Projects: cran: WGCNA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/WGCNA
Weighted Correlation Network Analysis
52 versions
Latest release: over 3 years ago
20 dependent packages
9,120 downloads last month
Science Score: 85/100
Starting Score: 100 points
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Very Likely Science (85)
Papers Mentioning WGCNA 3,479
10.1371/journal.pone.0100690
Novel Insights into the Regulatory Architecture of CD4+ T Cells in Rheumatoid ArthritisCited by: 21
Author(s): Adrià Aterido, Carlos Palacio, Sara Marsal, G. Ávila, Antonio Julià
Software Mentions: 1
Published: about 12 years ago
10.7150/thno.48064
ROS production and mitochondrial dysfunction driven by PU.1-regulated NOX4-p22<sup>phox</sup> activation in Aβ-induced retinal pigment epithelial cell injuryCited by: 18
Author(s): Junran Sun, Jieqiong Chen, Tong Li, Peng Huang, Jie Li, Mengxi Shen, Min Gao, Yang Sun, Jian Liang, Xiaomeng Li, Yimin Wang, Yushu Xiao, Xiang Shi, Yifan Hu, Jing Feng, Huixun Jia, Te Liu, Xiaodong Sun
Software Mentions: 1
Published: over 6 years ago
10.1002/pld3.70
A sorghum <scp>NAC</scp> gene is associated with variation in biomass properties and yield potentialCited by: 32
Author(s): Jingnu Xia, Yunjun Zhao, Payne S. Burks, Markus Pauly, Patrick J. Brown
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.18646
Identification of two novel biomarkers of rectal carcinoma progression and prognosis via co-expression network analysisCited by: 19
Author(s): Min Sun, Taojiao Sun, Zhong He, Bin Xiong
Software Mentions: 1
Published: about 9 years ago
10.1111/pbi.13325
DcMYB113, a root‐specific R2R3‐MYB, conditions anthocyanin biosynthesis and modification in carrotCited by: 74
Author(s): Zhihong Xu, Qingqing Yang, Kai Feng, Xin Yu, Ai‐Sheng Xiong
Software Mentions: 1
Published: over 6 years ago
10.3390/cancers10090307
A Comprehensive Survey of Immune Cytolytic Activity-Associated Gene Co-Expression Networks across 17 Tumor and Normal Tissue TypesCited by: 4
Author(s): Tian Tian, Ji Wan, Han Yan, Haoran Liu, Feng Gao, Ying Pan, Qi Song, Zhi Wei
Software Mentions: 1
Published: about 8 years ago
10.3390/cancers12071809
Identification of GSN and LAMC2 as Key Prognostic Genes of Bladder Cancer by Integrated Bioinformatics AnalysisCited by: 16
Author(s): Jia-Lian Yang, Charles C.N. Wang, Jia-Hua Cai, Che‐Yi Chou, Yu‐Hsien Lin, Chin‐Chuan Hung
Software Mentions: 1
Published: about 6 years ago
10.3390/cancers11111688
Secondary Somatic Mutations in G-Protein-Related Pathways and Mutation Signatures in Uveal MelanomaCited by: 17
Author(s): Francesca Piaggio, Veronica Tozzo, Cinzia Bernardi, Michela Croce, Roberto Puzone, Silvia Viaggi, Serena Patrone, Annalisa Barla, Domenico Coviello, Martine J. Jager, Pieter A. van der Velden, Michael Zeschnigk, Davide Cangelosi, Alessandra Eva, Ulrich Pfeffer, Adriana Amaro
Software Mentions: 1
Published: almost 7 years ago
10.3390/antiox10091385
Characterization of Heat Shock Protein 60 as an Interacting Partner of Superoxide Dismutase 2 in the Silkworm, Bombyx mori, and Its Response to the Molting Hormone, 20-HydroxyecdysoneCited by: 2
Author(s): Yosui Nojima
Software Mentions: 1
Published: about 5 years ago
10.3390/cancers11040477
Exosomal miRNAs as Novel Pharmacodynamic Biomarkers for Cancer Chemopreventive Agent Early Stage Treatments in Chemically Induced Mouse Model of Lung Squamous Cell CarcinomaCited by: 6
Author(s): Yanzhao Zhou, Ming You, Meijun Du, Donghai Xiong, Yian Wang, Altaf Mohammed, Ronald A. Lubet, Liang Wang, Ming You
Software Mentions: 1
Published: over 7 years ago
10.3390/cancers12082230
Interplay of tRNA-Derived Fragments and T Cell Activation in Breast Cancer Patient SurvivalCited by: 17
Author(s): Nayang Shan, Ningshan Li, Qile Dai, Lin Hou, Xiting Yan, Amei Amei, Lei Lü, Zuoheng Wang
Software Mentions: 1
Published: about 6 years ago
10.3390/cancers13122990
Transcriptomic and Genetic Associations between Alzheimer’s Disease, Parkinson’s Disease, and CancerCited by: 24
Author(s): Jaume Forés-Martos, César Boullosa, David Rodrigo-Domínguez, Jon Sánchez-Valle, Beatriz Suay-García, Joan Climent, Antonio Falcó, Alfonso Valencia, Joan Antón Puig-Butillé, Susana Puig, Rafael Tabarés‐Seisdedos
Software Mentions: 1
Published: about 5 years ago
10.1007/s00425-020-03544-6
Systematic identification and characterization of circular RNAs involved in flag leaf senescence of riceCited by: 15
Author(s): Xiaoping Huang, Hongyu Zhang, Rong Guo, Qiang Wang, Xuanzhi Liu, Weigang Kuang, Haiyan Song, Jiang-Lin Liao, Yongji Huang, Zhaohai Wang
Software Mentions: 1
Published: over 5 years ago
10.14814/phy2.12208
Genetic modulation of diabetic nephropathy among mouse strains with Ins2<i>Akita</i>mutationCited by: 7
Author(s): Xinhui Wu, Richard C. Davis, Timothy S. McMillen, Valérie Schaeffer, Zhiqiang Zhou, Hongxiu Qi, Parisa N. Mazandarani, Roshanak Alialy, Kelly L. Hudkins, Aldons J. Lusis, Renée C. LeBoeuf
Software Mentions: 1
Published: almost 12 years ago
10.1186/s13578-021-00633-1
Multiple responses contribute to the enhanced drought tolerance of the autotetraploid Ziziphus jujuba Mill. var. spinosaCited by: 16
Author(s): Meng Li, Chenxing Zhang, Lei Hou, Weicong Yang, Songshan Liu, Xiaoming Pang, Yingyue Li
Software Mentions: 1
Published: about 5 years ago
10.1038/s41419-020-03305-z
Weighted gene coexpression network and experimental analyses identify lncRNA SPRR2C as a regulator of the IL-22-stimulated HaCaT cell phenotype through the miR-330/STAT1/S100A7 axisCited by: 14
Author(s): Meijunzi Luo, Pan Huang, Yi Pan, Zhu Zhu, Rong Zhou, Zhibo Yang, Chang Wang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41419-019-2043-x
Exploring specific prognostic biomarkers in triple-negative breast cancerCited by: 53
Author(s): Chang Bao, Yunkun Lu, Jishun Chen, Danni Chen, Weiyang Lou, Bo Ding, Liang Xu, Weimin Fan
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41419-020-03368-y
Oxidative stress activates NORAD expression by H3K27ac and promotes oxaliplatin resistance in gastric cancer by enhancing autophagy flux via targeting the miR-433-3pCited by: 39
Author(s): Jizhao Wang, Yehuan Sun, Xing Zhang, Hui Cai, Cheng Zhang, Hangying Qu, Lin Liu, Mingxin Zhang, Junke Fu, Jia Zhang, Jiansheng Wang, Guangjian Zhang
Software Mentions: 1
Published: over 5 years ago
10.1186/s40478-015-0203-5
Induction of a common microglia gene expression signature by aging and neurodegenerative conditions: a co-expression meta-analysisCited by: 436
Author(s): Inge R. Holtman, Divya Raj, Jeremy A. Miller, W. Schaafsma, Zhuoran Yin, Nieske Brouwer, Paul D. Wes, Thomas Møller, Marie Orre, Willem Kamphuis, Elly M. Hol, Erik Boddeke, Bart J. L. Eggen
Software Mentions: 1
Published: over 11 years ago
10.7717/peerj.4107
Constructing a comprehensive gene co-expression based interactome in <i>Bos taurus</i>Cited by: 9
Author(s): Yan Chen, Yining Liu, Min Du, Wengang Zhang, Lei Xu, Xue Gao, Lupei Zhang, Huijiang Gao, Lingyang Xu, Junya Li, Min Zhao
Software Mentions: 1
Published: almost 9 years ago
10.7717/peerj.9773
Significance of hub genes and immune cell infiltration identified by bioinformatics analysis in pelvic organ prolapseCited by: 8
Author(s): Ying Zhao, Zhijun Xia, Te Yu Lin, Yitong Yin
Software Mentions: 1
Published: about 6 years ago
10.1038/tp.2015.118
Increased abundance of translation machinery in stem cell–derived neural progenitor cells from four schizophrenia patientsCited by: 46
Author(s): Aaron Topol, James English, Erin Flaherty, Prashanth Rajarajan, Brigham J. Hartley, Siddharth Gupta, Fiona Desland, Shijia Zhu, Troy Goff, Lawrence Friedman, Judith L. Rapoport, Dan P. Felsenfeld, Gerard Cagney, Alan Mackay‐Sim, Jeffrey N. Savas, Bruce J. Aronow, Gang Fang, B Zhang, David Cotter, Kristen J. Brennand
Software Mentions: 1
Published: almost 11 years ago
10.3390/antibiotics10070861
Crosstalks between NOD1 and Histone H2A Contribute to Host Defense against Streptococcus agalactiae Infection in ZebrafishCited by: 2
Author(s): Xiaoyu Wu, Fan Xiong, Hong Fang, Jie Zhang, Ming Chang
Software Mentions: 1
Published: about 5 years ago
10.1038/cddiscovery.2017.73
Interplay of neuronal and non-neuronal genes regulates intestinal DAF-16-mediated immune response during Fusarium infection of Caenorhabditis elegansCited by: 8
Author(s): Papri Nag, Pooja Aggarwal, Sudip Ghosh, Kanika Narula, Rajul Tayal, Nidhi Maheshwari, Niranjan Chakraborty, Subhra Chakraborty
Software Mentions: 1
Published: almost 9 years ago
10.1093/molbev/msab004
Functional Diversification, Redundancy, and Epistasis among Paralogs of the <i>Drosophila melanogaster Obp50a–d</i> Gene ClusterCited by: 10
Author(s): Joel A. Johnstun, Vijay Shankar, Sneha S Mokashi, Lakshmi T. Sunkara, Ugonna E Ihearahu, Roberta Lyman, Trudy F. C. Mackay, Robert R. H. Anholt
Software Mentions: 1
Published: over 5 years ago
10.1038/s41421-019-0129-3
Twin-peak temporal regulation during human neocortical developmentCited by: 5
Author(s): Wei Wang, Guang-Zhong Wang
Software Mentions: 1
Published: over 6 years ago
10.1186/2040-2392-5-22
DAWN: a framework to identify autism genes and subnetworks using gene expression and geneticsCited by: 111
Author(s): Li Liu, Jing Lei, Stephan Sanders, A. Jeremy Willsey, Yan Kou, A. Ercüment Çiçek, Lambertus Klei, Cong Lu, Xin He, Mingfeng Li, Rebecca Muhle, Avi Ma’ayan, James P. Noonan, Nenad Šestan, Kathryn McFadden, Matthew W. State, Joseph D. Buxbaum, Bernie Devlin, Kathryn Roeder
Software Mentions: 1
Published: over 12 years ago
10.1111/cpr.12386
Spontaneous generation of a novel foetal human retinal pigment epithelium ( <scp>RPE</scp> ) cell line available for investigation on phagocytosis and morphogenesisCited by: 7
Author(s): Zhihua Shao, Haiyun Wang, Xinping Zhou, Baosen Guo, Xuehu Gao, Zengrong Xiao, Liesu Meng, Sha Jihong, Chunlian Jiang, Yuan Luo, Zhixue Liu, Siguang Li
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13229-015-0029-9
Atypical miRNA expression in temporal cortex associated with dysregulation of immune, cell cycle, and other pathways in autism spectrum disordersCited by: 59
Author(s): Bradley P. Ander, Nicole Barger, Boryana Stamova, Frank R. Sharp, Cynthia M. Schumann
Software Mentions: 1
Published: about 11 years ago
10.1186/s13229-020-00382-x
Functional relationships between recessive inherited genes and genes with de novo variants in autism spectrum disorderCited by: 4
Author(s): Lin Wang, Yi Zhang, Kuokuo Li, Zheng Wang, Xiaomeng Wang, Bin Li, Guizhe Zhao, Zhenghuan Fang, Zhengbao Ling, Tengfei Luo, Xia Lu, Yanping Li, Hui Guo, Zhengmao Hu, Jinchen Li, Zhen Sun, Kun Xia
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.celrep.2019.12.087
Immunological Fingerprints of Controllers Developing Neutralizing HIV-1 AntibodiesCited by: 19
Author(s): Enrique Martín‐Gayo, Ce Gao, Hsiao Rong Chen, Zhengyu Ouyang, Dhohyung Kim, Kellie E. Kolb, Alex K. Shalek, Bruce D. Walker, Mathias Lichterfeld, Xu G. Yu
Software Mentions: 1
Published: over 6 years ago
10.3390/microorganisms8040518
iTRAQ-based Quantitative Proteomics Analysis Identifies Host Pathways Modulated during Toxoplasma gondii Infection in SwineCited by: 7
Author(s): Jun-Jun He, Jun Ma, Jin‐Lei Wang, Fu-Kai Zhang, Jiexi Li, Bintao Zhai, Hany M. Elsheikha, Xing‐Quan Zhu
Software Mentions: 1
Published: over 6 years ago
10.3390/microorganisms8060951
Functional Associations and Resilience in Microbial CommunitiesCited by: 11
Author(s): María Luisa Ávila-Jiménez, Gavin Burns, Zhili He, Jizhong Zhou, Andy Hodson, Jose-Luis Avila-Jimenez, David A. Pearce
Software Mentions: 1
Published: about 6 years ago
10.1186/2049-2618-1-17
Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationshipsCited by: 230
Author(s): Ian Howard Mchardy, Maryam Goudarzi, Man‐Li Tong, Paul Ruegger, Emma Schwager, John R. Weger, Thomas G. Graeber, Justin L. Sonnenburg, Steve Horvath, Curtis Huttenhower, Dermot P. McGovern, Albert J. Fornace, James Borneman, Jonathan Braun
Software Mentions: 1
Published: over 13 years ago
10.1186/s12934-020-01349-6
Repeated fed-batch strategy and metabolomic analysis to achieve high docosahexaenoic acid productivity in Crypthecodinium cohniiCited by: 9
Author(s): Liangsen Liu, Fangzhong Wang, Guangsheng Pei, Jinyu Cui, Jinjin Diao, Mingming Lv, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 6 years ago
10.1007/s11306-017-1263-2
Estimation of metabolite networks with regard to a specific covariable: applications to plant and human dataCited by: 9
Author(s): Georgios Bartzis, Joris Deelen, Júlio Maia, Wilco Ligterink, Henk W. M. Hilhorst, Jeanine J. Houwing-Duistermaat, Fred van Eeuwijk, Hae‐Won Uh
Software Mentions: 1
Published: almost 9 years ago
10.1007/s11306-019-1511-8
Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [CO2] and temperatureCited by: 21
Author(s): Jessica M. Wedow, Craig R. Yendrek, Tathyana Rachel Palo Mello, Silvana Creste, Carlos A. Martínez, Elizabeth A. Ainsworth
Software Mentions: 1
Published: over 7 years ago
10.1007/s11306-020-01733-8
Evaluation of the use of untargeted metabolomics in the safety assessment of genetically modified cropsCited by: 17
Author(s): Mohamed Bedair, Kevin C. Glenn
Software Mentions: 1
Published: almost 6 years ago
10.3390/cells9010246
Novel Approaches for Identifying the Molecular Background of SchizophreniaCited by: 10
Author(s): Arkadiy K. Golov, Nikolay Kondratyev, G. P. Kostyuk, And Vera E Golimbet
Software Mentions: 1
Published: over 6 years ago
10.1038/tp.2016.245
Peripheral blood gene expression profiles linked to monoamine metabolite levels in cerebrospinal fluidCited by: 13
Author(s): Jurjen J. Luykx, Loes Olde Loohuis, M Neeleman, Eric Strengman, Steven C. Bakker, Eef G.W.M. Lentjes, Paul Borgdorff, Eric P.A. van Dongen, Peter Bruins, René S. Kahn, Steve Horvath, Simone de Jong, Roel A. Ophoff
Software Mentions: 1
Published: over 9 years ago
10.1186/s13020-020-00344-8
Transcriptome analyses revealed the ultraviolet B irradiation and phytohormone gibberellins coordinately promoted the accumulation of artemisinin in Artemisia annua L.Cited by: 10
Author(s): Tingyu Ma, Han Gao, Dong Zhang, Yuhua Shi, Tianyuan Zhang, Xiaofeng Shen, Lan Wu, Xiang Li, Shilin Chen
Software Mentions: 1
Published: about 6 years ago
10.1038/tp.2016.291
Rare damaging variants in DNA repair and cell cycle pathways are associated with hippocampal and cognitive dysfunction: a combined genetic imaging study in first-episode treatment-naive patients with schizophreniaCited by: 4
Author(s): Zhenxing Yang, M Li, Xun Hu, Bo Xiang, Wei Deng, Q Wang, Y Wang, Liansheng Zhao, Xiaoyan Ma, Pak C. Sham, Georg Northoff, T Li
Software Mentions: 1
Published: over 9 years ago
10.3390/metabo10120511
The Metabolomics of Childhood Atopic Diseases: A Comprehensive Pathway-Specific ReviewCited by: 17
Author(s): M.S. Schjødt, Gözde Gürdeniz, Bo Chawes
Software Mentions: 1
Published: over 5 years ago
10.1007/s10585-020-10062-y
Correlation of exosomal microRNA clusters with bone metastasis in non-small cell lung cancerCited by: 20
Author(s): Xiaorong Yang, Can Pi, Rong Yu, Xiaojun Fan, Xudong Peng, Xuchao Zhang, Zhihong Chen, Xue Wu, Yang Shao, Yi‐Long Wu, Qing Zhou
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13601-020-00332-z
Distinct type 2-high inflammation associated molecular signatures of chronic rhinosinusitis with nasal polyps with comorbid asthmaCited by: 34
Author(s): Ming Wang, Xiangting Bu, Ge Luan, Lishan Lin, Yan Wang, Jianmin Jin, Luo Zhang, Chengshuo Wang
Software Mentions: 1
Published: about 6 years ago
10.3390/metabo9070145
Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS)Cited by: 27
Author(s): Mary C. Playdon, Amit D. Joshi, Fred K. Tabung, Susan Cheng, Mir Henglin, Andy Kim, Tengda Lin, Eline H. van Roekel, Jiaqi Huang, Jan Krumsiek, Ying Wang, Ewy A. Mathé, Marinella Temprosa, Steven C. Moore, Bo Chawes, A. Heather Eliassen, Andrea Gsur, Marc J. Gunter, Sei Harada, Claudia Langenberg, Matej Orešič, Wei Perng, Wei Jie Seow, Oana A. Zeleznik
Software Mentions: 1
Published: about 7 years ago
10.3390/metabo9080157
Bronchoalveolar Lavage Fluid from COPD Patients Reveals More Compounds Associated with Disease than Matched PlasmaCited by: 27
Author(s): Eitan Halper-Stromberg, Lucas A. Gillenwater, Charmion Cruickshank‐Quinn, Wanda K. O’Neal, Nichole Reisdorph, Irina Petrache, Yonghua Zhuang, Wassim W. Labaki, Jeffrey L. Curtis, James M. Wells, Stephen I. Rennard, Katherine Pratte, Prescott G. Woodruff, Kathleen A. Stringer, Katerina Kechris, Russell P. Bowler
Software Mentions: 1
Published: about 7 years ago
10.1002/ctm2.343
Clinical significance and immune landscapes of stemness‐related and immune gene set‐based signature in oral cancerCited by: 12
Author(s): Xian Lin, Xiong-Zhou Zheng, Baichun Yang, Jian Chen, Qin Xu, Qingwen Wang
Software Mentions: 1
Published: over 5 years ago
10.1002/ctm2.330
Forty‐three key gene expressions involved in the effect of indoleamine 2,3‐dioxygenase 1 expression on cancer prognosis may be a potential indoleamine 2,3‐dioxygenase 1 inhibitor biomarkerCited by: 0
Author(s): Weirui Li, Leilei Guo, Zikang Xing, Xin Fang, Heng Liang, Shengnan Zhang, Lei Shi, Chunxiang Kuang, Leming Shi, Yuanting Zheng, Yue‐Qing Hu, Qing Yang
Software Mentions: 1
Published: over 5 years ago
10.1002/ctm2.225
A prognostic stemness biomarker CCDC80 reveals acquired drug resistance and immune infiltration in colorectal cancerCited by: 12
Author(s): Weida Wang, G.X. Wu, Kunhao Bai, Lingling Shu, Peidong Chi, Siyuan He, Xin Huang, Qian-Yi Zhang, Li Liang, Dawei Wang, Yong Dai
Software Mentions: 1
Published: almost 6 years ago
10.1038/s42003-021-02536-w
The genome of the thin-necked bladder worm Taenia hydatigena reveals evolutionary strategies for helminth survivalCited by: 2
Author(s): Shuai Wang, Xiaolin Liu, Zhongli Liu, Yugui Wang, Aijiang Guo, Wanlong Huang, Qianhao Wang, Shaohua Zhang, Guangxi Zhu, Xin Luo, Xing‐Quan Zhu, Xuepeng Cai
Software Mentions: 1
Published: about 5 years ago
10.3390/metabo11030161
Metabolomic Profiling Reveals Sex Specific Associations with Chronic Obstructive Pulmonary Disease and EmphysemaCited by: 14
Author(s): Lucas A. Gillenwater, Katerina Kechris, Katherine Pratte, Nichole Reisdorph, Irina Petrache, Wassim W. Labaki, Wanda K. O’Neal, Jerry A. Krishnan, Victor E. Ortega, Dawn L. DeMeo, Russell P. Bowler
Software Mentions: 1
Published: over 5 years ago
10.4317/medoral.24385
Whole exome sequencing and system biology analysis support the "two-hit" mechanism in the onset of AmeloblastomaCited by: 4
Author(s): Yueqi Shi, Mengyu Li, Yinglan Yu, Yuqiong Zhou, Shaoyi Wang
Software Mentions: 1
Published: over 5 years ago
10.1038/s42003-018-0271-8
Regulation of RNA editing by RNA-binding proteins in human cellsCited by: 89
Author(s): Giovanni Quinones-Valdez, Stephen Tran, Hyun-Ik Jun, Jae Hoon Bahn, Ei-Wen Yang, Lijun Zhan, Anneke Brümmer, Xintao Wei, Eric L. Van Nostrand, Gabriel A. Pratt, G Yeo, Brenton R. Graveley, Xinshu Xiao
Software Mentions: 1
Published: over 7 years ago
10.1038/s42003-021-02421-6
Metabolomic signatures associated with depression and predictors of antidepressant response in humans: A CAN-BIND-1 reportCited by: 11
Author(s): Giorgia Caspani, Gustavo Turecki, Raymond W. Lam, Roumen Milev, Benício N. Frey, Glenda MacQueen, Daniel J. Müller, Susan Rotzinger, Sidney H. Kennedy, Jane A. Foster, Jonathan R. Swann
Software Mentions: 1
Published: about 5 years ago
10.18632/oncotarget.21262
Vemurafenib-resistance via de novo RBM genes mutations and chromosome 5 aberrations is overcome by combined therapy with palbociclib in thyroid carcinoma with BRAFV600ECited by: 38
Author(s): Zeus A. Antonello, Nancy Hsu, Manoj Bhasin, Giovanni Roti, Mukta Joshi, Paul Van Hummelen, Emily Ye, Agnes S. Lo, S. Ananth Karumanchi, Christine R. Bryke, Carmelo Nucera
Software Mentions: 1
Published: almost 9 years ago
10.1097/MD.0000000000009738
Identification of gene expression models for laryngeal squamous cell carcinoma using co-expression network analysisCited by: 9
Author(s): Chao Yang, Shufang Wang, Xiangli Yang, Lin Wang, Lin Niu, Jixiang Liu
Software Mentions: 1
Published: over 8 years ago
10.1007/s00335-016-9656-5
Uncovering the liver’s role in immunity through RNA co-expression networksCited by: 11
Author(s): Kylie K. Harrall, Katerina Kechris, Boris Tabakoff, Paula L. Hoffman, Lisa M. Hines, Hidekazu Tsukamoto, Michal Pravenec, Morton P. Printz, Laura Saba
Software Mentions: 1
Published: about 10 years ago
10.26508/lsa.202101091
Serum proteomics reveals disorder of lipoprotein metabolism in sepsisCited by: 2
Author(s): Xi Liang, Tianzhou Wu, Qi Chen, Jing Jiang, Yongpo Jiang, Yiwen Ruan, Huaping Zhang, Sheng Zhang, Zhang Chao, Peng Chen, Yuhang Lv, Jiaojiao Xin, Dongyan Shi, Xin Chen, Li Jun, Yinghe Xu
Software Mentions: 1
Published: about 5 years ago
10.1155/2021/5584684
RAMRSGL: A Robust Adaptive Multinomial Regression Model for Multicancer ClassificationCited by: 0
Author(s): Lei Wang, Juntao Li, Juanfang Liu, Mingming Chang
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/6651009
Candidate Genes Identified in Systemic Sclerosis-Related Pulmonary Arterial Hypertension Were Associated with Immunity, Inflammation, and CytokinesCited by: 5
Author(s): Zhixiao Xu, Jiaxing Ruan, Lingyun Pan, Chengshui Chen
Software Mentions: 1
Published: over 5 years ago
10.1038/s41398-018-0234-3
Identification and replication of RNA-Seq gene network modules associated with depression severityCited by: 33
Author(s): Trang T. Le, Jonathan Savitz, Hideo Suzuki, Masaya Misaki, T. Kent Teague, Bill C. White, Julie H. Marino, Graham B. Wiley, Patrick M. Gaffney, Wayne C. Drevets, Brett A. McKinney, Jerzy Bodurka
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.19490
Using molecular functional networks to manifest connections between obesity and obesity-related diseasesCited by: 6
Author(s): Jialiang Yang, Jing Qiu, Kejing Wang, Lijuan Zhu, Jingjing Fan, De-Yin Zheng, Xiaodi Meng, Jiasheng Yang, Lihong Peng, Yu Fu, Dahan Zhang, Shouneng Peng, Haiyun Huang, Yi Zhang
Software Mentions: 1
Published: about 9 years ago
10.1155/2021/5533483
Altered Gene Expression in the Testis of Infertile Patients with Nonobstructive AzoospermiaCited by: 3
Author(s): Zhiqiang Wang, Zhongjun Ding, Yan Guan, Chunhui Liu, Linjun Wang, Wen-Sheng Shan, Jie Yang
Software Mentions: 1
Published: about 5 years ago
10.1038/s41398-018-0325-1
Dopamine perturbation of gene co-expression networks reveals differential response in schizophrenia for translational machineryCited by: 7
Author(s): Mark Z. Kos, Jubao Duan, Alan R. Sanders, Lucy Blondell, Eugene Drigalenko, Melanie A. Carless, Pablo V. Gejman, Harald H.H. Göring, Mgs
Software Mentions: 1
Published: over 7 years ago
10.1155/2020/3946913
Metabolic Modulation and Potential Biomarkers of the Prognosis Identification for Severe Aortic Stenosis after TAVR by a Metabolomics StudyCited by: 6
Author(s): Yanbiao Liao, Chang Liu, Tingting Xiong, Mingyue Zhao, Wen Zheng, Yuan Feng, Yijian Li, Yuanweixiang Ou, Zhengang Zhang, Yong Peng, Jiafu Wei, Qiao Li, Wei Meng, Xiaojing Liu, Mao Chen
Software Mentions: 1
Published: almost 6 years ago
10.1007/s12170-012-0280-y
Systems Biology Approaches and Applications in Obesity, Diabetes, and Cardiovascular DiseasesCited by: 47
Author(s): Qingying Meng, Ville-Petteri Mäkinen, Helen Luk, Xia Yang
Software Mentions: 1
Published: almost 14 years ago
10.2174/138920209788921029
One Decade Later: What has Gene Expression Profiling Told us About Neuronal Cell Types, Brain Function and Disease?Cited by: 3
Author(s): Elizabeth Díaz
Software Mentions: 1
Published: about 17 years ago
10.1007/s11897-021-00504-3
Single-Cell RNA Sequencing of the Adult Mammalian Heart—State-of-the-Art and Future PerspectivesCited by: 9
Author(s): Monika M Gladka
Software Mentions: 1
Published: over 5 years ago
10.1093/dnares/dsu024
Associative Transcriptomics Study Dissects the Genetic Architecture of Seed Glucosinolate Content in Brassica napusCited by: 60
Author(s): Guangyuan Lu, Andrea L. Harper, Martin Trick, Colin Morgan, F C Fråser, Carmel M. O’Neill, Ian Bancroft
Software Mentions: 1
Published: about 12 years ago
10.1093/dnares/dsz016
Phased genome sequence of an interspecific hybrid flowering cherry, ‘Somei-Yoshino’ (Cerasus × yedoensis)Cited by: 44
Author(s): Kenta Shirasawa, Tomoya Esumi, Hideki Hirakawa, Hideyuki Tanaka, Akihiro Itai, Andrea Ghelfi, Hideki Nagasaki, Sachiko Isobe
Software Mentions: 1
Published: about 7 years ago
10.1093/dnares/dsaa006
Integrating transcriptome and metabolome reveals molecular networks involved in genetic and environmental variation in tobaccoCited by: 20
Author(s): Pingping Li, Jianxun Luo, Qingyuan Zheng, Qiansi Chen, Zheyu Niu, Shengchun Xu, Yalong Xu, Lifeng Jin, Guoyun Xu, Xin Lü, Guowang Xu, Gangjun Wang, Jianfeng Shao, Haiming Xu, Peijian Cao, Huina Zhou, Xusheng Wang
Software Mentions: 1
Published: over 6 years ago
10.3390/ani11061745
Gene Expression Profile and Co-Expression Network of Pearl Gentian Grouper under Cold Stress by Integrating Illumina and PacBio SequencesCited by: 10
Author(s): Ben‐Ben Miao, Su‐Fang Niu, Renxie Wu, Zhen‐Bang Liang, Tang Baogui, Yun Zhai, Xue-Qi Xu
Software Mentions: 1
Published: about 5 years ago
10.1186/s40170-016-0143-y
Integration of omics: more than the sum of its partsCited by: 84
Author(s): Joerg M. Buescher, Edward M. Driggers
Software Mentions: 1
Published: over 10 years ago
10.1002/cam4.3240
Development and validation of an immune‐related prognostic signature in lung adenocarcinomaCited by: 69
Author(s): Sijin Sun, Wei Guo, Zhen Wang, Xin Wang, Guochao Zhang, Hao Zhang, Renda Li, Yibo Gao, Bin Qiu, Fengwei Tan, Yushun Gao, Qi Xue, Shugeng Gao, Jie He
Software Mentions: 1
Published: about 6 years ago
10.1007/s00125-018-4708-x
Innate immune activity as a predictor of persistent insulin secretion and association with responsiveness to CTLA4-Ig treatment in recent-onset type 1 diabetesCited by: 30
Author(s): Susanne M. Cabrera, Samuel Engle, Mary L. Kaldunski, Jia Song, Rhonda Geoffrey, Pippa Simpson, Anikó Szabó, Cate Speake, Carla J. Greenbaum, Yi-Guang Chen, Martin J. Hessner
Software Mentions: 1
Published: about 8 years ago
10.1002/cam4.3369
Microarray profiling of differentially expressed lncRNAs and mRNAs in lung adenocarcinomas and bioinformatics analysisCited by: 12
Author(s): Fei He, Liping Huang, Qiuping Xu, Weimin Xiong, Shuang Liu, Huimin Yang, Wenzhou Lu, Rendong Xiao, Zhijian Hu, Lin Cai
Software Mentions: 1
Published: about 6 years ago
10.1186/s12935-021-01880-5
Silencing SHMT2 inhibits the progression of tongue squamous cell carcinoma through cell cycle regulationCited by: 12
Author(s): Yan Liao, Fang Wang, Yadong Zhang, Hao Cai, Song Fan, Jinsong Hou
Software Mentions: 1
Published: over 5 years ago