cran: WGCNA | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-05280-6

The integrated pathway of TGFβ/Snail with TNFα/NFκB may facilitate the tumor-stroma interaction in the EMT process and colorectal cancer prognosis
Cited by: 44
Author(s): Hui Li, Anjing Zhong, Si Li, Xianwen Meng, Xue Wang, Fangying Xu, Maode Lai
Software Mentions: 1
Published: about 9 years ago

10.3390/metabo9080157

Bronchoalveolar Lavage Fluid from COPD Patients Reveals More Compounds Associated with Disease than Matched Plasma
Cited by: 27
Author(s): Eitan Halper-Stromberg, Lucas A. Gillenwater, Charmion Cruickshank‐Quinn, Wanda K. O’Neal, Nichole Reisdorph, Irina Petrache, Yonghua Zhuang, Wassim W. Labaki, Jeffrey L. Curtis, James M. Wells, Stephen I. Rennard, Katherine Pratte, Prescott G. Woodruff, Kathleen A. Stringer, Katerina Kechris, Russell P. Bowler
Software Mentions: 1
Published: about 7 years ago

10.3390/metabo11030161

Metabolomic Profiling Reveals Sex Specific Associations with Chronic Obstructive Pulmonary Disease and Emphysema
Cited by: 14
Author(s): Lucas A. Gillenwater, Katerina Kechris, Katherine Pratte, Nichole Reisdorph, Irina Petrache, Wassim W. Labaki, Wanda K. O’Neal, Jerry A. Krishnan, Victor E. Ortega, Dawn L. DeMeo, Russell P. Bowler
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-06701-2

Characterization and expression analysis of the WRKY gene family in moso bamboo
Cited by: 34
Author(s): Long Li, Shaohua Mu, Zhanchao Cheng, Yuanwen Cheng, Ying Zhang, Ying Miao, Cheng‐Lin Hou, Xueping Li, Jian Gao
Software Mentions: 1
Published: about 9 years ago

10.4317/medoral.24385

Whole exome sequencing and system biology analysis support the "two-hit" mechanism in the onset of Ameloblastoma
Cited by: 4
Author(s): Yueqi Shi, Mengyu Li, Yinglan Yu, Yuqiong Zhou, Shaoyi Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12863-018-0648-1

Epigenetics, heritability and longitudinal analysis
Cited by: 5
Author(s): Haakon E. Nustad, Marcio Almeida, Angelo J. Canty, Marissa LeBlanc, Christian M. Page, Phillip E. Melton
Software Mentions: 1
Published: about 8 years ago

10.18632/aging.202761

A five-m6A regulatory gene signature is a prognostic biomarker in lung adenocarcinoma patients
Cited by: 12
Author(s): Ximei Wu, Hongxu Sheng, Luming Wang, Pinghui Xia, Yiqing Wang, Li Yu, Wang Lv, Jian Hu
Software Mentions: 1
Published: over 5 years ago

10.1097/MD.0000000000009738

Identification of gene expression models for laryngeal squamous cell carcinoma using co-expression network analysis
Cited by: 9
Author(s): Chao Yang, Shufang Wang, Xiangli Yang, Lin Wang, Lin Niu, Jixiang Liu
Software Mentions: 1
Published: over 8 years ago

10.18632/aging.101550

A seven-long noncoding RNA signature predicts overall survival for patients with early stage non-small cell lung cancer
Cited by: 39
Author(s): Ting Lin, Yunong Fu, Xing Zhang, Jingxian Gu, Xiaojie Ma, Runchen Miao, Xiaohong Xiang, Wenquan Niu, Kai Qu, Chang Liu, Qifei Wu
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00335-016-9656-5

Uncovering the liver’s role in immunity through RNA co-expression networks
Cited by: 11
Author(s): Kylie K. Harrall, Katerina Kechris, Boris Tabakoff, Paula L. Hoffman, Lisa M. Hines, Hidekazu Tsukamoto, Michal Pravenec, Morton P. Printz, Laura Saba
Software Mentions: 1
Published: about 10 years ago

10.26508/lsa.202101091

Serum proteomics reveals disorder of lipoprotein metabolism in sepsis
Cited by: 2
Author(s): Xi Liang, Tianzhou Wu, Qi Chen, Jing Jiang, Yongpo Jiang, Yiwen Ruan, Huaping Zhang, Sheng Zhang, Zhang Chao, Peng Chen, Yuhang Lv, Jiaojiao Xin, Dongyan Shi, Xin Chen, Li Jun, Yinghe Xu
Software Mentions: 1
Published: about 5 years ago

10.1155/2019/9567641

Weighted Gene Coexpression Network Analysis Identified MicroRNA Coexpression Modules and Related Pathways in Type 2 Diabetes Mellitus
Cited by: 26
Author(s): Tianyu Feng, Kexin Li, Pingping Zheng, Yanjun Wang, Yaogai Lv, Ли Шен, Chen Yang, Zhiqiang Xue, Bo Li, Lina Jin, Yan Yao
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/6651009

Candidate Genes Identified in Systemic Sclerosis-Related Pulmonary Arterial Hypertension Were Associated with Immunity, Inflammation, and Cytokines
Cited by: 5
Author(s): Zhixiao Xu, Jiaxing Ruan, Lingyun Pan, Chengshui Chen
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/3946913

Metabolic Modulation and Potential Biomarkers of the Prognosis Identification for Severe Aortic Stenosis after TAVR by a Metabolomics Study
Cited by: 6
Author(s): Yanbiao Liao, Chang Liu, Tingting Xiong, Mingyue Zhao, Wen Zheng, Yuan Feng, Yijian Li, Yuanweixiang Ou, Zhengang Zhang, Yong Peng, Jiafu Wei, Qiao Li, Wei Meng, Xiaojing Liu, Mao Chen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40170-016-0143-y

Integration of omics: more than the sum of its parts
Cited by: 84
Author(s): Joerg M. Buescher, Edward M. Driggers
Software Mentions: 1
Published: over 10 years ago

10.1002/cam4.3240

Development and validation of an immune‐related prognostic signature in lung adenocarcinoma
Cited by: 69
Author(s): Sijin Sun, Wei Guo, Zhen Wang, Xin Wang, Guochao Zhang, Hao Zhang, Renda Li, Yibo Gao, Bin Qiu, Fengwei Tan, Yushun Gao, Qi Xue, Shugeng Gao, Jie He
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.19828

Identification of long non-coding RNA signature for paclitaxel-resistant patients with advanced ovarian cancer
Cited by: 15
Author(s): Luqing Wang, Yan-Jun Hu, Xiaohong Xiang, Kai Qu, Yue Teng
Software Mentions: 1
Published: about 9 years ago

10.1002/cam4.3369

Microarray profiling of differentially expressed lncRNAs and mRNAs in lung adenocarcinomas and bioinformatics analysis
Cited by: 12
Author(s): Fei He, Liping Huang, Qiuping Xu, Weimin Xiong, Shuang Liu, Huimin Yang, Wenzhou Lu, Rendong Xiao, Zhijian Hu, Lin Cai
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-69249-8

Gene biomarker discovery at different stages of Alzheimer using gene co-expression network approach
Cited by: 35
Author(s): Negar Sadat Soleimani Zakeri, Saeid Pashazadeh, Habib MotieGhader
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-69708-2

Integrated bioinformatics analysis to decipher molecular mechanism of compound Kushen injection for esophageal cancer by combining WGCNA with network pharmacology
Cited by: 19
Author(s): Wei Zhou, Jiarui Wu, Jingyuan Zhang, Xinkui Liu, Siyu Guo, Shanshan Jia, Xiaomeng Zhang, Yimin Zhu, Miaomiao Wang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12935-021-01880-5

Silencing SHMT2 inhibits the progression of tongue squamous cell carcinoma through cell cycle regulation
Cited by: 12
Author(s): Yan Liao, Fang Wang, Yadong Zhang, Hao Cai, Song Fan, Jinsong Hou
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-021-02052-1

GNRH1 and LTB4R might be novel immune-related prognostic biomarkers in clear cell renal cell carcinoma (ccRCC)
Cited by: 10
Author(s): Hua-Hui Wu, Xin Yan, Chen Zhao, Guo-Wei Du, Xiaojie Bai, Kurerban Tuoheti, Tong-Zu Liu
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-70578-x

A proteogenomic profile of early lung adenocarcinomas by protein co-expression network and genomic alteration analysis
Cited by: 3
Author(s): Toshihide Nishimura, Hiroki Nakamura, Kien Thiam Tan, De-Wei Zhuo, Kiyonaga Fujii, Hirotaka Koizumi, Saeko Naruki, Masayuki Takagi, Naoki Furuya, Yasufumi Kato, Shu‐Jen Chen, Harubumi Kato, Hisashi Saji
Software Mentions: 1
Published: about 6 years ago

10.1186/s12935-021-02047-y

LRRK2 is a candidate prognostic biomarker for clear cell renal cell carcinoma
Cited by: 3
Author(s): Chunxiu Yang, Jingjing Pang, Jian Xu, He Pan, Yueying Li, Huainian Zhang, Huan Liu, Shu‐Yuan Xiao
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.202996

Circular RNA circitga7 accelerates glioma progression via miR-34a-5p/VEGFA axis
Cited by: 10
Author(s): Ling Qi, Weiyao Wang, Guifang Zhao, Hong Jiang, Yu Zhang, Donghai Zhao, Hong Jin, Haojun Yu, Haidong Xu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-017-0458-y

Integrated genomic characterization of cancer genes in glioma
Cited by: 22
Author(s): Aijun Liang, Bin Zhou, Wei Sun
Software Mentions: 1
Published: almost 9 years ago

10.18632/aging.202596

Integrative analysis of exosomal microRNA-149-5p in lung adenocarcinoma
Cited by: 7
Author(s): Wen Tian, Yang He, Baosen Zhou
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.18646

Identification of two novel biomarkers of rectal carcinoma progression and prognosis via co-expression network analysis
Cited by: 19
Author(s): Min Sun, Taojiao Sun, Zhong He, Bin Xiong
Software Mentions: 1
Published: about 9 years ago

10.1186/s13058-018-1043-6

Foxf2 plays a dual role during transforming growth factor beta-induced epithelial to mesenchymal transition by promoting apoptosis yet enabling cell junction dissolution and migration
Cited by: 19
Author(s): Nathalie Meyer-Schaller, Chantal Heck, Stefanie Tiede, M. Deniz Yilmaz, Gerhard Christofori
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00429-016-1338-2

Brain transcriptome atlases: a computational perspective
Cited by: 17
Author(s): Ahmed Mahfouz, Sjoerd M. H. Huisman, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-020-75039-z

Crucial transcripts predict response to initial immunoglobulin treatment in acute Kawasaki disease
Cited by: 9
Author(s): Zhimin Geng, Jingjing Liu, Jian Hu, Ying Wang, Yijing Tao, Fei Zheng, Yujia Wang, Songling Fu, Wei Wang, Chunhong Xie, Yiying Zhang, Fangqi Gong
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-75511-w

Dynamic transcriptional response of Saccharomyces cerevisiae cells to copper
Cited by: 7
Author(s): Sebnem Oc, Serpil Eraslan, Betül Kırdar
Software Mentions: 1
Published: almost 6 years ago

10.1002/brb3.2309

Coexpression of the discoidin domain receptor 1 gene with oligodendrocyte‐related and schizophrenia risk genes in the developing and adult human brain
Cited by: 6
Author(s): Gerard Muntané, Marc Chillida, Selena Aranda, Arcadi Navarro, Elisabet Vilella
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-75945-2

Weighted miRNA co-expression networks analysis identifies circulating miRNA predicting overall survival in hepatocellular carcinoma patients
Cited by: 14
Author(s): Devis Pascut, Muhammad Yogi Pratama, F Gilardi, Mauro Giuffré, Lory Saveria Crocè, Claudio Tiribelli
Software Mentions: 1
Published: almost 6 years ago

10.1093/brain/awaa270

Differences in network controllability and regional gene expression underlie hallucinations in Parkinson’s disease
Cited by: 27
Author(s): Angeliki Zarkali, Peter McColgan, Mina Ryten, Regina H Reynolds, Louise‐Ann Leyland, Andrew J. Lees, Geraint Rees, Rimona S Weil
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76011-7

Singular manifolds of proteomic drivers to model the evolution of inflammatory bowel disease status
Cited by: 2
Author(s): Ian Morilla, Thibaut Léger, Assiya Marah, Isabelle Pic, Hatem Zaag, Éric Ogier–Denis
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76117-y

Analysis of transcriptional modules during human fibroblast ageing
Cited by: 9
Author(s): Yaelim Lee, G. V. Shivashankar
Software Mentions: 1
Published: almost 6 years ago

10.1093/brain/awv127

First effects of rising amyloid-β in transgenic mouse brain: synaptic transmission and gene expression
Cited by: 64
Author(s): Damian M. Cummings, Wenfei Liu, Erik Portelius, Bayram Sevinç, Marina V. Yasvoina, Hinze Ho, Hélène Smits, Shabinah S. Ali, Rivka Steinberg, Chrysia-Maria Pegasiou, Owain T. James, Mar Matarı́n, Jill C. Richardson, Henrik Zetterberg, Kaj Blennow, John Hardy, Dervis A. Salih, Frances A. Edwards
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-020-76750-7

Transcriptome profiling and weighted gene co-expression network analysis of early floral development in Aquilegia coerulea
Cited by: 11
Author(s): Ya Min, Elena M. Kramer
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40529-017-0176-8

Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis
Cited by: 11
Author(s): Po-Chih Shen, Ai-Ling Hour, Liyu Liu
Software Mentions: 1
Published: over 9 years ago

10.1186/s12876-017-0637-2

miR-363-5p as potential prognostic marker for hepatocellular carcinoma indicated by weighted co-expression network analysis of miRNAs and mRNA
Cited by: 18
Author(s): Jun Zhang, Jia Fan, Chongming Zhou, Yanyu Qi
Software Mentions: 1
Published: about 9 years ago

10.1038/s41408-021-00409-3

XPO1 inhibitors represent a novel therapeutic option in Adult T-cell Leukemia, triggering p53-mediated caspase-dependent apoptosis
Cited by: 3
Author(s): Eline Boons, Tatiane C Nogueira, Tim Dierckx, Soraya Maria Menezes, Maarten Jacquemyn, Sharon Tamir, Yosef Landesman, Lourdes Farré, Achiléa Lisboa Bittencourt, Keisuke Kataoka, Seishi Ogawa, Robert Snoeck, Gracíela Andrei, Johan Van Weyenbergh, Dirk Daelemans
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-75217-z

Quantitative comparison of the biomass-degrading enzyme repertoires of five filamentous fungi
Cited by: 46
Author(s): Magnus Ø. Arntzen, Oskar Bengtsson, Anikó Várnai, Francesco Delogu, Geir Mathiesen, Vincent G. H. Eijsink
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13068-019-1440-9

Omics-based analyses revealed metabolic responses of Clostridium acetobutylicum to lignocellulose-derived inhibitors furfural, formic acid and phenol stress for butanol fermentation
Cited by: 38
Author(s): Bin Liu, Jing Zhang, Jian Yuan, Xiaolong Jiang, Lingyan Jiang, Guang Zhao, Di Huang
Software Mentions: 1
Published: over 7 years ago

10.1186/s13068-018-1291-9

De novo transcriptome assembly of the bamboo snout beetle Cyrtotrachelus buqueti reveals ability to degrade lignocellulose of bamboo feedstock
Cited by: 20
Author(s): Chaobing Luo, Yuanqiu Li, Hong Liao, Yaolong Yang
Software Mentions: 1
Published: almost 8 years ago

10.18632/aging.202432

Identification of hub genes and key pathways in the emphysema phenotype of COPD
Cited by: 6
Author(s): Qiunan Zuo, Youyu Wang, Deqing Yang, Shujin Guo, Xiaohui Li, Jiajia Dong, Chun Wan, Yongchun Shen, Fuqiang Wen
Software Mentions: 1
Published: over 5 years ago

10.1042/BSR20202649

Screening of key genes related to the prognosis of mouse sepsis
Cited by: 9
Author(s): Muhu Chen, Xue Chen, Yingchun Hu, Xianfu Cai
Software Mentions: 1
Published: almost 6 years ago

10.1042/BSR20204219

A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
Cited by: 6
Author(s): Huan Ding, Huan Hu, Fei Tian, Huaping Liang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12862-017-1036-6

Annotating long intergenic non-coding RNAs under artificial selection during chicken domestication
Cited by: 12
Author(s): Yun-Mei Wang, Haibo Xu, Mingshan Wang, Newton O. Otecko, Lingqun Ye, Dongdong Wu, Yaping Zhang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-021-81509-9

Protein co-expression networks identified from HOT lesions of ER+HER2–Ki-67high luminal breast carcinomas
Cited by: 3
Author(s): Kimito Yamada, Toshihide Nishimura, Midori Wakiya, Eiichi Satoh, Tetsuya Fukuda, Keigo Amaya, Yoshio Bando, Hiroshi Honda, Takashi Ishikawa
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-81303-7

Weighted gene co-expression network analysis identifies molecular pathways and hub genes involved in broiler White Striping and Wooden Breast myopathies
Cited by: 19
Author(s): Martina Bordini, Martina Zappaterra, Francesca Soglia, Massimiliano Petracci, Roberta Davoli
Software Mentions: 1
Published: over 5 years ago

10.1042/BSR20203458

A panel of two miRNAs correlated to systolic blood pressure is a good diagnostic indicator for stroke
Cited by: 3
Author(s): Yujun Qi, Mingfeng Yuan, Qiong Yi, Yan Wang, Lei Xu, Changshui Xu, Min Lü
Software Mentions: 1
Published: over 5 years ago

10.1042/BSR20194067

Co-expression network-based identification of biomarkers correlated with the lymph node metastasis of patients with head and neck squamous cell carcinoma
Cited by: 6
Author(s): Yu Jin, Xing Qin
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.21262

Vemurafenib-resistance via de novo RBM genes mutations and chromosome 5 aberrations is overcome by combined therapy with palbociclib in thyroid carcinoma with BRAFV600E
Cited by: 38
Author(s): Zeus A. Antonello, Nancy Hsu, Manoj Bhasin, Giovanni Roti, Mukta Joshi, Paul Van Hummelen, Emily Ye, Agnes S. Lo, S. Ananth Karumanchi, Christine R. Bryke, Carmelo Nucera
Software Mentions: 1
Published: almost 9 years ago

10.1042/BSR20200124

Potential targets and molecular mechanism of miR-331-3p in hepatocellular carcinoma identified by weighted gene coexpression network analysis
Cited by: 6
Author(s): Qingjia Chi, Xinge Geng, Kang Xu, Chunli Wang, Han Zhao
Software Mentions: 1
Published: over 6 years ago

10.1042/BSR20203263

Exploration and validation of a novel prognostic signature based on comprehensive bioinformatics analysis in hepatocellular carcinoma
Cited by: 4
Author(s): Xiaofei Wang, Jie Qiao, Rongqi Wang
Software Mentions: 1
Published: almost 6 years ago

10.1042/BSR20191511

Weighted gene co-expression network analysis reveals specific modules and hub genes related to neuropathic pain in dorsal root ganglions
Cited by: 8
Author(s): Nan Cheng, Zheng Zhang, Yue Guo, Zhuolin Qiu, Jikun Du, Ziqing Hei, Xiang Li
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.19490

Using molecular functional networks to manifest connections between obesity and obesity-related diseases
Cited by: 6
Author(s): Jialiang Yang, Jing Qiu, Kejing Wang, Lijuan Zhu, Jingjing Fan, De-Yin Zheng, Xiaodi Meng, Jiasheng Yang, Lihong Peng, Yu Fu, Dahan Zhang, Shouneng Peng, Haiyun Huang, Yi Zhang
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.22181

Identification of differentially expressed genes, lncRNAs and miRNAs which are associated with tumor malignant phenotypes in hepatoblastoma patients
Cited by: 16
Author(s): Sida Liu, Fujing Xie, Xiaohong Xiang, Sinan Liu, Shunbin Dong, Kai Qu, Ting Lin
Software Mentions: 1
Published: almost 9 years ago

10.18632/aging.102971

Prognostic values of immune scores and immune microenvironment-related genes for hepatocellular carcinoma
Cited by: 22
Author(s): Penglei Ge, Shifang Li, Weiwei Wang, Chunbo Li, Yu-Bin Fu, Zhengkai Feng, Lin Li, Gong Zhang, Zhiqiang Gao, Xiaowei Dang, Yang Wu
Software Mentions: 1
Published: over 6 years ago

10.3390/biom10040549

Biochemical and Comparative Transcriptome Analyses Reveal Key Genes Involved in Major Metabolic Regulation Related to Colored Leaf Formation in Osmanthus fragrans ‘Yinbi Shuanghui’ during Development
Cited by: 13
Author(s): Xuan Chen, Xia Yang, Jun Xie, Wenjie Ding, Yuli Li, Yuanzheng Yue
Software Mentions: 1
Published: over 6 years ago

10.3390/biom8030070

Functional Annotation of Caenorhabditis elegans Genes by Analysis of Gene Co-Expression Networks
Cited by: 4
Author(s): Wei Liu, Ling Li, Yiruo He, Sen Cai, Wenjie Zhao, Hao Zheng, Yuexian Zhong, Shaobo Wang, Yang Zou, Zhenhua Xu, Yu Zhang, Wei Tu
Software Mentions: 1
Published: about 8 years ago

10.1155/2020/3876834

Identification of Genes Associated with the Metastasis of Pheochromocytoma/Paraganglioma Based on Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Qingde Su, Qinpei Ding, Zunni Zhang, Zheng Yang, Yuling Qiu, Xiaohong Li, Wuning Mo
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.103979

LINC01235-TWIST2 feedback loop facilitates epithelial–mesenchymal transition in gastric cancer by inhibiting THBS2
Cited by: 16
Author(s): Yongjun Tan, Xing Yao, Ban-Lai Ran, Chao Zhang, Siwei Pan, Wei An, Qingchuan Chen, Hui Xu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-85020-z

Systems-wide effects of short-term feed deprivation in obese mice
Cited by: 2
Author(s): Daniel S. Andersen, Henrik Munch Roager, Li Zhang, Janne Marie Moll, Henrik Lauritz Frandsen, Niels Banhos Danneskiold‐Samsøe, Axel Kornerup Hansen, Karsten Kristiansen, Tine Rask Licht, Susanne Brix
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/4169691

Identifying Tumorigenesis and Prognosis-Related Genes of Lung Adenocarcinoma: Based on Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Ming Yi, Tianye Li, Shuang Qin, Shengnan Yu, Qian Chu, An‐Ping Li, Kongming Wu
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/4921387

Investigation of Potential Genetic Biomarkers and Molecular Mechanism of Ulcerative Colitis Utilizing Bioinformatics Analysis
Cited by: 19
Author(s): Jiaqi Zhang, Xue Wang, Lin Xu, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/9957569

Application of Weighted Gene Coexpression Network Analysis to Identify Key Modules and Hub Genes in Systemic Juvenile Idiopathic Arthritis
Cited by: 5
Author(s): Mi Zhou, Ruru Guo, Yong Fei Wang, Wanling Yang, Rongxiu Li, Liangjing Lu
Software Mentions: 1
Published: about 5 years ago

10.1155/2015/316735

Gene Coexpression and Evolutionary Conservation Analysis of the Human Preimplantation Embryos
Cited by: 3
Author(s): Tiancheng Liu, Yuling Lin, Guohui Ding, Zhen Wang, Lei Liu, Hong Li, Yixue Li
Software Mentions: 1
Published: over 11 years ago

10.1155/2020/5478574

The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
Cited by: 18
Author(s): Hao Ding, Xiao-Xing Xiong, Guanlan Fan, Yuexiong Yi, Yurou Chen, Jingtao Wang, Wei Zhang
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/6782046

Gene Coexpression Network and Module Analysis across 52 Human Tissues
Cited by: 1
Author(s): Binsheng He, Junlin Xu, Yingxiang Tian, Bo Liao, Jidong Lang, Huixin Lin, Xiaofei Mo, Qingqing Lu, Geng Tian, Pingping Bing
Software Mentions: 1
Published: over 6 years ago

10.1155/2018/2914280

A Risk Stratification Model for Lung Cancer Based on Gene Coexpression Network and Deep Learning
Cited by: 13
Author(s): Hongyoon Choi, Kwon Joong Na
Software Mentions: 1
Published: over 8 years ago

10.1155/2019/9637479

Xiao-Qing-Long Tang Prevents Cardiomyocyte Hypertrophy, Fibrosis, and the Development of Heart Failure with Preserved Ejection Faction in Rats by Modulating the Composition of the Gut Microbiota
Cited by: 14
Author(s): Guocheng Zhou, Yue-Hua Jiang, Daifu Ma, Yongcheng Wang, Jinlong Yang, Jiye Chen, Chen-Yu Chi, Xiaowei Han, Zhaoyu Li, Xiao Li
Software Mentions: 1
Published: about 7 years ago

10.1155/2020/4264291

Coexpression Network Analysis Identifies a Novel Nine-RNA Signature to Improve Prognostic Prediction for Prostate Cancer Patients
Cited by: 7
Author(s): Jiarong Cai, Zheng Chen, Xuelian Chen, He Huang, Xiao Lin, Benchun Miao
Software Mentions: 1
Published: about 6 years ago

10.1155/2021/1093702

Microarray Data Mining and Preliminary Bioinformatics Analysis of Hepatitis D Virus-Associated Hepatocellular Carcinoma
Cited by: 6
Author(s): Zhe Yu, Xuemei Ma, Wei Zhang, Xiujuan Chang, Lihui An, Ming Niu, Yan Chen, Chao Sun, Yongping Yang
Software Mentions: 1
Published: over 5 years ago

10.1155/2016/3962761

Differentially Coexpressed Disease Gene Identification Based on Gene Coexpression Network
Cited by: 2
Author(s): Xue Jiang, Han Zhang, Xiongwen Quan
Software Mentions: 1
Published: over 10 years ago

10.1186/s12872-016-0217-3

Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease
Cited by: 66
Author(s): Jing Liu, Ling Jing, Xilin Tu
Software Mentions: 1
Published: over 10 years ago

10.18632/aging.102653

Network analysis of human muscle adaptation to aging and contraction
Cited by: 14
Author(s): Craig R. G. Willis, Ryan M. Ames, Colleen S. Deane, Bethan E. Phillips, Catherine Boereboom, Haitham Abdulla, Syed S I Bukhari, Jonathan N. Lund, John P. Williams, Daniel J. Wilkinson, Kenneth Smith, Fawzi Kadi, Nathaniel J. Szewczyk, Philip J. Atherton, Timothy Etheridge
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-90082-0

Revealing the developmental dynamics in male strobilus transcriptome of Gnetum luofuense using nanopore sequencing technology
Cited by: 5
Author(s): Chen Hou, Yuxin Tian, Yingli Wang, Huiming Lian, Dongcheng Liang, Shengqing Shi, Nan Deng, Boxiang He
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-89747-7

The novel immune-related genes predict the prognosis of patients with hepatocellular carcinoma
Cited by: 3
Author(s): Lunxu Li, Shilin Xia, Xueying Shi, Chen Xu, Dong Shang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-90192-9

Estimates of gene ensemble noise highlight critical pathways and predict disease severity in H1N1, COVID-19 and mortality in sepsis patients
Cited by: 7
Author(s): Tristan V de Jong, Victor Guryev, Yuri M. Moshkin
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/8872577

Identification of a β-Arrestin 2 Mutation Related to Autism by Whole-Exome Sequencing
Cited by: 5
Author(s): Yunfei Tang, Yamei Liu, Lei Tong, Shini Feng, Dongshu Du, Fuxue Chen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12872-021-01973-z

Comparative transcriptome analysis of transcripts of uncertain coding potential in septic myocardial depression
Cited by: 1
Author(s): Tie-Ning Zhang, Ri Wen, Ni Yang, Chunfeng Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12938-019-0625-6

Potential biomarkers of acute myocardial infarction based on weighted gene co-expression network analysis
Cited by: 21
Author(s): Zhihua Liu, Chenguang Ma, Junhua Gu, Ming Yu
Software Mentions: 1
Published: over 7 years ago

10.3390/biology10020127

Comprehensive Analysis and Expression Profiling of PIN, AUX/LAX, and ABCB Auxin Transporter Gene Families in Solanum tuberosum under Phytohormone Stimuli and Abiotic Stresses
Cited by: 11
Author(s): Chan Yang, Dongdong Wang, Chao Zhang, Minghui Ye, Nana Kong, Hongwei Ma, Qin Chen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-93250-4

A comprehensive transcriptomic landscape of cholangiocarcinoma based on bioinformatics analysis from large cohort of patients
Cited by: 4
Author(s): Hongguang Li, Lingxin Qu, Haibin Zhang, Jun Li, Xiaolu Zhang
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.102422

Selected by gene co-expression network and molecular docking analyses, ENMD-2076 is highly effective in glioblastoma-bearing rats
Cited by: 16
Author(s): Sheng Zhong, Yang Bai, Bo Wu, Junliang Ge, Shanshan Jiang, Weihang Li, Xinhui Wang, Junan Ren, Haidong Xu, Yong Chen
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-94074-y

Circular noncoding RNA hsa_circ_0005986 as a prognostic biomarker for hepatocellular carcinoma
Cited by: 5
Author(s): Gyeonghwa Kim, Ja Ryung Han, Soo Young Park, Won Young Tak, Young-Oh Kweon, Yu Rim Lee, Young Seok Han, Jung Gil Park, Min Kyu Kang, Hye Won Lee, Won Kee Lee, Deokhoon Kim, Se Young Jang, Keun Hur
Software Mentions: 1
Published: about 5 years ago

10.3390/biology8040093

Transcriptome Analysis of Wheat Roots Reveals a Differential Regulation of Stress Responses Related to Arbuscular Mycorrhizal Fungi and Soil Disturbance
Cited by: 19
Author(s): Catarina Campos, Tânia Nobre, M. J. Goss, J. A. Brandão Faria, Pedro Barrulas, Mário de Carvalho
Software Mentions: 1
Published: over 6 years ago

10.3390/biology10040310

Insight into Liver lncRNA and mRNA Profiling at Four Developmental Stages in Ningxiang Pig
Cited by: 5
Author(s): Yan Gong, Yuebo Zhang, Biao Li, Yu Xiao, Qinghua Zeng, Kang Xu, Yehui Duan, Jun He, Haiming Ma
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-020-01109-y

Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain
Cited by: 16
Author(s): Joanna J. Bury, Annabelle Chambers, Paul R. Heath, Paul G. Ince, Pamela J. Shaw, Fiona E. Matthews, Carol Brayne, Julie E. Simpson, Stephen B. Wharton
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-96459-5

Target identification of hepatic fibrosis using Pien Tze Huang based on mRNA and lncRNA
Cited by: 4
Author(s): Jiaquan Zhu, Di Zhang, Ting Wang, Zhiliang Chen, Luan Chen, Hao Wu, Hui Cong, Jing Ping Sun, Na Zhang, Muyun Wei, Hong Fu, Shengying Qin
Software Mentions: 1
Published: about 5 years ago

10.3390/biology9080201

Unravelling the Role of miR-20b-5p, CCNB1, HMGA2 and E2F7 in Development and Progression of Non-Small Cell Lung Cancer (NSCLC)
Cited by: 16
Author(s): Shweta Arora, Prithvi Singh, Arshad Husain Rahmani, Saleh A. Almatroodi, Ravins Dohare, Mansoor Ali Syed
Software Mentions: 1
Published: about 6 years ago

10.1093/bioinformatics/btv598

Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data
Cited by: 1
Author(s): Juan J. Díaz-Montaña, Owen J. L. Rackham, Norberto Díaz–Díaz, Enrico Petretto
Software Mentions: 1
Published: almost 11 years ago

10.1155/2021/9987990

Identification of Prognostic Genes in Neuroblastoma in Children by Weighted Gene Coexpression Network Analysis
Cited by: 0
Author(s): Jun Yang, Ying Zhang, Jianyi Zhou, Shaohua Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s13040-016-0105-5

Mango: combining and analyzing heterogeneous biological networks
Cited by: 2
Author(s): Jennifer Chang, Hyejin Cho, Hui‐Hsien Chou
Software Mentions: 1
Published: about 10 years ago

10.1186/1752-0509-5-43

Gene networks associated with conditional fear in mice identified using a systems genetics approach
Cited by: 74
Author(s): Christopher C. Park, Greg D. Gale, Simone de Jong, Anatole Ghazalpour, Brian J. Bennett, Charles R. Farber, Peter Langfelder, Andy Lin, Khan Ah, Eleazar Eskin, Steve Horvath, Aldons J. Lusis, Roel A. Ophoff, Desmond J. Smith
Software Mentions: 1
Published: over 15 years ago

10.1038/s41598-021-97616-6

Analysis of weighted gene co-expression network of triterpenoid-related transcriptome characteristics from different strains of Wolfiporia cocos
Cited by: 0
Author(s): Zeng GuiPing, Li Zhong, Zhi Zhao
Software Mentions: 1
Published: almost 5 years ago

10.1186/1752-0509-8-S2-S5

Weighted Interaction SNP Hub (WISH) network method for building genetic networks for complex diseases and traits using whole genome genotype data
Cited by: 27
Author(s): Lisette J. A. Kogelman, Haja N. Kadarmideen
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-021-98381-2

Glycolysis-related gene expression profiling serves as a novel prognosis risk predictor for human hepatocellular carcinoma
Cited by: 11
Author(s): Lingyu Zhang, Li Yu, Yibei Dai, Danhua Wang, Xuchu Wang, Ying Cao, Weiwei Liu, Zhihua Tao
Software Mentions: 1
Published: almost 5 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479