cran: WGCNA | Projects | Ecosyste.ms: Papers

10.1186/s12931-017-0558-1

Network-based analysis reveals novel gene signatures in peripheral blood of patients with chronic obstructive pulmonary disease
Cited by: 31
Author(s): Ma’en Obeidat, Yunlong Nie, Virginia Chen, Casey P. Shannon, Anand Kumar Andiappan, Bernett Lee, Olaf Rötzschke, Peter J. Castaldi, Craig P. Hersh, Nick Fishbane, Raymond T. Ng, Bruce M. McManus, Bruce E. Miller, Stephen I. Rennard, Peter D. Paré, Don D. Sin
Software Mentions: 1
Published: over 9 years ago

10.1186/s12931-018-0965-y

Do sputum or circulating blood samples reflect the pulmonary transcriptomic differences of COPD patients? A multi-tissue transcriptomic network META-analysis
Cited by: 8
Author(s): Rosa Faner, Jarrett Morrow, Sandra Casas-Recasens, Suzanne M. Cloonan, Guillaume Noell, Alejandra López-Giraldo, Ruth Tal‐Singer, Bruce E. Miller, Edwin K. Silverman, Àlvar Agustí, Craig P. Hersh
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21051675

Genetic Identification and Transcriptome Analysis of Lintless and Fuzzless Traits in Gossypium arboreum L.
Cited by: 18
Author(s): Xueying Liu, Philippe Moncuquet, Qian Zhu, Warwick N. Stiller, Zhengsheng Zhang, Iain W. Wilson
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-019-1105-z

Multi-level immune response network in mild-moderate Chronic Obstructive Pulmonary Disease (COPD)
Cited by: 33
Author(s): Tamara Cruz, Alejandra López-Giraldo, Guillaume Noell, Sandra Casas-Recasens, Tamara García, Laureano Molins, Manel Juan, Marco A. Fernández, Àlvar Agustí, Rosa Faner
Software Mentions: 1
Published: about 7 years ago

10.1038/s41419-019-2043-x

Exploring specific prognostic biomarkers in triple-negative breast cancer
Cited by: 53
Author(s): Chang Bao, Yunkun Lu, Jishun Chen, Danni Chen, Weiyang Lou, Bo Ding, Liang Xu, Weimin Fan
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms18071560

Co-Expression Network and Pathway Analyses Reveal Important Modules of miRNAs Regulating Milk Yield and Component Traits
Cited by: 34
Author(s): Duy Ngoc, Pier-Luc Dudemaine, Ran Li, Eveline M. Ibeagha‐Awemu
Software Mentions: 1
Published: about 9 years ago

10.1186/s12284-020-00437-w

Long Non-coding RNAs Responsive to Blast Fungus Infection in Rice
Cited by: 16
Author(s): Lanlan Wang, Jingjing Jin, Lihua Li, Shaohong Qu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12284-020-00439-8

Weighted Gene Co-Expression Network Coupled with a Critical-Time-Point Analysis during Pathogenesis for Predicting the Molecular Mechanism Underlying Blast Resistance in Rice
Cited by: 2
Author(s): Dagang Tian, Zaijie Chen, Yan Lin, Ziqiang Chen, Zonghua Wang, Wang Feng
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41419-020-03305-z

Weighted gene coexpression network and experimental analyses identify lncRNA SPRR2C as a regulator of the IL-22-stimulated HaCaT cell phenotype through the miR-330/STAT1/S100A7 axis
Cited by: 14
Author(s): Meijunzi Luo, Pan Huang, Yi Pan, Zhu Zhu, Rong Zhou, Zhibo Yang, Chang Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-019-1777-7

An integrative genomic analysis of transcriptional profiles identifies characteristic genes and patterns in HIV-infected long-term non-progressors and elite controllers
Cited by: 10
Author(s): Jiwei Ding, Ling Ma, Jin Zhao, Yun Xie, Jinming Zhou, Xiaoyü Li, Shan Cen
Software Mentions: 1
Published: over 7 years ago

10.1186/s13578-021-00633-1

Multiple responses contribute to the enhanced drought tolerance of the autotetraploid Ziziphus jujuba Mill. var. spinosa
Cited by: 16
Author(s): Meng Li, Chenxing Zhang, Lei Hou, Weicong Yang, Songshan Liu, Xiaoming Pang, Yingyue Li
Software Mentions: 1
Published: about 5 years ago

10.1002/mgg3.1478

Identification of a missense <i>ARSA</i> mutation in metachromatic leukodystrophy and its potential pathogenic mechanism
Cited by: 2
Author(s): Liyuan Guo, Bo Jin, Yidan Zhang, Jing Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers13122990

Transcriptomic and Genetic Associations between Alzheimer’s Disease, Parkinson’s Disease, and Cancer
Cited by: 24
Author(s): Jaume Forés-Martos, César Boullosa, David Rodrigo-Domínguez, Jon Sánchez-Valle, Beatriz Suay-García, Joan Climent, Antonio Falcó, Alfonso Valencia, Joan Antón Puig-Butillé, Susana Puig, Rafael Tabarés‐Seisdedos
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.596174

Identification of Key Modules and Hub Genes of Annulus Fibrosus in Intervertebral Disc Degeneration
Cited by: 2
Author(s): Hantao Wang, Liu Wen-hui, Bo Yu, Xiaosheng Yu, Bin Chen
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12082230

Interplay of tRNA-Derived Fragments and T Cell Activation in Breast Cancer Patient Survival
Cited by: 17
Author(s): Nayang Shan, Ningshan Li, Qile Dai, Lin Hou, Xiting Yan, Amei Amei, Lei Lü, Zuoheng Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers11040477

Exosomal miRNAs as Novel Pharmacodynamic Biomarkers for Cancer Chemopreventive Agent Early Stage Treatments in Chemically Induced Mouse Model of Lung Squamous Cell Carcinoma
Cited by: 6
Author(s): Yanzhao Zhou, Ming You, Meijun Du, Donghai Xiong, Yian Wang, Altaf Mohammed, Ronald A. Lubet, Liang Wang, Ming You
Software Mentions: 1
Published: over 7 years ago

10.1038/s41597-021-00828-8

Nelumbo genome database, an integrative resource for gene expression and variants of Nelumbo nucifera
Cited by: 22
Author(s): Hui Li, Xingyu Yang, Yue Zhang, Zhiyan Gao, Yuting Liang, Jin‐Ming Chen, Tao Shi
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers11111688

Secondary Somatic Mutations in G-Protein-Related Pathways and Mutation Signatures in Uveal Melanoma
Cited by: 17
Author(s): Francesca Piaggio, Veronica Tozzo, Cinzia Bernardi, Michela Croce, Roberto Puzone, Silvia Viaggi, Serena Patrone, Annalisa Barla, Domenico Coviello, Martine J. Jager, Pieter A. van der Velden, Michael Zeschnigk, Davide Cangelosi, Alessandra Eva, Ulrich Pfeffer, Adriana Amaro
Software Mentions: 1
Published: almost 7 years ago

10.3389/fphys.2018.01841

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis
Cited by: 7
Author(s): Amnah Siddiqa, Elisa Cirillo, Samar Tareen, Amjad Ali, Martina Kutmon, Lars Eijssen, Jamil Ahmad, Chris T. Evelo, Susan L. Coort
Software Mentions: 1
Published: over 7 years ago

10.1038/srep12298

Network analysis of immunotherapy-induced regressing tumours identifies novel synergistic drug combinations
Cited by: 55
Author(s): W. Joost Lesterhuis, Catherine Rinaldi, Anya C. Jones, Esdy N. Rozali, Ian M. Dick, Andrea Khong, Louis Boon, Bruce Robinson, Anna K. Nowak, Anthony Bosco, Richard Lake
Software Mentions: 1
Published: about 11 years ago

10.3390/cancers12071809

Identification of GSN and LAMC2 as Key Prognostic Genes of Bladder Cancer by Integrated Bioinformatics Analysis
Cited by: 16
Author(s): Jia-Lian Yang, Charles C.N. Wang, Jia-Hua Cai, Che‐Yi Chou, Yu‐Hsien Lin, Chin‐Chuan Hung
Software Mentions: 1
Published: about 6 years ago

10.1038/srep13248

Derivation of a fifteen gene prognostic panel for six cancers
Cited by: 22
Author(s): Mamata F. Khirade, Girdhari Lal, Sharmila A. Bapat
Software Mentions: 1
Published: about 11 years ago

10.7150/ijms.61771

PD-L1 correlated gene expression profiles and tumor infiltrating lymphocytes in pancreatic cancer
Cited by: 2
Author(s): Jiajin Li, Lu Yin, Yumei Chen, Shuxian An, Yi Xiong, Gang Huang, Jianjun Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.598801

Identification of Metabolism-Associated Prostate Cancer Subtypes and Construction of a Prognostic Risk Model
Cited by: 14
Author(s): Yanlong Zhang, Ruiqiao Zhang, Fangzhi Liang, Liyun Zhang, Xingwei Liang
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep17494

Honey bee microRNAs respond to infection by the microsporidian parasite Nosema ceranae
Cited by: 15
Author(s): Qiang Huang, Yanping Chen, Rui Wu Wang, Ryan S. Schwarz, Jay D. Evans
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep18045

Proteome Analysis of Renoprotection Mediated by a Novel Cyclic Helix B Peptide in Acute Kidney Injury
Cited by: 18
Author(s): Cheng Yang, Junjun Liu, Li Long, Man Hu, Ya‐Qiu Long, Xiaohui Liu, Tongyu Zhu, Xiao Huang, Shouliang Zhao, Shangfeng Liu, Ruiming Rong
Software Mentions: 1
Published: over 10 years ago

10.1038/srep19430

DNA co-methylation modules in postmortem prefrontal cortex tissues of European Australians with alcohol use disorders
Cited by: 66
Author(s): Fan Wang, Hao Xu, Hongyu Zhao, Joel Gelernter, Huiping Zhang
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.8504

A transcriptional co-expression network-based approach to identify prognostic biomarkers in gastric carcinoma
Cited by: 5
Author(s): Danqi Liu, Boting Zhou, Rangru Liu
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.698598

Integrative Identification of Crucial Genes Associated With Plant Hormone-Mediated Bud Dormancy in Prunus mume
Cited by: 6
Author(s): Ping Li, Tangchun Zheng, Zhiyong Zhang, Weichao Liu, Like Qiu, Jia Wang, Tangren Cheng, Qixiang Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2021.610087

Stratification of Estrogen Receptor-Negative Breast Cancer Patients by Integrating the Somatic Mutations and Transcriptomic Data
Cited by: 2
Author(s): Jie Hou, Xiufen Ye, Yixing Wang, Chuanlong Li
Software Mentions: 1
Published: over 5 years ago

10.22038/IJBMS.2018.29498.7123

Gene co-expression network analysis identifies BRCC3 as a key regulator in osteogenic differentiation of osteoblasts through a β-catenin signaling dependent pathway.
Cited by: 0
Author(s): Lixiong Cai, Zhiqian Huo, Huiling Yang, HE Feng-chun, Zheng-lin Cao, Feng Wu, Lianjun Liu, Bing‐Yin Sun
Software Mentions: 1
Published: over 7 years ago

10.1038/srep25261

Elucidation of molecular and functional heterogeneity through differential expression network analyses of discrete tumor subsets
Cited by: 6
Author(s): Rutika R. Naik, Nilesh Gardi, Sharmila A. Bapat
Software Mentions: 1
Published: over 10 years ago

10.1038/srep26396

The simple neuroendocrine-immune regulatory network in oyster Crassostrea gigas mediates complex functions
Cited by: 38
Author(s): Zhaoqun Liu, Lingling Wang, Zhi Zhou, Ying Sun, Mengqiang Wang, Hao Wang, Zujun Hou, Dahai Gao, Qiang Gao, Linsheng Song
Software Mentions: 1
Published: over 10 years ago

10.3389/fnins.2020.00571

Gene Deregulation and Underlying Mechanisms in Spinocerebellar Ataxias With Polyglutamine Expansion
Cited by: 15
Author(s): Anna Niewiadomska-Cimicka, Antoine Hache, Yvon Trottier
Software Mentions: 1
Published: about 6 years ago

10.1038/srep28422

Construction and application of a co-expression network in Mycobacterium tuberculosis
Cited by: 31
Author(s): Jun Jiang, Xian Sun, Wei Wu, Li Li, Hai Wu, Lu Zhang, Guohua Yu, Yao Li
Software Mentions: 1
Published: about 10 years ago

10.1155/2021/6664791

Coexpressed Genes That Promote the Infiltration of M2 Macrophages in Melanoma Can Evaluate the Prognosis and Immunotherapy Outcome
Cited by: 13
Author(s): Kexin Yan, Yutao Wang, Yuxiu Lu, Zhangyong Yan
Software Mentions: 1
Published: over 5 years ago

10.1038/srep29052

Integrative Network-based Analysis of Magnetic Resonance Spectroscopy and Genome Wide Expression in Glioblastoma multiforme
Cited by: 19
Author(s): Dieter Henrik Heiland, Irina Mader, Pascal Schlosser, Dietmar Pfeifer, Maria Stella Carro, Thomas Lange, Ralf Schwarzwald, Ioannis Vasilikos, Horst Urbach, Astrid Weyerbrock
Software Mentions: 1
Published: about 10 years ago

10.1038/srep28663

Indexing Effects of Copy Number Variation on Genes Involved in Developmental Delay
Cited by: 35
Author(s): Mohammed Uddin, Giovanna Pellecchia, Bhooma Thiruvahindrapuram, Lia D’Abate, Daniele Merico, Ada J.S. Chan, Mehdi Zarrei, Kristiina Tammimies, Susan Walker, Matthew J. Gazzellone, Thomas Nalpathamkalam, Ryan K. C. Yuen, Koenraad Devriendt, Géraldine Mathonnet, Emmanuelle Lemyre, Sonia Nizard, Mary Shago, Ann M. Joseph-George, Abdul Noor, Melissa T. Carter, Grace Yoon, Peter Kannu, Frédérique Tihy, Erik C. Thorland, Christian R. Marshall, Janet A. Buchanan, Marsha Speevak, Dimitri J. Stavropoulos, Stephen W. Scherer
Software Mentions: 1
Published: about 10 years ago

10.3389/fphys.2019.00275

Identification of the Biomarkers and Pathological Process of Osteoarthritis: Weighted Gene Co-expression Network Analysis
Cited by: 36
Author(s): Hao Gu, Min Yang, Jia Guo, Zhang Chao, Lu-Lu Lin, Yang Liu, Renxiong Wei
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2021.720888

Construction of a Novel Gene-Based Model for Survival Prediction of Hepatitis B Virus Carriers With HCC Development
Cited by: 1
Author(s): Yuan Huang, Wenling Tu, Yan-Qiu Yao, Ye-Ling Cai, Liping Ma
Software Mentions: 1
Published: about 5 years ago

10.1186/s12986-021-00555-2

Weighted gene co-expression network analysis to identify key modules and hub genes related to hyperlipidaemia
Cited by: 3
Author(s): Fu Jun Liao, Peng-Fei Zheng, Yao-Zong Guan, Hong Pan, Li Wei
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/5518908

Screening Prognosis-Related lncRNAs Based on WGCNA to Establish a New Risk Score for Predicting Prognosis in Patients with Hepatocellular Carcinoma
Cited by: 4
Author(s): Xueliang Zhou, Mengmeng Dou, Zaoqu Liu, Dechao Jiao, Zhaonan Li, Jianjian Chen, Jing Li, Yuan Yao, Lifeng Li, Yahua Li, Xinwei Han
Software Mentions: 1
Published: about 5 years ago

10.1038/srep31851

Single-cell RNA-seq reveals distinct injury responses in different types of DRG sensory neurons
Cited by: 109
Author(s): Ganlu Hu, Kevin Huang, Youjin Hu, Guizhen Du, Zhigang Xue, Xianmin Zhu, Guoping Fan
Software Mentions: 1
Published: about 10 years ago

10.1038/srep32005

Integrative effect of drought and low temperature on litchi (Litchi chinensis Sonn.) floral initiation revealed by dynamic genome-wide transcriptome analysis
Cited by: 24
Author(s): Jiyuan Shen, Qiusheng Xiao, Haiji Qiu, Chengjie Chen, Houbin Chen
Software Mentions: 1
Published: about 10 years ago

10.1038/srep33227

Network Analysis of Fine Particulate Matter (PM2.5) Emissions in China
Cited by: 12
Author(s): Shaomin Yan, Guang Wu
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33655

Drought response transcriptomes are altered in poplar with reduced tonoplast sucrose transporter expression
Cited by: 24
Author(s): Liang‐Jiao Xue, Christopher J. Frost, Chung‐Jui Tsai, Chung‐Jui Tsai
Software Mentions: 1
Published: almost 10 years ago

10.3390/cancers10090307

A Comprehensive Survey of Immune Cytolytic Activity-Associated Gene Co-Expression Networks across 17 Tumor and Normal Tissue Types
Cited by: 4
Author(s): Tian Tian, Ji Wan, Han Yan, Haoran Liu, Feng Gao, Ying Pan, Qi Song, Zhi Wei
Software Mentions: 1
Published: about 8 years ago

10.3390/v11080683

Hepatitis C Virus as a Unique Human Model Disease to Define Differences in the Transcriptional Landscape of T Cells in Acute versus Chronic Infection
Cited by: 5
Author(s): David Wolski, Georg M. Lauer
Software Mentions: 1
Published: about 7 years ago

10.1186/s12967-021-02879-2

METTL13 inhibits progression of clear cell renal cell carcinoma with repression on PI3K/AKT/mTOR/HIF-1α pathway and c-Myc expression
Cited by: 13
Author(s): Zhuonan Liu, Tianshui Sun, Chiyuan Piao, Zhe Zhang, Chuize Kong
Software Mentions: 1
Published: over 5 years ago

10.1038/srep38575

Expression profiling and functional annotation of noncoding genes across 11 distinct organs in rat development
Cited by: 4
Author(s): Zhiping Wen, Geng Chen, Sibo Zhu, Jiaquan Zhu, Bin Li, Yunjie Song, Suqing Li, Leming Shi, Yuanting Zheng, Menglong Li
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38956

Pan- and core- network analysis of co-expression genes in a model plant
Cited by: 20
Author(s): Fei He, Sergei Maslov
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules22060889

Comprehensive Characterization for Ginsenosides Biosynthesis in Ginseng Root by Integration Analysis of Chemical and Transcriptome
Cited by: 21
Author(s): Jingjing Zhang, He Su, Lei Zhang, Baosheng Liao, Shaobo Xiao, Lixin Dong, Zhigang Hu, Ping Wang, Xiwen Li, Zhixing Huang, Zhiming Gao, Lianjuan Zhang, Liang Shen, Ruiyang Cheng, Jiang Xu, Shilin Chen
Software Mentions: 1
Published: over 9 years ago

10.1186/s12967-015-0383-6

Berberine ameliorates nonalcoholic fatty liver disease by a global modulation of hepatic mRNA and lncRNA expression profiles
Cited by: 86
Author(s): Xinlu Yuan, Jie Wang, Xiaoyan Tang, Yixue Li, Pu Xia, Xin Gao
Software Mentions: 1
Published: over 11 years ago

10.1038/srep39614

Genetically regulated hepatic transcripts and pathways orchestrate haematological, biochemical and body composition traits
Cited by: 7
Author(s): Siriluck Ponsuksili, Nares Trakooljul, Frieder Hadlich, Fiete Haack, Eduard Muráni, Klaus Wimmers
Software Mentions: 1
Published: over 9 years ago

10.1038/s41388-020-1379-0

Targeting the MAPK7/MMP9 axis for metastasis in primary bone cancer
Cited by: 21
Author(s): Darrell Green, Heather Eyre, Archana Archana, Jessica Taylor, Jason Chu, Lee Jeys, Vaiyapuri P. Sumathi, Aman S. Coonar, Doris M. Rassl, Muhammad Babur, Duncan Forster, Saba Alzabin, Frida Ponthan, Adam McMahon, Brian Bigger, Tristan A. Reekie, Kaye J. Williams, Tamás Dalmay, William D. Fraser, Katherine G. Finegan
Software Mentions: 1
Published: about 6 years ago

10.1038/s41388-021-01859-6

LncRNA MIR17HG promotes colorectal cancer liver metastasis by mediating a glycolysis-associated positive feedback circuit
Cited by: 39
Author(s): Senlin Zhao, Bingjie Guan, Yushuai Mi, Debing Shi, Ping Wei, Yanzi Gu, Sanjun Cai, Ye Xu, Xinxiang Li, Dongwang Yan, Mingzhu Huang, Dawei Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fnins.2019.00926

Pilot Study of Metabolomic Clusters as State Markers of Major Depression and Outcomes to CBT Treatment
Cited by: 13
Author(s): Sudeepa Bhattacharyya, Boadie W. Dunlop, Siamak MahmoudianDehkordi, Ahmed T. Ahmed, Gregory Louie, Mark A. Frye, Richard M. Weinshilboum, Ranga Krishnan, A. John Rush, Helen S. Mayberg, W. Edward Craighead, Rima Kaddurah‐Daouk
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep43523

Integrative Diffusion-Weighted Imaging and Radiogenomic Network Analysis of Glioblastoma multiforme
Cited by: 18
Author(s): Dieter Henrik Heiland, Carl Philipp Simon-Gabriel, Theo Demerath, Gerrit Haaker, Dietmar Pfeifer, Elias Kellner, Valerij G. Kiselev, Ori Staszewski, Horst Urbach, Astrid Weyerbrock, Irina Mader
Software Mentions: 1
Published: over 9 years ago

10.3389/fnins.2021.647974

ABCA7 Regulates Brain Fatty Acid Metabolism During LPS-Induced Acute Inflammation
Cited by: 11
Author(s): Tomonori Aikawa, Yingxue Ren, Magnus Holm, Yan W. Asmann, Amer Alam, Michael L. Fitzgerald, Guojun Bu, Takahisa Kanekiyo
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2018.00137

A Systems Biology Study in Tomato Fruit Reveals Correlations between the Ascorbate Pool and Genes Involved in Ribosome Biogenesis, Translation, and the Heat-Shock Response
Cited by: 9
Author(s): Rebecca Stevens, Piérre Baldet, Jean‐Paul Bouchet, Mathilde Causse, Catherine Deborde, Claire Deschodt, Mireille Faurobert, Cécile Garchery, Virginie Garcia, Hélène Gautier, Barbara Gouble, Mickaël Maucourt, Annick Moing, David L. Page, J. Petit, Jean‐Luc Poëssel, Vincent Truffault, Christophe Rothan
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.7197

Screening of immunosuppressive factors for biomarkers of breast cancer malignancy phenotypes and subtype-specific targeted therapy
Cited by: 2
Author(s): Ping Wang, Jiaxuan Liu, Yunlei Song, Qiang Liu, Chao Wang, Caiyun Qian, Shuhua Zhang, Weixing Zhu, Xiaohong Yang, Fang Wan, Kebin Liu, Daya Luo
Software Mentions: 1
Published: about 7 years ago

10.3390/nu11061265

Network Analysis of the Potential Role of DNA Methylation in the Relationship between Plasma Carotenoids and Lipid Profile
Cited by: 18
Author(s): Bénédicte L. Tremblay, Frédéric Guénard, Benoı̂t Lamarche, Louis Pérusse, Marie‐Claude Vohl
Software Mentions: 1
Published: over 7 years ago

10.1186/s13041-019-0521-9

Identification of stress resilience module by weighted gene co-expression network analysis in Fkbp5-deficient mice
Cited by: 14
Author(s): Ji-Won Kwon, Yeong Jae Kim, Kyoung Soon Choi, Sihwan Seol, Hyo Jung Kang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-00952-9

Global gene expression profiling of healthy human brain and its application in studying neurological disorders
Cited by: 49
Author(s): Simarjeet Negi, Chittibabu Guda
Software Mentions: 1
Published: over 9 years ago

10.1186/s12985-019-1231-8

Identifying novel biomarkers of the pediatric influenza infection by weighted co-expression network analysis
Cited by: 19
Author(s): Mohadeseh Zarei Ghobadi, Sayed‐Hamidreza Mozhgani, Mahdieh Farzanehpour, Farida Behzadian
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13024-016-0085-4

Frontotemporal dementia: insights into the biological underpinnings of disease through gene co-expression network analysis
Cited by: 39
Author(s): Raffaele Ferrari, Paola Forabosco, Jana Vandrovcová, Juan A. Botía, Sebastian Guelfi, Jason D. Warren, Parastoo Momeni, Michael E. Weale, Mina Ryten, John Hardy
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms21176372

Decoding Susceptibility to Respiratory Viral Infections and Asthma Inception in Children
Cited by: 11
Author(s): James F. Read, Anthony Bosco
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-00808-2

Organ-specific transcriptome profiling of metabolic and pigment biosynthesis pathways in the floral ornamental progenitor species Anthurium amnicola Dressler
Cited by: 13
Author(s): Jon Y. Suzuki, T.D. Amore, Bernarda Calla, Nathan A. Palmer, Erin D. Scully, Scott E. Sattler, Gautam Sarath, J.S. Lichty, Roxana Y. Myers, Lisa M. Keith, Tracie K. Matsumoto, Scott M. Geib
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2014.00565

Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores
Cited by: 38
Author(s): Heidi M. Appel, Howard W. Fescemyer, Jürgen Ehlting, David J. Weston, Erin MacNeal Rehrig, Trupti Joshi, Dong Xu, Jöerg Bohlmann, Jack C. Schultz
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms21175967

The Regulatory Network of CMPG1-V in Wheat–Blumeria graminis f. sp. tritici Interaction Revealed by Temporal Profiling Using RNA-Seq
Cited by: 5
Author(s): Jia Liu, Li Sun, Yiming Chen, Luyang Wei, Yongli Hao, Zhongyu Yu, Zongkuan Wang, Heng Zhang, Xu Zhang, Mengli Li, Haiyan Wang, Jin Xiao, Xiue Wang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0100690

Novel Insights into the Regulatory Architecture of CD4+ T Cells in Rheumatoid Arthritis
Cited by: 21
Author(s): Adrià Aterido, Carlos Palacio, Sara Marsal, G. Ávila, Antonio Julià
Software Mentions: 1
Published: about 12 years ago

10.7717/peerj.8843

Identification of key gene modules and hub genes of human mantle cell lymphoma by coexpression network analysis
Cited by: 12
Author(s): Dongmei Guo, Hongchun Wang, Li Sun, Shuang Liu, Shisuo Du, Wenming Qiao, Weiyan Wang, Gang Hou, Kaigang Zhang, Chunpu Li, Qingliang Teng
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0039498

A Gene Co-Expression Network in Whole Blood of Schizophrenia Patients Is Independent of Antipsychotic-Use and Enriched for Brain-Expressed Genes
Cited by: 121
Author(s): Simone de Jong, Marco P. Boks, Tova Fuller, Eric Strengman, Esther Janson, Carolien G.F. de Kovel, Anil P.S. Ori, Nancy Vi, Flip Mulder, Jan Dirk Blom, Birte Glenthøj, Chris D. Schubart, Wiepke Cahn, René S. Kahn, Steve Horvath, Roel A. Ophoff
Software Mentions: 1
Published: about 14 years ago

10.1038/s41598-017-05280-6

The integrated pathway of TGFβ/Snail with TNFα/NFκB may facilitate the tumor-stroma interaction in the EMT process and colorectal cancer prognosis
Cited by: 44
Author(s): Hui Li, Anjing Zhong, Si Li, Xianwen Meng, Xue Wang, Fangying Xu, Maode Lai
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0154330

Genome-Wide Identification of the Transcription Factors Involved in Citrus Fruit Ripening from the Transcriptomes of a Late-Ripening Sweet Orange Mutant and Its Wild Type
Cited by: 21
Author(s): Juxun Wu, Lili Fu, Hualin Yi
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2021.656637

Recovering Spatially-Varying Cell-Specific Gene Co-expression Networks for Single-Cell Spatial Expression Data
Cited by: 0
Author(s): Jianping Yu, Xiangyu Luo
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-06701-2

Characterization and expression analysis of the WRKY gene family in moso bamboo
Cited by: 34
Author(s): Long Li, Shaohua Mu, Zhanchao Cheng, Yuanwen Cheng, Ying Zhang, Ying Miao, Cheng‐Lin Hou, Xueping Li, Jian Gao
Software Mentions: 1
Published: about 9 years ago

10.3389/fphys.2019.00662

Analysis of Genes Involved in Ulcerative Colitis Activity and Tumorigenesis Through Systematic Mining of Gene Co-expression Networks
Cited by: 28
Author(s): Wu Shi, Rongjun Zou, Minglei Yang, Lei Mai, Jiangnan Ren, Ji Wen, Zhaoshi Liu, Renxu Lai
Software Mentions: 1
Published: over 7 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479