Ecosyste.ms: Papers

10.1038/s41398-018-0234-3

Identification and replication of RNA-Seq gene network modules associated with depression severity
Cited by: 33
Author(s): Trang T. Le, Jonathan Savitz, Hideo Suzuki, Masaya Misaki, T. Kent Teague, Bill C. White, Julie H. Marino, Graham B. Wiley, Patrick M. Gaffney, Wayne C. Drevets, Brett A. McKinney, Jerzy Bodurka
Software Mentions: 1
Published: about 6 years ago

10.1186/2049-2618-1-17

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships
Cited by: 230
Author(s): Ian Howard Mchardy, Maryam Goudarzi, Man‐Li Tong, Paul Ruegger, Emma Schwager, John R. Weger, Thomas G. Graeber, Justin L. Sonnenburg, Steve Horvath, Curtis Huttenhower, Dermot P. McGovern, Albert J. Fornace, James Borneman, Jonathan Braun
Software Mentions: 1
Published: over 11 years ago

10.1186/s12862-017-1036-6

Annotating long intergenic non-coding RNAs under artificial selection during chicken domestication
Cited by: 12
Author(s): Yun-Mei Wang, Haibo Xu, Mingshan Wang, Newton O. Otecko, Lingqun Ye, Dongdong Wu, Yaping Zhang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41398-018-0325-1

Dopamine perturbation of gene co-expression networks reveals differential response in schizophrenia for translational machinery
Cited by: 7
Author(s): Mark Z. Kos, Jubao Duan, Alan R. Sanders, Lucy Blondell, Eugene Drigalenko, Melanie A. Carless, Pablo V. Gejman, Harald H.H. Göring, Mgs
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12934-020-01349-6

Repeated fed-batch strategy and metabolomic analysis to achieve high docosahexaenoic acid productivity in Crypthecodinium cohnii
Cited by: 9
Author(s): Liangsen Liu, Fangzhong Wang, Guangsheng Pei, Jinyu Cui, Jinjin Diao, Mingming Lv, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 4 years ago

10.1007/s11306-017-1263-2

Estimation of metabolite networks with regard to a specific covariable: applications to plant and human data
Cited by: 9
Author(s): Georgios Bartzis, Joris Deelen, Júlio Maia, Wilco Ligterink, Henk W. M. Hilhorst, Jeanine J. Houwing-Duistermaat, Fred van Eeuwijk, Hae‐Won Uh
Software Mentions: 1
Published: about 7 years ago

10.1007/s11306-019-1511-8

Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [CO2] and temperature
Cited by: 21
Author(s): Jessica M. Wedow, Craig R. Yendrek, Tathyana Rachel Palo Mello, Silvana Creste, Carlos A. Martínez, Elizabeth A. Ainsworth
Software Mentions: 1
Published: over 5 years ago

10.1007/s11306-020-01733-8

Evaluation of the use of untargeted metabolomics in the safety assessment of genetically modified crops
Cited by: 17
Author(s): Mohamed Bedair, Kevin C. Glenn
Software Mentions: 1
Published: about 4 years ago

10.3390/metabo10120511

The Metabolomics of Childhood Atopic Diseases: A Comprehensive Pathway-Specific Review
Cited by: 17
Author(s): M.S. Schjødt, Gözde Gürdeniz, Bo Chawes
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41398-019-0492-8

Postmortem transcriptional profiling reveals widespread increase in inflammation in schizophrenia: a comparison of prefrontal cortex, striatum, and hippocampus among matched tetrads of controls with subjects diagnosed with schizophrenia, bipolar or major depressive disorder
Cited by: 107
Author(s): Thomas A. Lanz, Veronica Reinhart, Mark J. Sheehan, Stacey J. Sukoff Rizzo, Susan E. Bove, Larry C. James, Dmitri Volfson, David A. Lewis, Robin J. Kleiman
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.21262

Vemurafenib-resistance via de novo RBM genes mutations and chromosome 5 aberrations is overcome by combined therapy with palbociclib in thyroid carcinoma with BRAFV600E
Cited by: 38
Author(s): Zeus A. Antonello, Nancy Hsu, Manoj Bhasin, Giovanni Roti, Mukta Joshi, Paul Van Hummelen, Emily Ye, Agnes S. Lo, S. Ananth Karumanchi, Christine R. Bryke, Carmelo Nucera
Software Mentions: 1
Published: about 7 years ago

10.1038/s41398-019-0486-6

Dysregulation of a specific immune-related network of genes biologically defines a subset of schizophrenia
Cited by: 21
Author(s): Svenja V. Trossbach, Laura Hecher, David Schafflick, René Deenen, Ovidiu Popa, Tobias Lautwein, Sarah K. Tschirner, Karl Köhrer, Karin Fehsel, Irina Papazova, Berend Malchow, Alkomiet Hasan, Georg Winterer, Aurore Schmitt, Gerd Meyer zu Hörste, Peter Falkai, Carsten Korth
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo9070145

Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS)
Cited by: 27
Author(s): Mary C. Playdon, Amit D. Joshi, Fred K. Tabung, Susan Cheng, Mir Henglin, Andy Kim, Tengda Lin, Eline H. van Roekel, Jiaqi Huang, Jan Krumsiek, Ying Wang, Ewy A. Mathé, Marinella Temprosa, Steven C. Moore, Bo Chawes, A. Heather Eliassen, Andrea Gsur, Marc J. Gunter, Sei Harada, Claudia Langenberg, Matej Orešič, Wei Perng, Wei Jie Seow, Oana A. Zeleznik
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.19490

Using molecular functional networks to manifest connections between obesity and obesity-related diseases
Cited by: 6
Author(s): Jialiang Yang, Jing Qiu, Kejing Wang, Lijuan Zhu, Jingjing Fan, De-Yin Zheng, Xiaodi Meng, Jiasheng Yang, Lihong Peng, Yu Fu, Dahan Zhang, Shouneng Peng, Haiyun Huang, Yi Zhang
Software Mentions: 1
Published: over 7 years ago

10.3390/metabo9080157

Bronchoalveolar Lavage Fluid from COPD Patients Reveals More Compounds Associated with Disease than Matched Plasma
Cited by: 27
Author(s): Eitan Halper-Stromberg, Lucas A. Gillenwater, Charmion Cruickshank‐Quinn, Wanda K. O’Neal, Nichole Reisdorph, Irina Petrache, Yonghua Zhuang, Wassim W. Labaki, Jeffrey L. Curtis, James M. Wells, Stephen I. Rennard, Katherine Pratte, Prescott G. Woodruff, Kathleen A. Stringer, Katerina Kechris, Russell P. Bowler
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-019-0584-5

Gene network analysis reveals a role for striatal glutamatergic receptors in dysregulated risk-assessment behavior of autism mouse models
Cited by: 9
Author(s): Oded Oron, Dmitriy Getselter, Shahar Shohat, Eli Reuveni, Iva Lukić, Sagiv Shifman, Evan Elliott
Software Mentions: 1
Published: about 5 years ago

10.3390/metabo11030161

Metabolomic Profiling Reveals Sex Specific Associations with Chronic Obstructive Pulmonary Disease and Emphysema
Cited by: 14
Author(s): Lucas A. Gillenwater, Katerina Kechris, Katherine Pratte, Nichole Reisdorph, Irina Petrache, Wassim W. Labaki, Wanda K. O’Neal, Jerry A. Krishnan, Victor E. Ortega, Dawn L. DeMeo, Russell P. Bowler
Software Mentions: 1
Published: over 3 years ago

10.4317/medoral.24385

Whole exome sequencing and system biology analysis support the "two-hit" mechanism in the onset of Ameloblastoma
Cited by: 4
Author(s): Yueqi Shi, Mengyu Li, Yinglan Yu, Yuqiong Zhou, Shaoyi Wang
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.22181

Identification of differentially expressed genes, lncRNAs and miRNAs which are associated with tumor malignant phenotypes in hepatoblastoma patients
Cited by: 16
Author(s): Sida Liu, Fujing Xie, Xiaohong Xiang, Sinan Liu, Shunbin Dong, Kai Qu, Ting Lin
Software Mentions: 1
Published: about 7 years ago

10.1038/s41398-020-00907-1

Adult mouse hippocampal transcriptome changes associated with long-term behavioral and metabolic effects of gestational air pollution toxicity
Cited by: 20
Author(s): Amin Haghani, Richard G. Johnson, Nick Woodward, Jason I. Feinberg, Kristy Lewis, Christine Ladd‐Acosta, Nikoo Safi, Andrew E. Jaffe, Constantinos Sioutas, Hooman Allayee, Daniel B. Campbell, Heather E. Volk, Caleb E. Finch, Todd E. Morgan
Software Mentions: 1
Published: over 4 years ago

10.1038/s41398-020-01007-w

Gene co-expression networks in peripheral blood capture dimensional measures of emotional and behavioral problems from the Child Behavior Checklist (CBCL)
Cited by: 2
Author(s): Jonathan Hess, Nicholas Nguyen, Jesse Suben, Ryan M Meath, Avery B. Albert, Sarah Van Orman, Kristin M. Anders, Patricia Forken, Cheryl Roe, Thomas G. Schulze, Stephen V. Faraone, Stephen J. Glatt
Software Mentions: 1
Published: about 4 years ago

10.1097/MD.0000000000009738

Identification of gene expression models for laryngeal squamous cell carcinoma using co-expression network analysis
Cited by: 9
Author(s): Chao Yang, Shufang Wang, Xiangli Yang, Lin Wang, Lin Niu, Jixiang Liu
Software Mentions: 1
Published: almost 7 years ago

10.1007/s00335-016-9656-5

Uncovering the liver’s role in immunity through RNA co-expression networks
Cited by: 11
Author(s): Kylie K. Harrall, Katerina Kechris, Boris Tabakoff, Paula L. Hoffman, Lisa M. Hines, Hidekazu Tsukamoto, Michal Pravenec, Morton P. Printz, Laura Saba
Software Mentions: 1
Published: over 8 years ago

10.26508/lsa.202101091

Serum proteomics reveals disorder of lipoprotein metabolism in sepsis
Cited by: 2
Author(s): Xi Liang, Tianzhou Wu, Qi Chen, Jing Jiang, Yongpo Jiang, Yiwen Ruan, Huaping Zhang, Sheng Zhang, Zhang Chao, Peng Chen, Yuhang Lv, Jiaojiao Xin, Dongyan Shi, Xin Chen, Li Jun, Yinghe Xu
Software Mentions: 1
Published: about 3 years ago

10.1155/2021/6651009

Candidate Genes Identified in Systemic Sclerosis-Related Pulmonary Arterial Hypertension Were Associated with Immunity, Inflammation, and Cytokines
Cited by: 5
Author(s): Zhixiao Xu, Jiaxing Ruan, Lingyun Pan, Chengshui Chen
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/3946913

Metabolic Modulation and Potential Biomarkers of the Prognosis Identification for Severe Aortic Stenosis after TAVR by a Metabolomics Study
Cited by: 6
Author(s): Yanbiao Liao, Chang Liu, Tingting Xiong, Mingyue Zhao, Wen Zheng, Yuan Feng, Yijian Li, Yuanweixiang Ou, Zhengang Zhang, Yong Peng, Jiafu Wei, Qiao Li, Wei Meng, Xiaojing Liu, Mao Chen
Software Mentions: 1
Published: about 4 years ago

10.1186/s40170-016-0143-y

Integration of omics: more than the sum of its parts
Cited by: 84
Author(s): Joerg M. Buescher, Edward M. Driggers
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41398-021-01536-y

Genome-wide DNA methylation and gene expression analyses in monozygotic twins identify potential biomarkers of depression
Cited by: 28
Author(s): Weijing Wang, Weilong Li, Yili Wu, Xiaocao Tian, Haiping Duan, Shuxia Li, Qihua Tan, Dongfeng Zhang
Software Mentions: 1
Published: over 3 years ago

10.1002/cam4.3240

Development and validation of an immune‐related prognostic signature in lung adenocarcinoma
Cited by: 69
Author(s): Sijin Sun, Wei Guo, Zhen Wang, Xin Wang, Guochao Zhang, Hao Zhang, Renda Li, Yibo Gao, Bin Qiu, Fengwei Tan, Yushun Gao, Qi Xue, Shugeng Gao, Jie He
Software Mentions: 1
Published: over 4 years ago

10.1007/s12975-020-00869-y

Molecular Correlates of Hemorrhage and Edema Volumes Following Human Intracerebral Hemorrhage Implicate Inflammation, Autophagy, mRNA Splicing, and T Cell Receptor Signaling
Cited by: 21
Author(s): Marc Durocher, Bodie Knepp, Alan Yee, Glen C. Jickling, Fernando Rodríguez Rodríguez, Kwan Ng, Xinhua Zhan, Farah Hamade, Eva Ferino, Hajar Amini, Paulina Carmona-Mora, Heather Hull, Bradley P. Ander, Frank R. Sharp, Boryana Stamova
Software Mentions: 1
Published: about 4 years ago

10.1002/cam4.3369

Microarray profiling of differentially expressed lncRNAs and mRNAs in lung adenocarcinomas and bioinformatics analysis
Cited by: 12
Author(s): Fei He, Liping Huang, Qiuping Xu, Weimin Xiong, Shuang Liu, Huimin Yang, Wenzhou Lu, Rendong Xiao, Zhijian Hu, Lin Cai
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.102971

Prognostic values of immune scores and immune microenvironment-related genes for hepatocellular carcinoma
Cited by: 22
Author(s): Penglei Ge, Shifang Li, Weiwei Wang, Chunbo Li, Yu-Bin Fu, Zhengkai Feng, Lin Li, Gong Zhang, Zhiqiang Gao, Xiaowei Dang, Yang Wu
Software Mentions: 1
Published: over 4 years ago

10.1186/s12935-021-01880-5

Silencing SHMT2 inhibits the progression of tongue squamous cell carcinoma through cell cycle regulation
Cited by: 12
Author(s): Yan Liao, Fang Wang, Yadong Zhang, Hao Cai, Song Fan, Jinsong Hou
Software Mentions: 1
Published: over 3 years ago

10.1186/s12935-021-02052-1

GNRH1 and LTB4R might be novel immune-related prognostic biomarkers in clear cell renal cell carcinoma (ccRCC)
Cited by: 10
Author(s): Hua-Hui Wu, Xin Yan, Chen Zhao, Guo-Wei Du, Xiaojie Bai, Kurerban Tuoheti, Tong-Zu Liu
Software Mentions: 1
Published: over 3 years ago

10.1186/s12935-021-02047-y

LRRK2 is a candidate prognostic biomarker for clear cell renal cell carcinoma
Cited by: 3
Author(s): Chunxiu Yang, Jingjing Pang, Jian Xu, He Pan, Yueying Li, Huainian Zhang, Huan Liu, Shu‐Yuan Xiao
Software Mentions: 1
Published: over 3 years ago

10.1186/s12935-017-0458-y

Integrated genomic characterization of cancer genes in glioma
Cited by: 22
Author(s): Aijun Liang, Bin Zhou, Wei Sun
Software Mentions: 1
Published: about 7 years ago

10.1186/s13058-018-1043-6

Foxf2 plays a dual role during transforming growth factor beta-induced epithelial to mesenchymal transition by promoting apoptosis yet enabling cell junction dissolution and migration
Cited by: 19
Author(s): Nathalie Meyer-Schaller, Chantal Heck, Stefanie Tiede, M. Deniz Yilmaz, Gerhard Christofori
Software Mentions: 1
Published: about 6 years ago

10.1128/mSystems.00036-16

RNA Sequencing-Based Genome Reannotation of the Dermatophyte <i>Arthroderma benhamiae</i> and Characterization of Its Secretome and Whole Gene Expression Profile during Infection
Cited by: 30
Author(s): Van Du T. Tran, Niccolò De Coi, Marc Feuermann, Emanuel Schmid‐Siegert, Elena-Tatiana Băguţ, Bernard Mignon, Patrice Waridel, Corinne Peter, Sylvain Pradervand, Marco Pagni, Michel Monod
Software Mentions: 1
Published: about 8 years ago

10.18632/aging.103979

LINC01235-TWIST2 feedback loop facilitates epithelial–mesenchymal transition in gastric cancer by inhibiting THBS2
Cited by: 16
Author(s): Yongjun Tan, Xing Yao, Ban-Lai Ran, Chao Zhang, Siwei Pan, Wei An, Qingchuan Chen, Hui Xu
Software Mentions: 1
Published: about 4 years ago

10.1186/s12872-016-0217-3

Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease
Cited by: 66
Author(s): Jing Liu, Ling Jing, Xilin Tu
Software Mentions: 1
Published: over 8 years ago

10.1007/s00429-016-1338-2

Brain transcriptome atlases: a computational perspective
Cited by: 17
Author(s): Ahmed Mahfouz, Sjoerd M. H. Huisman, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders
Software Mentions: 1
Published: almost 8 years ago

10.1002/brb3.2309

Coexpression of the discoidin domain receptor 1 gene with oligodendrocyte‐related and schizophrenia risk genes in the developing and adult human brain
Cited by: 6
Author(s): Gerard Muntané, Marc Chillida, Selena Aranda, Arcadi Navarro, Elisabet Vilella
Software Mentions: 1
Published: over 3 years ago

10.1093/brain/awaa270

Differences in network controllability and regional gene expression underlie hallucinations in Parkinson’s disease
Cited by: 27
Author(s): Angeliki Zarkali, Peter McColgan, Mina Ryten, Regina H Reynolds, Louise‐Ann Leyland, Andrew J. Lees, Geraint Rees, Rimona S Weil
Software Mentions: 1
Published: about 4 years ago

10.1093/brain/awv127

First effects of rising amyloid-β in transgenic mouse brain: synaptic transmission and gene expression
Cited by: 64
Author(s): Damian M. Cummings, Wenfei Liu, Erik Portelius, Bayram Sevinç, Marina V. Yasvoina, Hinze Ho, Hélène Smits, Shabinah S. Ali, Rivka Steinberg, Chrysia-Maria Pegasiou, Owain T. James, Mar Matarı́n, Jill C. Richardson, Henrik Zetterberg, Kaj Blennow, John Hardy, Dervis A. Salih, Frances A. Edwards
Software Mentions: 1
Published: over 9 years ago

10.1186/s40529-017-0176-8

Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis
Cited by: 11
Author(s): Po-Chih Shen, Ai-Ling Hour, Liyu Liu
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.00499-20

Dietary Intervention Reverses Fatty Liver and Altered Gut Microbiota during Early-Life Undernutrition
Cited by: 3
Author(s): Kylynda C. Bauer, Kelsey E. Huus, Eric Brown, Tahereh Bozorgmehr, Charisse Petersen, Mihai Cirstea, Sarah E. Woodward, John J. McCoy, Jeong Ki Hun, Reinald Pamplona, Victòria Ayala, B. Brett Finlay
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.102653

Network analysis of human muscle adaptation to aging and contraction
Cited by: 14
Author(s): Craig R. G. Willis, Ryan M. Ames, Colleen S. Deane, Bethan E. Phillips, Catherine Boereboom, Haitham Abdulla, Syed S I Bukhari, Jonathan N. Lund, John P. Williams, Daniel J. Wilkinson, Kenneth Smith, Fawzi Kadi, Nathaniel J. Szewczyk, Philip J. Atherton, Timothy Etheridge
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40246-021-00350-3

Identification of subgroups along the glycolysis-cholesterol synthesis axis and the development of an associated prognostic risk model
Cited by: 4
Author(s): Enchong Zhang, Yijing Chen, Shurui Bao, Xueying Hou, Jing Hu, Oscar Yong Nan Mu, Yi Song, Liping Shan
Software Mentions: 1
Published: over 3 years ago

10.1186/s12872-021-01973-z

Comparative transcriptome analysis of transcripts of uncertain coding potential in septic myocardial depression
Cited by: 1
Author(s): Tie-Ning Zhang, Ri Wen, Ni Yang, Chunfeng Liu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41408-021-00409-3

XPO1 inhibitors represent a novel therapeutic option in Adult T-cell Leukemia, triggering p53-mediated caspase-dependent apoptosis
Cited by: 3
Author(s): Eline Boons, Tatiane C Nogueira, Tim Dierckx, Soraya Maria Menezes, Maarten Jacquemyn, Sharon Tamir, Yosef Landesman, Lourdes Farré, Achiléa Lisboa Bittencourt, Keisuke Kataoka, Seishi Ogawa, Robert Snoeck, Gracíela Andrei, Johan Van Weyenbergh, Dirk Daelemans
Software Mentions: 1
Published: almost 4 years ago

10.1186/s40246-016-0071-5

Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia
Cited by: 33
Author(s): Garima Kushwaha, Mikhail G. Dozmorov, Jonathan D. Wren, Jing Qiu, Huidong Shi, Dong Xu
Software Mentions: 1
Published: over 8 years ago

10.1093/hmg/ddv166

Spatiotemporal dynamics of the postnatal developing primate brain transcriptome
Cited by: 32
Author(s): Trygve E. Bakken, Jeremy A. Miller, Rui Luo, Amy Bernard, Jeffrey Bennett, Chang Kyu Lee, Darren Bertagnolli, Neelroop N. Parikshak, Kimberly A. Smith, Susan M. Sunkin, David G. Amaral, Daniel H. Geschwind, Ed Lein
Software Mentions: 1
Published: over 9 years ago

10.18632/aging.102422

Selected by gene co-expression network and molecular docking analyses, ENMD-2076 is highly effective in glioblastoma-bearing rats
Cited by: 16
Author(s): Sheng Zhong, Yang Bai, Bo Wu, Junliang Ge, Shanshan Jiang, Weihang Li, Xinhui Wang, Junan Ren, Haidong Xu, Yong Chen
Software Mentions: 1
Published: about 5 years ago

10.1186/s13068-019-1440-9

Omics-based analyses revealed metabolic responses of Clostridium acetobutylicum to lignocellulose-derived inhibitors furfural, formic acid and phenol stress for butanol fermentation
Cited by: 38
Author(s): Bin Liu, Jing Zhang, Jian Yuan, Xiaolong Jiang, Lingyan Jiang, Guang Zhao, Di Huang
Software Mentions: 1
Published: over 5 years ago

10.1093/hmg/ddaa132

Serum biomarkers associated with baseline clinical severity in young steroid-naïve Duchenne muscular dystrophy boys
Cited by: 14
Author(s): Utkarsh J. Dang, Michael Ziemba, Paula R. Clemens, Yetrib Hathout, Laurie S. Conklin, Cinrg Vamorolone, Investigators, Eric P. Hoffman
Software Mentions: 1
Published: over 4 years ago

10.1186/s40478-020-01109-y

Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain
Cited by: 16
Author(s): Joanna J. Bury, Annabelle Chambers, Paul R. Heath, Paul G. Ince, Pamela J. Shaw, Fiona E. Matthews, Carol Brayne, Julie E. Simpson, Stephen B. Wharton
Software Mentions: 1
Published: almost 4 years ago

10.1161/HYPERTENSIONAHA.118.12409

<i>Camk2n1</i> Is a Negative Regulator of Blood Pressure, Left Ventricular Mass, Insulin Sensitivity, and Promotes Adiposity
Cited by: 13
Author(s): Neza Alfazema, Marjorie Barrier, Sophie Marion de Procé, Robert Menzies, Roderick Nicholas Carter, Kevin Stewart, Ana García Díaz, Ben Moyon, Zoë Webster, Christopher Bellamy, Mark J. Arends, Roland H Stimson, Nicholas M. Morton, Timothy J. Aitman, Philip Coan
Software Mentions: 1
Published: about 5 years ago

10.1186/s13068-018-1291-9

De novo transcriptome assembly of the bamboo snout beetle Cyrtotrachelus buqueti reveals ability to degrade lignocellulose of bamboo feedstock
Cited by: 20
Author(s): Chaobing Luo, Yuanqiu Li, Hong Liao, Yaolong Yang
Software Mentions: 1
Published: about 6 years ago

10.1042/BSR20202649

Screening of key genes related to the prognosis of mouse sepsis
Cited by: 9
Author(s): Muhu Chen, Xue Chen, Yingchun Hu, Xianfu Cai
Software Mentions: 1
Published: about 4 years ago

10.1042/BSR20204219

A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
Cited by: 6
Author(s): Huan Ding, Huan Hu, Fei Tian, Huaping Liang
Software Mentions: 1
Published: over 3 years ago

10.1042/BSR20203458

A panel of two miRNAs correlated to systolic blood pressure is a good diagnostic indicator for stroke
Cited by: 3
Author(s): Yujun Qi, Mingfeng Yuan, Qiong Yi, Yan Wang, Lei Xu, Changshui Xu, Min Lü
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41396-018-0342-3

Dual RNA-seq reveals large-scale non-conserved genotype × genotype-specific genetic reprograming and molecular crosstalk in the mycorrhizal symbiosis
Cited by: 43
Author(s): Ivan D. Mateus, Frédéric G. Masclaux, Consolée Aletti, Edward C. Rojas, Romain Savary, Cindy Dupuis, Ian R. Sanders
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41396-019-0472-2

Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection
Cited by: 54
Author(s): Bethany Kolody, John P. McCrow, Lisa Zeigler Allen, Frank O. Aylward, Kristina M. Fontanez, Ahmed Moustafa, Mohammad Moniruzzaman, Francisco P. Chávez, Christopher A. Scholin, Eric E. Allen, Alexandra Z. Worden, Edward F. DeLong, Andrew E. Allen
Software Mentions: 1
Published: over 5 years ago

10.1042/BSR20194067

Co-expression network-based identification of biomarkers correlated with the lymph node metastasis of patients with head and neck squamous cell carcinoma
Cited by: 6
Author(s): Yu Jin, Xing Qin
Software Mentions: 1
Published: almost 5 years ago

10.1042/BSR20200124

Potential targets and molecular mechanism of miR-331-3p in hepatocellular carcinoma identified by weighted gene coexpression network analysis
Cited by: 6
Author(s): Qingjia Chi, Xinge Geng, Kang Xu, Chunli Wang, Han Zhao
Software Mentions: 1
Published: over 4 years ago

10.1042/BSR20203263

Exploration and validation of a novel prognostic signature based on comprehensive bioinformatics analysis in hepatocellular carcinoma
Cited by: 4
Author(s): Xiaofei Wang, Jie Qiao, Rongqi Wang
Software Mentions: 1
Published: about 4 years ago

10.7150/ijbs.51309

CDH1 is Identified as A Therapeutic Target for Skin Regeneration after Mechanical Loading
Cited by: 9
Author(s): Xiaolu Huang, Xiao Liang, Yiwen Zhou, Haizhou Li, Hengyu Du, Yinjun Suo, Wenhui Liu, Rui Jin, Bangda Chai, Ran Duan, Qingfeng Li
Software Mentions: 1
Published: almost 4 years ago

10.7150/ijbs.59559

Upregulation of ATP Binding Cassette Subfamily C Member 5 facilitates Prostate Cancer progression and Enzalutamide resistance via the CDK1-mediated AR Ser81 Phosphorylation Pathway
Cited by: 7
Author(s): Guangjie Ji, Shiming He, Cong Huang, Yanqing Gong, Xuesong Li, Liqun Zhou
Software Mentions: 1
Published: almost 4 years ago

10.1042/BSR20191511

Weighted gene co-expression network analysis reveals specific modules and hub genes related to neuropathic pain in dorsal root ganglions
Cited by: 8
Author(s): Nan Cheng, Zheng Zhang, Yue Guo, Zhuolin Qiu, Jikun Du, Ziqing Hei, Xiang Li
Software Mentions: 1
Published: about 5 years ago

10.1186/s13046-018-1002-1

Classification of triple-negative breast cancers based on Immunogenomic profiling
Cited by: 274
Author(s): Hanlin Yin, Zhongshan Jiang, Chen Cai, Xiaosheng Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12872-021-02211-2

Identification of key miRNAs and mRNAs related to coronary artery disease by meta-analysis
Cited by: 3
Author(s): Long Liu, Jingze Zhang, Mei Yi Wu, Haiming Xu
Software Mentions: 1
Published: about 3 years ago

10.3390/biom10040549

Biochemical and Comparative Transcriptome Analyses Reveal Key Genes Involved in Major Metabolic Regulation Related to Colored Leaf Formation in Osmanthus fragrans ‘Yinbi Shuanghui’ during Development
Cited by: 13
Author(s): Xuan Chen, Xia Yang, Jun Xie, Wenjie Ding, Yuli Li, Yuanzheng Yue
Software Mentions: 1
Published: over 4 years ago

10.1186/s13046-020-01803-8

Hepatitis B virus P protein initiates glycolytic bypass in HBV-related hepatocellular carcinoma via a FOXO3/miRNA-30b-5p/MINPP1 axis
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Author(s): Wenbiao Chen, Jingjing Jiang, Lan Gong, Zheyue Shu, Da‐Xiong Xiang, Xujun Zhang, Kefan Bi, Hongyan Diao
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13046-020-01782-w

Alcoholic fatty liver disease inhibited the co-expression of Fmo5 and PPARα to activate the NF-κB signaling pathway, thereby reducing liver injury via inducing gut microbiota disturbance
Cited by: 27
Author(s): Ling Kong, Jing Chen, Xiao li Ji, Qian Qin, Hui Yang, Dan Liú, De liang Li, Mei ling Sun
Software Mentions: 1
Published: almost 4 years ago

10.3390/biom8030070

Functional Annotation of Caenorhabditis elegans Genes by Analysis of Gene Co-Expression Networks
Cited by: 4
Author(s): Wei Liu, Ling Li, Yiruo He, Sen Cai, Wenjie Zhao, Hao Zheng, Yuexian Zhong, Shaobo Wang, Yang Zou, Zhenhua Xu, Yu Zhang, Wei Tu
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/3876834

Identification of Genes Associated with the Metastasis of Pheochromocytoma/Paraganglioma Based on Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Qingde Su, Qinpei Ding, Zunni Zhang, Zheng Yang, Yuling Qiu, Xiaohong Li, Wuning Mo
Software Mentions: 1
Published: almost 5 years ago

10.1155/2020/4169691

Identifying Tumorigenesis and Prognosis-Related Genes of Lung Adenocarcinoma: Based on Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Ming Yi, Tianye Li, Shuang Qin, Shengnan Yu, Qian Chu, An‐Ping Li, Kongming Wu
Software Mentions: 1
Published: almost 5 years ago

10.3390/jof6030108

Modeling Approaches Reveal New Regulatory Networks in Aspergillus fumigatus Metabolism
Cited by: 2
Author(s): Enzo Acerbi, Marcela Hortová-Kohoutková, Tsokyi Choera, Nancy P. Keller, Jan Frič, Fabio Stella, Luigina Romani, Teresa Zelante
Software Mentions: 1
Published: over 4 years ago

10.3390/jof7040270

Identifying Conserved Generic Aspergillus spp. Co-Expressed Gene Modules Associated with Germination Using Cross-Platform and Cross-Species Transcriptomics
Cited by: 4
Author(s): Tim J. H. Baltussen, Jordy P. M. Coolen, Paul E. Verweij, Jan Dijksterhuis, Willem J. G. Melchers
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/4921387

Investigation of Potential Genetic Biomarkers and Molecular Mechanism of Ulcerative Colitis Utilizing Bioinformatics Analysis
Cited by: 19
Author(s): Jiaqi Zhang, Xue Wang, Lin Xu, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 4 years ago

10.1155/2020/9827349

The Effect of Inflammation on the Formation of Thyroid Nodules
Cited by: 4
Author(s): Zexin Li, Yiteng Huang, Xiang Cheng, Chiju Wei, Peixuan Yang, Weilai Xu
Software Mentions: 1
Published: over 4 years ago

10.1155/2021/9957569

Application of Weighted Gene Coexpression Network Analysis to Identify Key Modules and Hub Genes in Systemic Juvenile Idiopathic Arthritis
Cited by: 5
Author(s): Mi Zhou, Ruru Guo, Yong Fei Wang, Wanling Yang, Rongxiu Li, Liangjing Lu
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.23219

Co-expression analysis revealed PTCH1-3'UTR promoted cell migration and invasion by activating miR-101-3p/SLC39A6 axis in non-small cell lung cancer: implicating the novel function of PTCH1
Cited by: 21
Author(s): Xuechao Wan, Zhe Kong, Kaili Chu, Chuanyou Yi, Jian Hu, Rui Qin, Chunxia Zhao, Fangqiu Fu, Hai Wu, Yao Li, Yan Huang
Software Mentions: 1
Published: almost 7 years ago

10.1155/2015/316735

Gene Coexpression and Evolutionary Conservation Analysis of the Human Preimplantation Embryos
Cited by: 3
Author(s): Tiancheng Liu, Yuling Lin, Guohui Ding, Zhen Wang, Lei Liu, Hong Li, Yixue Li
Software Mentions: 1
Published: almost 10 years ago

10.1155/2020/5478574

The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
Cited by: 18
Author(s): Hao Ding, Xiao-Xing Xiong, Guanlan Fan, Yuexiong Yi, Yurou Chen, Jingtao Wang, Wei Zhang
Software Mentions: 1
Published: over 4 years ago

10.1155/2020/6782046

Gene Coexpression Network and Module Analysis across 52 Human Tissues
Cited by: 1
Author(s): Binsheng He, Junlin Xu, Yingxiang Tian, Bo Liao, Jidong Lang, Huixin Lin, Xiaofei Mo, Qingqing Lu, Geng Tian, Pingping Bing
Software Mentions: 1
Published: over 4 years ago

10.1155/2018/2914280

A Risk Stratification Model for Lung Cancer Based on Gene Coexpression Network and Deep Learning
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Author(s): Hongyoon Choi, Kwon Joong Na
Software Mentions: 1
Published: almost 7 years ago

10.1155/2019/9637479

Xiao-Qing-Long Tang Prevents Cardiomyocyte Hypertrophy, Fibrosis, and the Development of Heart Failure with Preserved Ejection Faction in Rats by Modulating the Composition of the Gut Microbiota
Cited by: 14
Author(s): Guocheng Zhou, Yue-Hua Jiang, Daifu Ma, Yongcheng Wang, Jinlong Yang, Jiye Chen, Chen-Yu Chi, Xiaowei Han, Zhaoyu Li, Xiao Li
Software Mentions: 1
Published: over 5 years ago

10.7150/ijms.61771

PD-L1 correlated gene expression profiles and tumor infiltrating lymphocytes in pancreatic cancer
Cited by: 2
Author(s): Jiajin Li, Lu Yin, Yumei Chen, Shuxian An, Yi Xiong, Gang Huang, Jianjun Li
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/4264291

Coexpression Network Analysis Identifies a Novel Nine-RNA Signature to Improve Prognostic Prediction for Prostate Cancer Patients
Cited by: 7
Author(s): Jiarong Cai, Zheng Chen, Xuelian Chen, He Huang, Xiao Lin, Benchun Miao
Software Mentions: 1
Published: about 4 years ago

10.1155/2021/1093702

Microarray Data Mining and Preliminary Bioinformatics Analysis of Hepatitis D Virus-Associated Hepatocellular Carcinoma
Cited by: 6
Author(s): Zhe Yu, Xuemei Ma, Wei Zhang, Xiujuan Chang, Lihui An, Ming Niu, Yan Chen, Chao Sun, Yongping Yang
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12885-021-08030-0

An energy metabolism-based eight-gene signature correlates with the clinical outcome of esophagus carcinoma
Cited by: 8
Author(s): Wei Zheng, Chaoying Chen, Jianghao Yu, Chengfeng Jin, Tie-Mei Han
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-018-4176-1

Integrated genomic analysis identifies clinically relevant subtypes of renal clear cell carcinoma
Cited by: 27
Author(s): Peng Wu, Jiali Liu, Shimei Pei, Changpeng Wu, Kai Yang, Shupeng Wang, Song Wu
Software Mentions: 1
Published: over 6 years ago

10.22038/IJBMS.2018.29498.7123

Gene co-expression network analysis identifies BRCC3 as a key regulator in osteogenic differentiation of osteoblasts through a β-catenin signaling dependent pathway.
Cited by: 0
Author(s): Lixiong Cai, Zhiqian Huo, Huiling Yang, HE Feng-chun, Zheng-lin Cao, Feng Wu, Lianjun Liu, Bing‐Yin Sun
Software Mentions: 1
Published: almost 6 years ago

10.1155/2016/3962761

Differentially Coexpressed Disease Gene Identification Based on Gene Coexpression Network
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Author(s): Xue Jiang, Han Zhang, Xiongwen Quan
Software Mentions: 1
Published: almost 9 years ago

10.1155/2021/6664791

Coexpressed Genes That Promote the Infiltration of M2 Macrophages in Melanoma Can Evaluate the Prognosis and Immunotherapy Outcome
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Author(s): Kexin Yan, Yutao Wang, Yuxiu Lu, Zhangyong Yan
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/8872577

Identification of a β-Arrestin 2 Mutation Related to Autism by Whole-Exome Sequencing
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Author(s): Yunfei Tang, Yamei Liu, Lei Tong, Shini Feng, Dongshu Du, Fuxue Chen
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Published: about 4 years ago

10.1186/s12938-019-0625-6

Potential biomarkers of acute myocardial infarction based on weighted gene co-expression network analysis
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Author(s): Zhihua Liu, Chenguang Ma, Junhua Gu, Ming Yu
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.26554

Integrative system genetic analysis reveals mRNA-lncRNA network associated with mouse spontaneous lung cancer susceptibility
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Author(s): Yanzhao Zhou, Ming You
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/5518908

Screening Prognosis-Related lncRNAs Based on WGCNA to Establish a New Risk Score for Predicting Prognosis in Patients with Hepatocellular Carcinoma
Cited by: 4
Author(s): Xueliang Zhou, Mengmeng Dou, Zaoqu Liu, Dechao Jiao, Zhaonan Li, Jianjian Chen, Jing Li, Yuan Yao, Lifeng Li, Yahua Li, Xinwei Han
Software Mentions: 1
Published: over 3 years ago