cran: WGCNA | Projects | Ecosyste.ms: Papers

10.1038/s41388-021-01859-6

LncRNA MIR17HG promotes colorectal cancer liver metastasis by mediating a glycolysis-associated positive feedback circuit
Cited by: 39
Author(s): Senlin Zhao, Bingjie Guan, Yushuai Mi, Debing Shi, Ping Wei, Yanzi Gu, Sanjun Cai, Ye Xu, Xinxiang Li, Dongwang Yan, Mingzhu Huang, Dawei Li
Software Mentions: 1
Published: almost 3 years ago

10.1186/s12866-020-01939-9

Targeting the honey bee gut parasite Nosema ceranae with siRNA positively affects gut bacteria
Cited by: 12
Author(s): Qiang Huang, Jay D. Evans
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12883-021-02156-1

Identification of upregulated NF-κB inhibitor alpha and IRAK3 targeting lncRNA following intracranial aneurysm rupture-induced subarachnoid hemorrhage
Cited by: 8
Author(s): Wei Leng, Dan Fan, Zhong Ren, Qiaoying Li
Software Mentions: 1
Published: about 3 years ago

10.1186/s40360-019-0288-8

Identification of novel candidate indicators for assessing zinc status during pregnancy in mice from microarray data
Cited by: 0
Author(s): Wei Xu, Hongyan Wu, Shang Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-019-1900-1

Genome-wide transcriptomic analysis of a desert willow, Salix psammophila, reveals the function of hub genes SpMDP1 and SpWRKY33 in drought tolerance
Cited by: 10
Author(s): Huixia Jia, Zening Jin, Jianbo Li, Peng Sun, Yahong Zhang, Xuebing Xin, Mengzhu Lu, Jianjun Hu
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12870-020-02513-1

Comparative analysis of full-length transcriptomes based on hybrid population reveals regulatory mechanisms of anthocyanin biosynthesis in sweet potato (Ipomoea batatas (L.) Lam)
Cited by: 6
Author(s): Zhen Qin, Fuyun Hou, Aixian Li, Shuxu Dong, Chengxing Huang, Zhang Li-ming
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12870-017-1170-8

Comprehensive transcriptome analysis reveals distinct regulatory programs during vernalization and floral bud development of orchardgrass (Dactylis glomerata L.)
Cited by: 26
Author(s): Guangyan Feng, Linkai Huang, Ji Li, Jianping Wang, Lei Xu, Ling Pan, Xinxin Zhao, Xia Wang, Ting Huang, Xinquan Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-021-03152-w

Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances
Cited by: 12
Author(s): Shi Sun, Miaomiao Lin, Xiujuan Qi, Jinyong Chen, Hongcang Gu, Yunpeng Zhong, Lei Sun, Muhammad Abid, Danfeng Bai, Chun-Gen Hu, Jinbao Fang
Software Mentions: 1
Published: almost 3 years ago

10.1186/s12870-019-1898-4

The R2R3-MYB transcription factor PaMYB10 is involved in anthocyanin biosynthesis in apricots and determines red blushed skin
Cited by: 46
Author(s): Wanpeng Xi, Jing Feng, Yu Liu, Shikui Zhang, Guohua Zhao
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12870-020-02437-w

Long non-coding RNAs in the alkaline stress response in sugar beet (Beta vulgaris L.)
Cited by: 11
Author(s): Chunlei Zou, Yübo Wang, Bin Wang, Dan Liú, Lei Liu, Zhongtao Gai, Caifeng Li
Software Mentions: 1
Published: about 4 years ago

10.1007/s11306-020-01733-8

Evaluation of the use of untargeted metabolomics in the safety assessment of genetically modified crops
Cited by: 17
Author(s): Mohamed Bedair, Kevin C. Glenn
Software Mentions: 1
Published: over 3 years ago

10.1186/s12870-020-02798-2

Genome-wide identification and comprehensive analysis of NAC family genes involved in fruit development in kiwifruit (Actinidia)
Cited by: 15
Author(s): Dongfeng Jia, Zhiqiang Jiang, Haihui Fu, Lu Chen, Guanglian Liao, Yanqun He, Chunhui Huang, Xiaobiao Xu
Software Mentions: 1
Published: over 3 years ago

10.1186/s12870-019-2186-z

Comparative physiological, metabolomic, and transcriptomic analyses reveal developmental stage-dependent effects of cluster bagging on phenolic metabolism in Cabernet Sauvignon grape berries
Cited by: 31
Author(s): Ruonan Sun, Guodong Cheng, Qiang Li, Yanrong Zhu, Xue Zhang, Yu Wang, Yuan He, Siyu Li, Lei He, Chen Wu, Qiu-Hong Pan, Chang‐Qing Duan, Jun Wang
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-020-2314-9

Transcriptome co-expression network analysis identifies key genes and regulators of ripening kiwifruit ester biosynthesis
Cited by: 20
Author(s): Aidi Zhang, Qiuyun Zhang, Jianzhao Li, Hansheng Gong, Xinguang Fan, Yanqing Yang, Xiaofen Liu, Yin X
Software Mentions: 1
Published: about 4 years ago

10.1186/s12870-021-02879-w

Genome-wide analysis and expression profile of the bZIP gene family in poplar
Cited by: 48
Author(s): Kai Zhao, Ching Song, Wenjing Yao, Zihao Cheng, Boru Zhou, Tingbo Jiang
Software Mentions: 1
Published: about 3 years ago

10.1186/s12870-021-03206-z

Genome-wide identification and analysis of WRKY gene family in maize provide insights into regulatory network in response to abiotic stresses
Cited by: 27
Author(s): Weixin Hu, Qiaoyu Ren, Yali Chen, Guoliang Xu, Yexiong Qian
Software Mentions: 1
Published: over 2 years ago

10.1186/s12870-020-02578-y

Scion genotypes exert long distance control over rootstock transcriptome responses to low phosphate in grafted grapevine
Cited by: 15
Author(s): Antoine Gautier, Noé Cochetel, Isabelle Merlin, Cyril Hévin, Virginie Lauvergeat, Philippe Vivin, Alain Mollier, Nathalie Ollat, Sarah Jane Cookson
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12870-021-02986-8

Discovery of genes involved in anthocyanin biosynthesis from the rind and pith of three sugarcane varieties using integrated metabolic profiling and RNA-seq analysis
Cited by: 11
Author(s): Ni Yang, Haimei Chen, Di Liu, Lihui Zeng, Pinghua Chen, Chang Liu
Software Mentions: 1
Published: about 3 years ago

10.1186/s12870-016-0804-6

Transcriptomic network analyses of leaf dehydration responses identify highly connected ABA and ethylene signaling hubs in three grapevine species differing in drought tolerance
Cited by: 53
Author(s): Daniel Hopper, Ryan Ghan, Karen Schlauch, Grant R. Cramer
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-020-02715-7

Comparative cellular, physiological and transcriptome analyses reveal the potential easy dehulling mechanism of rice-tartary buckwheat (Fagopyrum Tararicum)
Cited by: 10
Author(s): Hongyou Li, Chaoxin Wu, Qiuyu Lv, Taoxiong Shi, Qijiao Chen
Software Mentions: 1
Published: over 3 years ago

10.1186/s12870-018-1497-9

Global dissection of alternative splicing uncovers transcriptional diversity in tissues and associates with the flavonoid pathway in tea plant (Camellia sinensis)
Cited by: 38
Author(s): Junyan Zhu, Xuewen Wang, Qingshan Xu, Sheng Zhao, Yuling Tai, Chaoling Wei
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-020-02460-x

The differential expression patterns of paralogs in response to stresses indicate expression and sequence divergences
Cited by: 7
Author(s): Shuaibin Lian, Yongjie Zhou, Zixiao Liu, Andong Gong, Lin Cheng
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12870-021-02952-4

Explore the gene network regulating the composition of fatty acids in cottonseed
Cited by: 7
Author(s): Lihong Ma, Xinqi Cheng, Chuan Wang, Xinyu Zhang, Fei Xue, Yanjun Li, Qian Zhu, Jie Sun, Feng Liu
Software Mentions: 1
Published: about 3 years ago

10.1186/s12870-021-02961-3

Analysis of miRNA-mediated regulation of flowering induction in Lilium × formolongi
Cited by: 4
Author(s): Qian Zhang, Yuqian Zhao, Xue Gao, Guanqing Jia
Software Mentions: 1
Published: about 3 years ago

10.1186/s12870-019-2125-z

PI signal transduction and ubiquitination respond to dehydration stress in the red seaweed Gloiopeltis furcata under successive tidal cycles
Cited by: 10
Author(s): Shun Liu, Zi‐Min Hu, Quansheng Zhang, Xiaoqi Yang, Alan T. Critchley, Delin Duan
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-021-03133-z

Comparative transcriptome analysis reveals regulatory network and regulators associated with proanthocyanidin accumulation in persimmon
Cited by: 10
Author(s): Qingyou Zheng, Wenxing Chen, Man Luo, Lingfei Xu, Qinglin Zhang, Zhitian Luo
Software Mentions: 1
Published: almost 3 years ago

10.1186/s12870-019-2192-1

Full-length transcriptome sequencing reveals the low-temperature-tolerance mechanism of Medicago falcata roots
Cited by: 40
Author(s): Guowen Cui, Hua Chai, Hang Yin, Mei Yang, Guofu Hu, Mingying Guo, Rugeletu Yi, Pan Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-020-02442-z

Comparative transcriptome analysis between inbred and hybrids reveals molecular insights into yield heterosis of upland cotton
Cited by: 23
Author(s): Kashif Shahzad, Xuexian Zhang, Liping Guo, Ting Qi, Lisheng Bao, Meng Zhang, Bingbing Zhang, Hailin Wang, Huini Tang, Xin Qiao, Juanjuan Feng, Jianyong Wu, Chaozhu Xing
Software Mentions: 1
Published: almost 4 years ago

10.1186/1755-8794-6-4

Systems analysis of human brain gene expression: mechanisms for HIV-associated neurocognitive impairment and common pathways with Alzheimer’s disease
Cited by: 55
Author(s): Andrew J. Levine, Jeremy A. Miller, Paul Shapshak, Benjamin B. Gelman, Elyse J. Singer, Charles H. Hinkin, Deborah Commins, Susan Morgello, Igor Grant, Steve Horvath
Software Mentions: 1
Published: over 11 years ago

10.1186/s12870-020-02569-z

Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice
Cited by: 31
Author(s): Yinghua Pan, He Liang, Lijun Gao, Gaoxing Dai, Weiwei Chen, Yang Xiao-ling, Dongjin Qing, Ju Gao, Hao Wu, Juan Huang, Weiyong Zhou, Chengcui Huang, Yuntao Liang, Gaofeng Deng
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12870-020-02606-x

Transcriptome analysis provides new insights into the transcriptional regulation of methyl jasmonate-induced flavonoid biosynthesis in pear calli
Cited by: 34
Author(s): Apekshika T Premathilake, Junbei Ni, Jiemin Shen, Songling Bai, Yuanwen Teng
Software Mentions: 1
Published: over 3 years ago

10.1186/s12870-018-1544-6

Canopy attachment position influences metabolism and peel constituency of European pear fruit
Cited by: 20
Author(s): Sara Serra, Nathanael Sullivan, James P. Mattheis, Stefano Musacchi, David R. Rudell
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2229-12-245

OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize
Cited by: 46
Author(s): Christian Colmsee, Martin Mascher, Tobias Czauderna, Anja Hartmann, Urte Schlüter, Nina Zellerhoff, J. E. Schmitz, Andrea Bräutigam, Thea R. Pick, Philipp Alter, Manfred Gahrtz, Sandra A. Witt, Alisdair R. Fernie, Frederik Börnke, Holger Fahnenstich, Marcel Bucher, Thomas Dresselhaus, Andreas P.M. Weber, Falk Schreiber, Uwe Scholz, Uwe Sonnewald
Software Mentions: 1
Published: over 11 years ago

10.1186/s12919-016-0009-x

Using gene expression data to identify causal pathways between genotype and phenotype in a complex disease: application to Genetic Analysis Workshop 19
Cited by: 3
Author(s): Holly F. Ainsworth, Heather J. Cordell
Software Mentions: 1
Published: over 7 years ago

10.1186/1753-6561-5-S2-S3

Nonlinear gene cluster analysis with labeling for microarray gene expression data in organ development
Cited by: 7
Author(s): Martin Ehler, Vinodh N. Rajapakse, Barry R. Zeebèrg, Brian P. Brooks, Jacob D. Brown, Wojciech Czaja, Robert F. Bonner
Software Mentions: 1
Published: about 13 years ago

10.1186/s13104-019-4559-7

A seed germination transcriptomic study contrasting two soybean genotypes that differ in terms of their tolerance to the deleterious impacts of elevated temperatures during seed fill
Cited by: 14
Author(s): Jason D. Gillman, Jessica J. Biever, Songqing Ye, William G. Spollen, Scott A. Givan, Zhen Lyu, Trupti Joshi, James R. Smith, Felix B. Fritschi
Software Mentions: 1
Published: almost 5 years ago

10.18632/aging.202996

Circular RNA circitga7 accelerates glioma progression via miR-34a-5p/VEGFA axis
Cited by: 10
Author(s): Ling Qi, Weiyao Wang, Guifang Zhao, Hong Jiang, Yu Zhang, Donghai Zhao, Hong Jin, Haojun Yu, Haidong Xu
Software Mentions: 1
Published: about 3 years ago

10.1186/1756-0500-5-265

Human gene correlation analysis (HGCA): A tool for the identification of transcriptionally co-expressed genes
Cited by: 24
Author(s): Ioannis Michalopoulos, Georgios A. Pavlopoulos, Apostolos Malatras, Alexandros Karelas, Myrto Kostadima, Reinhard Schneider, Σοφία Κοσσίδα
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12918-015-0165-z

Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data
Cited by: 10
Author(s): Ricardo de Matos Simoes, Sabine Dalleau, Kate E. Williamson, Frank Emmert‐Streib
Software Mentions: 1
Published: about 9 years ago

10.1186/s12920-021-01012-y

Multivariate transcriptome analysis identifies networks and key drivers of chronic lymphocytic leukemia relapse risk and patient survival
Cited by: 2
Author(s): Tiara Griffen, Eric B. Dammer, Courtney D. Dill, Kaylin Carey, Corey Young, Sha’Kayla Nunez, Adaugo Q. Ohandjo, Steven M. Kornblau, James W. Lillard
Software Mentions: 1
Published: almost 3 years ago

10.1186/1752-0509-8-S2-S7

Pathway network inference from gene expression data
Cited by: 26
Author(s): Ignacio Ponzoni, María José Nueda, Sonia Tarazona, Stefan Götz, David Montaner, Julieta Sol Dussaut, Joaquín Dopazo, Ana Conesa
Software Mentions: 1
Published: about 10 years ago

10.1186/s12920-021-00890-6

Identification of monocyte-associated genes as predictive biomarkers of heart failure after acute myocardial infarction
Cited by: 11
Author(s): Qixin Chen, Qijin Yin, Junxian Song, Chuan‐Fen Liu, Chang Seop Hong, Sufang Li
Software Mentions: 1
Published: over 3 years ago

10.1186/1752-0509-8-S2-S5

Weighted Interaction SNP Hub (WISH) network method for building genetic networks for complex diseases and traits using whole genome genotype data
Cited by: 27
Author(s): Lisette J. A. Kogelman, Haja N. Kadarmideen
Software Mentions: 1
Published: over 10 years ago

10.1186/1752-0509-5-43

Gene networks associated with conditional fear in mice identified using a systems genetics approach
Cited by: 74
Author(s): Christopher C. Park, Greg D. Gale, Simone de Jong, Anatole Ghazalpour, Brian J. Bennett, Charles R. Farber, Peter Langfelder, Andy Lin, Khan Ah, Eleazar Eskin, Steve Horvath, Aldons J. Lusis, Roel A. Ophoff, Desmond J. Smith
Software Mentions: 1
Published: about 13 years ago

10.1186/s13040-016-0105-5

Mango: combining and analyzing heterogeneous biological networks
Cited by: 2
Author(s): Jennifer Chang, Hyejin Cho, Hui‐Hsien Chou
Software Mentions: 1
Published: almost 8 years ago

10.1155/2021/9987990

Identification of Prognostic Genes in Neuroblastoma in Children by Weighted Gene Coexpression Network Analysis
Cited by: 0
Author(s): Jun Yang, Ying Zhang, Jianyi Zhou, Shaohua Wang
Software Mentions: 1
Published: almost 3 years ago

10.1186/s12920-019-0608-2

A new method for mining information of co-expression network based on multi-cancers integrated data
Cited by: 4
Author(s): Mi-Xiao Hou, Ying-Lian Gao, Jin-Xing Liu, Junliang Shang, Rong Zhu, Shasha Yuan
Software Mentions: 1
Published: over 4 years ago

10.1093/brain/awv127

First effects of rising amyloid-β in transgenic mouse brain: synaptic transmission and gene expression
Cited by: 64
Author(s): Damian M. Cummings, Wenfei Liu, Erik Portelius, Bayram Sevinç, Marina V. Yasvoina, Hinze Ho, Hélène Smits, Shabinah S. Ali, Rivka Steinberg, Chrysia-Maria Pegasiou, Owain T. James, Mar Matarı́n, Jill C. Richardson, Henrik Zetterberg, Kaj Blennow, John Hardy, Dervis A. Salih, Frances A. Edwards
Software Mentions: 1
Published: about 9 years ago

10.1093/brain/awaa270

Differences in network controllability and regional gene expression underlie hallucinations in Parkinson’s disease
Cited by: 27
Author(s): Angeliki Zarkali, Peter McColgan, Mina Ryten, Regina H Reynolds, Louise‐Ann Leyland, Andrew J. Lees, Geraint Rees, Rimona S Weil
Software Mentions: 1
Published: over 3 years ago

10.1002/brb3.2309

Coexpression of the discoidin domain receptor 1 gene with oligodendrocyte‐related and schizophrenia risk genes in the developing and adult human brain
Cited by: 6
Author(s): Gerard Muntané, Marc Chillida, Selena Aranda, Arcadi Navarro, Elisabet Vilella
Software Mentions: 1
Published: almost 3 years ago

10.1186/1755-8794-4-5

Incorporating higher-order representative features improves prediction in network-based cancer prognosis analysis
Cited by: 18
Author(s): Shuangge Ma, Michael R. Kosorok, Jian Huang, Ying Dai
Software Mentions: 1
Published: over 13 years ago

10.1007/s00429-016-1338-2

Brain transcriptome atlases: a computational perspective
Cited by: 17
Author(s): Ahmed Mahfouz, Sjoerd M. H. Huisman, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.23219

Co-expression analysis revealed PTCH1-3'UTR promoted cell migration and invasion by activating miR-101-3p/SLC39A6 axis in non-small cell lung cancer: implicating the novel function of PTCH1
Cited by: 21
Author(s): Xuechao Wan, Zhe Kong, Kaili Chu, Chuanyou Yi, Jian Hu, Rui Qin, Chunxia Zhao, Fangqiu Fu, Hai Wu, Yao Li, Yan Huang
Software Mentions: 1
Published: over 6 years ago

10.1186/s13058-018-1043-6

Foxf2 plays a dual role during transforming growth factor beta-induced epithelial to mesenchymal transition by promoting apoptosis yet enabling cell junction dissolution and migration
Cited by: 19
Author(s): Nathalie Meyer-Schaller, Chantal Heck, Stefanie Tiede, M. Deniz Yilmaz, Gerhard Christofori
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-016-0171-z

Differential gene network analysis for the identification of asthma-associated therapeutic targets in allergen-specific T-helper memory responses
Cited by: 30
Author(s): Niamh M. Troy, Elysia M. Hollams, Patrick G. Holt, Anthony Bosco
Software Mentions: 1
Published: about 8 years ago

10.1186/s12935-017-0458-y

Integrated genomic characterization of cancer genes in glioma
Cited by: 22
Author(s): Aijun Liang, Bin Zhou, Wei Sun
Software Mentions: 1
Published: over 6 years ago

10.1186/s12920-018-0407-1

Identification of glioblastoma gene prognosis modules based on weighted gene co-expression network analysis
Cited by: 32
Author(s): Pengfei Xu, Jian Yang, Junhui Liu, Yang Xue, Jianming Liao, Fanen Yuan, Yang Xu, Baohui Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-021-02047-y

LRRK2 is a candidate prognostic biomarker for clear cell renal cell carcinoma
Cited by: 3
Author(s): Chunxiu Yang, Jingjing Pang, Jian Xu, He Pan, Yueying Li, Huainian Zhang, Huan Liu, Shu‐Yuan Xiao
Software Mentions: 1
Published: almost 3 years ago

10.1186/s12935-021-02052-1

GNRH1 and LTB4R might be novel immune-related prognostic biomarkers in clear cell renal cell carcinoma (ccRCC)
Cited by: 10
Author(s): Hua-Hui Wu, Xin Yan, Chen Zhao, Guo-Wei Du, Xiaojie Bai, Kurerban Tuoheti, Tong-Zu Liu
Software Mentions: 1
Published: almost 3 years ago

10.1186/s12920-020-0702-5

Gene co-expression networks are associated with obesity-related traits in kidney transplant recipients
Cited by: 4
Author(s): Rosario B. Jaime-Lara, Abhrarup Roy, Yupeng Wang, Ansley Grimes Stanfill, Ann K. Cashion, Paule V. Joseph
Software Mentions: 1
Published: about 4 years ago

10.1186/s12935-021-01880-5

Silencing SHMT2 inhibits the progression of tongue squamous cell carcinoma through cell cycle regulation
Cited by: 12
Author(s): Yan Liao, Fang Wang, Yadong Zhang, Hao Cai, Song Fan, Jinsong Hou
Software Mentions: 1
Published: about 3 years ago

10.1186/s12920-015-0098-9

Co-expression network of neural-differentiation genes shows specific pattern in schizophrenia
Cited by: 39
Author(s): Mariana Maschietto, Ana Carolina Tahira, Renato Puga, Leandro Lima, Daniel Mariani, Bruna Paulsen, Paulo Belmonte-de-Abreu, Henrique Cursino Vieira, Ana Cristina Victorino Krepischi, Dirce Maria Carraro, Joana Almeida Palha, Stevens K. Rehen, Helena Brentani
Software Mentions: 1
Published: about 9 years ago

10.1186/1755-8794-7-51

Genetic network identifies novel pathways contributing to atherosclerosis susceptibility in the innominate artery
Cited by: 9
Author(s): Jody Albright, Pamela M. Quizon, Aldons J. Lusis, Brian J. Bennett
Software Mentions: 1
Published: almost 10 years ago

10.1002/cam4.3369

Microarray profiling of differentially expressed lncRNAs and mRNAs in lung adenocarcinomas and bioinformatics analysis
Cited by: 12
Author(s): Fei He, Liping Huang, Qiuping Xu, Weimin Xiong, Shuang Liu, Huimin Yang, Wenzhou Lu, Rendong Xiao, Zhijian Hu, Lin Cai
Software Mentions: 1
Published: over 3 years ago

10.1002/cam4.3240

Development and validation of an immune‐related prognostic signature in lung adenocarcinoma
Cited by: 69
Author(s): Sijin Sun, Wei Guo, Zhen Wang, Xin Wang, Guochao Zhang, Hao Zhang, Renda Li, Yibo Gao, Bin Qiu, Fengwei Tan, Yushun Gao, Qi Xue, Shugeng Gao, Jie He
Software Mentions: 1
Published: almost 4 years ago

10.1186/s40170-016-0143-y

Integration of omics: more than the sum of its parts
Cited by: 84
Author(s): Joerg M. Buescher, Edward M. Driggers
Software Mentions: 1
Published: about 8 years ago

10.1155/2020/3946913

Metabolic Modulation and Potential Biomarkers of the Prognosis Identification for Severe Aortic Stenosis after TAVR by a Metabolomics Study
Cited by: 6
Author(s): Yanbiao Liao, Chang Liu, Tingting Xiong, Mingyue Zhao, Wen Zheng, Yuan Feng, Yijian Li, Yuanweixiang Ou, Zhengang Zhang, Yong Peng, Jiafu Wei, Qiao Li, Wei Meng, Xiaojing Liu, Mao Chen
Software Mentions: 1
Published: over 3 years ago

10.1155/2021/6651009

Candidate Genes Identified in Systemic Sclerosis-Related Pulmonary Arterial Hypertension Were Associated with Immunity, Inflammation, and Cytokines
Cited by: 5
Author(s): Zhixiao Xu, Jiaxing Ruan, Lingyun Pan, Chengshui Chen
Software Mentions: 1
Published: about 3 years ago

10.26508/lsa.202101091

Serum proteomics reveals disorder of lipoprotein metabolism in sepsis
Cited by: 2
Author(s): Xi Liang, Tianzhou Wu, Qi Chen, Jing Jiang, Yongpo Jiang, Yiwen Ruan, Huaping Zhang, Sheng Zhang, Zhang Chao, Peng Chen, Yuhang Lv, Jiaojiao Xin, Dongyan Shi, Xin Chen, Li Jun, Yinghe Xu
Software Mentions: 1
Published: over 2 years ago

10.1007/s00335-016-9656-5

Uncovering the liver’s role in immunity through RNA co-expression networks
Cited by: 11
Author(s): Kylie K. Harrall, Katerina Kechris, Boris Tabakoff, Paula L. Hoffman, Lisa M. Hines, Hidekazu Tsukamoto, Michal Pravenec, Morton P. Printz, Laura Saba
Software Mentions: 1
Published: almost 8 years ago

10.1097/MD.0000000000009738

Identification of gene expression models for laryngeal squamous cell carcinoma using co-expression network analysis
Cited by: 9
Author(s): Chao Yang, Shufang Wang, Xiangli Yang, Lin Wang, Lin Niu, Jixiang Liu
Software Mentions: 1
Published: over 6 years ago

10.4317/medoral.24385

Whole exome sequencing and system biology analysis support the "two-hit" mechanism in the onset of Ameloblastoma
Cited by: 4
Author(s): Yueqi Shi, Mengyu Li, Yinglan Yu, Yuqiong Zhou, Shaoyi Wang
Software Mentions: 1
Published: over 3 years ago

10.3390/metabo11030161

Metabolomic Profiling Reveals Sex Specific Associations with Chronic Obstructive Pulmonary Disease and Emphysema
Cited by: 14
Author(s): Lucas A. Gillenwater, Katerina Kechris, Katherine Pratte, Nichole Reisdorph, Irina Petrache, Wassim W. Labaki, Wanda K. O’Neal, Jerry A. Krishnan, Victor E. Ortega, Dawn L. DeMeo, Russell P. Bowler
Software Mentions: 1
Published: about 3 years ago

10.3390/metabo9080157

Bronchoalveolar Lavage Fluid from COPD Patients Reveals More Compounds Associated with Disease than Matched Plasma
Cited by: 27
Author(s): Eitan Halper-Stromberg, Lucas A. Gillenwater, Charmion Cruickshank‐Quinn, Wanda K. O’Neal, Nichole Reisdorph, Irina Petrache, Yonghua Zhuang, Wassim W. Labaki, Jeffrey L. Curtis, James M. Wells, Stephen I. Rennard, Katherine Pratte, Prescott G. Woodruff, Kathleen A. Stringer, Katerina Kechris, Russell P. Bowler
Software Mentions: 1
Published: almost 5 years ago

10.3390/metabo9070145

Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS)
Cited by: 27
Author(s): Mary C. Playdon, Amit D. Joshi, Fred K. Tabung, Susan Cheng, Mir Henglin, Andy Kim, Tengda Lin, Eline H. van Roekel, Jiaqi Huang, Jan Krumsiek, Ying Wang, Ewy A. Mathé, Marinella Temprosa, Steven C. Moore, Bo Chawes, A. Heather Eliassen, Andrea Gsur, Marc J. Gunter, Sei Harada, Claudia Langenberg, Matej Orešič, Wei Perng, Wei Jie Seow, Oana A. Zeleznik
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12916-020-01741-4

Postpartum plasma metabolomic profile among women with preeclampsia and preterm delivery: implications for long-term health
Cited by: 10
Author(s): Xiumei Hong, Boyang Zhang, Liming Liang, Yan Zhang, Yuelong Ji, Guoying Wang, Hongkai Ji, Clary B. Clish, Irina Burd, Colleen Pearson, Barry Zuckerman, Frank B. Hu, Xiaobin Wang
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.202596

Integrative analysis of exosomal microRNA-149-5p in lung adenocarcinoma
Cited by: 7
Author(s): Wen Tian, Yang He, Baosen Zhou
Software Mentions: 1
Published: about 3 years ago

10.3390/metabo10120511

The Metabolomics of Childhood Atopic Diseases: A Comprehensive Pathway-Specific Review
Cited by: 17
Author(s): M.S. Schjødt, Gözde Gürdeniz, Bo Chawes
Software Mentions: 1
Published: over 3 years ago

Projects: cran: WGCNA

Papers Mentioning WGCNA 3,479