cran: WGCNA | Projects | Ecosyste.ms: Papers

10.3389/fcell.2020.598660

Construction of a Five-Super-Enhancer-Associated-Genes Prognostic Model for Osteosarcoma Patients
Cited by: 11
Author(s): Zhanbo Ouyang, Guohua Li, Haihong Zhu, Jiaojiao Wang, Tingting Qi, Qiang Qu, Chao Tu, Jian Qu, Qiong Lu
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2020.00224

Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses
Cited by: 11
Author(s): Lauriane Hennet, Angélique Berger, Noemí Trabanco, Emeline Ricciuti, Jean François Dufayard, Stéphanie Bocs, Denis Bastianelli, Laurent Bonnal, Sandrine Roques, Laura Rossini, Delphine Luquet, Nancy Terrier, David Pot
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.656636

LncRNA Landscape of Coronary Atherosclerosis Reveals Differentially Expressed LncRNAs in Proliferation and Migration of Coronary Artery Smooth Muscle Cells
Cited by: 6
Author(s): Yaqing Zhou, Sheng Zhang, Wenfeng Ji, Xiongkang Gan, Hua Liu, Can Hou, Jiaxin Chen, Yanjun Wang, Shu He, Hongliang Zhou, En-Zhi Jia
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.01256

Transcriptome and Flavonoids Metabolomic Analysis Identifies Regulatory Networks and Hub Genes in Black and White Fruits of Lycium ruthenicum Murray
Cited by: 16
Author(s): Tingting Li, Yunfang Fan, Huan Qin, Guoli Dai, Guo‐Xiu Li, Yanlong Li, Jingjin Wang, Yue Yin, Fang Chen, Xiaoya Qin, Yang Cao, Lin Tang
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2020.630790

Identification of IL10RA by Weighted Correlation Network Analysis and in vitro Validation of Its Association With Prognosis of Metastatic Melanoma
Cited by: 7
Author(s): Siyuan Cheng, Zhe Li, Wenhao Zhang, Zhiqiang Sun, Zhipeng Fan, Judong Luo, Hui Liu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.609832

Identification of LncRNAs Associated With FOLFOX Chemoresistance in mCRC and Construction of a Predictive Model
Cited by: 4
Author(s): Yiyi Zhang, Meifang Xu, Yanwu Sun, Ying Chen, Pan Chi, Zongbin Xu, Xingrong Lu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2021.600344

Up-Regulation of SALL4 Is Associated With Survival and Progression via Putative WNT Pathway in Gastric Cancer
Cited by: 7
Author(s): Yang Yang, Xiaohong Wang, Yiqiang Liu, Hanjie Ying, Zhongwu Li, Ziyu Li, Zhaode Bu, Xiaojiang Wu, Lianhai Zhang, Jiafu Ji
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-020-01109-y

Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain
Cited by: 16
Author(s): Joanna J. Bury, Annabelle Chambers, Paul R. Heath, Paul G. Ince, Pamela J. Shaw, Fiona E. Matthews, Carol Brayne, Julie E. Simpson, Stephen B. Wharton
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.00252

Integrative Analysis for Elucidating Transcriptomics Landscapes of Glucocorticoid-Induced Osteoporosis
Cited by: 3
Author(s): Xiaoxia Ying, Xiyun Jin, Pingping Wang, Yingkun He, Haomiao Zhang, Xiang Ren, Songling Chai, Wang Fu, Pengcheng Zhao, Chen Chen, Guowu Ma, Huiying Liu
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2016.00497

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System
Cited by: 67
Author(s): Collin M. Timm, Dale A. Pelletier, Sara Jawdy, Lee E. Gunter, Jeremiah A. Henning, Nancy L. Engle, Jayde A. Aufrecht, Emily Gee, Intawat Nookaew, Zamin K. Yang, Tse Yuan S Lu, Timothy J. Tschaplinski, Mitchel J. Doktycz, Gerald A. Tuskan, David J. Weston
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-015-1238-5

Gene coexpression networks reveal key drivers of phenotypic divergence in porcine muscle
Cited by: 10
Author(s): Xiao Ling Zhao, Zhaoyang Liu, Qingxin Liu
Software Mentions: 1
Published: over 11 years ago

10.3389/fpls.2021.679629

Transcriptome Analysis of Resistance to Fusarium Wilt in Mung Bean (Vigna radiata L.)
Cited by: 6
Author(s): Yuan‐Jen Chang, Feifei Sun, Shufeng Sun, Lanfen Wang, Jing Wu, Zhendong Zhu
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.734897

Potential Role of S-Palmitoylation in Cancer Stem Cells of Lung Adenocarcinoma
Cited by: 7
Author(s): Yitong Zhang, Fenglan Li, Kexin Fu, Xiqing Liu, I-Chia Lien, Hui Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fcvm.2014.00011

Dual Linkage of a Locus to Left Ventricular Mass and a Cardiac Gene Co-Expression Network Driven by a Chromosome Domain
Cited by: 2
Author(s): Marie Pier Scott-Boyer, Samantha D. Praktiknjo, Bastien Llamas, Sylvie Picard, Christian F. Deschepper
Software Mentions: 1
Published: almost 12 years ago

10.3389/fcvm.2019.00100

Isoproterenol-Induced Cardiac Diastolic Dysfunction in Mice: A Systems Genetics Analysis
Cited by: 14
Author(s): Jessica Wang, Adriana Huertas-Vázquez, Yibin Wang, Aldons J. Lusis
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms21030699

Review—Current Concepts in Inflammatory Skin Diseases Evolved by Transcriptome Analysis: In-Depth Analysis of Atopic Dermatitis and Psoriasis
Cited by: 36
Author(s): Julius Schwingen, Mustafa Kaplan, Florian C. Kurschus
Software Mentions: 1
Published: almost 7 years ago

10.3389/fbioe.2020.00177

Investigation of miRNA and mRNA Co-expression Network in Ependymoma
Cited by: 12
Author(s): Feili Liu, Hang Dong, Zi Mei, Tao Huang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21041445

Cross-Species Root Transcriptional Network Analysis Highlights Conserved Modules in Response to Nitrate between Maize and Sorghum
Cited by: 5
Author(s): Hongyang Du, Lei Ning, Bing He, Yuancong Wang, Min Ge, Jing Xu, Han Zhao
Software Mentions: 1
Published: over 6 years ago

10.3389/fbioe.2021.651895

Functional Diversity Facilitates Stability Under Environmental Changes in an Outdoor Microalgal Cultivation System
Cited by: 8
Author(s): Lina Mattsson, Eva Sörenson, Eric Capo, Hanna Farnelid, Maurice Hirwa, Martin Olofsson, Fredrik Svensson, Elin Lindehoff, Catherine Legrand
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2018.01155

Shedding Light on Chemically Mediated Tri-Trophic Interactions: A 1H-NMR Network Approach to Identify Compound Structural Features and Associated Biological Activity
Cited by: 10
Author(s): Lora A. Richards, Celso José Bruno de Oliveira, Lee A. Dyer, Arran Rumbaugh, Federico Urbano-Muñoz, Ian S. Wallace, Craig D. Dodson, Christopher S. Jeffrey
Software Mentions: 1
Published: about 8 years ago

10.3389/fnagi.2018.00259

Gene Expression Analysis Reveals Novel Gene Signatures Between Young and Old Adults in Human Prefrontal Cortex
Cited by: 25
Author(s): Huanming Yang, Pan Jiang, Ying Xin, Xiang-Nan Mi, Jiahui Wang, Qin Gao, Hongyu Luo
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2017.00398

Spatiotemporal Transcriptome Analysis Provides Insights into Bicolor Tepal Development in Lilium “Tiny Padhye”
Cited by: 39
Author(s): Liang Xu, Panpan Yang, Yue Feng, Hua Xu, Yuwei Cao, Yuchao Tang, Suxia Yuan, Xinyan Li, Jun Ming
Software Mentions: 1
Published: over 9 years ago

10.3389/fnagi.2017.00166

Dissecting the Molecular Mechanisms of Neurodegenerative Diseases through Network Biology
Cited by: 54
Author(s): José A. Santiago, Virginie Bottero, Judith A. Potashkin
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-020-07106-8

Transcriptional landscape of the embryonic chicken Müllerian duct
Cited by: 8
Author(s): Zahida Yesmin Roly, Rasoul Godini, Martín Estermann, Andrew T. Major, Roger Pocock, Craig A. Smith
Software Mentions: 1
Published: about 6 years ago

10.3389/fpsyt.2019.00706

Integrated Analysis of Brain Transcriptome Reveals Convergent Molecular Pathways in Autism Spectrum Disorder
Cited by: 12
Author(s): Xiaodan Li, Yuncong Zhang, Luxi Wang, Yunqing Lin, Zhaomin Gao, Xiaolei Zhan, Yan Huang, Chongde Sun, Dong Wang, Shuang Liang, Lijie Wu
Software Mentions: 1
Published: about 7 years ago

10.3389/fnagi.2016.00171

A Systems View of the Differences between APOE ε4 Carriers and Non-carriers in Alzheimer’s Disease
Cited by: 12
Author(s): Shan Jiang, Ling Tang, Na Zhao, Wanling Yang, Yu Qiu, Hongzhuan Chen
Software Mentions: 1
Published: over 10 years ago

10.3390/foods10020391

Transcriptome and Metabolome Dynamics Explain Aroma Differences between Green and Red Prickly Ash Fruit
Cited by: 24
Author(s): Xitong Fei, Yichen Qi, Yu Li, Shujie Wang, Hu Hong, Anzhi Wei
Software Mentions: 1
Published: over 5 years ago

10.3389/fpsyt.2020.543893

Non-Coding RNAs in Psychiatric Disorders and Suicidal Behavior
Cited by: 38
Author(s): Yuta Yoshino, Yogesh K. Dwivedi
Software Mentions: 1
Published: about 6 years ago

10.3389/fpsyt.2020.580307

A Weighted Gene Co-expression Network Analysis Reveals lncRNA Abnormalities in the Peripheral Blood Associated With Ultra-High-Risk for Psychosis
Cited by: 2
Author(s): Yan Ren, Wei Li, Sha Li, Zhi Li, Jiaying Wang, Hong Yang, Yong Xu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpsyt.2021.581093

Gene Expression Differences Between Young Adults Based on Trauma History and Post-traumatic Stress Disorder
Cited by: 0
Author(s): Kaitlin Bountress, Vladimir I. Vladimirov, Gowon O. McMichael, Zachary N. Taylor, Gary Hardiman, Dongjun Chung, Zachary W. Adams, Carla Kmett Danielson, Ananda B. Amstadter
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21051824

The Role of Gibberellins in Regulation of Nitrogen Uptake and Physiological Traits in Maize Responding to Nitrogen Availability
Cited by: 20
Author(s): Yubin Wang, Qizheng Yao, Yushi Zhang, Yuexia Zhang, Jiapeng Xing, Benzhou Yang, Guohua Mi, Zhaohu Li, Mingcai Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21051675

Genetic Identification and Transcriptome Analysis of Lintless and Fuzzless Traits in Gossypium arboreum L.
Cited by: 18
Author(s): Xueying Liu, Philippe Moncuquet, Qian Zhu, Warwick N. Stiller, Zhengsheng Zhang, Iain W. Wilson
Software Mentions: 1
Published: over 6 years ago

10.1002/2211-5463.12872

SPC25 may promote proliferation and metastasis of hepatocellular carcinoma via p53
Cited by: 12
Author(s): Fengjuan Chen, Ka Zhang, Yilin Huang, Fang Luo, Kunpeng Hu, Qing-Qing Cai
Software Mentions: 1
Published: over 6 years ago

10.1002/2211-5463.13056

DNA methylation subtypes for ovarian cancer prognosis
Cited by: 10
Author(s): Lili Yin, Ningning Zhang
Software Mentions: 1
Published: over 5 years ago

10.1155/2012/120350

Molecular Mechanisms of Same TCM Syndrome for Different Diseases and Different TCM Syndrome for Same Disease in Chronic Hepatitis B and Liver Cirrhosis
Cited by: 27
Author(s): Zhixin Guo, Shuhao Yu, Yan Guan, Ying-Ya Li, Yi‐Yu Lu, Hui Zhang, Shi‐Bing Su
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12983-019-0336-7

Gene expression vs. sequence divergence: comparative transcriptome sequencing among natural Rhinolophus ferrumequinum populations with different acoustic phenotypes
Cited by: 12
Author(s): Hanbo Zhao, Hui Wang, Tong Liu, Sen Liu, Longru Jin, Xiaobin Huang, Wentao Dai, Keping Sun, Jiang Feng
Software Mentions: 1
Published: about 7 years ago

10.1155/2021/6522191

Application of Multigroup Technology in Non-Small-Cell Lung Cancer with Qi Stagnation and Blood Stasis Syndrome
Cited by: 0
Author(s): Guan-Jun Ma, Qian Xiang, Zhuo Chen, Shasha Chen, Aiqin Zhang
Software Mentions: 1
Published: over 5 years ago

10.1007/s10142-018-0607-y

Comparison of gene co-networks reveals the molecular mechanisms of the rice (Oryza sativa L.) response to Rhizoctonia solani AG1 IA infection
Cited by: 15
Author(s): Jinfeng Zhang, Wenjuan Zhao, Rong Fu, Chunyan Fu, Lingxia Wang, Huainian Liu, Shuangcheng Li, Qi Deng, Shiquan Wang, Jun Zhu, Yueyang Liang, Ping Li, Aiping Zheng
Software Mentions: 1
Published: over 8 years ago

10.1007/s10142-019-00678-z

Global transcriptome analysis uncovers the gene co-expression regulation network and key genes involved in grain development of wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Qing Chi, Lijian Guo, Meng Ma, Lijian Zhang, Hude Mao, Baowei Wu, Xiangli Liu, Ricardo H. Ramírez-González, Cristóbal Uauy, R. Appels, Huixian Zhao
Software Mentions: 1
Published: over 7 years ago

10.1534/g3.112.004788

Systems-Level Analysis of Genome-Wide Association Data
Cited by: 43
Author(s): Charles R. Farber
Software Mentions: 1
Published: almost 14 years ago

10.2217/epi-2016-0017

How to make DNA methylome wide association studies more powerful
Cited by: 27
Author(s): Xinyi Lin, Sheila J. Barton, Joanna D. Holbrook
Software Mentions: 1
Published: about 10 years ago

10.1534/g3.116.033894

Preservation Analysis of Macrophage Gene Coexpression Between Human and Mouse Identifies PARK2 as a Genetically Controlled Master Regulator of Oxidative Phosphorylation in Humans
Cited by: 12
Author(s): Veronica Codoni, Yuna Blum, Mete Civelek, Carole Proust, Oscar Franzén, Johan Björkegren, Wilfried Le Goff, François Cambien, Aldons J. Lusis, David‐Alexandre Trégouët
Software Mentions: 1
Published: about 10 years ago

10.1186/1756-8935-6-28

Epigenetic coordination of signaling pathways during the epithelial-mesenchymal transition
Cited by: 42
Author(s): Marcin Cieślik, Stephen A. Hoang, Natalya Baranova, Sanjay V. Chodaparambil, Manish Kumar, David F. Allison, Xiaojiang Xu, J. Jacob Wamsley, Lisa G. Gray, David R. Jones, Marty W. Mayo, Stefan Bekiranov
Software Mentions: 1
Published: about 13 years ago

10.1186/s13072-019-0257-x

Retinal-input-induced epigenetic dynamics in the developing mouse dorsal lateral geniculate nucleus
Cited by: 4
Author(s): Jianlin He, Xiguang Xu, Aboozar Monavarfeshani, Sharmi Banerjee, Michael A. Fox, Hehuang Xie
Software Mentions: 1
Published: over 7 years ago

10.1534/g3.117.042408

A Systemic Analysis of Transcriptomic and Epigenomic Data To Reveal Regulation Patterns for Complex Disease
Cited by: 6
Author(s): Chao Xu, Jigang Zhang, Dongdong Lin, Lan Zhang, Hui Shen, Hong‐Wen Deng
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.117.043679

Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat
Cited by: 52
Author(s): Philippa Borrill, Sophie A Harrington, Cristóbal Uauy
Software Mentions: 1
Published: about 9 years ago

10.18632/aging.202432

Identification of hub genes and key pathways in the emphysema phenotype of COPD
Cited by: 6
Author(s): Qiunan Zuo, Youyu Wang, Deqing Yang, Shujin Guo, Xiaohui Li, Jiajia Dong, Chun Wan, Yongchun Shen, Fuqiang Wen
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.18646

Identification of two novel biomarkers of rectal carcinoma progression and prognosis via co-expression network analysis
Cited by: 19
Author(s): Min Sun, Taojiao Sun, Zhong He, Bin Xiong
Software Mentions: 1
Published: over 9 years ago

10.1002/ece3.6206

Transcriptional analyses reveal the molecular mechanism governing shade tolerance in the invasive plant <i>Solidago canadensis</i>
Cited by: 8
Author(s): Miao Wu, Zeyu Li, Jianbo Wang
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.7024

Comparative transcriptomics reveals the molecular genetic basis of pigmentation loss in <i>Sinocyclocheilus</i> cavefishes
Cited by: 13
Author(s): Chun‐Qing Li, Hongyu Chen, Yinchen Zhao, Shanyuan Chen, Hang Xiao
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13637-017-0059-z

From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data
Cited by: 71
Author(s): Danila Vella, Italo Zoppis, Giovanni Mauri, Pierluigi Mauri, Dario Di Silvestre
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.120.401275

Dissecting the Genetic Architecture of Cystatin C in Diversity Outbred Mice
Cited by: 9
Author(s): Md. Nazmul Huda, Melissa VerHague, Jody Albright, Tangi Smallwood, Timothy A. Bell, Excel Que, Darla R. Miller, Baback Roshanravan, Hooman Allayee, Fernando P Pardo Manuel De Villena, Brian J. Bennett
Software Mentions: 1
Published: over 6 years ago

10.1186/s13637-016-0052-y

Graph reconstruction using covariance-based methods
Cited by: 9
Author(s): Nurgazy Sulaimanov, Heinz Koeppl
Software Mentions: 1
Published: almost 10 years ago

10.1534/g3.120.401067

NetExtractor: Extracting a Cerebellar Tissue Gene Regulatory Network Using Differentially Expressed High Mutual Information Binary RNA Profiles
Cited by: 2
Author(s): Benafsh Husain, Allison R Hickman, Yuqing Hang, Benjamin T. Shealy, Karan Sapra, Frank Alexander Feltus
Software Mentions: 1
Published: about 6 years ago

10.1007/s13167-019-00175-0

Identification of clinical trait–related lncRNA and mRNA biomarkers with weighted gene co-expression network analysis as useful tool for personalized medicine in ovarian cancer
Cited by: 88
Author(s): Na Li, Xianquan Zhan
Software Mentions: 1
Published: over 7 years ago

10.1007/s10120-018-00911-x

Prognostic and clinicopathological significance of long noncoding RNA CTD-2510F5.4 in gastric cancer
Cited by: 30
Author(s): Zhe Wang, Baoli Qin
Software Mentions: 1
Published: almost 8 years ago

10.1242/dmm.029074

Temporal analysis of hippocampal CA3 gene co-expression networks in a rat model of febrile seizures
Cited by: 10
Author(s): Hátylas Azevedo, Nathália Amato Khaled, Paula Santos, Fernanda Bernardi Bertonha, Carlos Alberto Moreira-Filho
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-018-4756-0

Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis
Cited by: 49
Author(s): Wenjing Tao, Jinlin Chen, Dejie Tan, Jing Yang, Lina Sun, Jing Wei, Matthew A. Conte, Thomas D. Kocher, Deshou Wang
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-019-6366-x

Transcriptome sequencing of Saccharina japonica sporophytes during whole developmental periods reveals regulatory networks underlying alginate and mannitol biosynthesis
Cited by: 26
Author(s): Zhanru Shao, Pengyan Zhang, Chao Lu, Shaoxuan Li, Zhihang Chen, Xiuliang Wang, Delin Duan
Software Mentions: 1
Published: almost 7 years ago

10.1111/acel.13414

Epigenetic clock and methylation studies in elephants
Cited by: 31
Author(s): Natalia A. Prado, Janine L. Brown, Joseph A. Zoller, Amin Haghani, Mingjia Yao, Lora Bagryanova, Michael G. Campana, Jesús E. Maldonado, Kenneth Raj, Dennis L. Schmitt, Todd R. Robeck, Steve Horvath
Software Mentions: 1
Published: over 5 years ago

10.1242/dmm.048298

NODAL/TGFβ signalling mediates the self-sustained stemness induced by PIK3CAH1047R homozygosity in pluripotent stem cells
Cited by: 4
Author(s): Ralitsa R. Madsen, James Longden, Rachel Knox, Xavier Robin, Franziska Völlmy, Kenneth G. MacLeod, Larissa S. Moniz, Neil O. Carragher, Rune Linding, Bart Vanhaesebroeck, Robert K. Semple
Software Mentions: 1
Published: over 5 years ago

10.1007/s00125-018-4708-x

Innate immune activity as a predictor of persistent insulin secretion and association with responsiveness to CTLA4-Ig treatment in recent-onset type 1 diabetes
Cited by: 30
Author(s): Susanne M. Cabrera, Samuel Engle, Mary L. Kaldunski, Jia Song, Rhonda Geoffrey, Pippa Simpson, Anikó Szabó, Cate Speake, Carla J. Greenbaum, Yi-Guang Chen, Martin J. Hessner
Software Mentions: 1
Published: about 8 years ago

10.1038/s41438-020-0279-3

Transcriptome profiles reveal that gibberellin-related genes regulate weeping traits in crape myrtle
Cited by: 14
Author(s): Suzhen Li, Tangchun Zheng, Xiaokang Zhuo, Zhuojiao Li, Lulu Li, Ping Li, Like Qiu, Huitang Pan, Jia Wang, Tangren Cheng, Qixiang Zhang
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.102971

Prognostic values of immune scores and immune microenvironment-related genes for hepatocellular carcinoma
Cited by: 22
Author(s): Penglei Ge, Shifang Li, Weiwei Wang, Chunbo Li, Yu-Bin Fu, Zhengkai Feng, Lin Li, Gong Zhang, Zhiqiang Gao, Xiaowei Dang, Yang Wu
Software Mentions: 1
Published: over 6 years ago

10.1093/dnares/dsaa006

Integrating transcriptome and metabolome reveals molecular networks involved in genetic and environmental variation in tobacco
Cited by: 20
Author(s): Pingping Li, Jianxun Luo, Qingyuan Zheng, Qiansi Chen, Zheyu Niu, Shengchun Xu, Yalong Xu, Lifeng Jin, Guoyun Xu, Xin Lü, Guowang Xu, Gangjun Wang, Jianfeng Shao, Haiming Xu, Peijian Cao, Huina Zhou, Xusheng Wang
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.13349

Epigenetic clock and methylation study of oocytes from a bovine model of reproductive aging
Cited by: 19
Author(s): Paweł Kordowitzki, Amin Haghani, Joseph A. Zoller, Caesar Z. Li, Ken Raj, Matthew L Spangler, Steve Horvath
Software Mentions: 1
Published: over 5 years ago

10.1093/dnares/dsz016

Phased genome sequence of an interspecific hybrid flowering cherry, ‘Somei-Yoshino’ (Cerasus × yedoensis)
Cited by: 44
Author(s): Kenta Shirasawa, Tomoya Esumi, Hideki Hirakawa, Hideyuki Tanaka, Akihiro Itai, Andrea Ghelfi, Hideki Nagasaki, Sachiko Isobe
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-15-730

Gene co-expression network analysis in Rhodobacter capsulatus and application to comparative expression analysis of Rhodobacter sphaeroides
Cited by: 18
Author(s): Lourdes Peña‐Castillo, Ryan G. Mercer, Anastasia Gurinovich, Stephen Callister, Aaron Wright, Alexander B. Westbye, J. Thomas Beatty, Andrew S. Lang
Software Mentions: 1
Published: almost 13 years ago

10.1093/dnares/dsu024

Associative Transcriptomics Study Dissects the Genetic Architecture of Seed Glucosinolate Content in Brassica napus
Cited by: 60
Author(s): Guangyuan Lu, Andrea L. Harper, Martin Trick, Colin Morgan, F C Fråser, Carmel M. O’Neill, Ian Bancroft
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-020-07352-w

Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Cited by: 8
Author(s): Rongfa Chen, Yanting Fan, Huiwen Zhou, Shanping Mo, Zhongfeng Zhou, Haifeng Yan, Ting Luo, Xing Huang, Mengling Weng, Prakash Lakshmanan, Yang‐Rui Li, Lihang Qiu, Jianming Wu
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21176372

Decoding Susceptibility to Respiratory Viral Infections and Asthma Inception in Children
Cited by: 11
Author(s): James F. Read, Anthony Bosco
Software Mentions: 1
Published: about 6 years ago

10.1038/s41438-021-00653-5

Genomic and transcriptomic analyses of Citrus sinensis varieties provide insights into Valencia orange fruit mastication trait formation
Cited by: 8
Author(s): Guizhi Feng, Xiu Ai, Hualin Yi, Wen‐Wu Guo, Juxun Wu
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21175967

The Regulatory Network of CMPG1-V in Wheat–Blumeria graminis f. sp. tritici Interaction Revealed by Temporal Profiling Using RNA-Seq
Cited by: 5
Author(s): Jia Liu, Li Sun, Yiming Chen, Luyang Wei, Yongli Hao, Zhongyu Yu, Zongkuan Wang, Heng Zhang, Xu Zhang, Mengli Li, Haiyan Wang, Jin Xiao, Xiue Wang
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-15-33

Sex differences in the human peripheral blood transcriptome
Cited by: 124
Author(s): Ritsert C. Jansen, Sandra Batista, Andrew I. Brooks, Jay A. Tischfield, Gonneke Willemsen, Gerard van Grootheest, Jouke Jan Hottenga, Yuri Milaneschi, Hamdi Mbarek, Vered Madar, Wouter J. Peyrot, Jacqueline M. Vink, C. L. Verweij, Eco J. C. de Geus, Johannes H. Smit, Fred A. Wright, Patrick F. Sullivan, Dorret I. Boomsma, Brenda W. J. H. Penninx
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41438-019-0225-4

Tea plant genomics: achievements, challenges and perspectives
Cited by: 90
Author(s): Enhua Xia, Wei Tong, Qiong Wu, Wei Shu, Jian Zhao, Zhengzhu Zhang, Chaoling Wei, Xiaochun Wan
Software Mentions: 1
Published: almost 7 years ago

10.1007/s11897-021-00504-3

Single-Cell RNA Sequencing of the Adult Mammalian Heart—State-of-the-Art and Future Perspectives
Cited by: 9
Author(s): Monika M Gladka
Software Mentions: 1
Published: over 5 years ago

10.2174/138920209788921029

One Decade Later: What has Gene Expression Profiling Told us About Neuronal Cell Types, Brain Function and Disease?
Cited by: 3
Author(s): Elizabeth Díaz
Software Mentions: 1
Published: about 17 years ago

10.1038/s41438-020-0245-0

A temporal gene expression map of Chrysanthemum leaves infected with Alternaria alternata reveals different stages of defense mechanisms
Cited by: 21
Author(s): Ye Liu, Jingjing Xin, Lina Liu, Aiping Song, Zhiyong Guan, Weimin Fang, Fadi Chen
Software Mentions: 1
Published: over 6 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479