10.3389/fmicb.2015.00487

Identification of a transporter Slr0982 involved in ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803
Cited by: 25
Author(s): Yanan Zhang, Xiangfeng Niu, Mengliang Shi, Guangsheng Pei, Xiaoqing Zhang, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 11 years ago

10.3389/fmed.2020.584747

Integrating Tumor Stroma Biomarkers With Clinical Indicators for Colon Cancer Survival Stratification
Cited by: 4
Author(s): Yong Chen, Wenlong Wang, Bo Jiang, Lei Yao, Fada Xia, Xinying Li
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphar.2021.725341

An Integrated Metabolomic Study of Osteoporosis: Discovery and Quantification of Hyocholic Acids as Candidate Markers
Cited by: 13
Author(s): Dawei Deng, Pan Chen, Zeming Wu, Yanan Sun, Chang Liu, Hong Xiang, Peiyuan Yin, Dong Shang
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2020.01112

Construction and Analysis of the Tumor-Specific mRNA–miRNA–lncRNA Network in Gastric Cancer
Cited by: 27
Author(s): Xiaohao Zheng, Xiaohui Wang, Li Zheng, Hao Zhao, Wenbin Li, Bingzhi Wang, Liyan Xue, Yantao Tian, Yibin Xie
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2020.592084

Therapeutic Potential of Triptolide as an Anti-Inflammatory Agent in Dextran Sulfate Sodium-Induced Murine Experimental Colitis
Cited by: 31
Author(s): Bufu Tang, Jinyu Zhu, Baohui Zhang, Fazong Wu, Yajie Wang, Qiaoyou Weng, Shiji Fang, Zheng Lu, Yang Yang, Rongfang Qiu, Minjiang Chen, Min Xu, Zhongwei Zhao, Jiansong Ji
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2020.01070

Human Monocyte Subset Distinctions and Function: Insights From Gene Expression Analysis
Cited by: 48
Author(s): Sarah Cormican, Matthew D. Griffin
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.603337

Identifying Potential Candidate Hub Genes and Functionally Enriched Pathways in the Immune Responses to Quadrivalent Inactivated Influenza Vaccines in the Elderly Through Co-Expression Network Analysis
Cited by: 1
Author(s): Jing Yang, Jiayou Zhang, Renfeng Fan, Wei Zhao, Han Tian, Kai Duan, Xinguo Li, Peiyu Zeng, Jinglong Deng, Jikai Zhang, Xiaoming Yang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphar.2021.474267

The Advantages of Connectivity Map Applied in Traditional Chinese Medicine
Cited by: 9
Author(s): Huimin Jiang, Cheng Hu, Meijuan Chen
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.202596

Integrative analysis of exosomal microRNA-149-5p in lung adenocarcinoma
Cited by: 7
Author(s): Wen Tian, Yang He, Baosen Zhou
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-018-0325-1

Dopamine perturbation of gene co-expression networks reveals differential response in schizophrenia for translational machinery
Cited by: 7
Author(s): Mark Z. Kos, Jubao Duan, Alan R. Sanders, Lucy Blondell, Eugene Drigalenko, Melanie A. Carless, Pablo V. Gejman, Harald H.H. Göring, Mgs
Software Mentions: 1
Published: over 7 years ago

10.3389/fphar.2020.00881

Integrated PPI- and WGCNA-Retrieval of Hub Gene Signatures Shared Between Barrett's Esophagus and Esophageal Adenocarcinoma
Cited by: 54
Author(s): Asma Sindhoo Nangraj, Gurudeeban Selvaraj, Satyavani Kaliamurthi, Aman Chandra Kaushik, William C. Cho, Dong Wei
Software Mentions: 1
Published: about 6 years ago

10.1186/s12920-018-0407-1

Identification of glioblastoma gene prognosis modules based on weighted gene co-expression network analysis
Cited by: 32
Author(s): Pengfei Xu, Jian Yang, Junhui Liu, Yang Xue, Jianming Liao, Fanen Yuan, Yang Xu, Baohui Liu
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12920-020-0702-5

Gene co-expression networks are associated with obesity-related traits in kidney transplant recipients
Cited by: 4
Author(s): Rosario B. Jaime-Lara, Abhrarup Roy, Yupeng Wang, Ansley Grimes Stanfill, Ann K. Cashion, Paule V. Joseph
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.01281

Identification of Immune-Related Genes Contributing to the Development of Glioblastoma Using Weighted Gene Co-expression Network Analysis
Cited by: 30
Author(s): Yahui Kong, Zichao Feng, Yulin Zhang, Xiaofei Liu, Yuan Ma, Zhimin Zhao, Bin Huang, An-Jing Chen, Di Zhang, Frits Thorsen, Jian Wang, Ning Yang, Xingang Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s12920-015-0098-9

Co-expression network of neural-differentiation genes shows specific pattern in schizophrenia
Cited by: 39
Author(s): Mariana Maschietto, Ana Carolina Tahira, Renato Puga, Leandro Lima, Daniel Mariani, Bruna Paulsen, Paulo Belmonte-de-Abreu, Henrique Cursino Vieira, Ana Cristina Victorino Krepischi, Dirce Maria Carraro, Joana Almeida Palha, Stevens K. Rehen, Helena Brentani
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2021.730300

Integration of Molecular Inflammatory Interactome Analyses Reveals Dynamics of Circulating Cytokines and Extracellular Vesicle Long Non-Coding RNAs and mRNAs in Heroin Addicts During Acute and Protracted Withdrawal
Cited by: 7
Author(s): Zunyue Zhang, Hongjin Wu, Qingyan Peng, Zhenrong Xie, Fengrong Chen, Yuru Ma, Yizhi Zhang, Yong Zhou, Jun Yang, Cheng Chen, Shaoyou Li, Yongjin Zhang, Wen Tian, Yuan Wang, Yu Xu, Huayou Luo, Mei Zhu, Yi‐Qun Kuang, Juehua Yu, Kunhua Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.00616

A Signaling Pathway to Mediate the Combined Immunomodulation of Acetylcholine and Enkephalin in Oyster Crassostrea gigas
Cited by: 3
Author(s): Zhaoqun Liu, Zhi Zhou, Lingling Wang, Yukun Zhang, Yanan Zong, Yan Zheng, Meijia Li, Weilin Wang, Linsheng Song
Software Mentions: 1
Published: over 6 years ago

10.1186/1755-8794-7-51

Genetic network identifies novel pathways contributing to atherosclerosis susceptibility in the innominate artery
Cited by: 9
Author(s): Jody Albright, Pamela M. Quizon, Aldons J. Lusis, Brian J. Bennett
Software Mentions: 1
Published: about 12 years ago

10.3389/fimmu.2020.01194

Expression of S100A Alarmins in Cord Blood Monocytes Is Highly Associated With Chorioamnionitis and Fetal Inflammation in Preterm Infants
Cited by: 12
Author(s): Veronika Golubinskaya, Henri Puttonen, Ing‐Marie Fyhr, Halfdan Rydbeck, Ann Hellström, Bo Jacobsson, Holger Nilsson, Carina Mallard, Karin Sävman
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2017.00594

Murine Myocardial Transcriptome Analysis Reveals a Critical Role of COPS8 in the Gene Expression of Cullin-RING Ligase Substrate Receptors and Redox and Vesicle Trafficking Pathways
Cited by: 7
Author(s): Ammara Abdullah, Kathleen M. Eyster, Travis Bjordahl, Xiao Peng, Erliang Zeng, Xuejun Wang
Software Mentions: 1
Published: about 9 years ago

10.3389/fphys.2020.623190

Transcriptomic Coupling of PKP2 With Inflammatory and Immune Pathways Endogenous to Adult Cardiac Myocytes
Cited by: 11
Author(s): Marta Pérez-Hernández, Grecia M Marrón-Liñares, Florencia Schlamp, Adriana Heguy, Chantal J.M. van Opbergen, Valeria Mezzano, Mingliang Zhang, Feng-Xia Liang, Marina Cerrone, Mario Delmar
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2017.00822

Alternation of Gut Microbiota in Patients with Pulmonary Tuberculosis
Cited by: 102
Author(s): Moulun Luo, Yong Liu, Pengfei Wu, Dongxia Luo, Qun Sun, Han Zheng, Richard Hu, Stephen J. Pandol, Qingfeng Li, Yuan‐Ping Han, Yilan Zeng
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12916-020-01741-4

Postpartum plasma metabolomic profile among women with preeclampsia and preterm delivery: implications for long-term health
Cited by: 10
Author(s): Xiumei Hong, Boyang Zhang, Liming Liang, Yan Zhang, Yuelong Ji, Guoying Wang, Hongkai Ji, Clary B. Clish, Irina Burd, Colleen Pearson, Barry Zuckerman, Frank B. Hu, Xiaobin Wang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41398-019-0492-8

Postmortem transcriptional profiling reveals widespread increase in inflammation in schizophrenia: a comparison of prefrontal cortex, striatum, and hippocampus among matched tetrads of controls with subjects diagnosed with schizophrenia, bipolar or major depressive disorder
Cited by: 107
Author(s): Thomas A. Lanz, Veronica Reinhart, Mark J. Sheehan, Stacey J. Sukoff Rizzo, Susan E. Bove, Larry C. James, Dmitri Volfson, David A. Lewis, Robin J. Kleiman
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.739514

Circulating Metabolomic Signature in Generalized Pustular Psoriasis Blunts Monocyte Hyperinflammation by Triggering Amino Acid Response
Cited by: 7
Author(s): Na Yu, Peng Chen, Wenjuan Chen, Zengqi Sun, Jianfeng Zheng, Shujie Zhang, Yangfeng Ding, Yujun Shi
Software Mentions: 1
Published: about 5 years ago

10.1515/med-2021-0286

A nomogram for predicting metabolic steatohepatitis: The combination of NAMPT, RALGDS, GADD45B, FOSL2, RTP3, and RASD1
Cited by: 4
Author(s): Shenling Liao, He He, Yuping Zeng, Yang Lin-de, Zhi Liu, Zhenmei An, Mei Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.00402

Transcriptional Analysis of the Human IgE-Expressing Plasma Cell Differentiation Pathway
Cited by: 10
Author(s): Faruk Ramadani, H. J. M. Bowen, Hannah Gould, David Fear
Software Mentions: 1
Published: over 7 years ago

10.3389/fphys.2018.01841

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis
Cited by: 7
Author(s): Amnah Siddiqa, Elisa Cirillo, Samar Tareen, Amjad Ali, Martina Kutmon, Lars Eijssen, Jamil Ahmad, Chris T. Evelo, Susan L. Coort
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2019.01459

A Combined Transcriptomic and Genomic Analysis Identifies a Gene Signature Associated With the Response to Anti-TNF Therapy in Rheumatoid Arthritis
Cited by: 22
Author(s): Adrià Aterido, Juan D. Cañete, Jesús Tornero, Francisco J. Blanco, Benjamín Fernández‐Gutiérrez, Carolina Pérez, Mercedes Alperi-López, A Olivé, Hèctor Corominas, Víctor M. Martínez‐Taboada, Inmaculada Fernández González, Antonio Fernández‐Nebro, Alba Erra, María López-Lasanta, Mireia López-Corbeto, Núria Palau, Sara Marsal, Antonio Julià
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2020.01795

Multiple Processes May Involve in the IgG4-RD Pathogenesis: An Integrative Study via Proteomic and Transcriptomic Analysis
Cited by: 8
Author(s): Shaozhe Cai, Yu Chen, Shaochong Lin, Cong Ye, Fang Zheng, Lingli Dong
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2019.00275

Identification of the Biomarkers and Pathological Process of Osteoarthritis: Weighted Gene Co-expression Network Analysis
Cited by: 36
Author(s): Hao Gu, Min Yang, Jia Guo, Zhang Chao, Lu-Lu Lin, Yang Liu, Renxiong Wei
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.702733

Transcriptome Analysis of CCR9+ T Helper Cells From Primary Sjögren’s Syndrome Patients Identifies CCL5 as a Novel Effector Molecule
Cited by: 8
Author(s): Anneline C. Hinrichs, Sofie L M Blokland, Ana P Lopes, Catharina G K Wichers, Aike A. Kruize, Aridaman Pandit, Timothy R D J Radstake, Joël A G van Roon
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.624614

Predicted Disease-Specific Immune Infiltration Patterns Decode the Potential Mechanisms of Long Non-Coding RNAs in Primary Sjogren’s Syndrome
Cited by: 6
Author(s): Caiqi Cheng, Jun Zhou, Ruiying Chen, Yo Shibata, Ryouichi Tanaka, Jun Wang, Jiaming Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.659193

SDF4 Is a Prognostic Factor for 28-Days Mortality in Patients With Sepsis via Negatively Regulating ER Stress
Cited by: 10
Author(s): Tingting Zhu, Qun Su, Cuili Wang, Lingling Shen, Hongjun Chen, Shi Feng, Xing Peng, Siyu Chen, Yucheng Wang, Hong Jiang, Jianghua Chen
Software Mentions: 1
Published: about 5 years ago

10.1038/s41398-019-0486-6

Dysregulation of a specific immune-related network of genes biologically defines a subset of schizophrenia
Cited by: 21
Author(s): Svenja V. Trossbach, Laura Hecher, David Schafflick, René Deenen, Ovidiu Popa, Tobias Lautwein, Sarah K. Tschirner, Karl Köhrer, Karin Fehsel, Irina Papazova, Berend Malchow, Alkomiet Hasan, Georg Winterer, Aurore Schmitt, Gerd Meyer zu Hörste, Peter Falkai, Carsten Korth
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2020.00857

Identification of Gene Signatures for Diagnosis and Prognosis of Hepatocellular Carcinomas Patients at Early Stage
Cited by: 14
Author(s): Xiaoning Gan, Yue Luo, Guanqi Dai, Junhao Lin, Xinhui Liu, Zhang Xiang-qun, Aimin Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-018-4999-9

Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)
Cited by: 57
Author(s): Yuling Tai, Liu Chun, Shijie Yu, Hua Yang, Jun Sun, Chunxiao Guo, Bei Huang, Zhaoye Liu, Yuan Yang, Enhua Xia, Chaoling Wei, Xiaochun Wan
Software Mentions: 1
Published: about 8 years ago

10.1186/s13023-016-0475-2

Common disease signatures from gene expression analysis in Huntington’s disease human blood and brain
Cited by: 26
Author(s): Eleni Mina, Willeke van Roon-Mom, Kristina Hettne, Erik W. van Zwet, Jelle J. Goeman, Christian Néri, Peter A.C. ’t Hoen, Barend Mons, Marco Roos
Software Mentions: 1
Published: about 10 years ago

10.3389/fgene.2020.00981

Identification of KIAA0513 and Other Hub Genes Associated With Alzheimer Disease Using Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Min Zhu, Longfei Jia, Fangyu Li, Jianping Jia
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2018.00102

Identification and Functional Analysis of Long Intergenic Non-coding RNAs Underlying Intramuscular Fat Content in Pigs
Cited by: 25
Author(s): Cheng Zou, Li Long, Xiangdong Cheng, Cencen Li, Yuhua Fu, Fang Cui, Changchun Li
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-021-07714-y

Transcriptomic insights into the effects of CytCo, a novel nematotoxic protein, on the pine wood nematode Bursaphelenchus xylophilus
Cited by: 4
Author(s): Ye Chen, Xiang Zhou, Kai Guo, Sha-Ni Chen, Xiu Su
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-019-0584-5

Gene network analysis reveals a role for striatal glutamatergic receptors in dysregulated risk-assessment behavior of autism mouse models
Cited by: 9
Author(s): Oded Oron, Dmitriy Getselter, Shahar Shohat, Eli Reuveni, Iva Lukić, Sagiv Shifman, Evan Elliott
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-021-07368-w

De novo transcriptome in roots of switchgrass (Panicum virgatum L.) reveals gene expression dynamic and act network under alkaline salt stress
Cited by: 22
Author(s): Pan Zhang, Tianqi Duo, Fengdan Wang, Xunzhong Zhang, Zouzhuan Yang, Guofu Hu
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00378

Coexpression Analysis Reveals Dynamic Modules Regulating the Growth and Development of Cirri in the Rattans (Calamus simplicifolius and Daemonorops jenkinsiana)
Cited by: 4
Author(s): Jiongliang Wang, Xuelian Ma, Jiaotong Yang, Yanan Hui, Jiajie She, Tian Tian, Zhongqiu Li, Wenying Xu, Zhimin Gao, Zhen Su, Hansheng Zhao
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.00342

Identification of Crucial Genes Associated With Immune Cell Infiltration in Hepatocellular Carcinoma by Weighted Gene Co-expression Network Analysis
Cited by: 42
Author(s): Dengchuan Wang, Jun Li, Shengshuo Liu, Wenli Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.01408

Identification of Prognostic Genes in Leiomyosarcoma by Gene Co-Expression Network Analysis
Cited by: 4
Author(s): Jun Yang, Cuili Li, Jianyi Zhou, Xiaoquan Liu, Shaohua Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-1056

Metabolic and co-expression network-based analyses associated with nitrate response in rice
Cited by: 40
Author(s): Viktoriya Coneva, Caitlin M. A. Simopoulos, José A. Casaretto, Ashraf El-Kereamy, David Guevara, Jonathan Cohn, Tong Zhu, Lining Guo, Danny Alexander, Yong‐Mei Bi, Paul D. McNicholas, Steven J. Rothstein
Software Mentions: 1
Published: almost 12 years ago

10.3389/fphys.2019.00662

Analysis of Genes Involved in Ulcerative Colitis Activity and Tumorigenesis Through Systematic Mining of Gene Co-expression Networks
Cited by: 28
Author(s): Wu Shi, Rongjun Zou, Minglei Yang, Lei Mai, Jiangnan Ren, Ji Wen, Zhaoshi Liu, Renxu Lai
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.19828

Identification of long non-coding RNA signature for paclitaxel-resistant patients with advanced ovarian cancer
Cited by: 15
Author(s): Luqing Wang, Yan-Jun Hu, Xiaohong Xiang, Kai Qu, Yue Teng
Software Mentions: 1
Published: about 9 years ago

10.1038/s41398-020-00907-1

Adult mouse hippocampal transcriptome changes associated with long-term behavioral and metabolic effects of gestational air pollution toxicity
Cited by: 20
Author(s): Amin Haghani, Richard G. Johnson, Nick Woodward, Jason I. Feinberg, Kristy Lewis, Christine Ladd‐Acosta, Nikoo Safi, Andrew E. Jaffe, Constantinos Sioutas, Hooman Allayee, Daniel B. Campbell, Heather E. Volk, Caleb E. Finch, Todd E. Morgan
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2018.00137

A Systems Biology Study in Tomato Fruit Reveals Correlations between the Ascorbate Pool and Genes Involved in Ribosome Biogenesis, Translation, and the Heat-Shock Response
Cited by: 9
Author(s): Rebecca Stevens, Piérre Baldet, Jean‐Paul Bouchet, Mathilde Causse, Catherine Deborde, Claire Deschodt, Mireille Faurobert, Cécile Garchery, Virginie Garcia, Hélène Gautier, Barbara Gouble, Mickaël Maucourt, Annick Moing, David L. Page, J. Petit, Jean‐Luc Poëssel, Vincent Truffault, Christophe Rothan
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2021.695399

Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution
Cited by: 14
Author(s): Katie Ovens, B. Frank Eames, Ian McQuillan
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.00764

Comprehensive Construction of a Circular RNA-Associated Competing Endogenous RNA Network Identified Novel Circular RNAs in Hypertrophic Cardiomyopathy by Integrated Analysis
Cited by: 14
Author(s): Qi Guo, Junjie Wang, Rong Sun, Zhijian He, Qian Chen, Wenhao Liu, Maoxiong Wu, Jigang Bao, Zhaoyu Liu, Jingfeng Wang, Yuling Zhang
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2019.00874

Data Integration in Poplar: ‘Omics Layers and Integration Strategies
Cited by: 13
Author(s): Deborah Weighill, Timothy J. Tschaplinski, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41398-020-01007-w

Gene co-expression networks in peripheral blood capture dimensional measures of emotional and behavioral problems from the Child Behavior Checklist (CBCL)
Cited by: 2
Author(s): Jonathan Hess, Nicholas Nguyen, Jesse Suben, Ryan M Meath, Avery B. Albert, Sarah Van Orman, Kristin M. Anders, Patricia Forken, Cheryl Roe, Thomas G. Schulze, Stephen V. Faraone, Stephen J. Glatt
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2021.608017

Identification of Core Genes Related to Progression and Prognosis of Hepatocellular Carcinoma and Small-Molecule Drug Predication
Cited by: 5
Author(s): Nan Jiang, Xinzhuo Zhang, Da‐Lian Qin, Jing Yang, Anguo Wu, Long Wang, Yueshan Sun, Hong Li, Xianfeng Shen, Jing Lin, Fahsai Kantawong, Jianming Wu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-5098-7

Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density
Cited by: 36
Author(s): Amy Ellison, Tamsyn M. Uren Webster, Olivier Rey, Carlos García de Leániz, Sofía Consuegra, Pablo Orozco‐terWengel, Joanne Cable
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-019-6418-2

De novo sequencing of the transcriptome reveals regulators of the floral transition in Fargesia macclureana (Poaceae)
Cited by: 8
Author(s): Ying Liu, Chunxia Zhang, Kebin Yang, Jingjing Shi, Yulong Ding, Zhimin Gao
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2014.00565

Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores
Cited by: 38
Author(s): Heidi M. Appel, Howard W. Fescemyer, Jürgen Ehlting, David J. Weston, Erin MacNeal Rehrig, Trupti Joshi, Dong Xu, Jöerg Bohlmann, Jack C. Schultz
Software Mentions: 1
Published: almost 12 years ago

10.3389/fgene.2018.00508

Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response
Cited by: 32
Author(s): Alexandra Maertens, Vy Tran, André Kleensang, Thomas Hartung
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-018-5358-6

Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii
Cited by: 20
Author(s): Fei Tian, Sijia Liu, Jianquan Shi, Hongfang Qi, Kai Zhao, Bin Xie
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.624319

Grafting Delays Watermel on Fruit Ripening by Altering Gene Expression of ABA Centric Phytohormone Signaling
Cited by: 5
Author(s): Sheng Guo, Honghe Sun, Jiaxing Tian, Guoyu Zhang, Guoyi Gong, Yi Ren, Jie Zhang, Maoying Li, Haiying Zhang, Haizhen Li, Yong Xu
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.616338

Interspecific Variation in the Unsaturation Level of Seed Oils Were Associated With the Expression Pattern Shifts of Duplicated Desaturase Genes and the Potential Role of Other Regulatory Genes
Cited by: 3
Author(s): Mengli Wang, Lexuan Gao, Gengyun Li, Chengchuan Zhou, Jinjing Jian, Zhen Xing, Yuguo Wang, Wenju Zhang, Song Zhang, Yonghong Hu, Ji Hyun Yang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.528108

Comparative Genomics of Spatholobus suberectus and Insight Into Flavonoid Biosynthesis
Cited by: 5
Author(s): Shuangshuang Qin, Kunhua Wei, Zhan-Hu Cui, Ying Liang, Mingjie Li, Li Gu, Chuyun Yang, Xiaolei Zhou, Linxuan Li, Wei Xü, Can Liu, Miao Jin, Zhongyi Zhang
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2019.01398

Identification of the Key Factors Related to Bladder Cancer by lncRNA-miRNA-mRNA Three-Layer Network
Cited by: 13
Author(s): Xiaoxia Wang, Yanrui Ding, Jie Wang, Yanyan Wu
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2018.00406

De novo Mutations (DNMs) in Autism Spectrum Disorder (ASD): Pathway and Network Analysis
Cited by: 37
Author(s): Aitana Alonso-González, Cristina Rodríguez-Fontenla, Ángel Carracedo
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2021.615284

Comparative Analyses of Full-Length Transcriptomes Reveal Gnetum luofuense Stem Developmental Dynamics
Cited by: 7
Author(s): Chen Hou, Huiming Lian, Yanling Cai, Yingli Wang, Dongcheng Liang, Boxiang He
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.680120

Transcriptome Co-expression Network Analysis Identifies Key Genes Regulating Conchosporangia Maturation of Pyropia haitanensis
Cited by: 3
Author(s): Yi-Sheng Lin, Kai Xu, Yan Xu, Dehua Ji, Changsheng Chen, Wenlei Wang, Chaotian Xie
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2015.00829

Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach
Cited by: 16
Author(s): Wenchuan Xie, Junfeng Huang, Yang Liu, Rao Jianan, Da Luo, Miao He
Software Mentions: 1
Published: almost 11 years ago

10.3389/fgene.2021.695625

Translational Proteomics Analysis of Anthracycline-Induced Cardiotoxicity From Cardiac Microtissues to Human Heart Biopsies
Cited by: 11
Author(s): Nhan Nguyen, Tancredo Augusto Feitosa de Souza, Marcha Verheijen, Hans Gmuender, Nathalie Selevsek, Ralph Schlapbach, Jos Kleinjans, Danyel Jennen
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-14-825

Genome-wide transcriptional analysis of T cell activation reveals differential gene expression associated with psoriasis
Cited by: 24
Author(s): Núria Palau, Antonio Julià, Carlos Ferrándiz, Lluís Puig, Eduardo Fonseca, Enrique Vega Fernández, María López-Lasanta, Raül Tortosa, Sara Marsal
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-020-6654-5

Transcriptomic profiling of Solanum peruvianum LA3858 revealed a Mi-3-mediated hypersensitive response to Meloidogyne incognita
Cited by: 11
Author(s): Chong Du, Jingbin Jiang, He Zhang, Tingting Zhao, Huanhuan Yang, Dongye Zhang, Zhentong Zhao, Xiangyang Xu, Jin-Fu Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.01359

Transcriptome Changes of Mycobacterium marinum in the Process of Resuscitation From Hypoxia-Induced Dormancy
Cited by: 6
Author(s): Jun Jiang, Lin Chen, Junli Zhang, Yuchen Wang, Lianfang Shen, Kun Yang, Wenjun Xiao, Li Yao, Lu Zhang, Jun Liu
Software Mentions: 1
Published: over 6 years ago

10.3389/fendo.2020.570604

Immune Cell Confrontation in the Papillary Thyroid Carcinoma Microenvironment
Cited by: 56
Author(s): Zhenyu Xie, Xin Li, Yuzhen He, Song Wu, Shiyue Wang, Jing Sun, Yuchen He, Yu Lun, Jian Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fendo.2021.666393

METTL3 Is Involved in the Development of Graves’ Disease by Inducing SOCS mRNA m6A Modification
Cited by: 6
Author(s): Ronghua Song, Peng Du, Chaoqun Gao, Xuerong Liu, Jinan Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fendo.2020.00272

Characteristics of the Urinary Microbiome From Patients With Gout: A Prospective Study
Cited by: 15
Author(s): Y.N. Ning, Ge Yang, Yangchun Chen, Xue Qiang Zhao, Hongyan Qian, Yuan Liu, Shiju Chen, Guixiu Shi
Software Mentions: 1
Published: over 6 years ago

10.3389/fendo.2018.00500

The Implications of Vitamin D Status During Pregnancy on Mother and her Developing Child
Cited by: 79
Author(s): Carol L. Wagner, Bruce W. Hollis
Software Mentions: 1
Published: about 8 years ago

10.3389/fncel.2020.595607

Comprehensive Profiling of Gene Expression in the Cerebral Cortex and Striatum of BTBRTF/ArtRbrc Mice Compared to C57BL/6J Mice
Cited by: 8
Author(s): Shota Mizuno, Jun Na Hirota, Chiaki Ishii, Hirohide Iwasaki, Yoshitake Sano, Teiichi Furuichi
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.604849

Network Analysis Combining Proteomics and Metabolomics Reveals New Insights Into Early Responses of Eucalyptus grandis During Rust Infection
Cited by: 11
Author(s): Alline Sekiya, Felipe Garbelini Marques, Thiago Falda Leite, Thaís Regiani Cataldi, Fabrício Edgar de Moraes, Ana Lúcia Mendes Pinheiro, Mônica Teresa Veneziano Labate, Carlos Alberto Labate
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2019.00346

Identification of Gut Microbiota and Metabolites Signature in Patients With Irritable Bowel Syndrome
Cited by: 33
Author(s): Shengtao Zhu, Si Liu, Hengcun Li, Zheng Zhang, Qian Zhang, Lei Chen, Yu Zhao, Yang Chen, Jiafeng Gu, Li Min, Shutian Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-11-161

Functional annotation of novel lineage-specific genes using co-expression and promoter analysis
Cited by: 8
Author(s): Charu G. Kumar, Robin E. Everts, Juan J. Loor, Harris A. Lewin
Software Mentions: 1
Published: over 16 years ago

10.1038/s41398-021-01536-y

Genome-wide DNA methylation and gene expression analyses in monozygotic twins identify potential biomarkers of depression
Cited by: 28
Author(s): Weijing Wang, Weilong Li, Yili Wu, Xiaocao Tian, Haiping Duan, Shuxia Li, Qihua Tan, Dongfeng Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2021.705321

A Tissue-Specific Landscape of Alternative Polyadenylation, lncRNAs, TFs, and Gene Co-expression Networks in Liriodendron chinense
Cited by: 9
Author(s): Zhonghua Tu, Yu-Fang Shen, Shaoying Wen, Huanhuan Liu, Lingmin Wei, Huogen Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fcimb.2018.00307

Gene Expression Signatures Can Aid Diagnosis of Sexually Transmitted Infection-Induced Endometritis in Women
Cited by: 15
Author(s): Xiaojing Zheng, Catherine M. O’Connell, Wujuan Zhong, Taylor B. Poston, Harold C. Wiesenfeld, Sharon L. Hillier, Maria Trent, Charlotte A. Gaydos, George C. Tseng, Brandie D. Taylor, Toni Darville
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2017.00092

De novo Transcriptome Assembly of Chinese Kale and Global Expression Analysis of Genes Involved in Glucosinolate Metabolism in Multiple Tissues
Cited by: 19
Author(s): Shi-Fang Wu, Jing Liu, Guoju Chen, Hancai Chen, Bihao Cao, Changming Chen
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-019-5777-z

Differential expression of innate and adaptive immune genes in the survivors of three gibel carp gynogenetic clones after herpesvirus challenge
Cited by: 17
Author(s): Wei-Jia Lu, Fan-Xiang Gao, Yan Wang, Qi-Ya Zhang, Zhi Li, Xiaojuan Zhang, Li Zhou, Jian‐Fang Gui
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2021.686547

RPL19 Is a Prognostic Biomarker and Promotes Tumor Progression in Hepatocellular Carcinoma
Cited by: 6
Author(s): Benchen Rao, Jianhao Li, Tong Ren, Jing Yang, Guizhen Zhang, Liwen Liu, Ang Li, Mengling Huang, Zhigang Ren, Zujiang Yu
Software Mentions: 1
Published: about 5 years ago

10.1007/s12975-020-00869-y

Molecular Correlates of Hemorrhage and Edema Volumes Following Human Intracerebral Hemorrhage Implicate Inflammation, Autophagy, mRNA Splicing, and T Cell Receptor Signaling
Cited by: 21
Author(s): Marc Durocher, Bodie Knepp, Alan Yee, Glen C. Jickling, Fernando Rodríguez Rodríguez, Kwan Ng, Xinhua Zhan, Farah Hamade, Eva Ferino, Hajar Amini, Paulina Carmona-Mora, Heather Hull, Bradley P. Ander, Frank R. Sharp, Boryana Stamova
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2017.01371

Phenotypic and Comparative Transcriptome Analysis of Different Ploidy Plants in Dendrocalamus latiflorus Munro
Cited by: 11
Author(s): Guirong Qiao, Mingying Liu, Kunlin Song, Haiying Li, Haiming Yang, Yafang Yin, Renying Zhuo
Software Mentions: 1
Published: about 9 years ago

10.3389/fcell.2021.653528

Comprehensive Analysis Reveals the Potential Regulatory Mechanism Between Ub–Proteasome System and Cell Cycle in Colorectal Cancer
Cited by: 1
Author(s): Zhiyuan Zhang, Jingwen Chen, Wentao Tang, Qi Sheng Feng, Jiacheng Xu, Ren Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.608367

Sall4 and Myocd Empower Direct Cardiac Reprogramming From Adult Cardiac Fibroblasts After Injury
Cited by: 10
Author(s): Hong Zhao, Yi Zhang, Xinmin Xu, Qixin Sun, Caiqiong Yang, Hao Wang, Junbo Yang, Yang Yang, Xiaochun Yang, Yi Liu, Yang Zhao
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.592616

Functional Gene Expression Differentiation of the Notch Signaling Pathway in Female Reproductive Tract Tissues—A Comprehensive Review With Analysis
Cited by: 9
Author(s): Magdalena Orzechowska, Dorota Anusewicz, Andrzej K. Bednarek
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2021.668736

Comparison of Transcriptional Response of C3 and C4 Plants to Drought Stress Using Meta-Analysis and Systems Biology Approach
Cited by: 7
Author(s): Ahmad Tahmasebi, Ali Niazi‎
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.639615

Establishment of Novel DNA Methylation-Based Prostate Cancer Subtypes and a Risk-Predicting Eight-Gene Signature
Cited by: 3
Author(s): Enchong Zhang, Fujisawa Shiori, Oscar YongNan Mu, Jieqian He, Yuntian Ge, Hongliang Wu, Mo Zhang, Yi Song
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2018.01139

The Galling Truth: Limited Knowledge of Gall-Associated Volatiles in Multitrophic Interactions
Cited by: 13
Author(s): Renée M. Borges
Software Mentions: 1
Published: about 8 years ago

10.3389/fcell.2019.00200

The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections
Cited by: 18
Author(s): Hugh D. Mitchell, Amie J. Eisfeld, Kelly G. Stratton, Natalie C. Heller, Lisa Bramer, Ji Wen, Jason McDermott, Lisa E. Gralinski, Amy C. Sims, Mai Quynh Le, Ralph S. Baric, Yoshihiro Kawaoka, Katrina M. Waters
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcell.2020.598660

Construction of a Five-Super-Enhancer-Associated-Genes Prognostic Model for Osteosarcoma Patients
Cited by: 11
Author(s): Zhanbo Ouyang, Guohua Li, Haihong Zhu, Jiaojiao Wang, Tingting Qi, Qiang Qu, Chao Tu, Jian Qu, Qiong Lu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2021.656636

LncRNA Landscape of Coronary Atherosclerosis Reveals Differentially Expressed LncRNAs in Proliferation and Migration of Coronary Artery Smooth Muscle Cells
Cited by: 6
Author(s): Yaqing Zhou, Sheng Zhang, Wenfeng Ji, Xiongkang Gan, Hua Liu, Can Hou, Jiaxin Chen, Yanjun Wang, Shu He, Hongliang Zhou, En-Zhi Jia
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-14-112

Cross-species transcriptional network analysis reveals conservation and variation in response to metal stress in cyanobacteria
Cited by: 31
Author(s): Jiangxin Wang, Gang Wu, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 13 years ago

10.3389/fcell.2020.630790

Identification of IL10RA by Weighted Correlation Network Analysis and in vitro Validation of Its Association With Prognosis of Metastatic Melanoma
Cited by: 7
Author(s): Siyuan Cheng, Zhe Li, Wenhao Zhang, Zhiqiang Sun, Zhipeng Fan, Judong Luo, Hui Liu
Software Mentions: 1
Published: over 5 years ago