ago
10.1007/s11357-019-00114-x
Tryptophan metabolism is differently regulated between large and small dogs
Cited by: 9
Author(s): Jessica M. Hoffman, J. Veronika Kiklevich, Marika Austad, ViLinh Tran, Dean P. Jones, Angela B. Royal, Carolyn J. Henry, Steven N. Austad
Software Mentions: 2
Published: almost 5 years ago
10.1007/s00442-015-3345-z
Spatially structured environmental filtering of collembolan traits in late successional salt marsh vegetation
Cited by: 56
Author(s): Lina Ahlbäck Widenfalk, Jan Bengtsson, Åsa Berggren, Krista Zwiggelaar, Evelien Spijkman, F Huyer-Brugman, M.P. Berg
Software Mentions: 2
Published: over 9 years ago
10.1177/0959683618798116
Genetic evidence for a western Chinese origin of broomcorn millet (<i>Panicum miliaceum</i>)
Cited by: 18
Author(s): Harriet V. Hunt, Anna Rudzinski, Hongen Jiang, Ruiyun Wang, Mark G. Thomas, Martin K. Jones
Software Mentions: 2
Published: about 6 years ago
10.1007/s00442-020-04778-7
Contrasting responses of above- and below-ground herbivore communities along elevation
Cited by: 4
Author(s): Camille Pitteloud, Patrice Descombes, Sara Sánchez‐Moreno, Alan Kergunteuil, Sébastien Ibanez, Sergio Rasmann, Loïc Pellissier
Software Mentions: 2
Published: about 4 years ago
10.3390/insects11020089
Wing Geometric Morphometrics of Workers and Drones and Single Nucleotide Polymorphisms Provide Similar Genetic Structure in the Iberian Honey Bee (Apis mellifera iberiensis)
Cited by: 22
Author(s): Dora Henriques, Júlio Chávez-Galarza, Juliana Stephanie Galaschi Teixeira, Helena Lage Ferreira, Cátia J. Neves, Tiago Maurício Francoy, M. Alice Pinto
Software Mentions: 2
Published: almost 5 years ago
10.1007/s00442-020-04806-6
Effects of environmental heterogeneity on phenotypic variation of the endemic plant Lilium pomponium in the Maritime and Ligurian Alps
Cited by: 7
Author(s): Carmelo Macrì, Davide Dagnino, Maria Guerrina, Frédéric Mèdail, Luigi Minuto, John D. Thompson, Gabriele Casazza
Software Mentions: 2
Published: almost 4 years ago
10.1186/1471-2148-8-336
The fate of the duplicated androgen receptor in fishes: a late neofunctionalization event?
Cited by: 77
Author(s): Véronique Douard, Frédéric Brunet, Bastien Boussau, Isabelle Ahrens-Fath, Virginie Vlaeminck-Guillem, Bernard Haendler, Vincent Laudet, Yann Guiguen
Software Mentions: 2
Published: almost 16 years ago
10.1186/s12862-015-0411-4
Positive selection in octopus haemocyanin indicates functional links to temperature adaptation
Cited by: 6
Author(s): Michael Oellermann, Jan M. Strugnell, Bernhard Lieb, Felix Christopher Mark
Software Mentions: 2
Published: over 9 years ago
10.3390/proteomes4030021
Understanding the Remodelling of Cell Walls during Brachypodium distachyon Grain Development through a Sub-Cellular Quantitative Proteomic Approach
Cited by: 15
Author(s): Mathilde Francin-Allami, Virginie Lollier, Marija Pavlović, Hélène San Clemente, Hélène Rogniaux, Élisabeth Jamet, Fabienne Guillon, Colette Larré
Software Mentions: 2
Published: over 8 years ago
10.1186/s12862-015-0342-0
Selection on MHC class II supertypes in the New Zealand endemic Hochstetter’s frog
Cited by: 28
Author(s): Mette Lillie, Catherine E. Grueber, Jolene T. Sutton, Robyn Howitt, Phillip J. Bishop, Dianne Gleeson, Katherine Belov
Software Mentions: 2
Published: over 9 years ago
10.3390/ijms18030560
Changes in Brain Monoamines Underlie Behavioural Disruptions after Zebrafish Diet Exposure to Polycyclic Aromatic Hydrocarbons Environmental Mixtures
Cited by: 19
Author(s): Caroline Vignet, Verena M. Trenkel, Annick Vouillarmet, Giampiero Bricca, Marie‐Laure Bégout, Xavier Cousin
Software Mentions: 2
Published: over 7 years ago
10.1186/s12931-020-01414-z
Transcriptomic profiling reveals disease-specific characteristics of epithelial cells in idiopathic pulmonary fibrosis
Cited by: 8
Author(s): Maximilian Boesch, Florent Baty, Martin Brutsche, Michael Tamm, Julien Roux, Lars Knudsen, Amiq Gazdhar, Thomas Geiser, Petra Khan, Katrin Hostettler
Software Mentions: 2
Published: over 4 years ago
10.1186/s12862-021-01781-1
Evidence of past forest fragmentation in the Congo Basin from the phylogeography of a shade-tolerant tree with limited seed dispersal: Scorodophloeus zenkeri (Fabaceae, Detarioideae)
Cited by: 3
Author(s): Samuel Vanden Abeele, Steven Janssens, Rosalía Piñeiro, Olivier J. Hardy
Software Mentions: 2
Published: over 3 years ago
10.3390/ijms21010239
Cell Wall Proteome of Wheat Grain Endosperm and Outer Layers at Two Key Stages of Early Development
Cited by: 9
Author(s): Mehdi Cherkaoui, Virginie Lollier, Audrey Geairon, Axelle Bouder, Colette Larré, Hélène Rogniaux, Élisabeth Jamet, Fabienne Guillon, Mathilde Francin-Allami
Software Mentions: 2
Published: almost 5 years ago
10.1038/srep32524
Metagenomic approach reveals microbial diversity and predictive microbial metabolic pathways in Yucha, a traditional Li fermented food
Cited by: 61
Author(s): Jiachao Zhang, Xiaoru Wang, Dongxue Huo, Wu Li, Qisong Hu, Chang Xu, Sixin Liu, Congfa Li
Software Mentions: 2
Published: about 8 years ago
10.1038/srep35420
Functional diversity exhibits a diverse relationship with area, even a decreasing one
Cited by: 47
Author(s): Elpida Karadimou, Athanasios S. Kallimanis, Ioannis Tsiripidis, Panayotis Dimopoulos
Software Mentions: 2
Published: about 8 years ago
10.1038/srep42634
Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank
Cited by: 42
Author(s): Márcio Fernandes Alves Leite, Yao Pan, J. Bloem, Hein ten Berge, Eiko E. Kuramae
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep43199
Commensal gut bacteria modulate phosphorylation-dependent PPARγ transcriptional activity in human intestinal epithelial cells
Cited by: 59
Author(s): Małgorzata Nepelska, Tomás de Wouters, Elsa Jacouton, Fabienne Béguet-Crespel, Nicolas Lapaque, Joël Doré, Velmurugesan Arulampalam, Hervé M. Blottière
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-07091-1
Administration of Lactobacillus salivarius LI01 or Pediococcus pentosaceus LI05 prevents CCl4-induced liver cirrhosis by protecting the intestinal barrier in rats
Cited by: 63
Author(s): Ding Shi, Longxian Lv, Daiqiong Fang, Wenshuai Wu, Chenxia Hu, Lichen Xu, Yanfei Chen, Jing Guo, Xinjun Hu, Ang Li, Feifei Guo, Jianzhong Ye, Yating Li, Dewi Andayani, Lanjuan Li
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-07929-8
Field-based assessment of the mechanism of maize yield enhancement by Azospirillum lipoferum CRT1
Cited by: 30
Author(s): Camille Rozier, Jihane Hamzaoui, Damien Lemoine, Sonia Czarnes, Laurent Legendre
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-08380-5
Nosema ceranae, Fipronil and their combination compromise honey bee reproduction via changes in male physiology
Cited by: 33
Author(s): Guillaume Kairo, David G. Biron, Faten Ben Abdelkader, Marc Bonnet, Sylvie Tchamitchian, Marianne Cousin, Claudia Dussaubat, Boris Benoit, André Kretzschmar, Luc Belzunces, Jean-Luc Brunet
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-12942-y
An extinct vertebrate preserved by its living hybridogenetic descendant
Cited by: 11
Author(s): Sylvain Dubey, Christophe Dufresnes
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-13535-5
Stabilization of a bat-pitcher plant mutualism
Cited by: 1
Author(s): Michael G. Schöner, Caroline R. Schöner, Rebecca Ermisch, Sébastien J. Puechmaille, T. Ulmar Grafe, Moi Chan Tan, Gerald Kerth
Software Mentions: 2
Published: about 7 years ago
10.1186/s12898-017-0153-9
Diversity of root-knot nematodes in Moroccan olive nurseries and orchards: does Meloidogyne javanica disperse according to invasion processes?
Cited by: 6
Author(s): Mohamed Aït Hamza, Nawal Ali, Johannes Tavoillot, Odile Fossati‐Gaschignard, H. Boubaker, Abdelhamid El Mousadik, Thierry Mateille
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12898-016-0094-8
Host plant range of a fruit fly community (Diptera: Tephritidae): does fruit composition influence larval performance?
Cited by: 43
Author(s): Abir Hafsi, Benoît Facon, Virginie Ravigné, Frédéric Chiroleu, Serge Quilici, Brahim Chermiti, Pierre François Duyck
Software Mentions: 2
Published: about 8 years ago
10.1038/s41598-019-41213-1
Eco-physiological responses of copepods and pteropods to ocean warming and acidification
Cited by: 14
Author(s): Jonna Engström‐Öst, Olivier Glippa, Richard A. Feely, Mirella Kanerva, Julie E. Keister, Simone R. Alin, B.R. Carter, Anna K. McLaskey, Kristiina Vuori, Nina Bednaršek
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-41945-0
Ancient human mitochondrial genomes from Bronze Age Bulgaria: new insights into the genetic history of Thracians
Cited by: 5
Author(s): Alessandra Modi, Desislava Nesheva, Stefania Sarno, Stefania Vai, Sena Karachanak-Yankova, Donata Luiselli, Elena Pilli, Martina Lari, Chiara Vergata, Yordan Yordanov, Dessislava Dimitrova, Petar Kalcev, Rada Staneva, Olga Antonova, Savina Hadjidekova, Angel S. Galabov, Драга Тончева, David Caramelli
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-47894-y
First levantine fossil murines shed new light on the earliest intercontinental dispersal of mice
Cited by: 13
Author(s): Raquel López‐Antoñanzas, Sabrina Renaud, Pablo Peláez‐Campomanes, Dany Azar, George Kachacha, Fabien Knoll
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-49290-y
Temporal variation of eukaryotic community structures in UASB reactor treating domestic sewage as revealed by 18S rRNA gene sequencing
Cited by: 23
Author(s): Yuga Hirakata, Masashi Hatamoto, Mamoru Oshiki, Takahiro Watari, Kyohei Kuroda, Nobuo Araki, Takashi Yamaguchi
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-53998-2
Marine fish traits follow fast-slow continuum across oceans
Cited by: 26
Author(s): Esther Beukhof, Romain Frelat, Laurène Pécuchet, Aurore Maureaud, Tim Spaanheden Dencker, Jón Sólmundsson, Antonio Punzón, Raul Primicerio, Manuel Hidalgo, Christian Möllmann, Martin Lindegren
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-019-56690-7
Characterization of Holstein and Normande whole milk miRNomes highlights breed specificities
Cited by: 16
Author(s): Sandrine Le Guillou, Arlette Leduc, Johann Laubier, Sarah Barbey, Marie Rossignol, Rachel Lefebvre, Sylvain Marthey, Dénis Laloë, Fabienne Le Provost
Software Mentions: 2
Published: almost 5 years ago
10.1186/1471-2105-7-422
Analysis with respect to instrumental variables for the exploration of microarray data structures
Cited by: 46
Author(s): Florent Baty, Michaël Facompré, Jan Wiegand, Joseph Schwager, Martin Brutsche
Software Mentions: 2
Published: about 18 years ago
10.1080/20002297.2019.1609838
Development of an <i>in vitro</i> system to study oral biofilms in real time through impedance technology: validation and potential applications
Cited by: 23
Author(s): Álex Mira, Elena Buetas, Bob T. Rosier, Danuta Mazurel, Álvaro Villanueva-Castellote, Carmen Llena, Milagros Ferrer
Software Mentions: 2
Published: almost 6 years ago
10.3390/v13061132
Spatial and Temporal Dynamics and Molecular Evolution of Tula orthohantavirus in German Vole Populations
Cited by: 6
Author(s): Sabrina Schmidt, Daniela Reil, Kathrin Jeske, Stephan Drewes, Ulrike Rosenfeld, Stefan Fischer, Nastasja G Spierling, Anton Labutin, Gerald Heckel, Jens Jacob, Rainer G. Ulrich, Christian Imholt
Software Mentions: 2
Published: over 3 years ago
10.1186/s13071-014-0510-x
Attachment site selection of life stages of Ixodes ricinus ticks on a main large host in Europe, the red deer (Cervus elaphus)
Cited by: 18
Author(s): Atle Mysterud, Idar Lauge Hatlegjerde, Ole Jakob Sørensen
Software Mentions: 2
Published: about 10 years ago
10.7717/peerj.3364
Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition
Cited by: 35
Author(s): Stéphane Karasiewicz, Sylvain Dolédec, Sébastien Lefebvre
Software Mentions: 2
Published: over 7 years ago
10.7717/peerj.6658
Comparative analysis and characterization of the gut microbiota of four farmed snakes from southern China
Cited by: 21
Author(s): Bing Zhang, Jianke Ren, Daode Yang, Shuoran Liu, Xinguo Gong
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.3479
Alder and the Golden Fleece: high diversity of <i>Frankia</i> and ectomycorrhizal fungi revealed from <i>Alnus glutinosa</i> subsp. <i>barbata</i> roots close to a Tertiary and glacial refugium
Cited by: 12
Author(s): Mélanie Roy, A. Pozzi, Raphaëlle Gareil, Mélissande Nagati, Sophie Manzi, Imen Nouioui, Nino Sharikadze, Patricia Jargeat, Hervé Gryta, Pierre–Arthur Moreau, María P. Fernández, Monique Gardes
Software Mentions: 2
Published: over 7 years ago
10.3390/molecules16032646
Inter-Population Variability of Terpenoid Composition in Leaves of Pistacia lentiscus L. from Algeria: A Chemoecological Approach
Cited by: 20
Author(s): Samir Ait Said, Catherine Fernandez, Stéphane Greff, F. Jason Torre, Arezki Derridj, Thierry Gauquelin, Jean-Philippe Mévy
Software Mentions: 2
Published: over 13 years ago
10.3390/plants10040632
Distribution of Orchids with Different Rooting Systems in the Czech Republic
Cited by: 5
Author(s): Zuzana Štípková, Spyros Tsiftsis, Pavel Kindlmann
Software Mentions: 2
Published: over 3 years ago
10.3390/plants10020387
The Foliar Application of Rice Phyllosphere Bacteria induces Drought-Stress Tolerance in Oryza sativa (L.)
Cited by: 20
Author(s): Arun Kumar Devarajan, Gomathy Muthukrishanan, Jaak Truu, Marika Truu, Ivika Ostonen, Sevgan Subramanian, P. Panneerselvam, Sabarinathan Kuttalingam Gopalasubramanian
Software Mentions: 2
Published: almost 4 years ago
10.3390/molecules25174015
Free Amino Acids in Three Pleurotus Species Cultivated on Agricultural and Agro-Industrial By-Products
Cited by: 15
Author(s): Dimitra Tagkouli, Andriana C. Kaliora, Georgios Bekiaris, Georgios Koutrotsios, Margarita Christea, Georgios I. Zervakis, Nick Kalogeropoulos
Software Mentions: 2
Published: about 4 years ago
10.3390/molecules23040908
PKIDB: A Curated, Annotated and Updated Database of Protein Kinase Inhibitors in Clinical Trials
Cited by: 116
Author(s): Fabrice Carles, Stéphane Bourg, Christophe Meyer, Pascal Bonnet
Software Mentions: 2
Published: over 6 years ago
10.3390/molecules23123151
Alteration of Intestinal Flora Stimulates Pulmonary microRNAs to Interfere with Host Antiviral Immunity in Influenza
Cited by: 15
Author(s): Ping Peng, Bin Yu, Yucong Shi, Li Deng, Huachong Xu, Sizhi Wu
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pntd.0004346
The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water
Cited by: 67
Author(s): Abhilasha Karkey, Thibaut Jombart, Alan W. Walker, Corinne N. Thompson, Andrés Torres, Sabina Dongol, Nga Tran Vu Thieu, Duy Pham Thanh, Dung Tran Thi Ngoc, Phat Voong Vinh, Andrew C. Singer, Julian Parkhill, Guy Thwaites, Buddha Basnyat, Neil M. Ferguson, Stephen Baker
Software Mentions: 2
Published: almost 9 years ago
10.1111/mec.15763
Depletion of MHC supertype during domestication can compromise immunocompetence
Cited by: 9
Author(s): Willow Smallbone, Amy Ellison, Simon Poulton, Cock van Oosterhout, Joanne Cable
Software Mentions: 2
Published: almost 4 years ago
10.1186/1471-2148-10-84
The Mediterranean Sea as a barrier to gene flow: evidence from variation in and around the F7 and F12 genomic regions
Cited by: 11
Author(s): Georgios Athanasiadis, Emili González-Pérez, Esther Esteban, Jean‐Michel Dugoujon, Mark Stoneking, Pedro Moral
Software Mentions: 1
Published: over 14 years ago
10.1098/rsos.172185
Epigenetic and genetic variation among three separate introductions of the house sparrow ( <i>Passer domesticus</i> ) into Australia
Cited by: 31
Author(s): Elizabeth L. Sheldon, Aaron W. Schrey, Samuel C. Andrew, Alexandria K. Ragsdale, Simon C. Griffith
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0123834
Hybridization within Saccharomyces Genus Results in Homoeostasis and Phenotypic Novelty in Winemaking Conditions
Cited by: 29
Author(s): Telma da Silva, Warren Albertin, Christine Dillmann, Marina Bely, Stéphane la Guerche, Christophe Giraud, Sylvie Huet, Delphine Sicard, Isabelle Masneuf‐Pomarède, Dominique de Vienne, Philippe Marullo
Software Mentions: 1
Published: over 9 years ago
10.3389/fmicb.2020.00287
Phylogeography and Genetic Diversity of Francisella tularensis subsp. holarctica in France (1947–2018)
Cited by: 15
Author(s): Maëllys Kevin, Guillaume Girault, Yvan Caspar, Moulay Ali Cherfa, Christiane Mendy, Herbert Tomaso, Dolores Gavier‐Widén, Raquel Escudero, Max Maurin, Benoı̂t Durand, Claire Ponsart, Nora Madani
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-019-6246-4
Population genomics and morphological features underlying the adaptive evolution of the eastern honey bee (Apis cerana)
Cited by: 10
Author(s): Yancan Li, Tianle Chao, Fan Yunhan, Lou Delong, Guizhi Wang
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0001688
Defective Innate Cell Response and Lymph Node Infiltration Specify Yersinia pestis Infection
Cited by: 56
Author(s): Françoise Guinet, Patrick Avé, Louis Jones, Michel Huerre, Élisabeth Carniel
Software Mentions: 1
Published: over 16 years ago
10.3389/fimmu.2020.580412
Evolutionary Pattern of Interferon Alpha Genes in Bovidae and Genetic Diversity of IFNAA in the Bovine Genome
Cited by: 4
Author(s): Sunday O. Peters, Tanveer Hussain, A. S. Adenaike, Jordan Hazzard, Olanrewaju B. Morenikeji, Marcos De Donato, Sujay Paul, Masroor Ellahi Babar, Abdulmojeed Yakubu, Ikhide G. Imumorin
Software Mentions: 1
Published: about 4 years ago
10.3390/foods8040141
Relationships Between Cull Beef Cow Characteristics, Finishing Practices and Meat Quality Traits of Longissimus thoracis and Rectus abdominis
Cited by: 19
Author(s): Sébastien Couvreur, Guillain Le Bec, Didier Micol, Brigitte Picard
Software Mentions: 1
Published: over 5 years ago
10.1111/eva.12681
Mosaics, mixtures, rotations or pyramiding: What is the optimal strategy to deploy major gene resistance?
Cited by: 45
Author(s): Loup Rimbaud, Julien Papaïx, Luke G. Barrett, Jeremy J. Burdon, Peter H. Thrall
Software Mentions: 1
Published: about 6 years ago
10.1038/srep11858
Who started first? Bird species visiting novel birdfeeders
Cited by: 35
Author(s): Piotr Tryjanowski, Federico Morelli, Piotr Skórka, Artur Goławski, Piotr Indykiewicz, Anders Pape Møller, Cezary Mitrus, Dariusz Wysocki, Piotr Zduniak
Software Mentions: 1
Published: over 9 years ago
10.1038/srep15375
Genome-wide DNA methylation detection by MethylCap-seq and Infinium HumanMethylation450 BeadChips: an independent large-scale comparison
Cited by: 15
Author(s): Tim De Meyer, Pierre Bady, Geert Trooskens, Sebastian Kurscheid, Jocelyne Bloch, Johan M. Kros, Johannes A. Hainfellner, Roger Stupp, Mauro Delorenzi, Monika E. Hegi, Wim Van Criekinge
Software Mentions: 1
Published: about 9 years ago
10.1186/s12864-019-6333-6
An ancestry informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data
Cited by: 11
Author(s): Li J. Wang, Catherine W. Zhang, Sophia C. Su, Hung I.H. Chen, Yi-Chang Chiu, Zhao Lai, Hakim Bouamar, Amelie G. Ramirez, Francisco G. Cigarroa, Lu Sun, Yidong Chen
Software Mentions: 1
Published: almost 5 years ago
10.1038/srep20606
The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome
Cited by: 94
Author(s): Robert W. Li, Weizhong Li, Jiajie Sun, Peng Yu, R.L. Baldwin, Joseph F. Urban
Software Mentions: 1
Published: almost 9 years ago
10.1186/s40168-017-0258-6
High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice
Cited by: 114
Author(s): Liang Xiao, Si Brask Sonne, Qiang Feng, Ning Chen, Zeyu Xia, Xiaoping Li, Zhiwei Fang, Dongya Zhang, Even Fjære, Lisa Kolden Midtbø, Muriel Derrien, Floor Hugenholtz, Longqing Tang, Junhua Li, Jianfeng Zhang, Chuan Liu, Hao Qin, Ulla Vogel, Alicja Mortensen, Michiel Kleerebezem, Tine Rask Licht, Huanming Yang, Jian Wang, Yingrui Li, Manimozhiyan Arumugam, Jun Wang, Lise Madsen, Karsten Kristiansen
Software Mentions: 1
Published: over 7 years ago
10.1111/eva.12930
On the necessity of combining ethnobotany and genetics to assess agrobiodiversity and its evolution in crops: A case study on date palms (<i>Phoenix dactylifera</i> L.) in Siwa Oasis, Egypt
Cited by: 16
Author(s): Muriel Gros-Balthazard, Vincent Battesti, Sarah Ivorra, Laure Paradis, Frédérique Aberlenc, Oumarou Zango, Salwa Zehdi-Azouzi, Souhila Moussouni, Summar Abbas Naqvi, Claire Newton, Jean‐Frédéric Terral
Software Mentions: 1
Published: over 4 years ago
10.1038/srep24466
Stratification of Digestive Cancers with Different Pathological Features and Survival Outcomes by MicroRNA Expression
Cited by: 33
Author(s): Senwei Tang, William Ka Kei Wu, Xiangchun Li, Sunny H. Wong, Nathalie Wong, Matthew T. V. Chan, Joseph J.Y. Sung, Jun Yu
Software Mentions: 1
Published: over 8 years ago
10.1186/s12864-017-4195-3
Genome sequencing of 39 Akkermansia muciniphila isolates reveals its population structure, genomic and functional diverisity, and global distribution in mammalian gut microbiotas
Cited by: 99
Author(s): Xianfeng Guo, Shenghui Li, Jiachun Zhang, Feng Wu, Xiangchun Li, Dan Wu, Min Zhang, Zihao Ou, Zhuye Jie, Qiulong Yan, Peng Li, Jiangfeng Yi, Yongzheng Peng
Software Mentions: 1
Published: about 7 years ago
10.1186/1471-2180-13-170
Sub-inhibitory concentrations of some antibiotics can drive diversification of Pseudomonas aeruginosa populations in artificial sputum medium
Cited by: 38
Author(s): Elli A. Wright, Joanne L. Fothergill, Steve Paterson, Michael A. Brockhurst, Craig Winstanley
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0018592
One Problem, Many Solutions: Simple Statistical Approaches Help Unravel the Complexity of the Immune System in an Ecological Context
Cited by: 43
Author(s): Deborah M. Buehler, Maaike A. Versteegh, Kevin D. Matson, B. Irene Tieleman
Software Mentions: 1
Published: over 13 years ago
10.1002/ece3.4856
The competition–dispersal trade‐off exists in forbs but not in graminoids: A case study from multispecies alpine grassland communities
Cited by: 4
Author(s): Xiaolong Zhou, Chengzhi Li, Honglin Li, Qingdong Shi
Software Mentions: 1
Published: almost 6 years ago
10.1186/2049-2618-1-16
Co-occurrence of anaerobic bacteria in colorectal carcinomas
Cited by: 251
Author(s): René L. Warren, Douglas J Freeman, Stephen Pleasance, Peter H. Watson, Richard A. Moore, Kyla Cochrane, Emma Allen‐Vercoe, Robert A. Holt
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pntd.0001276
Restricted Application of Insecticides: A Promising Tsetse Control Technique, but What Do the Farmers Think of It?
Cited by: 30
Author(s): Fanny Bouyer, Saïdou Hamadou, Hassane Adakal, Renaud Lancelot, Frédéric Stachurski, Adrien Marie Gaston Bélem, Jérémy Bouyer
Software Mentions: 1
Published: over 13 years ago
10.1038/s41598-021-89847-4
Genetic structure of urban and non-urban populations differs between two common parid species
Cited by: 3
Author(s): Marcin Markowski, Piotr Minias, Mirosława Bańbura, Michał Glądalski, Adam Kaliński, Joanna Skwarska, Jarosław Wawrzyniak, Piotr Zieliński, Jerzy Bańbura
Software Mentions: 1
Published: over 3 years ago
10.1002/ece3.725
How many marker loci are necessary? Analysis of dominant marker data sets using two popular population genetic algorithms
Cited by: 19
Author(s): Michael F. Nelson, Neil O. Anderson
Software Mentions: 1
Published: about 11 years ago
10.1186/2049-2618-1-19
Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation
Cited by: 334
Author(s): Leopoldo N. Segal, Alexander V. Alekseyenko, José C. Clemente, Rohan Kulkarni, Benjamin Wu, Hao Chen, Kenneth I. Berger, Roberta M. Goldring, William N. Rom, Martin J. Blaser, Michael D. Weiden
Software Mentions: 1
Published: over 11 years ago
10.1038/srep44923
Molecular characterization reveals the complexity of previously overlooked coral-exosymbiont interactions and the implications for coral-guild ecology
Cited by: 3
Author(s): Héloïse Rouzé, Matthieu Leray, Hélène Magalon, Lucie Penin, Pauline Gélin, Nancy­ Knowlton­, Cécile Fauvelot
Software Mentions: 1
Published: over 7 years ago
10.1002/ece3.4131
Local adaptation through genetic differentiation in highly fragmented<i>Tilia cordata</i>populations
Cited by: 15
Author(s): Albin Lobo, Jon Kehlet Hansen, Eva Ortvald Erichsen, Birgitte Jacobsen, Erik Dahl Kjær
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-017-02660-w
Immune cell-derived cytokines contribute to obesity-related inflammation, fibrogenesis and metabolic deregulation in human adipose tissue
Cited by: 98
Author(s): Charles Caër, Christine Rouault, Tiphaine Le Roy, Christine Poitou, Judith Aron‐Wisnewsky, Adriana Torcivia, Jean-Christophe Bichet, Karine Clément, Michèle Guerre-Millo, Sébastien André
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-04485-z
Effects of habitat constraints on soil microbial community function
Cited by: 53
Author(s): Naoise Nunan, Julie Leloup, Léo Ruamps, Valérie Pouteau, Claire Chenu
Software Mentions: 1
Published: over 7 years ago
10.1002/ece3.6391
Historical human activities reshape evolutionary trajectories across both native and introduced ranges
Cited by: 8
Author(s): Anthony L. Einfeldt, Linley K. Jesson, Jason A. Addison
Software Mentions: 1
Published: over 4 years ago
10.18632/oncotarget.8939
Inflammatory and immune markers associated with physical frailty syndrome: findings from Singapore longitudinal aging studies
Cited by: 76
Author(s): Yanxia Lu, Crystal Tze Ying Tan, Ma Shwe Zin Nyunt, Esther Wing Hei Mok, Xavier Camous, Hassen Kared, Tamás Fülöp, Liang Feng, Tze Pin Ng, Anis Larbi
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-017-06747-2
Small fire refugia in the grassy matrix and the persistence of Afrotemperate forest in the Drakensberg mountains
Cited by: 26
Author(s): Hylton Adie, D. Johan Kotze, Michael J. Lawes
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-06655-5
Multiple uprising invasions of Pelophylax water frogs, potentially inducing a new hybridogenetic complex
Cited by: 24
Author(s): Christophe Dufresnes, Mathieu Denoël, Lionel di Santo, Sylvain Dubey
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0014398
Sex- and Diet-Specific Changes of Imprinted Gene Expression and DNA Methylation in Mouse Placenta under a High-Fat Diet
Cited by: 202
Author(s): Catherine Gallou-Kabani, Anne Gabory, Jörg Tost, Mohsen Karimi, Sylvain Mayeur, Jean Lésage, Elsa Boudadi, Marie-Sylvie Gross, Julien Taurelle, Alexandre Vigé, Christophe Breton, Brigitte Reusens, Claude Remacle, Didier Vieau, Tomas J. Ekström, Jean Philippe Jaïs, Claudine Junien
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0022717
Immunity Traits in Pigs: Substantial Genetic Variation and Limited Covariation
Cited by: 87
Author(s): Laurence Flori, Yu Tang Gao, Dénis Laloë, Gaëtan Lemonnier, Jean Jacques Leplat, Angélique Teillaud, Anne‐Marie Cossalter, Joëlle Laffitte, Philippe Pinton, Christiane de Vaureix, Marcel Bouffaud, Marie‐José Mercat, François Lefèvre, Isabelle P. Oswald, Jean Pierre Bidanel, Claire Rogel–Gaillard
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0191448
Patterns in reef fish assemblages: Insights from the Chagos Archipelago
Cited by: 22
Author(s): Melita Samoilys, Ronan Roche, Heather J. Koldewey, John R. G. Turner
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0145784
The Effect of Lactobacillus casei 32G on the Mouse Cecum Microbiota and Innate Immune Response Is Dose and Time Dependent
Cited by: 22
Author(s): Büşra Aktaş, Travis J. De Wolfe, Kanokwan Tandee, Nasia Safdar, B. J. Darien, J. L. Steele
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0015872
Virulence and Pathogen Multiplication: A Serial Passage Experiment in the Hypervirulent Bacterial Insect-Pathogen Xenorhabdus nematophila
Cited by: 15
Author(s): Élodie Chapuis, Sylvie Pagès, Vanya Emelianoff, Alain Givaudan, Jean‐Baptiste Ferdy
Software Mentions: 1
Published: almost 14 years ago
10.1002/ece3.6669
Colony‐age‐dependent variation in cuticular hydrocarbon profiles in subterranean termite colonies
Cited by: 7
Author(s): Johnalyn M. Gordon, Jan Šobotník, Thomas Chouvenc
Software Mentions: 1
Published: over 4 years ago