cran: WGCNA | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2021.730300

Integration of Molecular Inflammatory Interactome Analyses Reveals Dynamics of Circulating Cytokines and Extracellular Vesicle Long Non-Coding RNAs and mRNAs in Heroin Addicts During Acute and Protracted Withdrawal
Cited by: 7
Author(s): Zunyue Zhang, Hongjin Wu, Qingyan Peng, Zhenrong Xie, Fengrong Chen, Yuru Ma, Yizhi Zhang, Yong Zhou, Jun Yang, Cheng Chen, Shaoyou Li, Yongjin Zhang, Wen Tian, Yuan Wang, Yu Xu, Huayou Luo, Mei Zhu, Yi‐Qun Kuang, Juehua Yu, Kunhua Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12983-019-0336-7

Gene expression vs. sequence divergence: comparative transcriptome sequencing among natural Rhinolophus ferrumequinum populations with different acoustic phenotypes
Cited by: 12
Author(s): Hanbo Zhao, Hui Wang, Tong Liu, Sen Liu, Longru Jin, Xiaobin Huang, Wentao Dai, Keping Sun, Jiang Feng
Software Mentions: 1
Published: about 7 years ago

10.3389/fpsyt.2021.581093

Gene Expression Differences Between Young Adults Based on Trauma History and Post-traumatic Stress Disorder
Cited by: 0
Author(s): Kaitlin Bountress, Vladimir I. Vladimirov, Gowon O. McMichael, Zachary N. Taylor, Gary Hardiman, Dongjun Chung, Zachary W. Adams, Carla Kmett Danielson, Ananda B. Amstadter
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21196994

Transcriptome Sequencing Revealed an Inhibitory Mechanism of Aspergillus flavus Asexual Development and Aflatoxin Metabolism by Soy-Fermenting Non-Aflatoxigenic Aspergillus
Cited by: 9
Author(s): Ke Yang, Qingru Geng, Fengqin Song, Xiaona He, Tianran Hu, Shihua Wang, Jun Tian
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0082656

Neurobiological Signatures of Alcohol Dependence Revealed by Protein Profiling
Cited by: 29
Author(s): Giorgio Gorini, Amanda J. Roberts, R. Dayne Mayfield
Software Mentions: 1
Published: almost 13 years ago

10.3389/fimmu.2020.00616

A Signaling Pathway to Mediate the Combined Immunomodulation of Acetylcholine and Enkephalin in Oyster Crassostrea gigas
Cited by: 3
Author(s): Zhaoqun Liu, Zhi Zhou, Lingling Wang, Yukun Zhang, Yanan Zong, Yan Zheng, Meijia Li, Weilin Wang, Linsheng Song
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0092395

Cancer-Risk Module Identification and Module-Based Disease Risk Evaluation: A Case Study on Lung Cancer
Cited by: 7
Author(s): Jian Xu, Zhengqiang Miao, Li Wan, Liangcai Zhang, Chenchen Feng, Yuehan He, Xiaoman Bi, Liqiang Wang, Ye Du, Min Hou, Dapeng Hao, Yun Xiao, Lina Chen, Kongning Li
Software Mentions: 1
Published: over 12 years ago

10.3389/fpsyt.2020.580307

A Weighted Gene Co-expression Network Analysis Reveals lncRNA Abnormalities in the Peripheral Blood Associated With Ultra-High-Risk for Psychosis
Cited by: 2
Author(s): Yan Ren, Wei Li, Sha Li, Zhi Li, Jiaying Wang, Hong Yang, Yong Xu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpsyt.2020.543893

Non-Coding RNAs in Psychiatric Disorders and Suicidal Behavior
Cited by: 38
Author(s): Yuta Yoshino, Yogesh K. Dwivedi
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0190110

A complex network approach reveals a pivotal substructure of genes linked to schizophrenia
Cited by: 22
Author(s): A. Monaco, Anna Monda, Nicola Amoroso, Alessandro Bertolino, Giuseppe Blasi, Pasquale Di Carlo, Marco Papalino, Giulio Pergola, Sabina Tangaro, R. Bellotti
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0123678

Identification of Common Regulators of Genes in Co-Expression Networks Affecting Muscle and Meat Properties
Cited by: 23
Author(s): Siriluck Ponsuksili, Puntita Siengdee, Yang Du, Nares Trakooljul, Eduard Muráni, Manfred Schwerin, Klaus Wimmers
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms19123829

Childhood-Onset Schizophrenia: Insights from Induced Pluripotent Stem Cells
Cited by: 22
Author(s): Anke Hoffmann, Michael J. Ziller, Dietmar Spengler
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2020.00981

Identification of KIAA0513 and Other Hub Genes Associated With Alzheimer Disease Using Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Min Zhu, Longfei Jia, Fangyu Li, Jianping Jia
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0218528

Distinct leaf transcriptomic response of water deficient Eucalyptus grandis submitted to potassium and sodium fertilization
Cited by: 13
Author(s): Bénédicte Favreau, Marie Denis, Raphaël Ployet, Fabien Mounet, Hana Peireira da Silva, Lívia Maria Franceschini, Jean‐Paul Laclau, Carlos Alberto Labate, Helaine Carrer
Software Mentions: 1
Published: over 7 years ago

10.1007/s13238-016-0247-8

Coupled electrophysiological recording and single cell transcriptome analyses revealed molecular mechanisms underlying neuronal maturation
Cited by: 34
Author(s): Xiaoying Chen, Kunshan Zhang, Libing Zhou, Xinpei Gao, Junbang Wang, Yinan Yao, Fei He, Yuan Luo, Yongchun Yu, Siguang Li, Liming Cheng, Yi Sun
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms20010178

Polybenzyl Glutamate Biocompatible Scaffold Promotes the Efficiency of Retinal Differentiation toward Retinal Ganglion Cell Lineage from Human-Induced Pluripotent Stem Cells
Cited by: 19
Author(s): Ta-Ching Chen, Pin-Yi She, Dong Feng Chen, Rita Jui-Hsien Lu, Chang-Hao Yang, Ding-Siang Huang, Pao‐Yang Chen, Chenyu Lu, Kin‐Sang Cho, Shee–Uan Chen, Wei‐Fang Su
Software Mentions: 1
Published: over 7 years ago

10.1007/s13238-018-0559-y

Unbiased transcriptomic analyses reveal distinct effects of immune deficiency in CNS function with and without injury
Cited by: 9
Author(s): Dandan Luo, Weihong Ge, Xiao Hu, Chen Li, Chia Ming Lee, Libing Zhou, Zhourui Wu, Juehua Yu, Shaochong Lin, Jing Yu, Wei Xu, Lei Chen, Chong Zhang, Kun Jiang, Xuding Zhu, Haotian Li, Xinpei Gao, Yanan Geng, Bo Jing, Zhen Wang, Changhong Zheng, Rongrong Zhu, Yan Qiao, Qing Lin, Keqiang Ye, Yi Sun, Liming Cheng
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-015-0383-6

Berberine ameliorates nonalcoholic fatty liver disease by a global modulation of hepatic mRNA and lncRNA expression profiles
Cited by: 86
Author(s): Xinlu Yuan, Jie Wang, Xiaoyan Tang, Yixue Li, Pu Xia, Xin Gao
Software Mentions: 1
Published: over 11 years ago

10.3389/fpsyt.2019.00706

Integrated Analysis of Brain Transcriptome Reveals Convergent Molecular Pathways in Autism Spectrum Disorder
Cited by: 12
Author(s): Xiaodan Li, Yuncong Zhang, Luxi Wang, Yunqing Lin, Zhaomin Gao, Xiaolei Zhan, Yan Huang, Chongde Sun, Dong Wang, Shuang Liang, Lijie Wu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcvm.2014.00011

Dual Linkage of a Locus to Left Ventricular Mass and a Cardiac Gene Co-Expression Network Driven by a Chromosome Domain
Cited by: 2
Author(s): Marie Pier Scott-Boyer, Samantha D. Praktiknjo, Bastien Llamas, Sylvie Picard, Christian F. Deschepper
Software Mentions: 1
Published: almost 12 years ago

10.1136/rmdopen-2015-000183

Leucocyte subset-specific type 1 interferon signatures in SLE and other immune-mediated diseases
Cited by: 25
Author(s): Shaun Flint, Vojislav Jovanović, Boon Wee Teo, Anselm Mak, Julian Thumboo, Eoín McKinney, James C. Lee, Paul A. MacAry, David M. Kemeny, David Jayne, Kok Yong Fong, Paul Lyons, Kenneth G. C. Smith
Software Mentions: 1
Published: over 10 years ago

10.1098/rsos.172062

Transcriptional analyses provide new insight into the late-stage immune response of a diseased Caribbean coral
Cited by: 28
Author(s): Lauren E. Fuess, Whitney T. Mann, Lea R. Jinks, Vanessa Brinkhuis, Laura D. Mydlarz
Software Mentions: 1
Published: over 8 years ago

10.3389/fcell.2020.592616

Functional Gene Expression Differentiation of the Notch Signaling Pathway in Female Reproductive Tract Tissues—A Comprehensive Review With Analysis
Cited by: 9
Author(s): Magdalena Orzechowska, Dorota Anusewicz, Andrzej K. Bednarek
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2020.01194

Expression of S100A Alarmins in Cord Blood Monocytes Is Highly Associated With Chorioamnionitis and Fetal Inflammation in Preterm Infants
Cited by: 12
Author(s): Veronika Golubinskaya, Henri Puttonen, Ing‐Marie Fyhr, Halfdan Rydbeck, Ann Hellström, Bo Jacobsson, Holger Nilsson, Carina Mallard, Karin Sävman
Software Mentions: 1
Published: over 6 years ago

10.1016/j.redox.2021.101933

Network analysis of nitrate-sensitive oral microbiome reveals interactions with cognitive function and cardiovascular health across dietary interventions
Cited by: 20
Author(s): Anni Vanhatalo, Joanna E. L’Heureux, James Kelly, Jamie R. Blackwell, Lee J. Wylie, Jonathan Fulford, Paul G. Winyard, David Wynne Williams, Mark van der Giezen, Andrew M. Jones
Software Mentions: 1
Published: over 5 years ago

10.1186/s12958-021-00785-2

Abnormally increased DNA methylation in chorionic tissue might play an important role in development of ectopic pregnancy
Cited by: 1
Author(s): Chen Wen, Yang Liu, Ruiqing Zhang, Yang Yao, Shuangdi Li, Jiarong Zhang
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21051675

Genetic Identification and Transcriptome Analysis of Lintless and Fuzzless Traits in Gossypium arboreum L.
Cited by: 18
Author(s): Xueying Liu, Philippe Moncuquet, Qian Zhu, Warwick N. Stiller, Zhengsheng Zhang, Iain W. Wilson
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20092356

Transcriptomic Analysis Reveals a Comprehensive Calcium- and Phytohormone-Dominated Signaling Response in Leymus chinensis Self-Incompatibility
Cited by: 12
Author(s): Shuangyan Chen, Junjie Jia, Long Cheng, Pincang Zhao, Dongmei Qi, Weiguang Yang, Hui Liu, Xiao Dong, Xiaoxia Li, Gongshe Liu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12931-017-0558-1

Network-based analysis reveals novel gene signatures in peripheral blood of patients with chronic obstructive pulmonary disease
Cited by: 31
Author(s): Ma’en Obeidat, Yunlong Nie, Virginia Chen, Casey P. Shannon, Anand Kumar Andiappan, Bernett Lee, Olaf Rötzschke, Peter J. Castaldi, Craig P. Hersh, Nick Fishbane, Raymond T. Ng, Bruce M. McManus, Bruce E. Miller, Stephen I. Rennard, Peter D. Paré, Don D. Sin
Software Mentions: 1
Published: over 9 years ago

10.1186/s12931-018-0965-y

Do sputum or circulating blood samples reflect the pulmonary transcriptomic differences of COPD patients? A multi-tissue transcriptomic network META-analysis
Cited by: 8
Author(s): Rosa Faner, Jarrett Morrow, Sandra Casas-Recasens, Suzanne M. Cloonan, Guillaume Noell, Alejandra López-Giraldo, Ruth Tal‐Singer, Bruce E. Miller, Edwin K. Silverman, Àlvar Agustí, Craig P. Hersh
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2017.00398

Spatiotemporal Transcriptome Analysis Provides Insights into Bicolor Tepal Development in Lilium “Tiny Padhye”
Cited by: 39
Author(s): Liang Xu, Panpan Yang, Yue Feng, Hua Xu, Yuwei Cao, Yuchao Tang, Suxia Yuan, Xinyan Li, Jun Ming
Software Mentions: 1
Published: over 9 years ago

10.1186/s12931-019-1105-z

Multi-level immune response network in mild-moderate Chronic Obstructive Pulmonary Disease (COPD)
Cited by: 33
Author(s): Tamara Cruz, Alejandra López-Giraldo, Guillaume Noell, Sandra Casas-Recasens, Tamara García, Laureano Molins, Manel Juan, Marco A. Fernández, Àlvar Agustí, Rosa Faner
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0100204

Whole Brain Expression of Bipolar Disorder Associated Genes: Structural and Genetic Analyses
Cited by: 23
Author(s): Michael J. McCarthy, Sheng-Fu Liang, Andrea D. Spadoni, John R. Kelsoe, Alan N. Simmons
Software Mentions: 1
Published: over 12 years ago

10.1186/s12986-021-00555-2

Weighted gene co-expression network analysis to identify key modules and hub genes related to hyperlipidaemia
Cited by: 3
Author(s): Fu Jun Liao, Peng-Fei Zheng, Yao-Zong Guan, Hong Pan, Li Wei
Software Mentions: 1
Published: over 5 years ago

10.1186/s12284-020-00437-w

Long Non-coding RNAs Responsive to Blast Fungus Infection in Rice
Cited by: 16
Author(s): Lanlan Wang, Jingjing Jin, Lihua Li, Shaohong Qu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12284-020-00439-8

Weighted Gene Co-Expression Network Coupled with a Critical-Time-Point Analysis during Pathogenesis for Predicting the Molecular Mechanism Underlying Blast Resistance in Rice
Cited by: 2
Author(s): Dagang Tian, Zaijie Chen, Yan Lin, Ziqiang Chen, Zonghua Wang, Wang Feng
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2018.01155

Shedding Light on Chemically Mediated Tri-Trophic Interactions: A 1H-NMR Network Approach to Identify Compound Structural Features and Associated Biological Activity
Cited by: 10
Author(s): Lora A. Richards, Celso José Bruno de Oliveira, Lee A. Dyer, Arran Rumbaugh, Federico Urbano-Muñoz, Ian S. Wallace, Craig D. Dodson, Christopher S. Jeffrey
Software Mentions: 1
Published: about 8 years ago

10.3390/nu11061265

Network Analysis of the Potential Role of DNA Methylation in the Relationship between Plasma Carotenoids and Lipid Profile
Cited by: 18
Author(s): Bénédicte L. Tremblay, Frédéric Guénard, Benoı̂t Lamarche, Louis Pérusse, Marie‐Claude Vohl
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0167543

The rs3957357C>T SNP in GSTA1 Is Associated with a Higher Risk of Occurrence of Hepatocellular Carcinoma in European Individuals
Cited by: 19
Author(s): Hanane Akhdar, Said El Shamieh, Orlando Musso, Romain Désert, Wissam H. Joumaa, Dominique Guyader, Caroline Aninat, Anne Corlu, Franck Morel
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0150624

A Systematic Investigation into Aging Related Genes in Brain and Their Relationship with Alzheimer’s Disease
Cited by: 25
Author(s): Guofeng Meng, Xiaoyan Zhong, Hongkang Mei
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0132542

Transcriptome Profiling of Peripheral Blood in 22q11.2 Deletion Syndrome Reveals Functional Pathways Related to Psychosis and Autism Spectrum Disorder
Cited by: 39
Author(s): Maria Jalbrzikowski, María Teresa Lázaro, Fuying Gao, Alden Huang, Carolyn Chow, Daniel H. Geschwind, Giovanni Coppola, Carrie E. Bearden
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms20163846

Gene Modules Co-regulated with Biosynthetic Gene Clusters for Allelopathy between Rice and Barnyardgrass
Cited by: 7
Author(s): Most. Humaira Sultana, FangJie Liu, Md. Alamin, Limin Mao, Jia Lu, Hongyu Chen, Dongya Wu, Yingying Wang, Fei Fu, Sanling Wu, Weidi Wang, Chu-Yu Ye, Qian Zhu, Jie Qiu, Longjiang Fan
Software Mentions: 1
Published: about 7 years ago

10.3389/fcell.2019.00200

The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections
Cited by: 18
Author(s): Hugh D. Mitchell, Amie J. Eisfeld, Kelly G. Stratton, Natalie C. Heller, Lisa Bramer, Ji Wen, Jason McDermott, Lisa E. Gralinski, Amy C. Sims, Mai Quynh Le, Ralph S. Baric, Yoshihiro Kawaoka, Katrina M. Waters
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0149758

Different Statistical Approaches to Investigate Porcine Muscle Metabolome Profiles to Highlight New Biomarkers for Pork Quality Assessment
Cited by: 19
Author(s): Julia Welzenbach, Christiane Neuhoff, Christian Looft, K. Schellander, Ernst Tholen, Christine Große‐Brinkhaus
Software Mentions: 1
Published: over 10 years ago

10.1038/s41597-021-00828-8

Nelumbo genome database, an integrative resource for gene expression and variants of Nelumbo nucifera
Cited by: 22
Author(s): Hui Li, Xingyu Yang, Yue Zhang, Zhiyan Gao, Yuting Liang, Jin‐Ming Chen, Tao Shi
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.653528

Comprehensive Analysis Reveals the Potential Regulatory Mechanism Between Ub–Proteasome System and Cell Cycle in Colorectal Cancer
Cited by: 1
Author(s): Zhiyuan Zhang, Jingwen Chen, Wentao Tang, Qi Sheng Feng, Jiacheng Xu, Ren Li
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20184358

Global Transcriptome and Co-Expression Network Analysis Reveal Contrasting Response of Japonica and Indica Rice Cultivar to γ Radiation
Cited by: 5
Author(s): Xiaoxiang Zhang, Niansheng Huang, Lanjing Mo, Minjia Lv, Yujiao Gao, Junpeng Wang, Chang Liu, Yin Su, Juan Zhou, Ning Xiao, Cunhong Pan, Yabin Xu, Guichun Dong, Zefeng Yang, Aihong Li, Jianye Huang, Yulong Wang, Youli Yao
Software Mentions: 1
Published: about 7 years ago

10.1038/srep12298

Network analysis of immunotherapy-induced regressing tumours identifies novel synergistic drug combinations
Cited by: 55
Author(s): W. Joost Lesterhuis, Catherine Rinaldi, Anya C. Jones, Esdy N. Rozali, Ian M. Dick, Andrea Khong, Louis Boon, Bruce Robinson, Anna K. Nowak, Anthony Bosco, Richard Lake
Software Mentions: 1
Published: about 11 years ago

10.1186/s12967-021-02879-2

METTL13 inhibits progression of clear cell renal cell carcinoma with repression on PI3K/AKT/mTOR/HIF-1α pathway and c-Myc expression
Cited by: 13
Author(s): Zhuonan Liu, Tianshui Sun, Chiyuan Piao, Zhe Zhang, Chuize Kong
Software Mentions: 1
Published: over 5 years ago

10.1038/srep13248

Derivation of a fifteen gene prognostic panel for six cancers
Cited by: 22
Author(s): Mamata F. Khirade, Girdhari Lal, Sharmila A. Bapat
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms20194781

The Need for Multi-Omics Biomarker Signatures in Precision Medicine
Cited by: 242
Author(s): Michael Olivier, Reto Asmis, Gregory A. Hawkins, Timothy D. Howard, Laura A. Cox
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.679629

Transcriptome Analysis of Resistance to Fusarium Wilt in Mung Bean (Vigna radiata L.)
Cited by: 6
Author(s): Yuan‐Jen Chang, Feifei Sun, Shufeng Sun, Lanfen Wang, Jing Wu, Zhendong Zhu
Software Mentions: 1
Published: over 5 years ago

10.1038/srep17494

Honey bee microRNAs respond to infection by the microsporidian parasite Nosema ceranae
Cited by: 15
Author(s): Qiang Huang, Yanping Chen, Rui Wu Wang, Ryan S. Schwarz, Jay D. Evans
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep18045

Proteome Analysis of Renoprotection Mediated by a Novel Cyclic Helix B Peptide in Acute Kidney Injury
Cited by: 18
Author(s): Cheng Yang, Junjun Liu, Li Long, Man Hu, Ya‐Qiu Long, Xiaohui Liu, Tongyu Zhu, Xiao Huang, Shouliang Zhao, Shangfeng Liu, Ruiming Rong
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep19430

DNA co-methylation modules in postmortem prefrontal cortex tissues of European Australians with alcohol use disorders
Cited by: 66
Author(s): Fan Wang, Hao Xu, Hongyu Zhao, Joel Gelernter, Huiping Zhang
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2016.00497

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System
Cited by: 67
Author(s): Collin M. Timm, Dale A. Pelletier, Sara Jawdy, Lee E. Gunter, Jeremiah A. Henning, Nancy L. Engle, Jayde A. Aufrecht, Emily Gee, Intawat Nookaew, Zamin K. Yang, Tse Yuan S Lu, Timothy J. Tschaplinski, Mitchel J. Doktycz, Gerald A. Tuskan, David J. Weston
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2020.00378

Coexpression Analysis Reveals Dynamic Modules Regulating the Growth and Development of Cirri in the Rattans (Calamus simplicifolius and Daemonorops jenkinsiana)
Cited by: 4
Author(s): Jiongliang Wang, Xuelian Ma, Jiaotong Yang, Yanan Hui, Jiajie She, Tian Tian, Zhongqiu Li, Wenying Xu, Zhimin Gao, Zhen Su, Hansheng Zhao
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.656636

LncRNA Landscape of Coronary Atherosclerosis Reveals Differentially Expressed LncRNAs in Proliferation and Migration of Coronary Artery Smooth Muscle Cells
Cited by: 6
Author(s): Yaqing Zhou, Sheng Zhang, Wenfeng Ji, Xiongkang Gan, Hua Liu, Can Hou, Jiaxin Chen, Yanjun Wang, Shu He, Hongliang Zhou, En-Zhi Jia
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.739514

Circulating Metabolomic Signature in Generalized Pustular Psoriasis Blunts Monocyte Hyperinflammation by Triggering Amino Acid Response
Cited by: 7
Author(s): Na Yu, Peng Chen, Wenjuan Chen, Zengqi Sun, Jianfeng Zheng, Shujie Zhang, Yangfeng Ding, Yujun Shi
Software Mentions: 1
Published: about 5 years ago

10.1038/srep25261

Elucidation of molecular and functional heterogeneity through differential expression network analyses of discrete tumor subsets
Cited by: 6
Author(s): Rutika R. Naik, Nilesh Gardi, Sharmila A. Bapat
Software Mentions: 1
Published: over 10 years ago

10.1038/srep26396

The simple neuroendocrine-immune regulatory network in oyster Crassostrea gigas mediates complex functions
Cited by: 38
Author(s): Zhaoqun Liu, Lingling Wang, Zhi Zhou, Ying Sun, Mengqiang Wang, Hao Wang, Zujun Hou, Dahai Gao, Qiang Gao, Linsheng Song
Software Mentions: 1
Published: over 10 years ago

10.3389/fcell.2021.734897

Potential Role of S-Palmitoylation in Cancer Stem Cells of Lung Adenocarcinoma
Cited by: 7
Author(s): Yitong Zhang, Fenglan Li, Kexin Fu, Xiqing Liu, I-Chia Lien, Hui Li
Software Mentions: 1
Published: about 5 years ago

10.1038/srep28422

Construction and application of a co-expression network in Mycobacterium tuberculosis
Cited by: 31
Author(s): Jun Jiang, Xian Sun, Wei Wu, Li Li, Hai Wu, Lu Zhang, Guohua Yu, Yao Li
Software Mentions: 1
Published: over 10 years ago

10.3389/fimmu.2019.00402

Transcriptional Analysis of the Human IgE-Expressing Plasma Cell Differentiation Pathway
Cited by: 10
Author(s): Faruk Ramadani, H. J. M. Bowen, Hannah Gould, David Fear
Software Mentions: 1
Published: over 7 years ago

10.1038/srep29052

Integrative Network-based Analysis of Magnetic Resonance Spectroscopy and Genome Wide Expression in Glioblastoma multiforme
Cited by: 19
Author(s): Dieter Henrik Heiland, Irina Mader, Pascal Schlosser, Dietmar Pfeifer, Maria Stella Carro, Thomas Lange, Ralf Schwarzwald, Ioannis Vasilikos, Horst Urbach, Astrid Weyerbrock
Software Mentions: 1
Published: over 10 years ago

10.1038/srep28663

Indexing Effects of Copy Number Variation on Genes Involved in Developmental Delay
Cited by: 35
Author(s): Mohammed Uddin, Giovanna Pellecchia, Bhooma Thiruvahindrapuram, Lia D’Abate, Daniele Merico, Ada J.S. Chan, Mehdi Zarrei, Kristiina Tammimies, Susan Walker, Matthew J. Gazzellone, Thomas Nalpathamkalam, Ryan K. C. Yuen, Koenraad Devriendt, Géraldine Mathonnet, Emmanuelle Lemyre, Sonia Nizard, Mary Shago, Ann M. Joseph-George, Abdul Noor, Melissa T. Carter, Grace Yoon, Peter Kannu, Frédérique Tihy, Erik C. Thorland, Christian R. Marshall, Janet A. Buchanan, Marsha Speevak, Dimitri J. Stavropoulos, Stephen W. Scherer
Software Mentions: 1
Published: about 10 years ago

10.3389/fgene.2021.615284

Comparative Analyses of Full-Length Transcriptomes Reveal Gnetum luofuense Stem Developmental Dynamics
Cited by: 7
Author(s): Chen Hou, Huiming Lian, Yanling Cai, Yingli Wang, Dongcheng Liang, Boxiang He
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0061505

When Is Hub Gene Selection Better than Standard Meta-Analysis?
Cited by: 229
Author(s): Peter Langfelder, Paul S. Mischel, Steve Horvath
Software Mentions: 1
Published: over 13 years ago

10.3389/fpls.2020.01256

Transcriptome and Flavonoids Metabolomic Analysis Identifies Regulatory Networks and Hub Genes in Black and White Fruits of Lycium ruthenicum Murray
Cited by: 16
Author(s): Tingting Li, Yunfang Fan, Huan Qin, Guoli Dai, Guo‐Xiu Li, Yanlong Li, Jingjin Wang, Yue Yin, Fang Chen, Xiaoya Qin, Yang Cao, Lin Tang
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2020.00252

Integrative Analysis for Elucidating Transcriptomics Landscapes of Glucocorticoid-Induced Osteoporosis
Cited by: 3
Author(s): Xiaoxia Ying, Xiyun Jin, Pingping Wang, Yingkun He, Haomiao Zhang, Xiang Ren, Songling Chai, Wang Fu, Pengcheng Zhao, Chen Chen, Guowu Ma, Huiying Liu
Software Mentions: 1
Published: over 6 years ago

10.1038/srep31851

Single-cell RNA-seq reveals distinct injury responses in different types of DRG sensory neurons
Cited by: 109
Author(s): Ganlu Hu, Kevin Huang, Youjin Hu, Guizhen Du, Zhigang Xue, Xianmin Zhu, Guoping Fan
Software Mentions: 1
Published: about 10 years ago

10.1038/srep32005

Integrative effect of drought and low temperature on litchi (Litchi chinensis Sonn.) floral initiation revealed by dynamic genome-wide transcriptome analysis
Cited by: 24
Author(s): Jiyuan Shen, Qiusheng Xiao, Haiji Qiu, Chengjie Chen, Houbin Chen
Software Mentions: 1
Published: about 10 years ago

10.1038/srep33227

Network Analysis of Fine Particulate Matter (PM2.5) Emissions in China
Cited by: 12
Author(s): Shaomin Yan, Guang Wu
Software Mentions: 1
Published: about 10 years ago

10.1038/srep33655

Drought response transcriptomes are altered in poplar with reduced tonoplast sucrose transporter expression
Cited by: 24
Author(s): Liang‐Jiao Xue, Christopher J. Frost, Chung‐Jui Tsai, Chung‐Jui Tsai
Software Mentions: 1
Published: about 10 years ago

10.3389/fpls.2020.00224

Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses
Cited by: 11
Author(s): Lauriane Hennet, Angélique Berger, Noemí Trabanco, Emeline Ricciuti, Jean François Dufayard, Stéphanie Bocs, Denis Bastianelli, Laurent Bonnal, Sandrine Roques, Laura Rossini, Delphine Luquet, Nancy Terrier, David Pot
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0116776

FastGCN: A GPU Accelerated Tool for Fast Gene Co-Expression Networks
Cited by: 29
Author(s): Meimei Liang, Futao Zhang, Gulei Jin, Jun Zhu
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2019.01459

A Combined Transcriptomic and Genomic Analysis Identifies a Gene Signature Associated With the Response to Anti-TNF Therapy in Rheumatoid Arthritis
Cited by: 22
Author(s): Adrià Aterido, Juan D. Cañete, Jesús Tornero, Francisco J. Blanco, Benjamín Fernández‐Gutiérrez, Carolina Pérez, Mercedes Alperi-López, A Olivé, Hèctor Corominas, Víctor M. Martínez‐Taboada, Inmaculada Fernández González, Antonio Fernández‐Nebro, Alba Erra, María López-Lasanta, Mireia López-Corbeto, Núria Palau, Sara Marsal, Antonio Julià
Software Mentions: 1
Published: about 7 years ago

10.1038/srep38575

Expression profiling and functional annotation of noncoding genes across 11 distinct organs in rat development
Cited by: 4
Author(s): Zhiping Wen, Geng Chen, Sibo Zhu, Jiaquan Zhu, Bin Li, Yunjie Song, Suqing Li, Leming Shi, Yuanting Zheng, Menglong Li
Software Mentions: 1
Published: almost 10 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479