cran: WGCNA | Projects | Ecosyste.ms: Papers

10.1186/s12864-018-5358-6

Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii
Cited by: 20
Author(s): Fei Tian, Sijia Liu, Jianquan Shi, Hongfang Qi, Kai Zhao, Bin Xie
Software Mentions: 1
Published: almost 8 years ago

10.3389/fonc.2020.01787

Transcriptome-Based Network Analysis Unveils Eight Immune-Related Genes as Molecular Signatures in the Immunomodulatory Subtype of Triple-Negative Breast Cancer
Cited by: 24
Author(s): Jinguo Zhang, Li Wang, Xiaolin Xu, Xin Li, Wencai Guan, Ting Meng, Guoxiong Xu
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-14-825

Genome-wide transcriptional analysis of T cell activation reveals differential gene expression associated with psoriasis
Cited by: 24
Author(s): Núria Palau, Antonio Julià, Carlos Ferrándiz, Lluís Puig, Eduardo Fonseca, Enrique Vega Fernández, María López-Lasanta, Raül Tortosa, Sara Marsal
Software Mentions: 1
Published: almost 13 years ago

10.3389/fonc.2020.598801

Identification of Metabolism-Associated Prostate Cancer Subtypes and Construction of a Prognostic Risk Model
Cited by: 14
Author(s): Yanlong Zhang, Ruiqiao Zhang, Fangzhi Liang, Liyun Zhang, Xingwei Liang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnins.2021.647974

ABCA7 Regulates Brain Fatty Acid Metabolism During LPS-Induced Acute Inflammation
Cited by: 11
Author(s): Tomonori Aikawa, Yingxue Ren, Magnus Holm, Yan W. Asmann, Amer Alam, Michael L. Fitzgerald, Guojun Bu, Takahisa Kanekiyo
Software Mentions: 1
Published: over 5 years ago

10.3389/fnins.2019.00926

Pilot Study of Metabolomic Clusters as State Markers of Major Depression and Outcomes to CBT Treatment
Cited by: 13
Author(s): Sudeepa Bhattacharyya, Boadie W. Dunlop, Siamak MahmoudianDehkordi, Ahmed T. Ahmed, Gregory Louie, Mark A. Frye, Richard M. Weinshilboum, Ranga Krishnan, A. John Rush, Helen S. Mayberg, W. Edward Craighead, Rima Kaddurah‐Daouk
Software Mentions: 1
Published: about 7 years ago

10.3389/fnins.2020.00571

Gene Deregulation and Underlying Mechanisms in Spinocerebellar Ataxias With Polyglutamine Expansion
Cited by: 15
Author(s): Anna Niewiadomska-Cimicka, Antoine Hache, Yvon Trottier
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2020.00228

Erosion of Gene Co-expression Networks Reveal Deregulation of Immune System Processes in Late-Onset Alzheimer’s Disease
Cited by: 5
Author(s): John Malamon, Andres Kriete
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2021.629156

Characterizing the Expression Patterns of Parkinson’s Disease Associated Genes
Cited by: 5
Author(s): Bin Li, Guizhe Zhao, Kuokuo Li, Zheng Wang, Zhenghuan Fang, Xiaomeng Wang, Tengfei Luo, Yi Zhang, Yijing Wang, Qian Chen, Yuanfeng Huang, Lijie Dong, Jifeng Guo, Beisha Tang, Jinchen Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fnins.2014.00331

Neuroinformatic analyses of common and distinct genetic components associated with major neuropsychiatric disorders
Cited by: 70
Author(s): Amit Lotan, Michaela Fencková, Janita Bralten, Aet Alttoa, Luanna Dixson, Robert W. Williams, Monique van der Voet
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnins.2015.00176

Epigenetic modulation of brain gene networks for cocaine and alcohol abuse
Cited by: 47
Author(s): Sean P. Farris, R. Adron Harris, Igor Ponomarev
Software Mentions: 1
Published: over 11 years ago

10.3389/fneur.2020.00233

The Predicted Key Molecules, Functions, and Pathways That Bridge Mild Cognitive Impairment (MCI) and Alzheimer's Disease (AD)
Cited by: 42
Author(s): Tao Ye, Yoo Min Han, Lujiao Yu, Qi Wang, Sean X. Leng, Haiyan Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-020-6654-5

Transcriptomic profiling of Solanum peruvianum LA3858 revealed a Mi-3-mediated hypersensitive response to Meloidogyne incognita
Cited by: 11
Author(s): Chong Du, Jingbin Jiang, He Zhang, Tingting Zhao, Huanhuan Yang, Dongye Zhang, Zhentong Zhao, Xiangyang Xu, Jin-Fu Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fneur.2020.578972

Phenotypic Subtyping and Re-analyses of Existing Transcriptomic Data from Autistic Probands in Simplex Families Reveal Differentially Expressed and ASD Trait-Associated Genes
Cited by: 4
Author(s): Valerie W. Hu, Chongfeng Bi
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnmol.2019.00197

Cross-Species Co-analysis of Prefrontal Cortex Chronic Ethanol Transcriptome Responses in Mice and Monkeys
Cited by: 21
Author(s): James W. Bogenpohl, Maren L. Smith, Sean P. Farris, Catherine I. Dumur, Marcelo F. López, Howard C. Becker, Kathleen A. Grant, Michael F. Miles
Software Mentions: 1
Published: about 7 years ago

10.3389/fonc.2020.01201

Editorial: Using Cancer ‘Omics’ to Understand Cancer
Cited by: 4
Author(s): Barbara K. Dunn, Daoud Meerzaman
Software Mentions: 1
Published: over 6 years ago

10.3389/fnmol.2015.00042

Dynamical properties of gene regulatory networks involved in long-term potentiation
Cited by: 4
Author(s): Gonzalo S. Nido, Margaret M. Ryan, Ľubica Beňušková, Joanna M. Williams
Software Mentions: 1
Published: about 11 years ago

10.3389/fnmol.2017.00399

Co-expression Patterns between ATN1 and ATXN2 Coincide with Brain Regions Affected in Huntington’s Disease
Cited by: 10
Author(s): Arlin Keo, N. Ahmad Aziz, Oleh Dzyubachyk, Jeroen van der Grond, Willeke M. C. van Roon‐Mom, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Mahfouz
Software Mentions: 1
Published: almost 9 years ago

10.3389/fnmol.2018.00102

Integrating Genetic and Gene Co-expression Analysis Identifies Gene Networks Involved in Alcohol and Stress Responses
Cited by: 10
Author(s): Jianxun Luo, Pei Xu, Peijian Cao, Hongjian Wan, Xiaonan Lv, Shengchun Xu, Gangjun Wang, Melloni N. Cook, Byron C. Jones, Lu Lu, Xusheng Wang
Software Mentions: 1
Published: over 8 years ago

10.3389/fnmol.2016.00139

mRNA Transcriptomics of Galectins Unveils Heterogeneous Organization in Mouse and Human Brain
Cited by: 9
Author(s): Sebastian John, Rashmi Mishra
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmolb.2021.602227

Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8+ T Cell Infiltration
Cited by: 3
Author(s): Yiping Zou, Zhihong Chen, Hongwei Han, Su Ruan, Lina Jin, Yuanpeng Zhang, Zhengrong Chen, Zuyi Ma, Qi Lou, Ning Shi, Haosheng Jin
Software Mentions: 1
Published: over 5 years ago

10.3389/fmolb.2019.00139

Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data
Cited by: 14
Author(s): Edgardo Galán-Vásquez, Ernesto Pérez‐Rueda
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-11-161

Functional annotation of novel lineage-specific genes using co-expression and promoter analysis
Cited by: 8
Author(s): Charu G. Kumar, Robin E. Everts, Juan J. Loor, Harris A. Lewin
Software Mentions: 1
Published: over 16 years ago

10.3389/fmolb.2021.625470

Exploration of a Robust and Prognostic Immune Related Gene Signature for Cervical Squamous Cell Carcinoma
Cited by: 7
Author(s): Zhihua Zuo, Junjun Xiong, Chuyi Zeng, Yao Jiang, Kang Xiong, Hualin Tao, Yongcan Guo
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2018.01841

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis
Cited by: 7
Author(s): Amnah Siddiqa, Elisa Cirillo, Samar Tareen, Amjad Ali, Martina Kutmon, Lars Eijssen, Jamil Ahmad, Chris T. Evelo, Susan L. Coort
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmolb.2020.598599

Identification and Immunocorrelation of Prognosis-Related Genes Associated With Development of Muscle-Invasive Bladder Cancer
Cited by: 4
Author(s): Jingxian Li, Yantao Lou, Shuai Li, Fei Sheng, Shuaibing Liu, Eugenie Du, Zhihong Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmolb.2021.655361

Network-Based Expression Analyses and Experimental Verifications Reveal the Involvement of STUB1 in Acute Kidney Injury
Cited by: 7
Author(s): Yanting Shi, Genwen Chen, Jie Teng
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2019.00275

Identification of the Biomarkers and Pathological Process of Osteoarthritis: Weighted Gene Co-expression Network Analysis
Cited by: 36
Author(s): Hao Gu, Min Yang, Jia Guo, Zhang Chao, Lu-Lu Lin, Yang Liu, Renxiong Wei
Software Mentions: 1
Published: over 7 years ago

10.3389/fmolb.2021.682471

Hub Long Noncoding RNAs with m6A Modification for Signatures and Prognostic Values in Kidney Renal Clear Cell Carcinoma
Cited by: 10
Author(s): Gaoteng Lin, Huadong Wang, Yuqi Wu, Keruo Wang, Gang Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.01155

Changes in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive Compounds
Cited by: 33
Author(s): Haifeng Geng, Mary Bao Tran-Gyamfi, Todd W. Lane, Kenneth L. Sale, Eizadora T. Yu
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2019.00352

Alterations of the Mice Gut Microbiome via Schistosoma japonicum Ova-Induced Granuloma
Cited by: 29
Author(s): Yanqing Zhao, Shuxu Yang, Bei Li, Wei Li, Jue Wang, Zongyun Chen, Jing Yang, Huabing Tan, Jian Li
Software Mentions: 1
Published: over 7 years ago

10.1038/s41398-021-01536-y

Genome-wide DNA methylation and gene expression analyses in monozygotic twins identify potential biomarkers of depression
Cited by: 28
Author(s): Weijing Wang, Weilong Li, Yili Wu, Xiaocao Tian, Haiping Duan, Shuxia Li, Qihua Tan, Dongfeng Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2015.00487

Identification of a transporter Slr0982 involved in ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803
Cited by: 25
Author(s): Yanan Zhang, Xiangfeng Niu, Mengliang Shi, Guangsheng Pei, Xiaoqing Zhang, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-019-5777-z

Differential expression of innate and adaptive immune genes in the survivors of three gibel carp gynogenetic clones after herpesvirus challenge
Cited by: 17
Author(s): Wei-Jia Lu, Fan-Xiang Gao, Yan Wang, Qi-Ya Zhang, Zhi Li, Xiaojuan Zhang, Li Zhou, Jian‐Fang Gui
Software Mentions: 1
Published: over 7 years ago

10.1007/s12975-020-00869-y

Molecular Correlates of Hemorrhage and Edema Volumes Following Human Intracerebral Hemorrhage Implicate Inflammation, Autophagy, mRNA Splicing, and T Cell Receptor Signaling
Cited by: 21
Author(s): Marc Durocher, Bodie Knepp, Alan Yee, Glen C. Jickling, Fernando Rodríguez Rodríguez, Kwan Ng, Xinhua Zhan, Farah Hamade, Eva Ferino, Hajar Amini, Paulina Carmona-Mora, Heather Hull, Bradley P. Ander, Frank R. Sharp, Boryana Stamova
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmed.2020.584747

Integrating Tumor Stroma Biomarkers With Clinical Indicators for Colon Cancer Survival Stratification
Cited by: 4
Author(s): Yong Chen, Wenlong Wang, Bo Jiang, Lei Yao, Fada Xia, Xinying Li
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2020.592084

Therapeutic Potential of Triptolide as an Anti-Inflammatory Agent in Dextran Sulfate Sodium-Induced Murine Experimental Colitis
Cited by: 31
Author(s): Bufu Tang, Jinyu Zhu, Baohui Zhang, Fazong Wu, Yajie Wang, Qiaoyou Weng, Shiji Fang, Zheng Lu, Yang Yang, Rongfang Qiu, Minjiang Chen, Min Xu, Zhongwei Zhao, Jiansong Ji
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-14-112

Cross-species transcriptional network analysis reveals conservation and variation in response to metal stress in cyanobacteria
Cited by: 31
Author(s): Jiangxin Wang, Gang Wu, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 13 years ago

10.1186/s40478-020-01109-y

Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain
Cited by: 16
Author(s): Joanna J. Bury, Annabelle Chambers, Paul R. Heath, Paul G. Ince, Pamela J. Shaw, Fiona E. Matthews, Carol Brayne, Julie E. Simpson, Stephen B. Wharton
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-15-1015

Key regulators in prostate cancer identified by co-expression module analysis
Cited by: 23
Author(s): Junfeng Jiang, Peilin Jia, Zhongming Zhao, Bairong Shen
Software Mentions: 1
Published: almost 12 years ago

10.3389/fimmu.2020.01070

Human Monocyte Subset Distinctions and Function: Insights From Gene Expression Analysis
Cited by: 48
Author(s): Sarah Cormican, Matthew D. Griffin
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.603337

Identifying Potential Candidate Hub Genes and Functionally Enriched Pathways in the Immune Responses to Quadrivalent Inactivated Influenza Vaccines in the Elderly Through Co-Expression Network Analysis
Cited by: 1
Author(s): Jing Yang, Jiayou Zhang, Renfeng Fan, Wei Zhao, Han Tian, Kai Duan, Xinguo Li, Peiyu Zeng, Jinglong Deng, Jikai Zhang, Xiaoming Yang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2020.01281

Identification of Immune-Related Genes Contributing to the Development of Glioblastoma Using Weighted Gene Co-expression Network Analysis
Cited by: 30
Author(s): Yahui Kong, Zichao Feng, Yulin Zhang, Xiaofei Liu, Yuan Ma, Zhimin Zhao, Bin Huang, An-Jing Chen, Di Zhang, Frits Thorsen, Jian Wang, Ning Yang, Xingang Li
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-14-13

Genetic architecture of gene expression in the chicken
Cited by: 11
Author(s): Dragana Stanley, Nathan S. Watson-Haigh, Christopher Cowled, Robert J. Moore
Software Mentions: 1
Published: almost 14 years ago

10.3389/fphys.2019.00662

Analysis of Genes Involved in Ulcerative Colitis Activity and Tumorigenesis Through Systematic Mining of Gene Co-expression Networks
Cited by: 28
Author(s): Wu Shi, Rongjun Zou, Minglei Yang, Lei Mai, Jiangnan Ren, Ji Wen, Zhaoshi Liu, Renxu Lai
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-015-1398-3

Hsf and Hsp gene families in Populus: genome-wide identification, organization and correlated expression during development and in stress responses
Cited by: 79
Author(s): Zening Jin, Bobin Liu, Jianbo Li, Li Zhang, Yan Wang, Huanquan Zheng, Mengzhu Lu, Jun Chen
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-019-6025-2

Transcriptome-wide association study and eQTL analysis to assess the genetic basis of bulb-yield traits in garlic (Allium sativum)
Cited by: 7
Author(s): Siyuan Zhu, Xiaojun Chen, Xia Liu, Jian Zhao, Touming Liu
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2018.00137

A Systems Biology Study in Tomato Fruit Reveals Correlations between the Ascorbate Pool and Genes Involved in Ribosome Biogenesis, Translation, and the Heat-Shock Response
Cited by: 9
Author(s): Rebecca Stevens, Piérre Baldet, Jean‐Paul Bouchet, Mathilde Causse, Catherine Deborde, Claire Deschodt, Mireille Faurobert, Cécile Garchery, Virginie Garcia, Hélène Gautier, Barbara Gouble, Mickaël Maucourt, Annick Moing, David L. Page, J. Petit, Jean‐Luc Poëssel, Vincent Truffault, Christophe Rothan
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2021.730300

Integration of Molecular Inflammatory Interactome Analyses Reveals Dynamics of Circulating Cytokines and Extracellular Vesicle Long Non-Coding RNAs and mRNAs in Heroin Addicts During Acute and Protracted Withdrawal
Cited by: 7
Author(s): Zunyue Zhang, Hongjin Wu, Qingyan Peng, Zhenrong Xie, Fengrong Chen, Yuru Ma, Yizhi Zhang, Yong Zhou, Jun Yang, Cheng Chen, Shaoyou Li, Yongjin Zhang, Wen Tian, Yuan Wang, Yu Xu, Huayou Luo, Mei Zhu, Yi‐Qun Kuang, Juehua Yu, Kunhua Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.00616

A Signaling Pathway to Mediate the Combined Immunomodulation of Acetylcholine and Enkephalin in Oyster Crassostrea gigas
Cited by: 3
Author(s): Zhaoqun Liu, Zhi Zhou, Lingling Wang, Yukun Zhang, Yanan Zong, Yan Zheng, Meijia Li, Weilin Wang, Linsheng Song
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.01194

Expression of S100A Alarmins in Cord Blood Monocytes Is Highly Associated With Chorioamnionitis and Fetal Inflammation in Preterm Infants
Cited by: 12
Author(s): Veronika Golubinskaya, Henri Puttonen, Ing‐Marie Fyhr, Halfdan Rydbeck, Ann Hellström, Bo Jacobsson, Holger Nilsson, Carina Mallard, Karin Sävman
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-019-5778-y

The adaptation strategies of Herpetospermum pedunculosum (Ser.) Baill at altitude gradient of the Tibetan plateau by physiological and metabolomic methods
Cited by: 21
Author(s): Yong Zhao, Frank F. Xu, Jia Liu, Fang Guan, Quan Hong, Fanjuan Meng
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.739514

Circulating Metabolomic Signature in Generalized Pustular Psoriasis Blunts Monocyte Hyperinflammation by Triggering Amino Acid Response
Cited by: 7
Author(s): Na Yu, Peng Chen, Wenjuan Chen, Zengqi Sun, Jianfeng Zheng, Shujie Zhang, Yangfeng Ding, Yujun Shi
Software Mentions: 1
Published: about 5 years ago

10.1128/mSystems.00036-16

RNA Sequencing-Based Genome Reannotation of the Dermatophyte <i>Arthroderma benhamiae</i> and Characterization of Its Secretome and Whole Gene Expression Profile during Infection
Cited by: 30
Author(s): Van Du T. Tran, Niccolò De Coi, Marc Feuermann, Emanuel Schmid‐Siegert, Elena-Tatiana Băguţ, Bernard Mignon, Patrice Waridel, Corinne Peter, Sylvain Pradervand, Marco Pagni, Michel Monod
Software Mentions: 1
Published: about 10 years ago

10.18632/aging.202432

Identification of hub genes and key pathways in the emphysema phenotype of COPD
Cited by: 6
Author(s): Qiunan Zuo, Youyu Wang, Deqing Yang, Shujin Guo, Xiaohui Li, Jiajia Dong, Chun Wan, Yongchun Shen, Fuqiang Wen
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2014.00565

Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores
Cited by: 38
Author(s): Heidi M. Appel, Howard W. Fescemyer, Jürgen Ehlting, David J. Weston, Erin MacNeal Rehrig, Trupti Joshi, Dong Xu, Jöerg Bohlmann, Jack C. Schultz
Software Mentions: 1
Published: almost 12 years ago

10.3389/fimmu.2019.00402

Transcriptional Analysis of the Human IgE-Expressing Plasma Cell Differentiation Pathway
Cited by: 10
Author(s): Faruk Ramadani, H. J. M. Bowen, Hannah Gould, David Fear
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.18646

Identification of two novel biomarkers of rectal carcinoma progression and prognosis via co-expression network analysis
Cited by: 19
Author(s): Min Sun, Taojiao Sun, Zhong He, Bin Xiong
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.624319

Grafting Delays Watermel on Fruit Ripening by Altering Gene Expression of ABA Centric Phytohormone Signaling
Cited by: 5
Author(s): Sheng Guo, Honghe Sun, Jiaxing Tian, Guoyu Zhang, Guoyi Gong, Yi Ren, Jie Zhang, Maoying Li, Haiying Zhang, Haizhen Li, Yong Xu
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.616338

Interspecific Variation in the Unsaturation Level of Seed Oils Were Associated With the Expression Pattern Shifts of Duplicated Desaturase Genes and the Potential Role of Other Regulatory Genes
Cited by: 3
Author(s): Mengli Wang, Lexuan Gao, Gengyun Li, Chengchuan Zhou, Jinjing Jian, Zhen Xing, Yuguo Wang, Wenju Zhang, Song Zhang, Yonghong Hu, Ji Hyun Yang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2020.528108

Comparative Genomics of Spatholobus suberectus and Insight Into Flavonoid Biosynthesis
Cited by: 5
Author(s): Shuangshuang Qin, Kunhua Wei, Zhan-Hu Cui, Ying Liang, Mingjie Li, Li Gu, Chuyun Yang, Xiaolei Zhou, Linxuan Li, Wei Xü, Can Liu, Miao Jin, Zhongyi Zhang
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2019.01459

A Combined Transcriptomic and Genomic Analysis Identifies a Gene Signature Associated With the Response to Anti-TNF Therapy in Rheumatoid Arthritis
Cited by: 22
Author(s): Adrià Aterido, Juan D. Cañete, Jesús Tornero, Francisco J. Blanco, Benjamín Fernández‐Gutiérrez, Carolina Pérez, Mercedes Alperi-López, A Olivé, Hèctor Corominas, Víctor M. Martínez‐Taboada, Inmaculada Fernández González, Antonio Fernández‐Nebro, Alba Erra, María López-Lasanta, Mireia López-Corbeto, Núria Palau, Sara Marsal, Antonio Julià
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.01795

Multiple Processes May Involve in the IgG4-RD Pathogenesis: An Integrative Study via Proteomic and Transcriptomic Analysis
Cited by: 8
Author(s): Shaozhe Cai, Yu Chen, Shaochong Lin, Cong Ye, Fang Zheng, Lingli Dong
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2021.702733

Transcriptome Analysis of CCR9+ T Helper Cells From Primary Sjögren’s Syndrome Patients Identifies CCL5 as a Novel Effector Molecule
Cited by: 8
Author(s): Anneline C. Hinrichs, Sofie L M Blokland, Ana P Lopes, Catharina G K Wichers, Aike A. Kruize, Aridaman Pandit, Timothy R D J Radstake, Joël A G van Roon
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.624614

Predicted Disease-Specific Immune Infiltration Patterns Decode the Potential Mechanisms of Long Non-Coding RNAs in Primary Sjogren’s Syndrome
Cited by: 6
Author(s): Caiqi Cheng, Jun Zhou, Ruiying Chen, Yo Shibata, Ryouichi Tanaka, Jun Wang, Jiaming Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2015.00829

Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach
Cited by: 16
Author(s): Wenchuan Xie, Junfeng Huang, Yang Liu, Rao Jianan, Da Luo, Miao He
Software Mentions: 1
Published: about 11 years ago

10.3389/fimmu.2021.659193

SDF4 Is a Prognostic Factor for 28-Days Mortality in Patients With Sepsis via Negatively Regulating ER Stress
Cited by: 10
Author(s): Tingting Zhu, Qun Su, Cuili Wang, Lingling Shen, Hongjun Chen, Shi Feng, Xing Peng, Siyu Chen, Yucheng Wang, Hong Jiang, Jianghua Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-1320-z

Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita
Cited by: 69
Author(s): Vera Brekhman, Assaf Malik, Brian J. Haas, Noa Sher, Tamar Lotan
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-019-6035-0

MiR-190a potentially ameliorates postoperative cognitive dysfunction by regulating Tiam1
Cited by: 18
Author(s): Qiang Liu, Aisheng Hou, Yongyi Zhang, Ying Guo, Jingjing Li, Yinghao Yao, Kaimeng Niu, Hao Li, Yunlong Ma, Jiangbei Cao
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2020.00857

Identification of Gene Signatures for Diagnosis and Prognosis of Hepatocellular Carcinomas Patients at Early Stage
Cited by: 14
Author(s): Xiaoning Gan, Yue Luo, Guanqi Dai, Junhao Lin, Xinhui Liu, Zhang Xiang-qun, Aimin Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.00981

Identification of KIAA0513 and Other Hub Genes Associated With Alzheimer Disease Using Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Min Zhu, Longfei Jia, Fangyu Li, Jianping Jia
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2018.00102

Identification and Functional Analysis of Long Intergenic Non-coding RNAs Underlying Intramuscular Fat Content in Pigs
Cited by: 25
Author(s): Cheng Zou, Li Long, Xiangdong Cheng, Cencen Li, Yuhua Fu, Fang Cui, Changchun Li
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2020.00378

Coexpression Analysis Reveals Dynamic Modules Regulating the Growth and Development of Cirri in the Rattans (Calamus simplicifolius and Daemonorops jenkinsiana)
Cited by: 4
Author(s): Jiongliang Wang, Xuelian Ma, Jiaotong Yang, Yanan Hui, Jiajie She, Tian Tian, Zhongqiu Li, Wenying Xu, Zhimin Gao, Zhen Su, Hansheng Zhao
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.00342

Identification of Crucial Genes Associated With Immune Cell Infiltration in Hepatocellular Carcinoma by Weighted Gene Co-expression Network Analysis
Cited by: 42
Author(s): Dengchuan Wang, Jun Li, Shengshuo Liu, Wenli Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.01408

Identification of Prognostic Genes in Leiomyosarcoma by Gene Co-Expression Network Analysis
Cited by: 4
Author(s): Jun Yang, Cuili Li, Jianyi Zhou, Xiaoquan Liu, Shaohua Wang
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2020.604849

Network Analysis Combining Proteomics and Metabolomics Reveals New Insights Into Early Responses of Eucalyptus grandis During Rust Infection
Cited by: 11
Author(s): Alline Sekiya, Felipe Garbelini Marques, Thiago Falda Leite, Thaís Regiani Cataldi, Fabrício Edgar de Moraes, Ana Lúcia Mendes Pinheiro, Mônica Teresa Veneziano Labate, Carlos Alberto Labate
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2021.695399

Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution
Cited by: 14
Author(s): Katie Ovens, B. Frank Eames, Ian McQuillan
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-019-5978-5

Long non-coding RNAs and their potential functions in Ligon-lintless-1 mutant cotton during fiber development
Cited by: 16
Author(s): Haron Salih, Wenfang Gong, Shoupu He, Xia Wang, Magwanga Richard Odongo, Xinying Du
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-015-1238-5

Gene coexpression networks reveal key drivers of phenotypic divergence in porcine muscle
Cited by: 10
Author(s): Xiao Ling Zhao, Zhaoyang Liu, Qingxin Liu
Software Mentions: 1
Published: over 11 years ago

10.3389/fpls.2021.705321

A Tissue-Specific Landscape of Alternative Polyadenylation, lncRNAs, TFs, and Gene Co-expression Networks in Liriodendron chinense
Cited by: 9
Author(s): Zhonghua Tu, Yu-Fang Shen, Shaoying Wen, Huanhuan Liu, Lingmin Wei, Huogen Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00764

Comprehensive Construction of a Circular RNA-Associated Competing Endogenous RNA Network Identified Novel Circular RNAs in Hypertrophic Cardiomyopathy by Integrated Analysis
Cited by: 14
Author(s): Qi Guo, Junjie Wang, Rong Sun, Zhijian He, Qian Chen, Wenhao Liu, Maoxiong Wu, Jigang Bao, Zhaoyu Liu, Jingfeng Wang, Yuling Zhang
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.00092

De novo Transcriptome Assembly of Chinese Kale and Global Expression Analysis of Genes Involved in Glucosinolate Metabolism in Multiple Tissues
Cited by: 19
Author(s): Shi-Fang Wu, Jing Liu, Guoju Chen, Hancai Chen, Bihao Cao, Changming Chen
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-020-07106-8

Transcriptional landscape of the embryonic chicken Müllerian duct
Cited by: 8
Author(s): Zahida Yesmin Roly, Rasoul Godini, Martín Estermann, Andrew T. Major, Roger Pocock, Craig A. Smith
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2019.00874

Data Integration in Poplar: ‘Omics Layers and Integration Strategies
Cited by: 13
Author(s): Deborah Weighill, Timothy J. Tschaplinski, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 1
Published: about 7 years ago

10.1128/mSystems.00499-20

Dietary Intervention Reverses Fatty Liver and Altered Gut Microbiota during Early-Life Undernutrition
Cited by: 3
Author(s): Kylynda C. Bauer, Kelsey E. Huus, Eric Brown, Tahereh Bozorgmehr, Charisse Petersen, Mihai Cirstea, Sarah E. Woodward, John J. McCoy, Jeong Ki Hun, Reinald Pamplona, Victòria Ayala, B. Brett Finlay
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2017.01371

Phenotypic and Comparative Transcriptome Analysis of Different Ploidy Plants in Dendrocalamus latiflorus Munro
Cited by: 11
Author(s): Guirong Qiao, Mingying Liu, Kunlin Song, Haiying Li, Haiming Yang, Yafang Yin, Renying Zhuo
Software Mentions: 1
Published: about 9 years ago

10.3389/fgene.2021.608017

Identification of Core Genes Related to Progression and Prognosis of Hepatocellular Carcinoma and Small-Molecule Drug Predication
Cited by: 5
Author(s): Nan Jiang, Xinzhuo Zhang, Da‐Lian Qin, Jing Yang, Anguo Wu, Long Wang, Yueshan Sun, Hong Li, Xianfeng Shen, Jing Lin, Fahsai Kantawong, Jianming Wu
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2018.00508

Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response
Cited by: 32
Author(s): Alexandra Maertens, Vy Tran, André Kleensang, Thomas Hartung
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2019.01398

Identification of the Key Factors Related to Bladder Cancer by lncRNA-miRNA-mRNA Three-Layer Network
Cited by: 13
Author(s): Xiaoxia Wang, Yanrui Ding, Jie Wang, Yanyan Wu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2021.668736

Comparison of Transcriptional Response of C3 and C4 Plants to Drought Stress Using Meta-Analysis and Systems Biology Approach
Cited by: 7
Author(s): Ahmad Tahmasebi, Ali Niazi‎
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2018.00406

De novo Mutations (DNMs) in Autism Spectrum Disorder (ASD): Pathway and Network Analysis
Cited by: 37
Author(s): Aitana Alonso-González, Cristina Rodríguez-Fontenla, Ángel Carracedo
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2018.01139

The Galling Truth: Limited Knowledge of Gall-Associated Volatiles in Multitrophic Interactions
Cited by: 13
Author(s): Renée M. Borges
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2021.615284

Comparative Analyses of Full-Length Transcriptomes Reveal Gnetum luofuense Stem Developmental Dynamics
Cited by: 7
Author(s): Chen Hou, Huiming Lian, Yanling Cai, Yingli Wang, Dongcheng Liang, Boxiang He
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.680120

Transcriptome Co-expression Network Analysis Identifies Key Genes Regulating Conchosporangia Maturation of Pyropia haitanensis
Cited by: 3
Author(s): Yi-Sheng Lin, Kai Xu, Yan Xu, Dehua Ji, Changsheng Chen, Wenlei Wang, Chaotian Xie
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.695625

Translational Proteomics Analysis of Anthracycline-Induced Cardiotoxicity From Cardiac Microtissues to Human Heart Biopsies
Cited by: 11
Author(s): Nhan Nguyen, Tancredo Augusto Feitosa de Souza, Marcha Verheijen, Hans Gmuender, Nathalie Selevsek, Ralph Schlapbach, Jos Kleinjans, Danyel Jennen
Software Mentions: 1
Published: over 5 years ago

10.1111/acel.13414

Epigenetic clock and methylation studies in elephants
Cited by: 31
Author(s): Natalia A. Prado, Janine L. Brown, Joseph A. Zoller, Amin Haghani, Mingjia Yao, Lora Bagryanova, Michael G. Campana, Jesús E. Maldonado, Kenneth Raj, Dennis L. Schmitt, Todd R. Robeck, Steve Horvath
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.01359

Transcriptome Changes of Mycobacterium marinum in the Process of Resuscitation From Hypoxia-Induced Dormancy
Cited by: 6
Author(s): Jun Jiang, Lin Chen, Junli Zhang, Yuchen Wang, Lianfang Shen, Kun Yang, Wenjun Xiao, Li Yao, Lu Zhang, Jun Liu
Software Mentions: 1
Published: over 6 years ago

10.3389/fendo.2020.570604

Immune Cell Confrontation in the Papillary Thyroid Carcinoma Microenvironment
Cited by: 56
Author(s): Zhenyu Xie, Xin Li, Yuzhen He, Song Wu, Shiyue Wang, Jing Sun, Yuchen He, Yu Lun, Jian Zhang
Software Mentions: 1
Published: about 6 years ago

10.1186/s40246-021-00350-3

Identification of subgroups along the glycolysis-cholesterol synthesis axis and the development of an associated prognostic risk model
Cited by: 4
Author(s): Enchong Zhang, Yijing Chen, Shurui Bao, Xueying Hou, Jing Hu, Oscar Yong Nan Mu, Yi Song, Liping Shan
Software Mentions: 1
Published: about 5 years ago

10.3389/fendo.2021.666393

METTL3 Is Involved in the Development of Graves’ Disease by Inducing SOCS mRNA m6A Modification
Cited by: 6
Author(s): Ronghua Song, Peng Du, Chaoqun Gao, Xuerong Liu, Jinan Zhang
Software Mentions: 1
Published: about 5 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479