cran: WGCNA | Projects | Ecosyste.ms: Papers

10.18632/aging.202596

Integrative analysis of exosomal microRNA-149-5p in lung adenocarcinoma
Cited by: 7
Author(s): Wen Tian, Yang He, Baosen Zhou
Software Mentions: 1
Published: over 5 years ago

Sorting Out Sorting Nexins Functions in the Nervous System in Health and Disease
Cited by: 13
Author(s): Neide Vieira, Teresa Rito, Margarida Correia-Neves, Nuno Sousa
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-019-0486-6

Dysregulation of a specific immune-related network of genes biologically defines a subset of schizophrenia
Cited by: 21
Author(s): Svenja V. Trossbach, Laura Hecher, David Schafflick, René Deenen, Ovidiu Popa, Tobias Lautwein, Sarah K. Tschirner, Karl Köhrer, Karin Fehsel, Irina Papazova, Berend Malchow, Alkomiet Hasan, Georg Winterer, Aurore Schmitt, Gerd Meyer zu Hörste, Peter Falkai, Carsten Korth
Software Mentions: 1
Published: over 7 years ago

10.1186/s41065-019-0083-y

Bladder cancer stage-associated hub genes revealed by WGCNA co-expression network analysis
Cited by: 63
Author(s): Yu Di, Dongshan Chen, Wenxia Yu, Lei Yan
Software Mentions: 1
Published: almost 8 years ago

10.1186/s10020-019-0135-9

Identification of biomarkers in common chronic lung diseases by co-expression networks and drug-target interactions analysis
Cited by: 29
Author(s): Mazaher Maghsoudloo, Sadegh Azimzadeh Jamalkandi, Ali Najafi, Ali Masoudi‐Nejad
Software Mentions: 1
Published: almost 7 years ago

10.1002/mgg3.427

Identification and functional annotation of metabolism-associated lncRNAs and their related protein-coding genes in gastric cancer
Cited by: 14
Author(s): Xiaoyan Mo, Tianwen Li, Youhua Xie, Linwen Zhu, Bingxiu Xiao, Qi Liao, Junming Guo
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-020-07250-1

Deficiencies in the formation and regulation of anther cuticle and tryphine contribute to male sterility in cotton PGMS line
Cited by: 5
Author(s): Meng Zhang, Ji Liu, Qiang Ma, Yuan Qin, Hantao Wang, Pengyun Chen, Liang Ma, Xiaokang Fu, Longfu Zhu, Hengling Wei, Shuang Yu
Software Mentions: 1
Published: almost 6 years ago

10.1002/mgg3.1478

Identification of a missense <i>ARSA</i> mutation in metachromatic leukodystrophy and its potential pathogenic mechanism
Cited by: 2
Author(s): Liyuan Guo, Bo Jin, Yidan Zhang, Jing Wang
Software Mentions: 1
Published: about 6 years ago

10.1111/jcmm.16703

Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
Cited by: 12
Author(s): Jingxia Lin, Xuefei Li, Fangfei Zhang, Lei Zhu, Yongfeng Chen
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.202432

Identification of hub genes and key pathways in the emphysema phenotype of COPD
Cited by: 6
Author(s): Qiunan Zuo, Youyu Wang, Deqing Yang, Shujin Guo, Xiaohui Li, Jiajia Dong, Chun Wan, Yongchun Shen, Fuqiang Wen
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules22060889

Comprehensive Characterization for Ginsenosides Biosynthesis in Ginseng Root by Integration Analysis of Chemical and Transcriptome
Cited by: 21
Author(s): Jingjing Zhang, He Su, Lei Zhang, Baosheng Liao, Shaobo Xiao, Lixin Dong, Zhigang Hu, Ping Wang, Xiwen Li, Zhixing Huang, Zhiming Gao, Lianjuan Zhang, Liang Shen, Ruiyang Cheng, Jiang Xu, Shilin Chen
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules25010190

Metabolome and Transcriptome Analysis Reveals Putative Genes Involved in Anthocyanin Accumulation and Coloration in White and Pink Tea (Camellia sinensis) Flower
Cited by: 51
Author(s): Caibi Zhou, Xin Mei, Dylan O’Neill Rothenberg, Zuoren Yang, Wenting Zhang, Shihua Wan, Haijun Yang, Lingyun Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-019-5424-8

Transcriptional regulatory networks controlling taste and aroma quality of apricot (Prunus armeniaca L.) fruit during ripening
Cited by: 36
Author(s): Qiuyun Zhang, Chao Feng, Wenhui Li, Zehui Qu, Ming Zeng, Wanpeng Xi
Software Mentions: 1
Published: almost 8 years ago

10.1002/jcla.23680

Constructing a 10‐core genes panel for diagnosis of pediatric sepsis
Cited by: 4
Author(s): Xiaojie Zhou, Yumin Wang, Jie Chen, Jingye Pan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41398-019-0584-5

Gene network analysis reveals a role for striatal glutamatergic receptors in dysregulated risk-assessment behavior of autism mouse models
Cited by: 9
Author(s): Oded Oron, Dmitriy Getselter, Shahar Shohat, Eli Reuveni, Iva Lukić, Sagiv Shifman, Evan Elliott
Software Mentions: 1
Published: about 7 years ago

10.3390/jcm8101719

Reformulating Pro-Oxidant Microglia in Neurodegeneration
Cited by: 45
Author(s): Juan García-Revilla, Isabel María Alonso-Bellido, Miguel Ángel Burguillos, Antonio J. Herrera, Ana M. Espinosa-Oliva, Rocío Ruiz, Luis Cruz-Hernández, Irene García-Domínguez, María Angustias Roca-Ceballos, Marti Santiago, José A. Rodríguez‐Gómez, Manuel Sarmiento Soto, Rocío M. de Pablos, José L. Venero
Software Mentions: 1
Published: about 7 years ago

10.1074/mcp.RA118.001021

Characterization of Proteome Variation During Modern Maize Breeding*
Cited by: 34
Author(s): Luguang Jiang, Bo Li, Shengxue Liu, Hongwei Wang, Cuiping Li, Shuhui Song, Mary Beatty, Gina Zastrow-Hayes, Xiaohong Yang, Feng Qin, Yan He
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-019-5773-3

A deficiency in SUMOylation activity disrupts multiple pathways leading to neural tube and heart defects in Xenopus embryos
Cited by: 11
Author(s): Michelle M. Bertke, Kyle M. Dubiak, Laura Cronin, Erliang Zeng, Paul W. Huber
Software Mentions: 1
Published: over 7 years ago

10.1186/s12943-021-01310-0

Identification of tumor antigens and immune subtypes of pancreatic adenocarcinoma for mRNA vaccine development
Cited by: 84
Author(s): Xing Huang, Gang Zhang, Tianyu Tang, Tingbo Liang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3201-5

Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass
Cited by: 14
Author(s): Taylor P. Frazier, Nathan A. Palmer, Fuliang Xie, Christian M. Tobias, Teresa Donze-Reiner, Aureliano Bombarely, Kevin L. Childs, Shengqiang Shu, Jerry Jenkins, Jeremy Schmutz, Baohong Zhang, Gautam Sarath, Bingyu Zhao
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12943-021-01398-4

N6-methyladenosine-modified circIGF2BP3 inhibits CD8+ T-cell responses to facilitate tumor immune evasion by promoting the deubiquitination of PD-L1 in non-small cell lung cancer
Cited by: 121
Author(s): Zhenchuan Liu, Tingting Wang, Yunlang She, Kaiqing Wu, Shaorui Gu, Lei Li, Chunyan Dong, Chang Chen, Yilu Zhou
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.102971

Prognostic values of immune scores and immune microenvironment-related genes for hepatocellular carcinoma
Cited by: 22
Author(s): Penglei Ge, Shifang Li, Weiwei Wang, Chunbo Li, Yu-Bin Fu, Zhengkai Feng, Lin Li, Gong Zhang, Zhiqiang Gao, Xiaowei Dang, Yang Wu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41398-020-00907-1

Adult mouse hippocampal transcriptome changes associated with long-term behavioral and metabolic effects of gestational air pollution toxicity
Cited by: 20
Author(s): Amin Haghani, Richard G. Johnson, Nick Woodward, Jason I. Feinberg, Kristy Lewis, Christine Ladd‐Acosta, Nikoo Safi, Andrew E. Jaffe, Constantinos Sioutas, Hooman Allayee, Daniel B. Campbell, Heather E. Volk, Caleb E. Finch, Todd E. Morgan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12943-021-01341-7

The role of mRNA in the development, diagnosis, treatment and prognosis of neural tumors
Cited by: 16
Author(s): Yiyang Zheng, Yingwei Luo, Xixi Chen, Huiting Li, Baojun Huang, Baofeng Zhou, Lei Zhu, Xianhui Kang, Geng Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-020-01007-w

Gene co-expression networks in peripheral blood capture dimensional measures of emotional and behavioral problems from the Child Behavior Checklist (CBCL)
Cited by: 2
Author(s): Jonathan Hess, Nicholas Nguyen, Jesse Suben, Ryan M Meath, Avery B. Albert, Sarah Van Orman, Kristin M. Anders, Patricia Forken, Cheryl Roe, Thomas G. Schulze, Stephen V. Faraone, Stephen J. Glatt
Software Mentions: 1
Published: about 6 years ago

10.1186/s12943-015-0350-0

Correlations between immune response and vascularization qRT-PCR gene expression clusters in squamous cervical cancer
Cited by: 36
Author(s): Simone Punt, Jeanine J. Houwing-Duistermaat, Iris A. Schulkens, Victor L. Thijssen, Elisabeth M. Osse, Cornelis D. de Kroon, Arjan W. Griffioen, Gert Jan Fleuren, Arko Gorter, Ekaterina S. Jordanova
Software Mentions: 1
Published: over 11 years ago

10.1186/s13041-019-0521-9

Identification of stress resilience module by weighted gene co-expression network analysis in Fkbp5-deficient mice
Cited by: 14
Author(s): Ji-Won Kwon, Yeong Jae Kim, Kyoung Soon Choi, Sihwan Seol, Hyo Jung Kang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40529-017-0176-8

Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis
Cited by: 11
Author(s): Po-Chih Shen, Ai-Ling Hour, Liyu Liu
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-11-589

Is human blood a good surrogate for brain tissue in transcriptional studies?
Cited by: 101
Author(s): Chaochao Cai, Peter Langfelder, Tova Fuller, Michael C. Oldham, Rui Luo, Leonard H van den Berg, Roel A. Ophoff, Steve Horvath
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2164-10-327

Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells
Cited by: 189
Author(s): Mike J. Mason, Guoping Fan, Kathrin Plath, Qing Zhou, Steve Horvath
Software Mentions: 1
Published: over 17 years ago

10.1186/s12863-015-0311-z

Gene expression in large pedigrees: analytic approaches
Cited by: 5
Author(s): Rita M. Cantor, Heather J. Cordell
Software Mentions: 1
Published: over 10 years ago

10.1038/s41408-021-00409-3

XPO1 inhibitors represent a novel therapeutic option in Adult T-cell Leukemia, triggering p53-mediated caspase-dependent apoptosis
Cited by: 3
Author(s): Eline Boons, Tatiane C Nogueira, Tim Dierckx, Soraya Maria Menezes, Maarten Jacquemyn, Sharon Tamir, Yosef Landesman, Lourdes Farré, Achiléa Lisboa Bittencourt, Keisuke Kataoka, Seishi Ogawa, Robert Snoeck, Gracíela Andrei, Johan Van Weyenbergh, Dirk Daelemans
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/eraa206

Low temperature modulates natural peel degreening in lemon fruit independently of endogenous ethylene
Cited by: 24
Author(s): Oscar W. Mitalo, Takumi Otsuki, Rui Okada, Saeka Obitsu, Kanae Masuda, Yuko Hojo, Takakazu Matsuura, Izumi C. Mori, Daigo Abe, William Olubero Asiche, Takashi Akagi, Yasutaka Kubo, Koichiro Ushijima
Software Mentions: 1
Published: over 6 years ago

10.1186/s13068-019-1440-9

Omics-based analyses revealed metabolic responses of Clostridium acetobutylicum to lignocellulose-derived inhibitors furfural, formic acid and phenol stress for butanol fermentation
Cited by: 38
Author(s): Bin Liu, Jing Zhang, Jian Yuan, Xiaolong Jiang, Lingyan Jiang, Guang Zhao, Di Huang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1003196

Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross
Cited by: 179
Author(s): Martin T. Ferris, David L. Aylor, Daniel Bottomly, Alan C. Whitmore, Lauri Aicher, Timothy A. Bell, Birgit Bradel-Tretheway, Janine T. Bryan, Ryan J. Buus, Lisa E. Gralinski, Bart L. Haagmans, Leonard McMillan, Darla R. Miller, Elizabeth Rosenzweig, William Valdar, Jeremy Wang, Gary A. Churchill, David W. Threadgill, Shannon K. McWeeney, Michael G. Katze, Fernando Pardo-Manuel de Villena, Ralph S. Baric, Mark T. Heise
Software Mentions: 1
Published: over 13 years ago

10.1186/s13068-018-1291-9

De novo transcriptome assembly of the bamboo snout beetle Cyrtotrachelus buqueti reveals ability to degrade lignocellulose of bamboo feedstock
Cited by: 20
Author(s): Chaobing Luo, Yuanqiu Li, Hong Liao, Yaolong Yang
Software Mentions: 1
Published: about 8 years ago

10.1042/BSR20202649

Screening of key genes related to the prognosis of mouse sepsis
Cited by: 9
Author(s): Muhu Chen, Xue Chen, Yingchun Hu, Xianfu Cai
Software Mentions: 1
Published: about 6 years ago

10.1042/BSR20204219

A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
Cited by: 6
Author(s): Huan Ding, Huan Hu, Fei Tian, Huaping Liang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12863-018-0648-1

Epigenetics, heritability and longitudinal analysis
Cited by: 5
Author(s): Haakon E. Nustad, Marcio Almeida, Angelo J. Canty, Marissa LeBlanc, Christian M. Page, Phillip E. Melton
Software Mentions: 1
Published: about 8 years ago

10.1042/BSR20203458

A panel of two miRNAs correlated to systolic blood pressure is a good diagnostic indicator for stroke
Cited by: 3
Author(s): Yujun Qi, Mingfeng Yuan, Qiong Yi, Yan Wang, Lei Xu, Changshui Xu, Min Lü
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12876-017-0637-2

miR-363-5p as potential prognostic marker for hepatocellular carcinoma indicated by weighted co-expression network analysis of miRNAs and mRNA
Cited by: 18
Author(s): Jun Zhang, Jia Fan, Chongming Zhou, Yanyu Qi
Software Mentions: 1
Published: over 9 years ago

10.1042/BSR20194067

Co-expression network-based identification of biomarkers correlated with the lymph node metastasis of patients with head and neck squamous cell carcinoma
Cited by: 6
Author(s): Yu Jin, Xing Qin
Software Mentions: 1
Published: over 6 years ago

10.1042/BSR20200124

Potential targets and molecular mechanism of miR-331-3p in hepatocellular carcinoma identified by weighted gene coexpression network analysis
Cited by: 6
Author(s): Qingjia Chi, Xinge Geng, Kang Xu, Chunli Wang, Han Zhao
Software Mentions: 1
Published: over 6 years ago

10.1042/BSR20203263

Exploration and validation of a novel prognostic signature based on comprehensive bioinformatics analysis in hepatocellular carcinoma
Cited by: 4
Author(s): Xiaofei Wang, Jie Qiao, Rongqi Wang
Software Mentions: 1
Published: almost 6 years ago

10.1042/BSR20191511

Weighted gene co-expression network analysis reveals specific modules and hub genes related to neuropathic pain in dorsal root ganglions
Cited by: 8
Author(s): Nan Cheng, Zheng Zhang, Yue Guo, Zhuolin Qiu, Jikun Du, Ziqing Hei, Xiang Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12862-017-1036-6

Annotating long intergenic non-coding RNAs under artificial selection during chicken domestication
Cited by: 12
Author(s): Yun-Mei Wang, Haibo Xu, Mingshan Wang, Newton O. Otecko, Lingqun Ye, Dongdong Wu, Yaping Zhang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41398-021-01536-y

Genome-wide DNA methylation and gene expression analyses in monozygotic twins identify potential biomarkers of depression
Cited by: 28
Author(s): Weijing Wang, Weilong Li, Yili Wu, Xiaocao Tian, Haiping Duan, Shuxia Li, Qihua Tan, Dongfeng Zhang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12872-016-0217-3

Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease
Cited by: 66
Author(s): Jing Liu, Ling Jing, Xilin Tu
Software Mentions: 1
Published: over 10 years ago

10.3390/biom10040549

Biochemical and Comparative Transcriptome Analyses Reveal Key Genes Involved in Major Metabolic Regulation Related to Colored Leaf Formation in Osmanthus fragrans ‘Yinbi Shuanghui’ during Development
Cited by: 13
Author(s): Xuan Chen, Xia Yang, Jun Xie, Wenjie Ding, Yuli Li, Yuanzheng Yue
Software Mentions: 1
Published: over 6 years ago

10.1007/s13238-016-0247-8

Coupled electrophysiological recording and single cell transcriptome analyses revealed molecular mechanisms underlying neuronal maturation
Cited by: 34
Author(s): Xiaoying Chen, Kunshan Zhang, Libing Zhou, Xinpei Gao, Junbang Wang, Yinan Yao, Fei He, Yuan Luo, Yongchun Yu, Siguang Li, Liming Cheng, Yi Sun
Software Mentions: 1
Published: over 10 years ago

10.1007/s12975-020-00869-y

Molecular Correlates of Hemorrhage and Edema Volumes Following Human Intracerebral Hemorrhage Implicate Inflammation, Autophagy, mRNA Splicing, and T Cell Receptor Signaling
Cited by: 21
Author(s): Marc Durocher, Bodie Knepp, Alan Yee, Glen C. Jickling, Fernando Rodríguez Rodríguez, Kwan Ng, Xinhua Zhan, Farah Hamade, Eva Ferino, Hajar Amini, Paulina Carmona-Mora, Heather Hull, Bradley P. Ander, Frank R. Sharp, Boryana Stamova
Software Mentions: 1
Published: almost 6 years ago

10.1007/s13238-018-0559-y

Unbiased transcriptomic analyses reveal distinct effects of immune deficiency in CNS function with and without injury
Cited by: 9
Author(s): Dandan Luo, Weihong Ge, Xiao Hu, Chen Li, Chia Ming Lee, Libing Zhou, Zhourui Wu, Juehua Yu, Shaochong Lin, Jing Yu, Wei Xu, Lei Chen, Chong Zhang, Kun Jiang, Xuding Zhu, Haotian Li, Xinpei Gao, Yanan Geng, Bo Jing, Zhen Wang, Changhong Zheng, Rongrong Zhu, Yan Qiao, Qing Lin, Keqiang Ye, Yi Sun, Liming Cheng
Software Mentions: 1
Published: over 8 years ago

10.3390/biom8030070

Functional Annotation of Caenorhabditis elegans Genes by Analysis of Gene Co-Expression Networks
Cited by: 4
Author(s): Wei Liu, Ling Li, Yiruo He, Sen Cai, Wenjie Zhao, Hao Zheng, Yuexian Zhong, Shaobo Wang, Yang Zou, Zhenhua Xu, Yu Zhang, Wei Tu
Software Mentions: 1
Published: about 8 years ago

10.1155/2020/3876834

Identification of Genes Associated with the Metastasis of Pheochromocytoma/Paraganglioma Based on Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Qingde Su, Qinpei Ding, Zunni Zhang, Zheng Yang, Yuling Qiu, Xiaohong Li, Wuning Mo
Software Mentions: 1
Published: over 6 years ago

10.1186/s12872-021-01973-z

Comparative transcriptome analysis of transcripts of uncertain coding potential in septic myocardial depression
Cited by: 1
Author(s): Tie-Ning Zhang, Ri Wen, Ni Yang, Chunfeng Liu
Software Mentions: 1
Published: over 5 years ago

10.1136/rmdopen-2015-000183

Leucocyte subset-specific type 1 interferon signatures in SLE and other immune-mediated diseases
Cited by: 25
Author(s): Shaun Flint, Vojislav Jovanović, Boon Wee Teo, Anselm Mak, Julian Thumboo, Eoín McKinney, James C. Lee, Paul A. MacAry, David M. Kemeny, David Jayne, Kok Yong Fong, Paul Lyons, Kenneth G. C. Smith
Software Mentions: 1
Published: over 10 years ago

10.1098/rsos.172062

Transcriptional analyses provide new insight into the late-stage immune response of a diseased Caribbean coral
Cited by: 28
Author(s): Lauren E. Fuess, Whitney T. Mann, Lea R. Jinks, Vanessa Brinkhuis, Laura D. Mydlarz
Software Mentions: 1
Published: over 8 years ago

10.1155/2020/4169691

Identifying Tumorigenesis and Prognosis-Related Genes of Lung Adenocarcinoma: Based on Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Ming Yi, Tianye Li, Shuang Qin, Shengnan Yu, Qian Chu, An‐Ping Li, Kongming Wu
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.103979

LINC01235-TWIST2 feedback loop facilitates epithelial–mesenchymal transition in gastric cancer by inhibiting THBS2
Cited by: 16
Author(s): Yongjun Tan, Xing Yao, Ban-Lai Ran, Chao Zhang, Siwei Pan, Wei An, Qingchuan Chen, Hui Xu
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.redox.2021.101933

Network analysis of nitrate-sensitive oral microbiome reveals interactions with cognitive function and cardiovascular health across dietary interventions
Cited by: 20
Author(s): Anni Vanhatalo, Joanna E. L’Heureux, James Kelly, Jamie R. Blackwell, Lee J. Wylie, Jonathan Fulford, Paul G. Winyard, David Wynne Williams, Mark van der Giezen, Andrew M. Jones
Software Mentions: 1
Published: over 5 years ago

10.1186/s12958-021-00785-2

Abnormally increased DNA methylation in chorionic tissue might play an important role in development of ectopic pregnancy
Cited by: 1
Author(s): Chen Wen, Yang Liu, Ruiqing Zhang, Yang Yao, Shuangdi Li, Jiarong Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12872-021-02211-2

Identification of key miRNAs and mRNAs related to coronary artery disease by meta-analysis
Cited by: 3
Author(s): Long Liu, Jingze Zhang, Mei Yi Wu, Haiming Xu
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/4921387

Investigation of Potential Genetic Biomarkers and Molecular Mechanism of Ulcerative Colitis Utilizing Bioinformatics Analysis
Cited by: 19
Author(s): Jiaqi Zhang, Xue Wang, Lin Xu, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-017-0558-1

Network-based analysis reveals novel gene signatures in peripheral blood of patients with chronic obstructive pulmonary disease
Cited by: 31
Author(s): Ma’en Obeidat, Yunlong Nie, Virginia Chen, Casey P. Shannon, Anand Kumar Andiappan, Bernett Lee, Olaf Rötzschke, Peter J. Castaldi, Craig P. Hersh, Nick Fishbane, Raymond T. Ng, Bruce M. McManus, Bruce E. Miller, Stephen I. Rennard, Peter D. Paré, Don D. Sin
Software Mentions: 1
Published: over 9 years ago

10.1186/s12931-018-0965-y

Do sputum or circulating blood samples reflect the pulmonary transcriptomic differences of COPD patients? A multi-tissue transcriptomic network META-analysis
Cited by: 8
Author(s): Rosa Faner, Jarrett Morrow, Sandra Casas-Recasens, Suzanne M. Cloonan, Guillaume Noell, Alejandra López-Giraldo, Ruth Tal‐Singer, Bruce E. Miller, Edwin K. Silverman, Àlvar Agustí, Craig P. Hersh
Software Mentions: 1
Published: almost 8 years ago

10.1155/2021/9957569

Application of Weighted Gene Coexpression Network Analysis to Identify Key Modules and Hub Genes in Systemic Juvenile Idiopathic Arthritis
Cited by: 5
Author(s): Mi Zhou, Ruru Guo, Yong Fei Wang, Wanling Yang, Rongxiu Li, Liangjing Lu
Software Mentions: 1
Published: about 5 years ago

10.1186/s12931-019-1105-z

Multi-level immune response network in mild-moderate Chronic Obstructive Pulmonary Disease (COPD)
Cited by: 33
Author(s): Tamara Cruz, Alejandra López-Giraldo, Guillaume Noell, Sandra Casas-Recasens, Tamara García, Laureano Molins, Manel Juan, Marco A. Fernández, Àlvar Agustí, Rosa Faner
Software Mentions: 1
Published: over 7 years ago

10.1155/2015/316735

Gene Coexpression and Evolutionary Conservation Analysis of the Human Preimplantation Embryos
Cited by: 3
Author(s): Tiancheng Liu, Yuling Lin, Guohui Ding, Zhen Wang, Lei Liu, Hong Li, Yixue Li
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12885-021-08030-0

An energy metabolism-based eight-gene signature correlates with the clinical outcome of esophagus carcinoma
Cited by: 8
Author(s): Wei Zheng, Chaoying Chen, Jianghao Yu, Chengfeng Jin, Tie-Mei Han
Software Mentions: 1
Published: over 5 years ago

10.1186/s12284-020-00437-w

Long Non-coding RNAs Responsive to Blast Fungus Infection in Rice
Cited by: 16
Author(s): Lanlan Wang, Jingjing Jin, Lihua Li, Shaohong Qu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12284-020-00439-8

Weighted Gene Co-Expression Network Coupled with a Critical-Time-Point Analysis during Pathogenesis for Predicting the Molecular Mechanism Underlying Blast Resistance in Rice
Cited by: 2
Author(s): Dagang Tian, Zaijie Chen, Yan Lin, Ziqiang Chen, Zonghua Wang, Wang Feng
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/5478574

The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
Cited by: 18
Author(s): Hao Ding, Xiao-Xing Xiong, Guanlan Fan, Yuexiong Yi, Yurou Chen, Jingtao Wang, Wei Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-018-4176-1

Integrated genomic analysis identifies clinically relevant subtypes of renal clear cell carcinoma
Cited by: 27
Author(s): Peng Wu, Jiali Liu, Shimei Pei, Changpeng Wu, Kai Yang, Shupeng Wang, Song Wu
Software Mentions: 1
Published: over 8 years ago

10.1155/2020/6782046

Gene Coexpression Network and Module Analysis across 52 Human Tissues
Cited by: 1
Author(s): Binsheng He, Junlin Xu, Yingxiang Tian, Bo Liao, Jidong Lang, Huixin Lin, Xiaofei Mo, Qingqing Lu, Geng Tian, Pingping Bing
Software Mentions: 1
Published: over 6 years ago

10.1155/2018/2914280

A Risk Stratification Model for Lung Cancer Based on Gene Coexpression Network and Deep Learning
Cited by: 13
Author(s): Hongyoon Choi, Kwon Joong Na
Software Mentions: 1
Published: almost 9 years ago

10.1155/2019/9637479

Xiao-Qing-Long Tang Prevents Cardiomyocyte Hypertrophy, Fibrosis, and the Development of Heart Failure with Preserved Ejection Faction in Rats by Modulating the Composition of the Gut Microbiota
Cited by: 14
Author(s): Guocheng Zhou, Yue-Hua Jiang, Daifu Ma, Yongcheng Wang, Jinlong Yang, Jiye Chen, Chen-Yu Chi, Xiaowei Han, Zhaoyu Li, Xiao Li
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-017-3413-3

Identifying global expression patterns and key regulators in epithelial to mesenchymal transition through multi-study integration
Cited by: 24
Author(s): Princy Parsana, Sarah R. Amend, James R. Hernandez, Kenneth J. Pienta, Alexis Battle
Software Mentions: 1
Published: over 9 years ago

10.1155/2020/4264291

Coexpression Network Analysis Identifies a Novel Nine-RNA Signature to Improve Prognostic Prediction for Prostate Cancer Patients
Cited by: 7
Author(s): Jiarong Cai, Zheng Chen, Xuelian Chen, He Huang, Xiao Lin, Benchun Miao
Software Mentions: 1
Published: about 6 years ago

10.1155/2021/1093702

Microarray Data Mining and Preliminary Bioinformatics Analysis of Hepatitis D Virus-Associated Hepatocellular Carcinoma
Cited by: 6
Author(s): Zhe Yu, Xuemei Ma, Wei Zhang, Xiujuan Chang, Lihui An, Ming Niu, Yan Chen, Chao Sun, Yongping Yang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41597-021-00828-8

Nelumbo genome database, an integrative resource for gene expression and variants of Nelumbo nucifera
Cited by: 22
Author(s): Hui Li, Xingyu Yang, Yue Zhang, Zhiyan Gao, Yuting Liang, Jin‐Ming Chen, Tao Shi
Software Mentions: 1
Published: almost 6 years ago

10.1155/2016/3962761

Differentially Coexpressed Disease Gene Identification Based on Gene Coexpression Network
Cited by: 2
Author(s): Xue Jiang, Han Zhang, Xiongwen Quan
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12885-021-07817-5

Comprehensive analysis of ceRNA network related to lincRNA in glioblastoma and prediction of clinical prognosis
Cited by: 3
Author(s): Guangdong Liu, Danian Liu, Jingjing Huang, Jianxin Li, Chuang Wang, Shiqiang Ge, Haidong Gong
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep12298

Network analysis of immunotherapy-induced regressing tumours identifies novel synergistic drug combinations
Cited by: 55
Author(s): W. Joost Lesterhuis, Catherine Rinaldi, Anya C. Jones, Esdy N. Rozali, Ian M. Dick, Andrea Khong, Louis Boon, Bruce Robinson, Anna K. Nowak, Anthony Bosco, Richard Lake
Software Mentions: 1
Published: over 11 years ago

10.1155/2020/8872577

Identification of a β-Arrestin 2 Mutation Related to Autism by Whole-Exome Sequencing
Cited by: 5
Author(s): Yunfei Tang, Yamei Liu, Lei Tong, Shini Feng, Dongshu Du, Fuxue Chen
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep13248

Derivation of a fifteen gene prognostic panel for six cancers
Cited by: 22
Author(s): Mamata F. Khirade, Girdhari Lal, Sharmila A. Bapat
Software Mentions: 1
Published: about 11 years ago

10.1128/mSystems.00036-16

RNA Sequencing-Based Genome Reannotation of the Dermatophyte <i>Arthroderma benhamiae</i> and Characterization of Its Secretome and Whole Gene Expression Profile during Infection
Cited by: 30
Author(s): Van Du T. Tran, Niccolò De Coi, Marc Feuermann, Emanuel Schmid‐Siegert, Elena-Tatiana Băguţ, Bernard Mignon, Patrice Waridel, Corinne Peter, Sylvain Pradervand, Marco Pagni, Michel Monod
Software Mentions: 1
Published: about 10 years ago

10.1186/s12938-019-0625-6

Potential biomarkers of acute myocardial infarction based on weighted gene co-expression network analysis
Cited by: 21
Author(s): Zhihua Liu, Chenguang Ma, Junhua Gu, Ming Yu
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep17494

Honey bee microRNAs respond to infection by the microsporidian parasite Nosema ceranae
Cited by: 15
Author(s): Qiang Huang, Yanping Chen, Rui Wu Wang, Ryan S. Schwarz, Jay D. Evans
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep18045

Proteome Analysis of Renoprotection Mediated by a Novel Cyclic Helix B Peptide in Acute Kidney Injury
Cited by: 18
Author(s): Cheng Yang, Junjun Liu, Li Long, Man Hu, Ya‐Qiu Long, Xiaohui Liu, Tongyu Zhu, Xiao Huang, Shouliang Zhao, Shangfeng Liu, Ruiming Rong
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep19430

DNA co-methylation modules in postmortem prefrontal cortex tissues of European Australians with alcohol use disorders
Cited by: 66
Author(s): Fan Wang, Hao Xu, Hongyu Zhao, Joel Gelernter, Huiping Zhang
Software Mentions: 1
Published: almost 11 years ago

10.3390/biology10020127

Comprehensive Analysis and Expression Profiling of PIN, AUX/LAX, and ABCB Auxin Transporter Gene Families in Solanum tuberosum under Phytohormone Stimuli and Abiotic Stresses
Cited by: 11
Author(s): Chan Yang, Dongdong Wang, Chao Zhang, Minghui Ye, Nana Kong, Hongwei Ma, Qin Chen
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.102653

Network analysis of human muscle adaptation to aging and contraction
Cited by: 14
Author(s): Craig R. G. Willis, Ryan M. Ames, Colleen S. Deane, Bethan E. Phillips, Catherine Boereboom, Haitham Abdulla, Syed S I Bukhari, Jonathan N. Lund, John P. Williams, Daniel J. Wilkinson, Kenneth Smith, Fawzi Kadi, Nathaniel J. Szewczyk, Philip J. Atherton, Timothy Etheridge
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.102422

Selected by gene co-expression network and molecular docking analyses, ENMD-2076 is highly effective in glioblastoma-bearing rats
Cited by: 16
Author(s): Sheng Zhong, Yang Bai, Bo Wu, Junliang Ge, Shanshan Jiang, Weihang Li, Xinhui Wang, Junan Ren, Haidong Xu, Yong Chen
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12885-021-08066-2

A novel tp53-associated nomogram to predict the overall survival in patients with pancreatic cancer
Cited by: 15
Author(s): Xun Liu, Bobo Chen, Jiahui Chen, Shung Shung Sun
Software Mentions: 1
Published: over 5 years ago

10.1038/srep25261

Elucidation of molecular and functional heterogeneity through differential expression network analyses of discrete tumor subsets
Cited by: 6
Author(s): Rutika R. Naik, Nilesh Gardi, Sharmila A. Bapat
Software Mentions: 1
Published: over 10 years ago

10.1038/srep26396

The simple neuroendocrine-immune regulatory network in oyster Crassostrea gigas mediates complex functions
Cited by: 38
Author(s): Zhaoqun Liu, Lingling Wang, Zhi Zhou, Ying Sun, Mengqiang Wang, Hao Wang, Zujun Hou, Dahai Gao, Qiang Gao, Linsheng Song
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-14-365

Network-based differential gene expression analysis suggests cell cycle related genes regulated by E2F1 underlie the molecular difference between smoker and non-smoker lung adenocarcinoma
Cited by: 22
Author(s): Chao Wu, Jun Zhu, Xuegong Zhang
Software Mentions: 1
Published: almost 13 years ago

10.1038/srep28422

Construction and application of a co-expression network in Mycobacterium tuberculosis
Cited by: 31
Author(s): Jun Jiang, Xian Sun, Wei Wu, Li Li, Hai Wu, Lu Zhang, Guohua Yu, Yao Li
Software Mentions: 1
Published: over 10 years ago

10.1186/s12859-017-1590-3

Preservation affinity in consensus modules among stages of HIV-1 progression
Cited by: 14
Author(s): Sk Md Mosaddek Hossain, Sumanta Ray, Anirban Mukhopadhyay
Software Mentions: 1
Published: over 9 years ago

10.1038/srep29052

Integrative Network-based Analysis of Magnetic Resonance Spectroscopy and Genome Wide Expression in Glioblastoma multiforme
Cited by: 19
Author(s): Dieter Henrik Heiland, Irina Mader, Pascal Schlosser, Dietmar Pfeifer, Maria Stella Carro, Thomas Lange, Ralf Schwarzwald, Ioannis Vasilikos, Horst Urbach, Astrid Weyerbrock
Software Mentions: 1
Published: over 10 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479