cran: WGCNA | Projects | Ecosyste.ms: Papers

10.3389/fgene.2019.01323

An Integrated Model Based on a Six-Gene Signature Predicts Overall Survival in Patients With Hepatocellular Carcinoma
Cited by: 40
Author(s): Wenli Li, Jianjun Lu, Zhu Ma, Jia-feng Zhao, Jun Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.01258

Candidate Regulators of Dyslipidemia in Chromosome 1 Substitution Lines Using Liver Co-Expression Profiling Analysis
Cited by: 1
Author(s): Fuyi Xu, Maochun Wang, Shixian Hu, Yuxun Zhou, John Collyer, Kai Li, Hongyan Xu, Junhua Xiao
Software Mentions: 1
Published: over 5 years ago

10.1186/gb-2012-13-10-r97

Aging effects on DNA methylation modules in human brain and blood tissue
Cited by: 527
Author(s): Steve Horvath, Yafeng Zhang, Peter Langfelder, René S. Kahn, Marco P. Boks, Kristel R. van Eijk, Leonard H. van den Berg, Roel A. Ophoff
Software Mentions: 1
Published: over 13 years ago

10.3389/fgene.2018.00508

Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response
Cited by: 32
Author(s): Alexandra Maertens, Vy Tran, André Kleensang, Thomas Hartung
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-014-0457-4

The small RNA diversity from Medicago truncatularoots under biotic interactions evidences the environmental plasticity of the miRNAome
Cited by: 69
Author(s): Damien Formey, Erika Sallet, Christine Lelandais‐Brière, Cécile Ben, Pilar Bustos-Sanmamed, Andréas Niebel, Florian Frugier, Jean Combier, Frederic Debellé, Caroline Hartmann, Julie Poulain, Fréderick Gavory, Patrick Wincker, Christophe Roux, Laurent Gentzbittel, Jérôme Gouzy, Martín Crespi
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13059-014-0525-9

Characterizing heterogeneity in leukemic cells using single-cell gene expression analysis
Cited by: 58
Author(s): Assieh Saadatpour, Guoji Guo, Stuart H. Orkin, Guo Cheng Yuan
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2019.01398

Identification of the Key Factors Related to Bladder Cancer by lncRNA-miRNA-mRNA Three-Layer Network
Cited by: 13
Author(s): Xiaoxia Wang, Yanrui Ding, Jie Wang, Yanyan Wu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-014-0475-2

Big effects of small RNAs on legume root biotic interactions
Cited by: 2
Author(s): Huan Wang, Nam‐Hai Chua
Software Mentions: 1
Published: almost 11 years ago

10.3389/fgene.2018.00406

De novo Mutations (DNMs) in Autism Spectrum Disorder (ASD): Pathway and Network Analysis
Cited by: 37
Author(s): Aitana Alonso-González, Cristina Rodríguez-Fontenla, Ángel Carracedo
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2021.615284

Comparative Analyses of Full-Length Transcriptomes Reveal Gnetum luofuense Stem Developmental Dynamics
Cited by: 7
Author(s): Chen Hou, Huiming Lian, Yanling Cai, Yingli Wang, Dongcheng Liang, Boxiang He
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2021.680120

Transcriptome Co-expression Network Analysis Identifies Key Genes Regulating Conchosporangia Maturation of Pyropia haitanensis
Cited by: 3
Author(s): Yi-Sheng Lin, Kai Xu, Yan Xu, Dehua Ji, Changsheng Chen, Wenlei Wang, Chaotian Xie
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2021.695625

Translational Proteomics Analysis of Anthracycline-Induced Cardiotoxicity From Cardiac Microtissues to Human Heart Biopsies
Cited by: 11
Author(s): Nhan Nguyen, Tancredo Augusto Feitosa de Souza, Marcha Verheijen, Hans Gmuender, Nathalie Selevsek, Ralph Schlapbach, Jos Kleinjans, Danyel Jennen
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2019.01359

Transcriptome Changes of Mycobacterium marinum in the Process of Resuscitation From Hypoxia-Induced Dormancy
Cited by: 6
Author(s): Jun Jiang, Lin Chen, Junli Zhang, Yuchen Wang, Lianfang Shen, Kun Yang, Wenjun Xiao, Li Yao, Lu Zhang, Jun Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fendo.2020.570604

Immune Cell Confrontation in the Papillary Thyroid Carcinoma Microenvironment
Cited by: 56
Author(s): Zhenyu Xie, Xin Li, Yuzhen He, Song Wu, Shiyue Wang, Jing Sun, Yuchen He, Yu Lun, Jian Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fendo.2021.666393

METTL3 Is Involved in the Development of Graves’ Disease by Inducing SOCS mRNA m6A Modification
Cited by: 6
Author(s): Ronghua Song, Peng Du, Chaoqun Gao, Xuerong Liu, Jinan Zhang
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-019-5778-y

The adaptation strategies of Herpetospermum pedunculosum (Ser.) Baill at altitude gradient of the Tibetan plateau by physiological and metabolomic methods
Cited by: 21
Author(s): Yong Zhao, Frank F. Xu, Jia Liu, Fang Guan, Quan Hong, Fanjuan Meng
Software Mentions: 1
Published: about 6 years ago

10.3389/fendo.2020.00272

Characteristics of the Urinary Microbiome From Patients With Gout: A Prospective Study
Cited by: 15
Author(s): Y.N. Ning, Ge Yang, Yangchun Chen, Xue Qiang Zhao, Hongyan Qian, Yuan Liu, Shiju Chen, Guixiu Shi
Software Mentions: 1
Published: about 5 years ago

10.3389/fendo.2018.00500

The Implications of Vitamin D Status During Pregnancy on Mother and her Developing Child
Cited by: 79
Author(s): Carol L. Wagner, Bruce W. Hollis
Software Mentions: 1
Published: almost 7 years ago

10.3389/fncel.2020.595607

Comprehensive Profiling of Gene Expression in the Cerebral Cortex and Striatum of BTBRTF/ArtRbrc Mice Compared to C57BL/6J Mice
Cited by: 8
Author(s): Shota Mizuno, Jun Na Hirota, Chiaki Ishii, Hirohide Iwasaki, Yoshitake Sano, Teiichi Furuichi
Software Mentions: 1
Published: over 4 years ago

10.1128/mSystems.00036-16

RNA Sequencing-Based Genome Reannotation of the Dermatophyte <i>Arthroderma benhamiae</i> and Characterization of Its Secretome and Whole Gene Expression Profile during Infection
Cited by: 30
Author(s): Van Du T. Tran, Niccolò De Coi, Marc Feuermann, Emanuel Schmid‐Siegert, Elena-Tatiana Băguţ, Bernard Mignon, Patrice Waridel, Corinne Peter, Sylvain Pradervand, Marco Pagni, Michel Monod
Software Mentions: 1
Published: almost 9 years ago

10.18632/aging.202432

Identification of hub genes and key pathways in the emphysema phenotype of COPD
Cited by: 6
Author(s): Qiunan Zuo, Youyu Wang, Deqing Yang, Shujin Guo, Xiaohui Li, Jiajia Dong, Chun Wan, Yongchun Shen, Fuqiang Wen
Software Mentions: 1
Published: over 4 years ago

10.3389/fcimb.2019.00346

Identification of Gut Microbiota and Metabolites Signature in Patients With Irritable Bowel Syndrome
Cited by: 33
Author(s): Shengtao Zhu, Si Liu, Hengcun Li, Zheng Zhang, Qian Zhang, Lei Chen, Yu Zhao, Yang Chen, Jiafeng Gu, Li Min, Shutian Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2018.00307

Gene Expression Signatures Can Aid Diagnosis of Sexually Transmitted Infection-Induced Endometritis in Women
Cited by: 15
Author(s): Xiaojing Zheng, Catherine M. O’Connell, Wujuan Zhong, Taylor B. Poston, Harold C. Wiesenfeld, Sharon L. Hillier, Maria Trent, Charlotte A. Gaydos, George C. Tseng, Brandie D. Taylor, Toni Darville
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcell.2021.686547

RPL19 Is a Prognostic Biomarker and Promotes Tumor Progression in Hepatocellular Carcinoma
Cited by: 6
Author(s): Benchen Rao, Jianhao Li, Tong Ren, Jing Yang, Guizhen Zhang, Liwen Liu, Ang Li, Mengling Huang, Zhigang Ren, Zujiang Yu
Software Mentions: 1
Published: about 4 years ago

10.18632/oncotarget.18646

Identification of two novel biomarkers of rectal carcinoma progression and prognosis via co-expression network analysis
Cited by: 19
Author(s): Min Sun, Taojiao Sun, Zhong He, Bin Xiong
Software Mentions: 1
Published: about 8 years ago

10.3389/fcell.2021.653528

Comprehensive Analysis Reveals the Potential Regulatory Mechanism Between Ub–Proteasome System and Cell Cycle in Colorectal Cancer
Cited by: 1
Author(s): Zhiyuan Zhang, Jingwen Chen, Wentao Tang, Qi Sheng Feng, Jiacheng Xu, Ren Li
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2021.608367

Sall4 and Myocd Empower Direct Cardiac Reprogramming From Adult Cardiac Fibroblasts After Injury
Cited by: 10
Author(s): Hong Zhao, Yi Zhang, Xinmin Xu, Qixin Sun, Caiqiong Yang, Hao Wang, Junbo Yang, Yang Yang, Xiaochun Yang, Yi Liu, Yang Zhao
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2020.592616

Functional Gene Expression Differentiation of the Notch Signaling Pathway in Female Reproductive Tract Tissues—A Comprehensive Review With Analysis
Cited by: 9
Author(s): Magdalena Orzechowska, Dorota Anusewicz, Andrzej K. Bednarek
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-015-1320-z

Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita
Cited by: 69
Author(s): Vera Brekhman, Assaf Malik, Brian J. Haas, Noa Sher, Tamar Lotan
Software Mentions: 1
Published: over 10 years ago

10.3389/fcell.2021.639615

Establishment of Novel DNA Methylation-Based Prostate Cancer Subtypes and a Risk-Predicting Eight-Gene Signature
Cited by: 3
Author(s): Enchong Zhang, Fujisawa Shiori, Oscar YongNan Mu, Jieqian He, Yuntian Ge, Hongliang Wu, Mo Zhang, Yi Song
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2019.00200

The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections
Cited by: 18
Author(s): Hugh D. Mitchell, Amie J. Eisfeld, Kelly G. Stratton, Natalie C. Heller, Lisa Bramer, Ji Wen, Jason McDermott, Lisa E. Gralinski, Amy C. Sims, Mai Quynh Le, Ralph S. Baric, Yoshihiro Kawaoka, Katrina M. Waters
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.598660

Construction of a Five-Super-Enhancer-Associated-Genes Prognostic Model for Osteosarcoma Patients
Cited by: 11
Author(s): Zhanbo Ouyang, Guohua Li, Haihong Zhu, Jiaojiao Wang, Tingting Qi, Qiang Qu, Chao Tu, Jian Qu, Qiong Lu
Software Mentions: 1
Published: over 4 years ago

10.1186/gm452

Genes and pathways underlying regional and cell type changes in Alzheimer's disease
Cited by: 209
Author(s): Jeremy A. Miller, Randall L. Woltjer, Jeff M Goodenbour, Steve Horvath, Daniel H. Geschwind
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-019-6035-0

MiR-190a potentially ameliorates postoperative cognitive dysfunction by regulating Tiam1
Cited by: 18
Author(s): Qiang Liu, Aisheng Hou, Yongyi Zhang, Ying Guo, Jingjing Li, Yinghao Yao, Kaimeng Niu, Hao Li, Yunlong Ma, Jiangbei Cao
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-019-5978-5

Long non-coding RNAs and their potential functions in Ligon-lintless-1 mutant cotton during fiber development
Cited by: 16
Author(s): Haron Salih, Wenfang Gong, Shoupu He, Xia Wang, Magwanga Richard Odongo, Xinying Du
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-015-1238-5

Gene coexpression networks reveal key drivers of phenotypic divergence in porcine muscle
Cited by: 10
Author(s): Xiao Ling Zhao, Zhaoyang Liu, Qingxin Liu
Software Mentions: 1
Published: over 10 years ago

10.3389/fcell.2021.656636

LncRNA Landscape of Coronary Atherosclerosis Reveals Differentially Expressed LncRNAs in Proliferation and Migration of Coronary Artery Smooth Muscle Cells
Cited by: 6
Author(s): Yaqing Zhou, Sheng Zhang, Wenfeng Ji, Xiongkang Gan, Hua Liu, Can Hou, Jiaxin Chen, Yanjun Wang, Shu He, Hongliang Zhou, En-Zhi Jia
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2020.630790

Identification of IL10RA by Weighted Correlation Network Analysis and in vitro Validation of Its Association With Prognosis of Metastatic Melanoma
Cited by: 7
Author(s): Siyuan Cheng, Zhe Li, Wenhao Zhang, Zhiqiang Sun, Zhipeng Fan, Judong Luo, Hui Liu
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2020.609832

Identification of LncRNAs Associated With FOLFOX Chemoresistance in mCRC and Construction of a Predictive Model
Cited by: 4
Author(s): Yiyi Zhang, Meifang Xu, Yanwu Sun, Ying Chen, Pan Chi, Zongbin Xu, Xingrong Lu
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-020-07106-8

Transcriptional landscape of the embryonic chicken Müllerian duct
Cited by: 8
Author(s): Zahida Yesmin Roly, Rasoul Godini, Martín Estermann, Andrew T. Major, Roger Pocock, Craig A. Smith
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13073-017-0444-y

brain-coX: investigating and visualising gene co-expression in seven human brain transcriptomic datasets
Cited by: 11
Author(s): Saskia Freytag, Rosemary Burgess, Karen Oliver, Melanie Bahlo
Software Mentions: 1
Published: about 8 years ago

10.1186/s13073-017-0466-5

Parkinson’s disease is associated with DNA methylation levels in human blood and saliva
Cited by: 111
Author(s): Yen Chuang, Kimberly C. Paul, Jeff M. Bronstein, Yvette Bordelon, Steve Horvath, Beate Ritz
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSystems.00499-20

Dietary Intervention Reverses Fatty Liver and Altered Gut Microbiota during Early-Life Undernutrition
Cited by: 3
Author(s): Kylynda C. Bauer, Kelsey E. Huus, Eric Brown, Tahereh Bozorgmehr, Charisse Petersen, Mihai Cirstea, Sarah E. Woodward, John J. McCoy, Jeong Ki Hun, Reinald Pamplona, Victòria Ayala, B. Brett Finlay
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.600344

Up-Regulation of SALL4 Is Associated With Survival and Progression via Putative WNT Pathway in Gastric Cancer
Cited by: 7
Author(s): Yang Yang, Xiaohong Wang, Yiqiang Liu, Hanjie Ying, Zhongwu Li, Ziyu Li, Zhaode Bu, Xiaojiang Wu, Lianhai Zhang, Jiafu Ji
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2020.00252

Integrative Analysis for Elucidating Transcriptomics Landscapes of Glucocorticoid-Induced Osteoporosis
Cited by: 3
Author(s): Xiaoxia Ying, Xiyun Jin, Pingping Wang, Yingkun He, Haomiao Zhang, Xiang Ren, Songling Chai, Wang Fu, Pengcheng Zhao, Chen Chen, Guowu Ma, Huiying Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13073-021-00845-7

Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer
Cited by: 36
Author(s): Hryhorii Chereda, Annalen Bleckmann, Kerstin Menck, Júlia Perera-Bel, Philip Stegmaier, Florian Auer, Frank Krämer, Andreas Leha, Tim Beißbarth
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.734897

Potential Role of S-Palmitoylation in Cancer Stem Cells of Lung Adenocarcinoma
Cited by: 7
Author(s): Yitong Zhang, Fenglan Li, Kexin Fu, Xiqing Liu, I-Chia Lien, Hui Li
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcvm.2014.00011

Dual Linkage of a Locus to Left Ventricular Mass and a Cardiac Gene Co-Expression Network Driven by a Chromosome Domain
Cited by: 2
Author(s): Marie Pier Scott-Boyer, Samantha D. Praktiknjo, Bastien Llamas, Sylvie Picard, Christian F. Deschepper
Software Mentions: 1
Published: over 10 years ago

10.3389/fcvm.2019.00100

Isoproterenol-Induced Cardiac Diastolic Dysfunction in Mice: A Systems Genetics Analysis
Cited by: 14
Author(s): Jessica Wang, Adriana Huertas-Vázquez, Yibin Wang, Aldons J. Lusis
Software Mentions: 1
Published: almost 6 years ago

10.3389/fbioe.2020.00177

Investigation of miRNA and mRNA Co-expression Network in Ependymoma
Cited by: 12
Author(s): Feili Liu, Hang Dong, Zi Mei, Tao Huang
Software Mentions: 1
Published: over 5 years ago

10.1111/acel.13414

Epigenetic clock and methylation studies in elephants
Cited by: 31
Author(s): Natalia A. Prado, Janine L. Brown, Joseph A. Zoller, Amin Haghani, Mingjia Yao, Lora Bagryanova, Michael G. Campana, Jesús E. Maldonado, Kenneth Raj, Dennis L. Schmitt, Todd R. Robeck, Steve Horvath
Software Mentions: 1
Published: about 4 years ago

10.3389/fbioe.2021.651895

Functional Diversity Facilitates Stability Under Environmental Changes in an Outdoor Microalgal Cultivation System
Cited by: 8
Author(s): Lina Mattsson, Eva Sörenson, Eric Capo, Hanna Farnelid, Maurice Hirwa, Martin Olofsson, Fredrik Svensson, Elin Lindehoff, Catherine Legrand
Software Mentions: 1
Published: over 4 years ago

10.1186/s40246-021-00350-3

Identification of subgroups along the glycolysis-cholesterol synthesis axis and the development of an associated prognostic risk model
Cited by: 4
Author(s): Enchong Zhang, Yijing Chen, Shurui Bao, Xueying Hou, Jing Hu, Oscar Yong Nan Mu, Yi Song, Liping Shan
Software Mentions: 1
Published: almost 4 years ago

10.1007/s10585-020-10062-y

Correlation of exosomal microRNA clusters with bone metastasis in non-small cell lung cancer
Cited by: 20
Author(s): Xiaorong Yang, Can Pi, Rong Yu, Xiaojun Fan, Xudong Peng, Xuchao Zhang, Zhihong Chen, Xue Wu, Yang Shao, Yi‐Long Wu, Qing Zhou
Software Mentions: 1
Published: over 4 years ago

10.1186/s13020-020-00344-8

Transcriptome analyses revealed the ultraviolet B irradiation and phytohormone gibberellins coordinately promoted the accumulation of artemisinin in Artemisia annua L.
Cited by: 10
Author(s): Tingyu Ma, Han Gao, Dong Zhang, Yuhua Shi, Tianyuan Zhang, Xiaofeng Shen, Lan Wu, Xiang Li, Shilin Chen
Software Mentions: 1
Published: about 5 years ago

10.1093/gigascience/gix059

The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization
Cited by: 145
Author(s): Xiaodong Du, Guangyi Fan, Yu Jiao, He Zhang, Ximing Guo, Ronglian Huang, Zhe Zheng, Chao Bian, Yuewen Deng, Qingheng Wang, Zhongduo Wang, Xinming Liang, Haiying Liang, Chengcheng Shi, Xiyang Zhao, Fengming Sun, Ruijuan Hao, Jie Bai, Liu Jialiang, Wenbin Chen, Jinlian Liang, Weiqing Liu, Zhe Xu, Qiong Shi, Xun Xu, Guofan Zhang, Xin Liu
Software Mentions: 1
Published: about 8 years ago

10.18632/aging.102971

Prognostic values of immune scores and immune microenvironment-related genes for hepatocellular carcinoma
Cited by: 22
Author(s): Penglei Ge, Shifang Li, Weiwei Wang, Chunbo Li, Yu-Bin Fu, Zhengkai Feng, Lin Li, Gong Zhang, Zhiqiang Gao, Xiaowei Dang, Yang Wu
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9010246

Novel Approaches for Identifying the Molecular Background of Schizophrenia
Cited by: 10
Author(s): Arkadiy K. Golov, Nikolay Kondratyev, G. P. Kostyuk, And Vera E Golimbet
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2019.12.087

Immunological Fingerprints of Controllers Developing Neutralizing HIV-1 Antibodies
Cited by: 19
Author(s): Enrique Martín‐Gayo, Ce Gao, Hsiao Rong Chen, Zhengyu Ouyang, Dhohyung Kim, Kellie E. Kolb, Alex K. Shalek, Bruce D. Walker, Mathias Lichterfeld, Xu G. Yu
Software Mentions: 1
Published: over 5 years ago

10.1111/cpr.12386

Spontaneous generation of a novel foetal human retinal pigment epithelium ( <scp>RPE</scp> ) cell line available for investigation on phagocytosis and morphogenesis
Cited by: 7
Author(s): Zhihua Shao, Haiyun Wang, Xinping Zhou, Baosen Guo, Xuehu Gao, Zengrong Xiao, Liesu Meng, Sha Jihong, Chunlian Jiang, Yuan Luo, Zhixue Liu, Siguang Li
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41421-019-0129-3

Twin-peak temporal regulation during human neocortical development
Cited by: 5
Author(s): Wei Wang, Guang-Zhong Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/cddiscovery.2017.73

Interplay of neuronal and non-neuronal genes regulates intestinal DAF-16-mediated immune response during Fusarium infection of Caenorhabditis elegans
Cited by: 8
Author(s): Papri Nag, Pooja Aggarwal, Sudip Ghosh, Kanika Narula, Rajul Tayal, Nidhi Maheshwari, Niranjan Chakraborty, Subhra Chakraborty
Software Mentions: 1
Published: over 7 years ago

10.1186/s41065-019-0089-5

Identification of the defense-related gene VdWRKY53 from the wild grapevine Vitis davidii using RNA sequencing and ectopic expression analysis in Arabidopsis
Cited by: 10
Author(s): Ying Zhang, Jia‐Long Yao, Hui Feng, Jianfu Jiang, Xiucai Fan, Yunfei Jia, Ran Wang, Chonghuai Liu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-020-03368-y

Oxidative stress activates NORAD expression by H3K27ac and promotes oxaliplatin resistance in gastric cancer by enhancing autophagy flux via targeting the miR-433-3p
Cited by: 39
Author(s): Jizhao Wang, Yehuan Sun, Xing Zhang, Hui Cai, Cheng Zhang, Hangying Qu, Lin Liu, Mingxin Zhang, Junke Fu, Jia Zhang, Jiansheng Wang, Guangjian Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-018-4756-0

Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis
Cited by: 49
Author(s): Wenjing Tao, Jinlin Chen, Dejie Tan, Jing Yang, Lina Sun, Jing Wei, Matthew A. Conte, Thomas D. Kocher, Deshou Wang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41419-019-2043-x

Exploring specific prognostic biomarkers in triple-negative breast cancer
Cited by: 53
Author(s): Chang Bao, Yunkun Lu, Jishun Chen, Danni Chen, Weiyang Lou, Bo Ding, Liang Xu, Weimin Fan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41419-020-03305-z

Weighted gene coexpression network and experimental analyses identify lncRNA SPRR2C as a regulator of the IL-22-stimulated HaCaT cell phenotype through the miR-330/STAT1/S100A7 axis
Cited by: 14
Author(s): Meijunzi Luo, Pan Huang, Yi Pan, Zhu Zhu, Rong Zhou, Zhibo Yang, Chang Wang
Software Mentions: 1
Published: over 4 years ago

10.1186/s40246-016-0071-5

Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia
Cited by: 33
Author(s): Garima Kushwaha, Mikhail G. Dozmorov, Jonathan D. Wren, Jing Qiu, Huidong Shi, Dong Xu
Software Mentions: 1
Published: about 9 years ago

10.1186/s13578-021-00633-1

Multiple responses contribute to the enhanced drought tolerance of the autotetraploid Ziziphus jujuba Mill. var. spinosa
Cited by: 16
Author(s): Meng Li, Chenxing Zhang, Lei Hou, Weicong Yang, Songshan Liu, Xiaoming Pang, Yingyue Li
Software Mentions: 1
Published: about 4 years ago

10.1093/hmg/ddv166

Spatiotemporal dynamics of the postnatal developing primate brain transcriptome
Cited by: 32
Author(s): Trygve E. Bakken, Jeremy A. Miller, Rui Luo, Amy Bernard, Jeffrey Bennett, Chang Kyu Lee, Darren Bertagnolli, Neelroop N. Parikshak, Kimberly A. Smith, Susan M. Sunkin, David G. Amaral, Daniel H. Geschwind, Ed Lein
Software Mentions: 1
Published: about 10 years ago

10.1186/s41065-019-0083-y

Bladder cancer stage-associated hub genes revealed by WGCNA co-expression network analysis
Cited by: 63
Author(s): Yu Di, Dongshan Chen, Wenxia Yu, Lei Yan
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13122990

Transcriptomic and Genetic Associations between Alzheimer’s Disease, Parkinson’s Disease, and Cancer
Cited by: 24
Author(s): Jaume Forés-Martos, César Boullosa, David Rodrigo-Domínguez, Jon Sánchez-Valle, Beatriz Suay-García, Joan Climent, Antonio Falcó, Alfonso Valencia, Joan Antón Puig-Butillé, Susana Puig, Rafael Tabarés‐Seisdedos
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers12082230

Interplay of tRNA-Derived Fragments and T Cell Activation in Breast Cancer Patient Survival
Cited by: 17
Author(s): Nayang Shan, Ningshan Li, Qile Dai, Lin Hou, Xiting Yan, Amei Amei, Lei Lü, Zuoheng Wang
Software Mentions: 1
Published: almost 5 years ago

10.1111/acel.13349

Epigenetic clock and methylation study of oocytes from a bovine model of reproductive aging
Cited by: 19
Author(s): Paweł Kordowitzki, Amin Haghani, Joseph A. Zoller, Caesar Z. Li, Ken Raj, Matthew L Spangler, Steve Horvath
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers11040477

Exosomal miRNAs as Novel Pharmacodynamic Biomarkers for Cancer Chemopreventive Agent Early Stage Treatments in Chemically Induced Mouse Model of Lung Squamous Cell Carcinoma
Cited by: 6
Author(s): Yanzhao Zhou, Ming You, Meijun Du, Donghai Xiong, Yian Wang, Altaf Mohammed, Ronald A. Lubet, Liang Wang, Ming You
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.16703

Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
Cited by: 12
Author(s): Jingxia Lin, Xuefei Li, Fangfei Zhang, Lei Zhu, Yongfeng Chen
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-019-6366-x

Transcriptome sequencing of Saccharina japonica sporophytes during whole developmental periods reveals regulatory networks underlying alginate and mannitol biosynthesis
Cited by: 26
Author(s): Zhanru Shao, Pengyan Zhang, Chao Lu, Shaoxuan Li, Zhihang Chen, Xiuliang Wang, Delin Duan
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers11111688

Secondary Somatic Mutations in G-Protein-Related Pathways and Mutation Signatures in Uveal Melanoma
Cited by: 17
Author(s): Francesca Piaggio, Veronica Tozzo, Cinzia Bernardi, Michela Croce, Roberto Puzone, Silvia Viaggi, Serena Patrone, Annalisa Barla, Domenico Coviello, Martine J. Jager, Pieter A. van der Velden, Michael Zeschnigk, Davide Cangelosi, Alessandra Eva, Ulrich Pfeffer, Adriana Amaro
Software Mentions: 1
Published: over 5 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479