cran: WGCNA | Projects | Ecosyste.ms: Papers

10.1038/s41438-021-00591-2

Integrative iTRAQ-based proteomic and transcriptomic analysis reveals the accumulation patterns of key metabolites associated with oil quality during seed ripening of Camellia oleifera
Cited by: 28
Author(s): Zhouchen Ye, Jing Yu, Wuping Yan, Junfeng Zhang, Dongmei Yang, Guanglong Yao, Zijin Liu, Yougen Wu, Xilin Hou
Software Mentions: 1
Published: over 3 years ago

10.7150/jca.38211

Bioinformatics analysis and identification of potential genes related to pathogenesis of cervical intraepithelial neoplasia
Cited by: 9
Author(s): Xue Zhang, Jian Bai, Cheng Yuan, Long Long, Zhewen Zheng, Qingqing Wang, Fengxia Chen, Youwen Zhou
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41438-020-0245-0

A temporal gene expression map of Chrysanthemum leaves infected with Alternaria alternata reveals different stages of defense mechanisms
Cited by: 21
Author(s): Ye Liu, Jingjing Xin, Lina Liu, Aiping Song, Zhiyong Guan, Weimin Fang, Fadi Chen
Software Mentions: 1
Published: over 4 years ago

10.7150/jca.39645

Identification of Key Gene and Pathways for the Prediction of Peritoneal Metastasis of Gastric Cancer by Co-expression Analysis
Cited by: 11
Author(s): Simeng Zhang, Dan Zang, Changhong Yu, Zhi Li, Bowen Yang, Tianshu Guo, Yunpeng Liu, Xiujuan Qu, Xiaofang Che
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41438-019-0225-4

Tea plant genomics: achievements, challenges and perspectives
Cited by: 90
Author(s): Enhua Xia, Wei Tong, Qiong Wu, Wei Shu, Jian Zhao, Zhengzhu Zhang, Chaoling Wei, Xiaochun Wan
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41438-021-00653-5

Genomic and transcriptomic analyses of Citrus sinensis varieties provide insights into Valencia orange fruit mastication trait formation
Cited by: 8
Author(s): Guizhi Feng, Xiu Ai, Hualin Yi, Wen‐Wu Guo, Juxun Wu
Software Mentions: 1
Published: about 3 years ago

10.1155/2017/4535710

Metabolic Differences between Dogs of Different Body Sizes
Cited by: 26
Author(s): Rondo Middleton, Sébastien Lacroix, Marie‐Pier Scott‐Boyer, N. Ðorđević, Adam D. Kennedy, Amanda R. Slusky, Jérôme Carayol, Christina Petzinger-Germain, Alison N. Beloshapka, Jim Kaput
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41438-020-0279-3

Transcriptome profiles reveal that gibberellin-related genes regulate weeping traits in crape myrtle
Cited by: 14
Author(s): Suzhen Li, Tangchun Zheng, Xiaokang Zhuo, Zhuojiao Li, Lulu Li, Ping Li, Like Qiu, Huitang Pan, Jia Wang, Tangren Cheng, Qixiang Zhang
Software Mentions: 1
Published: over 4 years ago

10.1007/s10120-018-00911-x

Prognostic and clinicopathological significance of long noncoding RNA CTD-2510F5.4 in gastric cancer
Cited by: 30
Author(s): Zhe Wang, Baoli Qin
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/5531736

Identification of MiR-93-5p Targeted Pathogenic Markers in Acute Myeloid Leukemia through Integrative Bioinformatics Analysis and Clinical Validation
Cited by: 2
Author(s): Jie Wang, Yun Wu, Nazim Uddin, Hao Jian-ping, Rong Chen, Dai-qin Xiong, Nan Ding, Jianhua Yang, Jianhua Wang, Xiaowen Ding
Software Mentions: 1
Published: over 3 years ago

10.1534/g3.120.401067

NetExtractor: Extracting a Cerebellar Tissue Gene Regulatory Network Using Differentially Expressed High Mutual Information Binary RNA Profiles
Cited by: 2
Author(s): Benafsh Husain, Allison R Hickman, Yuqing Hang, Benjamin T. Shealy, Karan Sapra, Frank Alexander Feltus
Software Mentions: 1
Published: about 4 years ago

10.1155/2021/4836292

The Heterogeneity of Infiltrating Macrophages in Metastatic Osteosarcoma and Its Correlation with Immunotherapy
Cited by: 7
Author(s): Zhanchao Wang, Huiqiao Wu, Yu Chen, Huajiang Chen, Wen Yuan, Xinwei Wang
Software Mentions: 1
Published: over 3 years ago

10.7150/jca.52156

Identification of Prognosis-related Hub RNA Binding Proteins Function through Regulating Metabolic Processes in Tongue Cancer
Cited by: 6
Author(s): Tao Shen, Meiting Wang, Xiangting Wang
Software Mentions: 1
Published: almost 4 years ago

10.1534/g3.120.401275

Dissecting the Genetic Architecture of Cystatin C in Diversity Outbred Mice
Cited by: 9
Author(s): Md. Nazmul Huda, Melissa VerHague, Jody Albright, Tangi Smallwood, Timothy A. Bell, Excel Que, Darla R. Miller, Baback Roshanravan, Hooman Allayee, Fernando P Pardo Manuel De Villena, Brian J. Bennett
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0170870

Preferential expression of scores of functionally and evolutionarily diverse DNA and RNA-binding proteins during Oxytricha trifallax macronuclear development
Cited by: 7
Author(s): Zachary T. Neeb, Daniel J. Hogan, Sol Katzman, Alan M. Zahler
Software Mentions: 1
Published: almost 8 years ago

10.1534/g3.117.043679

Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat
Cited by: 52
Author(s): Philippa Borrill, Sophie A Harrington, Cristóbal Uauy
Software Mentions: 1
Published: about 7 years ago

10.7150/jca.51059

A Novel Set of Immune-associated Gene Signature predicts Biochemical Recurrence in Localized Prostate Cancer Patients after Radical Prostatectomy
Cited by: 8
Author(s): Jiaochen Luan, Qijie Zhang, Kai Zhao, Xiang Zhou, Liangyu Yao, Tongtong Zhang, Taidui Zeng, Jun Xia, Ninghong Song
Software Mentions: 1
Published: almost 4 years ago

10.1534/g3.117.042408

A Systemic Analysis of Transcriptomic and Epigenomic Data To Reveal Regulation Patterns for Complex Disease
Cited by: 6
Author(s): Chao Xu, Jigang Zhang, Dongdong Lin, Lan Zhang, Hui Shen, Hong‐Wen Deng
Software Mentions: 1
Published: over 7 years ago

10.1534/g3.116.033894

Preservation Analysis of Macrophage Gene Coexpression Between Human and Mouse Identifies PARK2 as a Genetically Controlled Master Regulator of Oxidative Phosphorylation in Humans
Cited by: 12
Author(s): Veronica Codoni, Yuna Blum, Mete Civelek, Carole Proust, Oscar Franzén, Johan Björkegren, Wilfried Le Goff, François Cambien, Aldons J. Lusis, David‐Alexandre Trégouët
Software Mentions: 1
Published: about 8 years ago

10.1534/g3.112.004788

Systems-Level Analysis of Genome-Wide Association Data
Cited by: 43
Author(s): Charles R. Farber
Software Mentions: 1
Published: almost 12 years ago

10.1007/s10142-019-00678-z

Global transcriptome analysis uncovers the gene co-expression regulation network and key genes involved in grain development of wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Qing Chi, Lijian Guo, Meng Ma, Lijian Zhang, Hude Mao, Baowei Wu, Xiangli Liu, Ricardo H. Ramírez-González, Cristóbal Uauy, R. Appels, Huixian Zhao
Software Mentions: 1
Published: over 5 years ago

10.1007/s10142-018-0607-y

Comparison of gene co-networks reveals the molecular mechanisms of the rice (Oryza sativa L.) response to Rhizoctonia solani AG1 IA infection
Cited by: 15
Author(s): Jinfeng Zhang, Wenjuan Zhao, Rong Fu, Chunyan Fu, Lingxia Wang, Huainian Liu, Shuangcheng Li, Qi Deng, Shiquan Wang, Jun Zhu, Yueyang Liang, Ping Li, Aiping Zheng
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0183359

Titanium biomaterials with complex surfaces induced aberrant peripheral circadian rhythms in bone marrow mesenchymal stromal cells
Cited by: 18
Author(s): Nathaniel Hassan, Kirstin McCarville, Kenzo Morinaga, Cristiane Machado Mengatto, Peter Langfelder, Akishige Hokugo, Yu Tahara, Christopher S. Colwell, Ichiro Nishimura
Software Mentions: 1
Published: over 7 years ago

10.1186/s12983-019-0336-7

Gene expression vs. sequence divergence: comparative transcriptome sequencing among natural Rhinolophus ferrumequinum populations with different acoustic phenotypes
Cited by: 12
Author(s): Hanbo Zhao, Hui Wang, Tong Liu, Sen Liu, Longru Jin, Xiaobin Huang, Wentao Dai, Keping Sun, Jiang Feng
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/5533923

CD8+ T Lymphocyte Coexpression Genes Correlate with Immune Microenvironment and Overall Survival in Breast Cancer
Cited by: 0
Author(s): Jialing Jiang, Yi Zhao
Software Mentions: 1
Published: over 3 years ago

10.1111/jcmm.12447

Pathway mapping and development of disease‐specific biomarkers: protein‐based network biomarkers
Cited by: 23
Author(s): Hao Chen, Zhou Zhu, Ying–Hui Zhu, Jian Wang, Yunqing Mei, Yunfeng Cheng
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpsyt.2021.581093

Gene Expression Differences Between Young Adults Based on Trauma History and Post-traumatic Stress Disorder
Cited by: 0
Author(s): Kaitlin Bountress, Vladimir I. Vladimirov, Gowon O. McMichael, Zachary N. Taylor, Gary Hardiman, Dongjun Chung, Zachary W. Adams, Carla Kmett Danielson, Ananda B. Amstadter
Software Mentions: 1
Published: over 3 years ago

10.1111/jcmm.14300

Temporal expression and functional analysis of long non‐coding <scp>RNA</scp> s in colorectal cancer initiation
Cited by: 19
Author(s): Lei Dai, Junshu Li, Zhexu Dong, Y Liu, Ye Chen, Na Chen, Lin Cheng, Chao Fang, Huiling Wang, Yanhong Ji, Shuang Chen, Xiaolan Su, Gang Shi, Yi Lin, Shuang Zhang, Yang Yang, Qingcai Meng, Dechao Yu, Wei Huang, Zong‐Guang Zhou, Yuquan Wei, Hongxin Deng
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.14422

Long non‐coding RNAs in the spinal cord injury: Novel spotlight
Cited by: 18
Author(s): Zheng Li, Idy H. T. Ho, Xingye Li, Derong Xu, William Ka Kei Wu, Matthew T. V. Chan, Shugang Li, Xiao Dong Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fpsyt.2020.580307

A Weighted Gene Co-expression Network Analysis Reveals lncRNA Abnormalities in the Peripheral Blood Associated With Ultra-High-Risk for Psychosis
Cited by: 2
Author(s): Yan Ren, Wei Li, Sha Li, Zhi Li, Jiaying Wang, Hong Yang, Yong Xu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpsyt.2020.543893

Non-Coding RNAs in Psychiatric Disorders and Suicidal Behavior
Cited by: 38
Author(s): Yuta Yoshino, Yogesh K. Dwivedi
Software Mentions: 1
Published: about 4 years ago

10.1111/jcmm.14746

Pan‐cancer RNA‐seq data stratifies tumours by some hallmarks of cancer
Cited by: 26
Author(s): Frederick G. Frost, Praveen F. Cherukuri, Samuel Milanovich, Cornelius F. Boerkoel
Software Mentions: 1
Published: about 5 years ago

10.1111/jcmm.14676

Expression and functional analysis of lncRNAs in the hippocampus of immature rats with status epilepticus
Cited by: 6
Author(s): Jing Gan, Lingyi Huang, Yi Qu, Rong Luo, Qianyun Cai, Fengyan Zhao, Dezhi Mu
Software Mentions: 1
Published: about 5 years ago

10.1111/jcmm.14828

The CCN1 (CYR61) protein promotes skin growth by enhancing epithelial‐mesenchymal transition during skin expansion
Cited by: 9
Author(s): Yiwen Zhou, Haizhou Li, Xiao Liang, Hengyu Du, Yingjun Suo, Hao Chen, Wenhui Liu, Ran Duan, Xiaolu Huang, Qingfeng Li
Software Mentions: 1
Published: almost 5 years ago

10.1111/jcmm.14852

Identification of dynamic signatures associated with smoking‐related squamous cell lung cancer and chronic obstructive pulmonary disease
Cited by: 10
Author(s): Xiaoru Sun, Jingzhe Shang, Aiping Wu, Jingyan Xia, Feng Xu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpsyt.2019.00706

Integrated Analysis of Brain Transcriptome Reveals Convergent Molecular Pathways in Autism Spectrum Disorder
Cited by: 12
Author(s): Xiaodan Li, Yuncong Zhang, Luxi Wang, Yunqing Lin, Zhaomin Gao, Xiaolei Zhan, Yan Huang, Chongde Sun, Dong Wang, Shuang Liang, Lijie Wu
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.00398

Spatiotemporal Transcriptome Analysis Provides Insights into Bicolor Tepal Development in Lilium “Tiny Padhye”
Cited by: 39
Author(s): Liang Xu, Panpan Yang, Yue Feng, Hua Xu, Yuwei Cao, Yuchao Tang, Suxia Yuan, Xinyan Li, Jun Ming
Software Mentions: 1
Published: over 7 years ago

10.1111/jcmm.14976

Transcriptome analyses reveal molecular mechanisms underlying phenotypic differences among transcriptional subtypes of glioblastoma
Cited by: 20
Author(s): Yuan‐Bo Pan, Siqi Wang, Biao Yang, Zhenqi Jiang, Cameron Lenahan, Jianhua Wang, Jianmin Zhang, Anwen Shao
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0100204

Whole Brain Expression of Bipolar Disorder Associated Genes: Structural and Genetic Analyses
Cited by: 23
Author(s): Michael J. McCarthy, Sheng-Fu Liang, Andrea D. Spadoni, John R. Kelsoe, Alan N. Simmons
Software Mentions: 1
Published: over 10 years ago

10.1111/jcmm.15145

Gene signatures based on therapy responsiveness provide guidance for combined radiotherapy and chemotherapy for lower grade glioma
Cited by: 10
Author(s): Guangqi Li, Yufei Jiang, Xintong Lyu, Yiru Cai, Miao Zhang, Qiao Qiao
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0077629

Serum Metabolomics of Slow vs. Rapid Motor Progression Parkinson’s Disease: a Pilot Study
Cited by: 101
Author(s): James R. Roede, Karan Uppal, Youngja Park, Kichun Lee, ViLinh Tran, Douglas I. Walker, Frederick H. Strobel, Shannon Rhodes, Beate Ritz, Dean P. Jones
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0134706

Interleukin 21 Controls mRNA and MicroRNA Expression in CD40-Activated Chronic Lymphocytic Leukemia Cells
Cited by: 15
Author(s): Loris De Cecco, Matteo Capaia, Simona Zupo, Giovanna Cutrona, Serena Matis, Antonella Brizzolara, Anna Maria Orengo, Michela Croce, Edoardo Marchesi, Manlio Ferrarini, Silvana Canevari, Silvano Ferrini
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2018.01155

Shedding Light on Chemically Mediated Tri-Trophic Interactions: A 1H-NMR Network Approach to Identify Compound Structural Features and Associated Biological Activity
Cited by: 10
Author(s): Lora A. Richards, Celso José Bruno de Oliveira, Lee A. Dyer, Arran Rumbaugh, Federico Urbano-Muñoz, Ian S. Wallace, Craig D. Dodson, Christopher S. Jeffrey
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2021.679629

Transcriptome Analysis of Resistance to Fusarium Wilt in Mung Bean (Vigna radiata L.)
Cited by: 6
Author(s): Yuan‐Jen Chang, Feifei Sun, Shufeng Sun, Lanfen Wang, Jing Wu, Zhendong Zhu
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2016.00497

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System
Cited by: 67
Author(s): Collin M. Timm, Dale A. Pelletier, Sara Jawdy, Lee E. Gunter, Jeremiah A. Henning, Nancy L. Engle, Jayde A. Aufrecht, Emily Gee, Intawat Nookaew, Zamin K. Yang, Tse Yuan S Lu, Timothy J. Tschaplinski, Mitchel J. Doktycz, Gerald A. Tuskan, David J. Weston
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2020.01256

Transcriptome and Flavonoids Metabolomic Analysis Identifies Regulatory Networks and Hub Genes in Black and White Fruits of Lycium ruthenicum Murray
Cited by: 16
Author(s): Tingting Li, Yunfang Fan, Huan Qin, Guoli Dai, Guo‐Xiu Li, Yanlong Li, Jingjin Wang, Yue Yin, Fang Chen, Xiaoya Qin, Yang Cao, Lin Tang
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.23219

Co-expression analysis revealed PTCH1-3'UTR promoted cell migration and invasion by activating miR-101-3p/SLC39A6 axis in non-small cell lung cancer: implicating the novel function of PTCH1
Cited by: 21
Author(s): Xuechao Wan, Zhe Kong, Kaili Chu, Chuanyou Yi, Jian Hu, Rui Qin, Chunxia Zhao, Fangqiu Fu, Hai Wu, Yao Li, Yan Huang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2020.00224

Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses
Cited by: 11
Author(s): Lauriane Hennet, Angélique Berger, Noemí Trabanco, Emeline Ricciuti, Jean François Dufayard, Stéphanie Bocs, Denis Bastianelli, Laurent Bonnal, Sandrine Roques, Laura Rossini, Delphine Luquet, Nancy Terrier, David Pot
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.15561

Systematic analysis on multiple Gene Expression Omnibus data sets reveals fierce immune response in hepatitis B virus‐related acute liver failure
Cited by: 3
Author(s): Huadi Chen, Wenting Zhao, Yixi Zhang, Yiwen Guo, Weixin Luo, Xiaobo Wang, Yu Nie, Maodong Ye, Changjun Huang, Dongping Wang, Maogen Chen, Xiaoshun He, Qiang Zhao
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2018.01139

The Galling Truth: Limited Knowledge of Gall-Associated Volatiles in Multitrophic Interactions
Cited by: 13
Author(s): Renée M. Borges
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0020716

Hippocampal Gene Expression Analysis Highlights Ly6a/Sca-1 as Candidate Gene for Previously Mapped Novelty Induced Behaviors in Mice
Cited by: 6
Author(s): Simone de Jong, Martien Kas, Jeffrey Kiernan, Annetrude J G de Mooij-van Malsen, Hugo Oppelaar, Esther Janson, Igor Vukobradovic, Charles R. Farber, William L. Stanford, Roel A. Ophoff
Software Mentions: 1
Published: over 13 years ago

10.3389/fpls.2021.668736

Comparison of Transcriptional Response of C3 and C4 Plants to Drought Stress Using Meta-Analysis and Systems Biology Approach
Cited by: 7
Author(s): Ahmad Tahmasebi, Ali Niazi‎
Software Mentions: 1
Published: over 3 years ago

10.1111/jcmm.15690

Landscape of associations between long non‐coding RNAs and infiltrating immune cells in liver hepatocellular carcinoma
Cited by: 7
Author(s): Li Li, Xiaowei Song, Yanju Lv, Qi Jiang, Chengjuan Fan, Dayong Huang
Software Mentions: 1
Published: about 4 years ago

10.1111/jcmm.15923

GNG5 is an unfavourable independent prognostic indicator of gliomas
Cited by: 11
Author(s): Biao Yang, Zhaolong Han, Wen‐Juan Wang, Yupo Ma, Sheng‐Hua Chu
Software Mentions: 1
Published: about 4 years ago

10.3389/fpls.2017.01371

Phenotypic and Comparative Transcriptome Analysis of Different Ploidy Plants in Dendrocalamus latiflorus Munro
Cited by: 11
Author(s): Guirong Qiao, Mingying Liu, Kunlin Song, Haiying Li, Haiming Yang, Yafang Yin, Renying Zhuo
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2017.00092

De novo Transcriptome Assembly of Chinese Kale and Global Expression Analysis of Genes Involved in Glucosinolate Metabolism in Multiple Tissues
Cited by: 19
Author(s): Shi-Fang Wu, Jing Liu, Guoju Chen, Hancai Chen, Bihao Cao, Changming Chen
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2021.705321

A Tissue-Specific Landscape of Alternative Polyadenylation, lncRNAs, TFs, and Gene Co-expression Networks in Liriodendron chinense
Cited by: 9
Author(s): Zhonghua Tu, Yu-Fang Shen, Shaoying Wen, Huanhuan Liu, Lingmin Wei, Huogen Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2020.604849

Network Analysis Combining Proteomics and Metabolomics Reveals New Insights Into Early Responses of Eucalyptus grandis During Rust Infection
Cited by: 11
Author(s): Alline Sekiya, Felipe Garbelini Marques, Thiago Falda Leite, Thaís Regiani Cataldi, Fabrício Edgar de Moraes, Ana Lúcia Mendes Pinheiro, Mônica Teresa Veneziano Labate, Carlos Alberto Labate
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2015.00829

Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach
Cited by: 16
Author(s): Wenchuan Xie, Junfeng Huang, Yang Liu, Rao Jianan, Da Luo, Miao He
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2020.528108

Comparative Genomics of Spatholobus suberectus and Insight Into Flavonoid Biosynthesis
Cited by: 5
Author(s): Shuangshuang Qin, Kunhua Wei, Zhan-Hu Cui, Ying Liang, Mingjie Li, Li Gu, Chuyun Yang, Xiaolei Zhou, Linxuan Li, Wei Xü, Can Liu, Miao Jin, Zhongyi Zhang
Software Mentions: 1
Published: about 4 years ago

10.3389/fpls.2020.616338

Interspecific Variation in the Unsaturation Level of Seed Oils Were Associated With the Expression Pattern Shifts of Duplicated Desaturase Genes and the Potential Role of Other Regulatory Genes
Cited by: 3
Author(s): Mengli Wang, Lexuan Gao, Gengyun Li, Chengchuan Zhou, Jinjing Jian, Zhen Xing, Yuguo Wang, Wenju Zhang, Song Zhang, Yonghong Hu, Ji Hyun Yang
Software Mentions: 1
Published: almost 4 years ago

10.1155/2018/8726456

“Omics” Signatures in Peripheral Monocytes from Women with Low BMD Condition
Cited by: 2
Author(s): Bhavna Daswani, M. Ikram Khatkhatay
Software Mentions: 1
Published: almost 7 years ago

10.1097/MD.0000000000009738

Identification of gene expression models for laryngeal squamous cell carcinoma using co-expression network analysis
Cited by: 9
Author(s): Chao Yang, Shufang Wang, Xiangli Yang, Lin Wang, Lin Niu, Jixiang Liu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2021.624319

Grafting Delays Watermel on Fruit Ripening by Altering Gene Expression of ABA Centric Phytohormone Signaling
Cited by: 5
Author(s): Sheng Guo, Honghe Sun, Jiaxing Tian, Guoyu Zhang, Guoyi Gong, Yi Ren, Jie Zhang, Maoying Li, Haiying Zhang, Haizhen Li, Yong Xu
Software Mentions: 1
Published: over 3 years ago

10.1093/molbev/msab004

Functional Diversification, Redundancy, and Epistasis among Paralogs of the <i>Drosophila melanogaster Obp50a–d</i> Gene Cluster
Cited by: 10
Author(s): Joel A. Johnstun, Vijay Shankar, Sneha S Mokashi, Lakshmi T. Sunkara, Ugonna E Ihearahu, Roberta Lyman, Trudy F. C. Mackay, Robert R. H. Anholt
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2014.00565

Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores
Cited by: 38
Author(s): Heidi M. Appel, Howard W. Fescemyer, Jürgen Ehlting, David J. Weston, Erin MacNeal Rehrig, Trupti Joshi, Dong Xu, Jöerg Bohlmann, Jack C. Schultz
Software Mentions: 1
Published: about 10 years ago

10.3389/fpls.2018.00137

A Systems Biology Study in Tomato Fruit Reveals Correlations between the Ascorbate Pool and Genes Involved in Ribosome Biogenesis, Translation, and the Heat-Shock Response
Cited by: 9
Author(s): Rebecca Stevens, Piérre Baldet, Jean‐Paul Bouchet, Mathilde Causse, Catherine Deborde, Claire Deschodt, Mireille Faurobert, Cécile Garchery, Virginie Garcia, Hélène Gautier, Barbara Gouble, Mickaël Maucourt, Annick Moing, David L. Page, J. Petit, Jean‐Luc Poëssel, Vincent Truffault, Christophe Rothan
Software Mentions: 1
Published: almost 7 years ago

10.3389/fphys.2019.00662

Analysis of Genes Involved in Ulcerative Colitis Activity and Tumorigenesis Through Systematic Mining of Gene Co-expression Networks
Cited by: 28
Author(s): Wu Shi, Rongjun Zou, Minglei Yang, Lei Mai, Jiangnan Ren, Ji Wen, Zhaoshi Liu, Renxu Lai
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2019.00275

Identification of the Biomarkers and Pathological Process of Osteoarthritis: Weighted Gene Co-expression Network Analysis
Cited by: 36
Author(s): Hao Gu, Min Yang, Jia Guo, Zhang Chao, Lu-Lu Lin, Yang Liu, Renxiong Wei
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2018.01841

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis
Cited by: 7
Author(s): Amnah Siddiqa, Elisa Cirillo, Samar Tareen, Amjad Ali, Martina Kutmon, Lars Eijssen, Jamil Ahmad, Chris T. Evelo, Susan L. Coort
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2016.01155

Changes in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive Compounds
Cited by: 33
Author(s): Haifeng Geng, Mary Bao Tran-Gyamfi, Todd W. Lane, Kenneth L. Sale, Eizadora T. Yu
Software Mentions: 1
Published: over 8 years ago

10.1007/s00335-016-9656-5

Uncovering the liver’s role in immunity through RNA co-expression networks
Cited by: 11
Author(s): Kylie K. Harrall, Katerina Kechris, Boris Tabakoff, Paula L. Hoffman, Lisa M. Hines, Hidekazu Tsukamoto, Michal Pravenec, Morton P. Printz, Laura Saba
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-10127-1

Analysis of temporal expression profiles after sciatic nerve injury by bioinformatic method
Cited by: 4
Author(s): Yichong Zhang, Yuanbo Zhan, Ning Han, Yuhui Kou, Xiaofeng Yin, Peixun Zhang
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.00352

Alterations of the Mice Gut Microbiome via Schistosoma japonicum Ova-Induced Granuloma
Cited by: 29
Author(s): Yanqing Zhao, Shuxu Yang, Bei Li, Wei Li, Jue Wang, Zongyun Chen, Jing Yang, Huabing Tan, Jian Li
Software Mentions: 1
Published: over 5 years ago

10.1016/j.isci.2021.102265

Temporal metabolic and transcriptomic characteristics crossing islets and liver reveal dynamic pathophysiology in diet-induced diabetes
Cited by: 8
Author(s): Rui Gao, Qi Fu, Hemin Jiang, Min Shen, Ruipeng Zhao, Yu Q, Yunqiang He, Kuanfeng Xu, Xinyu Xu, Heng Chen, Quan Zhang, Tao Yang
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2015.00487

Identification of a transporter Slr0982 involved in ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803
Cited by: 25
Author(s): Yanan Zhang, Xiangfeng Niu, Mengliang Shi, Guangsheng Pei, Xiaoqing Zhang, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 9 years ago

10.3389/fmed.2020.584747

Integrating Tumor Stroma Biomarkers With Clinical Indicators for Colon Cancer Survival Stratification
Cited by: 4
Author(s): Yong Chen, Wenlong Wang, Bo Jiang, Lei Yao, Fada Xia, Xinying Li
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.26554

Integrative system genetic analysis reveals mRNA-lncRNA network associated with mouse spontaneous lung cancer susceptibility
Cited by: 2
Author(s): Yanzhao Zhou, Ming You
Software Mentions: 1
Published: almost 6 years ago

Projects: cran: WGCNA

Papers Mentioning WGCNA 3,479