cran: WGCNA | Projects | Ecosyste.ms: Papers

10.1186/s13059-014-0525-9

Characterizing heterogeneity in leukemic cells using single-cell gene expression analysis
Cited by: 58
Author(s): Assieh Saadatpour, Guoji Guo, Stuart H. Orkin, Guo Cheng Yuan
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pcbi.1004332

Revealing Pathway Dynamics in Heart Diseases by Analyzing Multiple Differential Networks
Cited by: 42
Author(s): Xiaoke Ma, Long Gao, Georgios Karamanlidis, Peng Gao, Chi Fung Lee, Lorena Garcia-Menendez, Rong Tian, Kai Tan
Software Mentions: 1
Published: about 11 years ago

10.1186/s13059-014-0457-4

The small RNA diversity from Medicago truncatularoots under biotic interactions evidences the environmental plasticity of the miRNAome
Cited by: 69
Author(s): Damien Formey, Erika Sallet, Christine Lelandais‐Brière, Cécile Ben, Pilar Bustos-Sanmamed, Andréas Niebel, Florian Frugier, Jean Combier, Frederic Debellé, Caroline Hartmann, Julie Poulain, Fréderick Gavory, Patrick Wincker, Christophe Roux, Laurent Gentzbittel, Jérôme Gouzy, Martín Crespi
Software Mentions: 1
Published: about 12 years ago

10.1186/gb-2012-13-10-r97

Aging effects on DNA methylation modules in human brain and blood tissue
Cited by: 527
Author(s): Steve Horvath, Yafeng Zhang, Peter Langfelder, René S. Kahn, Marco P. Boks, Kristel R. van Eijk, Leonard H. van den Berg, Roel A. Ophoff
Software Mentions: 1
Published: over 14 years ago

10.1186/s12711-016-0217-x

Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare
Cited by: 125
Author(s): Prashanth Suravajhala, Lisette J. A. Kogelman, Haja N. Kadarmideen
Software Mentions: 1
Published: over 10 years ago

10.1186/gm452

Genes and pathways underlying regional and cell type changes in Alzheimer's disease
Cited by: 209
Author(s): Jeremy A. Miller, Randall L. Woltjer, Jeff M Goodenbour, Steve Horvath, Daniel H. Geschwind
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pcbi.1006436

Condition-adaptive fused graphical lasso (CFGL): An adaptive procedure for inferring condition-specific gene co-expression network
Cited by: 17
Author(s): Yafei Lyu, Lingzhou Xue, Feipeng Zhang, Hillary Koch, Laura Saba, Katerina Kechris, Qunhua Li
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms22010454

RNA-Seq Provides New Insights into the Molecular Events Involved in “Ball-Skin versus Bladder Effect” on Fruit Cracking in Litchi
Cited by: 10
Author(s): Jun Wang, Xuehong Wu, Yong Tang, Jian Guo Li, Ming Zhao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1002773

Distinct Neurogenomic States in Basal Ganglia Subregions Relate Differently to Singing Behavior in Songbirds
Cited by: 25
Author(s): Austin T. Hilliard, Julie E. Miller, Steve Horvath, Stephanie A. White
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12263-021-00697-1

Vegetarian diet duration’s influence on women’s gut environment
Cited by: 3
Author(s): Xinqi Deng, Jiangtao Si, Yonglong Qu, Jie Li, Yingkun He, Chun-Guo Wang, Yuping Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12263-019-0639-5

Weighted gene co-expression network analysis to explain the relationship between plasma total carotenoids and lipid profile
Cited by: 9
Author(s): Bénédicte L. Tremblay, Frédéric Guénard, Benoı̂t Lamarche, Louis Pérusse, Marie‐Claude Vohl
Software Mentions: 1
Published: over 7 years ago

10.3390/genes12081254

Pseudogene Transcripts in Head and Neck Cancer: Literature Review and In Silico Analysis
Cited by: 4
Author(s): Juliana Carron, Rafael Della Coletta, Gustavo Jacob Lourenço
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21249417

Activation of the Ion Channel TRPV4 Induces Epithelial to Mesenchymal Transition in Breast Cancer Cells
Cited by: 20
Author(s): Iman Azimi, Mélanie Robitaille, Kaela Armitage, Choon Leng So, Michael J. G. Milevskiy, Korinne Northwood, Huai Fang Lim, Erik W. Thompson, Sarah J. Roberts‐Thomson, Gregory R. Monteith
Software Mentions: 1
Published: over 5 years ago

10.1186/s13073-017-0444-y

brain-coX: investigating and visualising gene co-expression in seven human brain transcriptomic datasets
Cited by: 11
Author(s): Saskia Freytag, Rosemary Burgess, Karen Oliver, Melanie Bahlo
Software Mentions: 1
Published: about 9 years ago

10.1186/s13073-017-0466-5

Parkinson’s disease is associated with DNA methylation levels in human blood and saliva
Cited by: 111
Author(s): Yen Chuang, Kimberly C. Paul, Jeff M. Bronstein, Yvette Bordelon, Steve Horvath, Beate Ritz
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pbio.3000986

Clustering of Tir during enteropathogenic E. coli infection triggers calcium influx–dependent pyroptosis in intestinal epithelial cells
Cited by: 13
Author(s): Qiyun Zhong, Theodoros I. Roumeliotis, Zuza Kozik, Massiel Cepeda-Molero, Luis A. Fernández, Avinash R. Shenoy, Chris Bakal, Gad Frankel, Jyoti S. Choudhary
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12030449

Identification of Chlorophyll Metabolism- and Photosynthesis-Related Genes Regulating Green Flower Color in Chrysanthemum by Integrative Transcriptome and Weighted Correlation Network Analyses
Cited by: 7
Author(s): Hansen Fu, Tuo Zeng, Yangyang Zhao, Tingting Luo, Huijie Deng, Chenwei Meng, Luo Jia, Caiyun Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12010087

K-Module Algorithm: An Additional Step to Improve the Clustering Results of WGCNA Co-Expression Networks
Cited by: 15
Author(s): Jie Hou, Xiufen Ye, Chuanlong Li, Yixing Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13073-021-00845-7

Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer
Cited by: 36
Author(s): Hryhorii Chereda, Annalen Bleckmann, Kerstin Menck, Júlia Perera-Bel, Philip Stegmaier, Florian Auer, Frank Krämer, Andreas Leha, Tim Beißbarth
Software Mentions: 1
Published: over 5 years ago

10.3390/genes11080942

Advances in Genomics for Drug Development
Cited by: 18
Author(s): Roberto Spreafico, Leah Soriaga, Johannes Grosse, Herbert W. Virgin, Amalio Telenti
Software Mentions: 1
Published: about 6 years ago

10.3390/genes11080927

Genome-Wide Analysis of the Role of NAC Family in Flower Development and Abiotic Stress Responses in Cleistogenes songorica
Cited by: 10
Author(s): Xifang Zong, Yan Qi, Fan Wu, Qian Ma, Jiyu Zhang
Software Mentions: 1
Published: about 6 years ago

10.3390/genes11030315

Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets
Cited by: 11
Author(s): Yi Wang, Rui Zhang, Zhenchang Liang, Shaohua Li
Software Mentions: 1
Published: over 6 years ago

10.3390/genes10110920

RNA Sequencing Reveals That Both Abiotic and Biotic Stress-Responsive Genes are Induced during Expression of Steroidal Glycoalkaloid in Potato Tuber Subjected to Light Exposure
Cited by: 6
Author(s): Weina Zhang, Cunwu Zuo, Zhongjian Chen, Yichen Kang, Shuhao Qin
Software Mentions: 1
Published: almost 7 years ago

10.3390/plants10081699

Genome-Wide Identification and Functional Investigation of 1-Aminocyclopropane-1-carboxylic Acid Oxidase (ACO) Genes in Cotton
Cited by: 3
Author(s): Hengling Wei, Yujun Xue, Pengyun Chen, Pengbo Hao, Fei Wei, Lu Sun, Yonglin Yang
Software Mentions: 1
Published: about 5 years ago

10.3390/genes10100798

Transcriptional Networks of Microglia in Alzheimer’s Disease and Insights into Pathogenesis
Cited by: 17
Author(s): Gabriel Chew, Enrico Petretto
Software Mentions: 1
Published: almost 7 years ago

10.1002/pld3.70

A sorghum <scp>NAC</scp> gene is associated with variation in biomass properties and yield potential
Cited by: 32
Author(s): Jingnu Xia, Yunjun Zhao, Payne S. Burks, Markus Pauly, Patrick J. Brown
Software Mentions: 1
Published: about 8 years ago

10.3390/genes10040296

Brassica napus Infected with Leptosphaeria maculans
Cited by: 8
Author(s): Jinqi Ma, Lijuan Wei, Lin Ai, Chao Zhang, Wei Sun, Bo Yang, Kun Lu, Jiana Li
Software Mentions: 1
Published: over 7 years ago

10.3390/genes9070336

Transcriptome Analysis of Adipose Tissue Indicates That the cAMP Signaling Pathway Affects the Feed Efficiency of Pigs
Cited by: 23
Author(s): Yongming Xu, Xiaolong Qi, Mingyang Hu, Ruiyi Lin, Ye Hou, Zhangxu Wang, Huanhuan Zhou, Yi‐Fang Zhao, Yu Luan, Shuhong Zhao, Xinyun Li
Software Mentions: 1
Published: about 8 years ago

10.1093/gigascience/gix059

The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization
Cited by: 145
Author(s): Xiaodong Du, Guangyi Fan, Yu Jiao, He Zhang, Ximing Guo, Ronglian Huang, Zhe Zheng, Chao Bian, Yuewen Deng, Qingheng Wang, Zhongduo Wang, Xinming Liang, Haiying Liang, Chengcheng Shi, Xiyang Zhao, Fengming Sun, Ruijuan Hao, Jie Bai, Liu Jialiang, Wenbin Chen, Jinlian Liang, Weiqing Liu, Zhe Xu, Qiong Shi, Xun Xu, Guofan Zhang, Xin Liu
Software Mentions: 1
Published: about 9 years ago

10.1111/pbi.13325

DcMYB113, a root‐specific R2R3‐MYB, conditions anthocyanin biosynthesis and modification in carrot
Cited by: 74
Author(s): Zhihong Xu, Qingqing Yang, Kai Feng, Xin Yu, Ai‐Sheng Xiong
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9070325

Weighted Gene Co-Expression Network Analysis Reveals Dysregulation of Mitochondrial Oxidative Phosphorylation in Eating Disorders
Cited by: 4
Author(s): Liulin Yang, Yun Li, Turki Turki, Huizi Tan, Zhi Wei, Xiao Chang
Software Mentions: 1
Published: about 8 years ago

10.1053/j.gastro.2021.01.221

Mucosal Genomics Implicate Lymphocyte Activation and Lipid Metabolism in Refractory Environmental Enteric Dysfunction
Cited by: 34
Author(s): Yael Haberman, Najeeha Talat Iqbal, Sudhir Ghandikota, Indika Mallawaarachchi, Tzipi Braun, Phillip Dexheimer, Najeeb Rahman, Rotem Hadar, Kamran Sadiq, Zubair Ahmad, Romana Idress, Junaid Iqbal, Sheraz Ahmed, Aneeta Hotwani, Fayyaz Umrani, Lubaina Ehsan, Greg Medlock, Sana Syed, Chris Moskaluk, Z. Jennie, Anil G. Jegga, Sean R. Moore, Syed Asad Ali, Lee A. Denson
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.01201

Editorial: Using Cancer ‘Omics’ to Understand Cancer
Cited by: 4
Author(s): Barbara K. Dunn, Daoud Meerzaman
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2020.598801

Identification of Metabolism-Associated Prostate Cancer Subtypes and Construction of a Prognostic Risk Model
Cited by: 14
Author(s): Yanlong Zhang, Ruiqiao Zhang, Fangzhi Liang, Liyun Zhang, Xingwei Liang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2020.01787

Transcriptome-Based Network Analysis Unveils Eight Immune-Related Genes as Molecular Signatures in the Immunomodulatory Subtype of Triple-Negative Breast Cancer
Cited by: 24
Author(s): Jinguo Zhang, Li Wang, Xiaolin Xu, Xin Li, Wencai Guan, Ting Meng, Guoxiong Xu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s41065-019-0089-5

Identification of the defense-related gene VdWRKY53 from the wild grapevine Vitis davidii using RNA sequencing and ectopic expression analysis in Arabidopsis
Cited by: 10
Author(s): Ying Zhang, Jia‐Long Yao, Hui Feng, Jianfu Jiang, Xiucai Fan, Yunfei Jia, Ran Wang, Chonghuai Liu
Software Mentions: 1
Published: over 7 years ago

10.3389/fnins.2021.647974

ABCA7 Regulates Brain Fatty Acid Metabolism During LPS-Induced Acute Inflammation
Cited by: 11
Author(s): Tomonori Aikawa, Yingxue Ren, Magnus Holm, Yan W. Asmann, Amer Alam, Michael L. Fitzgerald, Guojun Bu, Takahisa Kanekiyo
Software Mentions: 1
Published: over 5 years ago

10.1007/s00425-020-03544-6

Systematic identification and characterization of circular RNAs involved in flag leaf senescence of rice
Cited by: 15
Author(s): Xiaoping Huang, Hongyu Zhang, Rong Guo, Qiang Wang, Xuanzhi Liu, Weigang Kuang, Haiyan Song, Jiang-Lin Liao, Yongji Huang, Zhaohai Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fnins.2019.00926

Pilot Study of Metabolomic Clusters as State Markers of Major Depression and Outcomes to CBT Treatment
Cited by: 13
Author(s): Sudeepa Bhattacharyya, Boadie W. Dunlop, Siamak MahmoudianDehkordi, Ahmed T. Ahmed, Gregory Louie, Mark A. Frye, Richard M. Weinshilboum, Ranga Krishnan, A. John Rush, Helen S. Mayberg, W. Edward Craighead, Rima Kaddurah‐Daouk
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnins.2020.00571

Gene Deregulation and Underlying Mechanisms in Spinocerebellar Ataxias With Polyglutamine Expansion
Cited by: 15
Author(s): Anna Niewiadomska-Cimicka, Antoine Hache, Yvon Trottier
Software Mentions: 1
Published: about 6 years ago

10.14814/phy2.12208

Genetic modulation of diabetic nephropathy among mouse strains with Ins2<i>Akita</i>mutation
Cited by: 7
Author(s): Xinhui Wu, Richard C. Davis, Timothy S. McMillen, Valérie Schaeffer, Zhiqiang Zhou, Hongxiu Qi, Parisa N. Mazandarani, Roshanak Alialy, Kelly L. Hudkins, Aldons J. Lusis, Renée C. LeBoeuf
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnins.2020.00228

Erosion of Gene Co-expression Networks Reveal Deregulation of Immune System Processes in Late-Onset Alzheimer’s Disease
Cited by: 5
Author(s): John Malamon, Andres Kriete
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.4107

Constructing a comprehensive gene co-expression based interactome in <i>Bos taurus</i>
Cited by: 9
Author(s): Yan Chen, Yining Liu, Min Du, Wengang Zhang, Lei Xu, Xue Gao, Lupei Zhang, Huijiang Gao, Lingyang Xu, Junya Li, Min Zhao
Software Mentions: 1
Published: almost 9 years ago

10.1186/s41065-019-0083-y

Bladder cancer stage-associated hub genes revealed by WGCNA co-expression network analysis
Cited by: 63
Author(s): Yu Di, Dongshan Chen, Wenxia Yu, Lei Yan
Software Mentions: 1
Published: over 7 years ago

10.3389/fnins.2021.629156

Characterizing the Expression Patterns of Parkinson’s Disease Associated Genes
Cited by: 5
Author(s): Bin Li, Guizhe Zhao, Kuokuo Li, Zheng Wang, Zhenghuan Fang, Xiaomeng Wang, Tengfei Luo, Yi Zhang, Yijing Wang, Qian Chen, Yuanfeng Huang, Lijie Dong, Jifeng Guo, Beisha Tang, Jinchen Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fnins.2014.00331

Neuroinformatic analyses of common and distinct genetic components associated with major neuropsychiatric disorders
Cited by: 70
Author(s): Amit Lotan, Michaela Fencková, Janita Bralten, Aet Alttoa, Luanna Dixson, Robert W. Williams, Monique van der Voet
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnins.2015.00176

Epigenetic modulation of brain gene networks for cocaine and alcohol abuse
Cited by: 47
Author(s): Sean P. Farris, R. Adron Harris, Igor Ponomarev
Software Mentions: 1
Published: over 11 years ago

10.3389/fneur.2020.00233

The Predicted Key Molecules, Functions, and Pathways That Bridge Mild Cognitive Impairment (MCI) and Alzheimer's Disease (AD)
Cited by: 42
Author(s): Tao Ye, Yoo Min Han, Lujiao Yu, Qi Wang, Sean X. Leng, Haiyan Zhang
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.16703

Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
Cited by: 12
Author(s): Jingxia Lin, Xuefei Li, Fangfei Zhang, Lei Zhu, Yongfeng Chen
Software Mentions: 1
Published: over 5 years ago

10.1093/bioinformatics/btv598

Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data
Cited by: 1
Author(s): Juan J. Díaz-Montaña, Owen J. L. Rackham, Norberto Díaz–Díaz, Enrico Petretto
Software Mentions: 1
Published: almost 11 years ago

10.3389/fneur.2020.578972

Phenotypic Subtyping and Re-analyses of Existing Transcriptomic Data from Autistic Probands in Simplex Families Reveal Differentially Expressed and ASD Trait-Associated Genes
Cited by: 4
Author(s): Valerie W. Hu, Chongfeng Bi
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnmol.2019.00197

Cross-Species Co-analysis of Prefrontal Cortex Chronic Ethanol Transcriptome Responses in Mice and Monkeys
Cited by: 21
Author(s): James W. Bogenpohl, Maren L. Smith, Sean P. Farris, Catherine I. Dumur, Marcelo F. López, Howard C. Becker, Kathleen A. Grant, Michael F. Miles
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.9773

Significance of hub genes and immune cell infiltration identified by bioinformatics analysis in pelvic organ prolapse
Cited by: 8
Author(s): Ying Zhao, Zhijun Xia, Te Yu Lin, Yitong Yin
Software Mentions: 1
Published: about 6 years ago

10.1002/jcla.23680

Constructing a 10‐core genes panel for diagnosis of pediatric sepsis
Cited by: 4
Author(s): Xiaojie Zhou, Yumin Wang, Jie Chen, Jingye Pan
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40529-017-0176-8

Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis
Cited by: 11
Author(s): Po-Chih Shen, Ai-Ling Hour, Liyu Liu
Software Mentions: 1
Published: over 9 years ago

10.3390/jcm8101719

Reformulating Pro-Oxidant Microglia in Neurodegeneration
Cited by: 45
Author(s): Juan García-Revilla, Isabel María Alonso-Bellido, Miguel Ángel Burguillos, Antonio J. Herrera, Ana M. Espinosa-Oliva, Rocío Ruiz, Luis Cruz-Hernández, Irene García-Domínguez, María Angustias Roca-Ceballos, Marti Santiago, José A. Rodríguez‐Gómez, Manuel Sarmiento Soto, Rocío M. de Pablos, José L. Venero
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnmol.2015.00042

Dynamical properties of gene regulatory networks involved in long-term potentiation
Cited by: 4
Author(s): Gonzalo S. Nido, Margaret M. Ryan, Ľubica Beňušková, Joanna M. Williams
Software Mentions: 1
Published: about 11 years ago

10.1038/s41408-021-00409-3

XPO1 inhibitors represent a novel therapeutic option in Adult T-cell Leukemia, triggering p53-mediated caspase-dependent apoptosis
Cited by: 3
Author(s): Eline Boons, Tatiane C Nogueira, Tim Dierckx, Soraya Maria Menezes, Maarten Jacquemyn, Sharon Tamir, Yosef Landesman, Lourdes Farré, Achiléa Lisboa Bittencourt, Keisuke Kataoka, Seishi Ogawa, Robert Snoeck, Gracíela Andrei, Johan Van Weyenbergh, Dirk Daelemans
Software Mentions: 1
Published: over 5 years ago

10.3389/fnmol.2017.00399

Co-expression Patterns between ATN1 and ATXN2 Coincide with Brain Regions Affected in Huntington’s Disease
Cited by: 10
Author(s): Arlin Keo, N. Ahmad Aziz, Oleh Dzyubachyk, Jeroen van der Grond, Willeke M. C. van Roon‐Mom, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Mahfouz
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13068-019-1440-9

Omics-based analyses revealed metabolic responses of Clostridium acetobutylicum to lignocellulose-derived inhibitors furfural, formic acid and phenol stress for butanol fermentation
Cited by: 38
Author(s): Bin Liu, Jing Zhang, Jian Yuan, Xiaolong Jiang, Lingyan Jiang, Guang Zhao, Di Huang
Software Mentions: 1
Published: over 7 years ago

10.3389/fnmol.2018.00102

Integrating Genetic and Gene Co-expression Analysis Identifies Gene Networks Involved in Alcohol and Stress Responses
Cited by: 10
Author(s): Jianxun Luo, Pei Xu, Peijian Cao, Hongjian Wan, Xiaonan Lv, Shengchun Xu, Gangjun Wang, Melloni N. Cook, Byron C. Jones, Lu Lu, Xusheng Wang
Software Mentions: 1
Published: over 8 years ago

10.1186/s13068-018-1291-9

De novo transcriptome assembly of the bamboo snout beetle Cyrtotrachelus buqueti reveals ability to degrade lignocellulose of bamboo feedstock
Cited by: 20
Author(s): Chaobing Luo, Yuanqiu Li, Hong Liao, Yaolong Yang
Software Mentions: 1
Published: almost 8 years ago

10.1042/BSR20202649

Screening of key genes related to the prognosis of mouse sepsis
Cited by: 9
Author(s): Muhu Chen, Xue Chen, Yingchun Hu, Xianfu Cai
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnmol.2016.00139

mRNA Transcriptomics of Galectins Unveils Heterogeneous Organization in Mouse and Human Brain
Cited by: 9
Author(s): Sebastian John, Rashmi Mishra
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms18040828

Delineating the Common Biological Pathways Perturbed by ASD’s Genetic Etiology: Lessons from Network-Based Studies
Cited by: 25
Author(s): Oded Oron, Evan Elliott
Software Mentions: 1
Published: over 9 years ago

10.3389/fmolb.2021.602227

Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8+ T Cell Infiltration
Cited by: 3
Author(s): Yiping Zou, Zhihong Chen, Hongwei Han, Su Ruan, Lina Jin, Yuanpeng Zhang, Zhengrong Chen, Zuyi Ma, Qi Lou, Ning Shi, Haosheng Jin
Software Mentions: 1
Published: over 5 years ago

10.3389/fmolb.2019.00139

Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data
Cited by: 14
Author(s): Edgardo Galán-Vásquez, Ernesto Pérez‐Rueda
Software Mentions: 1
Published: over 6 years ago

10.3389/fmolb.2021.625470

Exploration of a Robust and Prognostic Immune Related Gene Signature for Cervical Squamous Cell Carcinoma
Cited by: 7
Author(s): Zhihua Zuo, Junjun Xiong, Chuyi Zeng, Yao Jiang, Kang Xiong, Hualin Tao, Yongcan Guo
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms18071560

Co-Expression Network and Pathway Analyses Reveal Important Modules of miRNAs Regulating Milk Yield and Component Traits
Cited by: 34
Author(s): Duy Ngoc, Pier-Luc Dudemaine, Ran Li, Eveline M. Ibeagha‐Awemu
Software Mentions: 1
Published: about 9 years ago

10.1042/BSR20204219

A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
Cited by: 6
Author(s): Huan Ding, Huan Hu, Fei Tian, Huaping Liang
Software Mentions: 1
Published: over 5 years ago

10.1042/BSR20203458

A panel of two miRNAs correlated to systolic blood pressure is a good diagnostic indicator for stroke
Cited by: 3
Author(s): Yujun Qi, Mingfeng Yuan, Qiong Yi, Yan Wang, Lei Xu, Changshui Xu, Min Lü
Software Mentions: 1
Published: over 5 years ago

10.3389/fmolb.2020.598599

Identification and Immunocorrelation of Prognosis-Related Genes Associated With Development of Muscle-Invasive Bladder Cancer
Cited by: 4
Author(s): Jingxian Li, Yantao Lou, Shuai Li, Fei Sheng, Shuaibing Liu, Eugenie Du, Zhihong Zhang
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/eraa206

Low temperature modulates natural peel degreening in lemon fruit independently of endogenous ethylene
Cited by: 24
Author(s): Oscar W. Mitalo, Takumi Otsuki, Rui Okada, Saeka Obitsu, Kanae Masuda, Yuko Hojo, Takakazu Matsuura, Izumi C. Mori, Daigo Abe, William Olubero Asiche, Takashi Akagi, Yasutaka Kubo, Koichiro Ushijima
Software Mentions: 1
Published: over 6 years ago

10.3389/fmolb.2021.655361

Network-Based Expression Analyses and Experimental Verifications Reveal the Involvement of STUB1 in Acute Kidney Injury
Cited by: 7
Author(s): Yanting Shi, Genwen Chen, Jie Teng
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1003196

Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross
Cited by: 179
Author(s): Martin T. Ferris, David L. Aylor, Daniel Bottomly, Alan C. Whitmore, Lauri Aicher, Timothy A. Bell, Birgit Bradel-Tretheway, Janine T. Bryan, Ryan J. Buus, Lisa E. Gralinski, Bart L. Haagmans, Leonard McMillan, Darla R. Miller, Elizabeth Rosenzweig, William Valdar, Jeremy Wang, Gary A. Churchill, David W. Threadgill, Shannon K. McWeeney, Michael G. Katze, Fernando Pardo-Manuel de Villena, Ralph S. Baric, Mark T. Heise
Software Mentions: 1
Published: over 13 years ago

10.3389/fmolb.2021.682471

Hub Long Noncoding RNAs with m6A Modification for Signatures and Prognostic Values in Kidney Renal Clear Cell Carcinoma
Cited by: 10
Author(s): Gaoteng Lin, Huadong Wang, Yuqi Wu, Keruo Wang, Gang Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2017.00096

Quantifying Gene Regulatory Relationships with Association Measures: A Comparative Study
Cited by: 25
Author(s): Zhiping Liu
Software Mentions: 1
Published: about 9 years ago

10.3389/fgene.2020.00453

Identifying the Transcriptional Regulatory Network Associated With Extrathyroidal Extension in Papillary Thyroid Carcinoma by Comprehensive Bioinformatics Analysis
Cited by: 1
Author(s): Yong Chen, Bo Jiang, Wenlong Wang, Duntao Su, Fada Xia, Xinying Li
Software Mentions: 1
Published: over 6 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479