cran: WGCNA | Projects | Ecosyste.ms: Papers

10.3389/fpls.2015.00829

Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach
Cited by: 16
Author(s): Wenchuan Xie, Junfeng Huang, Yang Liu, Rao Jianan, Da Luo, Miao He
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12872-021-01973-z

Comparative transcriptome analysis of transcripts of uncertain coding potential in septic myocardial depression
Cited by: 1
Author(s): Tie-Ning Zhang, Ri Wen, Ni Yang, Chunfeng Liu
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0224497

Characterization of the placental transcriptome through mid to late gestation in the mare
Cited by: 13
Author(s): Shavahn C. Loux, Pouya Dini, Hesham A. Ali, Theodore S. Kalbfleisch, Barry A. Ball
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50909-3

Proteomic analysis of eleven tissues in the Chinese giant salamander (Andrias davidianus)
Cited by: 5
Author(s): Xiaofang Geng, Jiuxin Guo, Xiayan Zang, Cuifang Chang, Haitao Shang, Hong Wei, Chi Xu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-53052-1

Products of Chemoenzymatic Synthesis Representing MUC1 Tandem Repeat Unit with T-, ST- or STn-antigen Revealed Distinct Specificities of Anti-MUC1 Antibodies
Cited by: 23
Author(s): Yayoi Yoshimura, Kaori Denda-Nagai, Yoshie Takahashi, Izuru Nagashima, H. Shimizu, Toshimitsu Kishimoto, Miki Noji, Shigeyuki Shichino, Yasunori Chiba, Tatsuro Irimura
Software Mentions: 1
Published: over 5 years ago

10.1186/s12872-021-02211-2

Identification of key miRNAs and mRNAs related to coronary artery disease by meta-analysis
Cited by: 3
Author(s): Long Liu, Jingze Zhang, Mei Yi Wu, Haiming Xu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.686547

RPL19 Is a Prognostic Biomarker and Promotes Tumor Progression in Hepatocellular Carcinoma
Cited by: 6
Author(s): Benchen Rao, Jianhao Li, Tong Ren, Jing Yang, Guizhen Zhang, Liwen Liu, Ang Li, Mengling Huang, Zhigang Ren, Zujiang Yu
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21207695

Multiple-Purpose Connectivity Map Analysis Reveals the Benefits of Esculetin to Hyperuricemia and Renal Fibrosis
Cited by: 9
Author(s): Yiming Wang, Jie Zhu, Liang Wang, Tianyu Zhang, Baoxin Huang, Jia Meng, Baoxue Yang, Zhengwei Xie, Hong Zhou
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21196994

Transcriptome Sequencing Revealed an Inhibitory Mechanism of Aspergillus flavus Asexual Development and Aflatoxin Metabolism by Soy-Fermenting Non-Aflatoxigenic Aspergillus
Cited by: 9
Author(s): Ke Yang, Qingru Geng, Fengqin Song, Xiaona He, Tianran Hu, Shihua Wang, Jun Tian
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcell.2021.653528

Comprehensive Analysis Reveals the Potential Regulatory Mechanism Between Ub–Proteasome System and Cell Cycle in Colorectal Cancer
Cited by: 1
Author(s): Zhiyuan Zhang, Jingwen Chen, Wentao Tang, Qi Sheng Feng, Jiacheng Xu, Ren Li
Software Mentions: 1
Published: about 4 years ago

10.3389/fpls.2020.604849

Network Analysis Combining Proteomics and Metabolomics Reveals New Insights Into Early Responses of Eucalyptus grandis During Rust Infection
Cited by: 11
Author(s): Alline Sekiya, Felipe Garbelini Marques, Thiago Falda Leite, Thaís Regiani Cataldi, Fabrício Edgar de Moraes, Ana Lúcia Mendes Pinheiro, Mônica Teresa Veneziano Labate, Carlos Alberto Labate
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.608367

Sall4 and Myocd Empower Direct Cardiac Reprogramming From Adult Cardiac Fibroblasts After Injury
Cited by: 10
Author(s): Hong Zhao, Yi Zhang, Xinmin Xu, Qixin Sun, Caiqiong Yang, Hao Wang, Junbo Yang, Yang Yang, Xiaochun Yang, Yi Liu, Yang Zhao
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-52883-2

Comprehensive Analysis of the Expression Profiles of Long Non-Coding RNAs with Associated ceRNA Network Involved in the Colon Cancer Staging and Progression
Cited by: 14
Author(s): Man‐Li C. Wu, Wenliang Li, Fengchang Huang, Jing Sun, Kang ping Li, Jiandong Shi, Jingyu Yang, Jianfang Li, Yanhan Li, Ningzhu Hu, Yunzhang Hu
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.19490

Using molecular functional networks to manifest connections between obesity and obesity-related diseases
Cited by: 6
Author(s): Jialiang Yang, Jing Qiu, Kejing Wang, Lijuan Zhu, Jingjing Fan, De-Yin Zheng, Xiaodi Meng, Jiasheng Yang, Lihong Peng, Yu Fu, Dahan Zhang, Shouneng Peng, Haiyun Huang, Yi Zhang
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2021.705321

A Tissue-Specific Landscape of Alternative Polyadenylation, lncRNAs, TFs, and Gene Co-expression Networks in Liriodendron chinense
Cited by: 9
Author(s): Zhonghua Tu, Yu-Fang Shen, Shaoying Wen, Huanhuan Liu, Lingmin Wei, Huogen Li
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2020.592616

Functional Gene Expression Differentiation of the Notch Signaling Pathway in Female Reproductive Tract Tissues—A Comprehensive Review With Analysis
Cited by: 9
Author(s): Magdalena Orzechowska, Dorota Anusewicz, Andrzej K. Bednarek
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2017.00092

De novo Transcriptome Assembly of Chinese Kale and Global Expression Analysis of Genes Involved in Glucosinolate Metabolism in Multiple Tissues
Cited by: 19
Author(s): Shi-Fang Wu, Jing Liu, Guoju Chen, Hancai Chen, Bihao Cao, Changming Chen
Software Mentions: 1
Published: over 8 years ago

10.1155/2020/5478574

The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
Cited by: 18
Author(s): Hao Ding, Xiao-Xing Xiong, Guanlan Fan, Yuexiong Yi, Yurou Chen, Jingtao Wang, Wei Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.639615

Establishment of Novel DNA Methylation-Based Prostate Cancer Subtypes and a Risk-Predicting Eight-Gene Signature
Cited by: 3
Author(s): Enchong Zhang, Fujisawa Shiori, Oscar YongNan Mu, Jieqian He, Yuntian Ge, Hongliang Wu, Mo Zhang, Yi Song
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.22181

Identification of differentially expressed genes, lncRNAs and miRNAs which are associated with tumor malignant phenotypes in hepatoblastoma patients
Cited by: 16
Author(s): Sida Liu, Fujing Xie, Xiaohong Xiang, Sinan Liu, Shunbin Dong, Kai Qu, Ting Lin
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2017.01371

Phenotypic and Comparative Transcriptome Analysis of Different Ploidy Plants in Dendrocalamus latiflorus Munro
Cited by: 11
Author(s): Guirong Qiao, Mingying Liu, Kunlin Song, Haiying Li, Haiming Yang, Yafang Yin, Renying Zhuo
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-54943-z

Water-soluble phosphorus contributes significantly to shaping the community structure of rhizospheric bacteria in rocky desertification areas
Cited by: 9
Author(s): Jinge Xie, Wei Xue, Cong Liu, Zongqiang Yan, Dong Li, Guoqiang Li, Xiwen Chen, Defu Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2019.00200

The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections
Cited by: 18
Author(s): Hugh D. Mitchell, Amie J. Eisfeld, Kelly G. Stratton, Natalie C. Heller, Lisa Bramer, Ji Wen, Jason McDermott, Lisa E. Gralinski, Amy C. Sims, Mai Quynh Le, Ralph S. Baric, Yoshihiro Kawaoka, Katrina M. Waters
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21175967

The Regulatory Network of CMPG1-V in Wheat–Blumeria graminis f. sp. tritici Interaction Revealed by Temporal Profiling Using RNA-Seq
Cited by: 5
Author(s): Jia Liu, Li Sun, Yiming Chen, Luyang Wei, Yongli Hao, Zhongyu Yu, Zongkuan Wang, Heng Zhang, Xu Zhang, Mengli Li, Haiyan Wang, Jin Xiao, Xiue Wang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpls.2021.668736

Comparison of Transcriptional Response of C3 and C4 Plants to Drought Stress Using Meta-Analysis and Systems Biology Approach
Cited by: 7
Author(s): Ahmad Tahmasebi, Ali Niazi‎
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2020.598660

Construction of a Five-Super-Enhancer-Associated-Genes Prognostic Model for Osteosarcoma Patients
Cited by: 11
Author(s): Zhanbo Ouyang, Guohua Li, Haihong Zhu, Jiaojiao Wang, Tingting Qi, Qiang Qu, Chao Tu, Jian Qu, Qiong Lu
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2018.01139

The Galling Truth: Limited Knowledge of Gall-Associated Volatiles in Multitrophic Interactions
Cited by: 13
Author(s): Renée M. Borges
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21176372

Decoding Susceptibility to Respiratory Viral Infections and Asthma Inception in Children
Cited by: 11
Author(s): James F. Read, Anthony Bosco
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcell.2021.656636

LncRNA Landscape of Coronary Atherosclerosis Reveals Differentially Expressed LncRNAs in Proliferation and Migration of Coronary Artery Smooth Muscle Cells
Cited by: 6
Author(s): Yaqing Zhou, Sheng Zhang, Wenfeng Ji, Xiongkang Gan, Hua Liu, Can Hou, Jiaxin Chen, Yanjun Wang, Shu He, Hongliang Zhou, En-Zhi Jia
Software Mentions: 1
Published: about 4 years ago

10.1186/s12885-021-08030-0

An energy metabolism-based eight-gene signature correlates with the clinical outcome of esophagus carcinoma
Cited by: 8
Author(s): Wei Zheng, Chaoying Chen, Jianghao Yu, Chengfeng Jin, Tie-Mei Han
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-54995-1

Morpho-physiological and proteomic responses to water stress in two contrasting tobacco varieties
Cited by: 17
Author(s): Zheng Chen, Jianing Xu, Fazhan Wang, Lin Wang, Zicheng Xu
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.630790

Identification of IL10RA by Weighted Correlation Network Analysis and in vitro Validation of Its Association With Prognosis of Metastatic Melanoma
Cited by: 7
Author(s): Siyuan Cheng, Zhe Li, Wenhao Zhang, Zhiqiang Sun, Zhipeng Fan, Judong Luo, Hui Liu
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2020.609832

Identification of LncRNAs Associated With FOLFOX Chemoresistance in mCRC and Construction of a Predictive Model
Cited by: 4
Author(s): Yiyi Zhang, Meifang Xu, Yanwu Sun, Ying Chen, Pan Chi, Zongbin Xu, Xingrong Lu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41388-021-01859-6

LncRNA MIR17HG promotes colorectal cancer liver metastasis by mediating a glycolysis-associated positive feedback circuit
Cited by: 39
Author(s): Senlin Zhao, Bingjie Guan, Yushuai Mi, Debing Shi, Ping Wei, Yanzi Gu, Sanjun Cai, Ye Xu, Xinxiang Li, Dongwang Yan, Mingzhu Huang, Dawei Li
Software Mentions: 1
Published: about 4 years ago

10.1155/2021/5533923

CD8+ T Lymphocyte Coexpression Genes Correlate with Immune Microenvironment and Overall Survival in Breast Cancer
Cited by: 0
Author(s): Jialing Jiang, Yi Zhao
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-018-4176-1

Integrated genomic analysis identifies clinically relevant subtypes of renal clear cell carcinoma
Cited by: 27
Author(s): Peng Wu, Jiali Liu, Shimei Pei, Changpeng Wu, Kai Yang, Shupeng Wang, Song Wu
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2020.00224

Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses
Cited by: 11
Author(s): Lauriane Hennet, Angélique Berger, Noemí Trabanco, Emeline Ricciuti, Jean François Dufayard, Stéphanie Bocs, Denis Bastianelli, Laurent Bonnal, Sandrine Roques, Laura Rossini, Delphine Luquet, Nancy Terrier, David Pot
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20010178

Polybenzyl Glutamate Biocompatible Scaffold Promotes the Efficiency of Retinal Differentiation toward Retinal Ganglion Cell Lineage from Human-Induced Pluripotent Stem Cells
Cited by: 19
Author(s): Ta-Ching Chen, Pin-Yi She, Dong Feng Chen, Rita Jui-Hsien Lu, Chang-Hao Yang, Ding-Siang Huang, Pao‐Yang Chen, Chenyu Lu, Kin‐Sang Cho, Shee–Uan Chen, Wei‐Fang Su
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2020.01256

Transcriptome and Flavonoids Metabolomic Analysis Identifies Regulatory Networks and Hub Genes in Black and White Fruits of Lycium ruthenicum Murray
Cited by: 16
Author(s): Tingting Li, Yunfang Fan, Huan Qin, Guoli Dai, Guo‐Xiu Li, Yanlong Li, Jingjin Wang, Yue Yin, Fang Chen, Xiaoya Qin, Yang Cao, Lin Tang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcell.2021.600344

Up-Regulation of SALL4 Is Associated With Survival and Progression via Putative WNT Pathway in Gastric Cancer
Cited by: 7
Author(s): Yang Yang, Xiaohong Wang, Yiqiang Liu, Hanjie Ying, Zhongwu Li, Ziyu Li, Zhaode Bu, Xiaojiang Wu, Lianhai Zhang, Jiafu Ji
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-015-1320-z

Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita
Cited by: 69
Author(s): Vera Brekhman, Assaf Malik, Brian J. Haas, Noa Sher, Tamar Lotan
Software Mentions: 1
Published: over 10 years ago

10.18632/aging.202713

LncRNA-mRNA co-expression analysis discovered the diagnostic and prognostic biomarkers and potential therapeutic agents for myocardial infarction
Cited by: 6
Author(s): Xiaocong Zhang, Ziqi Chen, Jiabin Zang, Chun Yao, Jian Shi, Ruqiong Nie, Guifu Wu
Software Mentions: 1
Published: over 4 years ago

10.1002/brb3.2309

Coexpression of the discoidin domain receptor 1 gene with oligodendrocyte‐related and schizophrenia risk genes in the developing and adult human brain
Cited by: 6
Author(s): Gerard Muntané, Marc Chillida, Selena Aranda, Arcadi Navarro, Elisabet Vilella
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12885-017-3413-3

Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration
Cited by: 24
Author(s): Princy Parsana, Sarah R. Amend, James R. Hernandez, Kenneth J. Pienta, Alexis Battle
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2016.00497

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System
Cited by: 67
Author(s): Collin M. Timm, Dale A. Pelletier, Sara Jawdy, Lee E. Gunter, Jeremiah A. Henning, Nancy L. Engle, Jayde A. Aufrecht, Emily Gee, Intawat Nookaew, Zamin K. Yang, Tse Yuan S Lu, Timothy J. Tschaplinski, Mitchel J. Doktycz, Gerald A. Tuskan, David J. Weston
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0193334

Chemokine expression in the early response to injury in human airway epithelial cells
Cited by: 7
Author(s): Bingqing Xie, Bharathi Laxman, Somaye Hashemifar, Randi Stern, T. Conrad Gilliam, Natalia Maltsev, Steven R. White
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.679629

Transcriptome Analysis of Resistance to Fusarium Wilt in Mung Bean (Vigna radiata L.)
Cited by: 6
Author(s): Yuan‐Jen Chang, Feifei Sun, Shufeng Sun, Lanfen Wang, Jing Wu, Zhendong Zhu
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2020.00252

Integrative Analysis for Elucidating Transcriptomics Landscapes of Glucocorticoid-Induced Osteoporosis
Cited by: 3
Author(s): Xiaoxia Ying, Xiyun Jin, Pingping Wang, Yingkun He, Haomiao Zhang, Xiang Ren, Songling Chai, Wang Fu, Pengcheng Zhao, Chen Chen, Guowu Ma, Huiying Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-021-01880-5

Silencing SHMT2 inhibits the progression of tongue squamous cell carcinoma through cell cycle regulation
Cited by: 12
Author(s): Yan Liao, Fang Wang, Yadong Zhang, Hao Cai, Song Fan, Jinsong Hou
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-019-5778-y

The adaptation strategies of Herpetospermum pedunculosum (Ser.) Baill at altitude gradient of the Tibetan plateau by physiological and metabolomic methods
Cited by: 21
Author(s): Yong Zhao, Frank F. Xu, Jia Liu, Fang Guan, Quan Hong, Fanjuan Meng
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-58179-0

Depicting the genetic architecture of pediatric cancers through an integrative gene network approach
Cited by: 15
Author(s): Clara Savary, Artem Kim, Alexandra Lespagnol, Virginie Gandemer, Isabelle Pellier, Catherine Andrieu, Gilles Pagès, Marie‐Dominique Galibert, Yuna Blum, Marie de Tayrac
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-07817-5

Comprehensive analysis of ceRNA network related to lincRNA in glioblastoma and prediction of clinical prognosis
Cited by: 3
Author(s): Guangdong Liu, Danian Liu, Jingjing Huang, Jianxin Li, Chuang Wang, Shiqiang Ge, Haidong Gong
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0073413

A Network-Based Method to Assess the Statistical Significance of Mild Co-Regulation Effects
Cited by: 18
Author(s): Emőke-Ágnes Horvát, Jitaovid Da Zhang, Stefan Uhlmann, Özgür Şahin, Katharina Anna Zweig
Software Mentions: 1
Published: almost 12 years ago

10.3389/fcell.2021.734897

Potential Role of S-Palmitoylation in Cancer Stem Cells of Lung Adenocarcinoma
Cited by: 7
Author(s): Yitong Zhang, Fenglan Li, Kexin Fu, Xiqing Liu, I-Chia Lien, Hui Li
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2018.01155

Shedding Light on Chemically Mediated Tri-Trophic Interactions: A 1H-NMR Network Approach to Identify Compound Structural Features and Associated Biological Activity
Cited by: 10
Author(s): Lora A. Richards, Celso José Bruno de Oliveira, Lee A. Dyer, Arran Rumbaugh, Federico Urbano-Muñoz, Ian S. Wallace, Craig D. Dodson, Christopher S. Jeffrey
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcvm.2014.00011

Dual Linkage of a Locus to Left Ventricular Mass and a Cardiac Gene Co-Expression Network Driven by a Chromosome Domain
Cited by: 2
Author(s): Marie Pier Scott-Boyer, Samantha D. Praktiknjo, Bastien Llamas, Sylvie Picard, Christian F. Deschepper
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2017.00398

Spatiotemporal Transcriptome Analysis Provides Insights into Bicolor Tepal Development in Lilium “Tiny Padhye”
Cited by: 39
Author(s): Liang Xu, Panpan Yang, Yue Feng, Hua Xu, Yuwei Cao, Yuchao Tang, Suxia Yuan, Xinyan Li, Jun Ming
Software Mentions: 1
Published: over 8 years ago

10.3389/fcvm.2019.00100

Isoproterenol-Induced Cardiac Diastolic Dysfunction in Mice: A Systems Genetics Analysis
Cited by: 14
Author(s): Jessica Wang, Adriana Huertas-Vázquez, Yibin Wang, Aldons J. Lusis
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo9080157

Bronchoalveolar Lavage Fluid from COPD Patients Reveals More Compounds Associated with Disease than Matched Plasma
Cited by: 27
Author(s): Eitan Halper-Stromberg, Lucas A. Gillenwater, Charmion Cruickshank‐Quinn, Wanda K. O’Neal, Nichole Reisdorph, Irina Petrache, Yonghua Zhuang, Wassim W. Labaki, Jeffrey L. Curtis, James M. Wells, Stephen I. Rennard, Katherine Pratte, Prescott G. Woodruff, Kathleen A. Stringer, Katerina Kechris, Russell P. Bowler
Software Mentions: 1
Published: about 6 years ago

10.3389/fpsyt.2019.00706

Integrated Analysis of Brain Transcriptome Reveals Convergent Molecular Pathways in Autism Spectrum Disorder
Cited by: 12
Author(s): Xiaodan Li, Yuncong Zhang, Luxi Wang, Yunqing Lin, Zhaomin Gao, Xiaolei Zhan, Yan Huang, Chongde Sun, Dong Wang, Shuang Liang, Lijie Wu
Software Mentions: 1
Published: almost 6 years ago

10.18632/aging.104083

Identification of novel prognosis-related genes in the endometrial cancer immune microenvironment
Cited by: 14
Author(s): Jian Ma, Jingkai Zhang, Di Yang, Xiaoxin Ma
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-020-02785-7

Transcriptome profiling reveals the effects of drought tolerance in Giant Juncao
Cited by: 15
Author(s): Jiawei Zhou, Siqi Chen, Wen-jiao Shi, Rakefet David‐Schwartz, Sutao Li, Fulin Yang, Zhan-xi Lin
Software Mentions: 1
Published: over 4 years ago

10.3389/fpsyt.2020.543893

Non-Coding RNAs in Psychiatric Disorders and Suicidal Behavior
Cited by: 38
Author(s): Yuta Yoshino, Yogesh K. Dwivedi
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpsyt.2020.580307

A Weighted Gene Co-expression Network Analysis Reveals lncRNA Abnormalities in the Peripheral Blood Associated With Ultra-High-Risk for Psychosis
Cited by: 2
Author(s): Yan Ren, Wei Li, Sha Li, Zhi Li, Jiaying Wang, Hong Yang, Yong Xu
Software Mentions: 1
Published: over 4 years ago

10.3389/fpsyt.2021.581093

Gene Expression Differences Between Young Adults Based on Trauma History and Post-traumatic Stress Disorder
Cited by: 0
Author(s): Kaitlin Bountress, Vladimir I. Vladimirov, Gowon O. McMichael, Zachary N. Taylor, Gary Hardiman, Dongjun Chung, Zachary W. Adams, Carla Kmett Danielson, Ananda B. Amstadter
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-60456-x

Functionally Enigmatic Genes in Cancer: Using TCGA Data to Map the Limitations of Annotations
Cited by: 14
Author(s): Alexandra Maertens, Vy Tran, Mikhail Maertens, André Kleensang, Thomas Luechtefeld, Thomas Hartung, Channing J. Paller
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.9773

Significance of hub genes and immune cell infiltration identified by bioinformatics analysis in pelvic organ prolapse
Cited by: 8
Author(s): Ying Zhao, Zhijun Xia, Te Yu Lin, Yitong Yin
Software Mentions: 1
Published: almost 5 years ago

10.3389/fbioe.2020.00177

Investigation of miRNA and mRNA Co-expression Network in Ependymoma
Cited by: 12
Author(s): Feili Liu, Hang Dong, Zi Mei, Tao Huang
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2021.651895

Functional Diversity Facilitates Stability Under Environmental Changes in an Outdoor Microalgal Cultivation System
Cited by: 8
Author(s): Lina Mattsson, Eva Sörenson, Eric Capo, Hanna Farnelid, Maurice Hirwa, Martin Olofsson, Fredrik Svensson, Elin Lindehoff, Catherine Legrand
Software Mentions: 1
Published: over 4 years ago

10.1155/2018/8726456

“Omics” Signatures in Peripheral Monocytes from Women with Low BMD Condition
Cited by: 2
Author(s): Bhavna Daswani, M. Ikram Khatkhatay
Software Mentions: 1
Published: over 7 years ago

10.1186/s12983-019-0336-7

Gene expression vs. sequence divergence: comparative transcriptome sequencing among natural Rhinolophus ferrumequinum populations with different acoustic phenotypes
Cited by: 12
Author(s): Hanbo Zhao, Hui Wang, Tong Liu, Sen Liu, Longru Jin, Xiaobin Huang, Wentao Dai, Keping Sun, Jiang Feng
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12920-021-01012-y

Multivariate transcriptome analysis identifies networks and key drivers of chronic lymphocytic leukemia relapse risk and patient survival
Cited by: 2
Author(s): Tiara Griffen, Eric B. Dammer, Courtney D. Dill, Kaylin Carey, Corey Young, Sha’Kayla Nunez, Adaugo Q. Ohandjo, Steven M. Kornblau, James W. Lillard
Software Mentions: 1
Published: about 4 years ago

10.1007/s10142-018-0607-y

Comparison of gene co-networks reveals the molecular mechanisms of the rice (Oryza sativa L.) response to Rhizoctonia solani AG1 IA infection
Cited by: 15
Author(s): Jinfeng Zhang, Wenjuan Zhao, Rong Fu, Chunyan Fu, Lingxia Wang, Huainian Liu, Shuangcheng Li, Qi Deng, Shiquan Wang, Jun Zhu, Yueyang Liang, Ping Li, Aiping Zheng
Software Mentions: 1
Published: about 7 years ago

10.1007/s10142-019-00678-z

Global transcriptome analysis uncovers the gene co-expression regulation network and key genes involved in grain development of wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Qing Chi, Lijian Guo, Meng Ma, Lijian Zhang, Hude Mao, Baowei Wu, Xiangli Liu, Ricardo H. Ramírez-González, Cristóbal Uauy, R. Appels, Huixian Zhao
Software Mentions: 1
Published: about 6 years ago

10.1534/g3.112.004788

Systems-Level Analysis of Genome-Wide Association Data
Cited by: 43
Author(s): Charles R. Farber
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-020-59953-w

Comprehensive analyses of the annexin (ANN) gene family in Brassica rapa, Brassica oleracea and Brassica napus reveals their roles in stress response
Cited by: 25
Author(s): Xin He, Li Liao, Sai Xie, Yang Gi Min, Ping Xie, Wei Liu, Yu Kang, Luyao Huang, Mei Wang, Lunwen Qian, Zhongsong Liu, Chunyun Guan, Mei Guan, Wei Hua
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.116.033894

Preservation Analysis of Macrophage Gene Coexpression Between Human and Mouse Identifies PARK2 as a Genetically Controlled Master Regulator of Oxidative Phosphorylation in Humans
Cited by: 12
Author(s): Veronica Codoni, Yuna Blum, Mete Civelek, Carole Proust, Oscar Franzén, Johan Björkegren, Wilfried Le Goff, François Cambien, Aldons J. Lusis, David‐Alexandre Trégouët
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12864-019-6025-2

Transcriptome-wide association study and eQTL analysis to assess the genetic basis of bulb-yield traits in garlic (Allium sativum)
Cited by: 7
Author(s): Siyuan Zhu, Xiaojun Chen, Xia Liu, Jian Zhao, Touming Liu
Software Mentions: 1
Published: almost 6 years ago

10.1155/2015/316735

Gene Coexpression and Evolutionary Conservation Analysis of the Human Preimplantation Embryos
Cited by: 3
Author(s): Tiancheng Liu, Yuling Lin, Guohui Ding, Zhen Wang, Lei Liu, Hong Li, Yixue Li
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.117.042408

A Systemic Analysis of Transcriptomic and Epigenomic Data To Reveal Regulation Patterns for Complex Disease
Cited by: 6
Author(s): Chao Xu, Jigang Zhang, Dongdong Lin, Lan Zhang, Hui Shen, Hong‐Wen Deng
Software Mentions: 1
Published: about 8 years ago

10.1534/g3.117.043679

Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat
Cited by: 52
Author(s): Philippa Borrill, Sophie A Harrington, Cristóbal Uauy
Software Mentions: 1
Published: almost 8 years ago

10.1155/2021/9957569

Application of Weighted Gene Coexpression Network Analysis to Identify Key Modules and Hub Genes in Systemic Juvenile Idiopathic Arthritis
Cited by: 5
Author(s): Mi Zhou, Ruru Guo, Yong Fei Wang, Wanling Yang, Rongxiu Li, Liangjing Lu
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-59605-z

Identification of Key Components in Colon Adenocarcinoma Using Transcriptome to Interactome Multilayer Framework
Cited by: 8
Author(s): Ehsan Pournoor, Zaynab Mousavian, Abbas Nowzari Dalini, Ali Masoudi‐Nejad
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.202761

A five-m6A regulatory gene signature is a prognostic biomarker in lung adenocarcinoma patients
Cited by: 12
Author(s): Ximei Wu, Hongxu Sheng, Luming Wang, Pinghui Xia, Yiqing Wang, Li Yu, Wang Lv, Jian Hu
Software Mentions: 1
Published: over 4 years ago

10.3389/fnagi.2018.00259

Gene Expression Analysis Reveals Novel Gene Signatures Between Young and Old Adults in Human Prefrontal Cortex
Cited by: 25
Author(s): Huanming Yang, Pan Jiang, Ying Xin, Xiang-Nan Mi, Jiahui Wang, Qin Gao, Hongyu Luo
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnagi.2017.00166

Dissecting the Molecular Mechanisms of Neurodegenerative Diseases through Network Biology
Cited by: 54
Author(s): José A. Santiago, Virginie Bottero, Judith A. Potashkin
Software Mentions: 1
Published: about 8 years ago

10.1534/g3.120.401275

Dissecting the Genetic Architecture of Cystatin C in Diversity Outbred Mice
Cited by: 9
Author(s): Md. Nazmul Huda, Melissa VerHague, Jody Albright, Tangi Smallwood, Timothy A. Bell, Excel Que, Darla R. Miller, Baback Roshanravan, Hooman Allayee, Fernando P Pardo Manuel De Villena, Brian J. Bennett
Software Mentions: 1
Published: about 5 years ago

10.3389/fnagi.2016.00171

A Systems View of the Differences between APOE ε4 Carriers and Non-carriers in Alzheimer’s Disease
Cited by: 12
Author(s): Shan Jiang, Ling Tang, Na Zhao, Wanling Yang, Yu Qiu, Hongzhuan Chen
Software Mentions: 1
Published: about 9 years ago

10.1534/g3.120.401067

NetExtractor: Extracting a Cerebellar Tissue Gene Regulatory Network Using Differentially Expressed High Mutual Information Binary RNA Profiles
Cited by: 2
Author(s): Benafsh Husain, Allison R Hickman, Yuqing Hang, Benjamin T. Shealy, Karan Sapra, Frank Alexander Feltus
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-015-1398-3

Hsf and Hsp gene families in Populus: genome-wide identification, organization and correlated expression during development and in stress responses
Cited by: 79
Author(s): Zening Jin, Bobin Liu, Jianbo Li, Li Zhang, Yan Wang, Huanquan Zheng, Mengzhu Lu, Jun Chen
Software Mentions: 1
Published: over 10 years ago

10.1007/s10120-018-00911-x

Prognostic and clinicopathological significance of long noncoding RNA CTD-2510F5.4 in gastric cancer
Cited by: 30
Author(s): Zhe Wang, Baoli Qin
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/4921387

Investigation of Potential Genetic Biomarkers and Molecular Mechanism of Ulcerative Colitis Utilizing Bioinformatics Analysis
Cited by: 19
Author(s): Jiaqi Zhang, Xue Wang, Lin Xu, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 5 years ago

10.1053/j.gastro.2021.01.221

Mucosal Genomics Implicate Lymphocyte Activation and Lipid Metabolism in Refractory Environmental Enteric Dysfunction
Cited by: 34
Author(s): Yael Haberman, Najeeha Talat Iqbal, Sudhir Ghandikota, Indika Mallawaarachchi, Tzipi Braun, Phillip Dexheimer, Najeeb Rahman, Rotem Hadar, Kamran Sadiq, Zubair Ahmad, Romana Idress, Junaid Iqbal, Sheraz Ahmed, Aneeta Hotwani, Fayyaz Umrani, Lubaina Ehsan, Greg Medlock, Sana Syed, Chris Moskaluk, Z. Jennie, Anil G. Jegga, Sean R. Moore, Syed Asad Ali, Lee A. Denson
Software Mentions: 1
Published: about 4 years ago

10.1186/s12870-020-02578-y

Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine
Cited by: 15
Author(s): Antoine Gautier, Noé Cochetel, Isabelle Merlin, Cyril Hévin, Virginie Lauvergeat, Philippe Vivin, Alain Mollier, Nathalie Ollat, Sarah Jane Cookson
Software Mentions: 1
Published: almost 5 years ago

10.3390/foods10020391

Transcriptome and Metabolome Dynamics Explain Aroma Differences between Green and Red Prickly Ash Fruit
Cited by: 24
Author(s): Xitong Fei, Yichen Qi, Yu Li, Shujie Wang, Hu Hong, Anzhi Wei
Software Mentions: 1
Published: over 4 years ago

10.1155/2020/4169691

Identifying Tumorigenesis and Prognosis-Related Genes of Lung Adenocarcinoma: Based on Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Ming Yi, Tianye Li, Shuang Qin, Shengnan Yu, Qian Chu, An‐Ping Li, Kongming Wu
Software Mentions: 1
Published: over 5 years ago

10.1002/2211-5463.12872

SPC25 may promote proliferation and metastasis of hepatocellular carcinoma via p53
Cited by: 12
Author(s): Fengjuan Chen, Ka Zhang, Yilin Huang, Fang Luo, Kunpeng Hu, Qing-Qing Cai
Software Mentions: 1
Published: about 5 years ago

10.1093/molbev/msab004

Functional Diversification, Redundancy, and Epistasis among Paralogs of the <i>Drosophila melanogaster Obp50a–d</i> Gene Cluster
Cited by: 10
Author(s): Joel A. Johnstun, Vijay Shankar, Sneha S Mokashi, Lakshmi T. Sunkara, Ugonna E Ihearahu, Roberta Lyman, Trudy F. C. Mackay, Robert R. H. Anholt
Software Mentions: 1
Published: over 4 years ago

10.3390/genes9070325

Weighted Gene Co-Expression Network Analysis Reveals Dysregulation of Mitochondrial Oxidative Phosphorylation in Eating Disorders
Cited by: 4
Author(s): Liulin Yang, Yun Li, Turki Turki, Huizi Tan, Zhi Wei, Xiao Chang
Software Mentions: 1
Published: about 7 years ago

10.3390/genes9070336

Transcriptome Analysis of Adipose Tissue Indicates That the cAMP Signaling Pathway Affects the Feed Efficiency of Pigs
Cited by: 23
Author(s): Yongming Xu, Xiaolong Qi, Mingyang Hu, Ruiyi Lin, Ye Hou, Zhangxu Wang, Huanhuan Zhou, Yi‐Fang Zhao, Yu Luan, Shuhong Zhao, Xinyun Li
Software Mentions: 1
Published: about 7 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479