Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: WGCNA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/WGCNA

Weighted Correlation Network Analysis
52 versions
Latest release: almost 2 years ago
20 dependent packages
9,120 downloads last month

Papers Mentioning WGCNA 3,479

10.3390/antiox10091385
Characterization of Heat Shock Protein 60 as an Interacting Partner of Superoxide Dismutase 2 in the Silkworm, Bombyx mori, and Its Response to the Molting Hormone, 20-Hydroxyecdysone
Cited by: 2
Author(s): Yosui Nojima
Software Mentions: 1
Published: about 3 years ago
10.3390/antibiotics10070861
Crosstalks between NOD1 and Histone H2A Contribute to Host Defense against Streptococcus agalactiae Infection in Zebrafish
Cited by: 2
Author(s): Xiaoyu Wu, Fan Xiong, Hong Fang, Jie Zhang, Ming Chang
Software Mentions: 1
Published: over 3 years ago
10.1093/dnares/dsaa006
Integrating transcriptome and metabolome reveals molecular networks involved in genetic and environmental variation in tobacco
Cited by: 20
Author(s): Pingping Li, Jianxun Luo, Qingyuan Zheng, Qiansi Chen, Zheyu Niu, Shengchun Xu, Yalong Xu, Lifeng Jin, Guoyun Xu, Xin Lü, Guowang Xu, Gangjun Wang, Jianfeng Shao, Haiming Xu, Peijian Cao, Huina Zhou, Xusheng Wang
Software Mentions: 1
Published: over 4 years ago
10.1097/MD.0000000000009738
Identification of gene expression models for laryngeal squamous cell carcinoma using co-expression network analysis
Cited by: 9
Author(s): Chao Yang, Shufang Wang, Xiangli Yang, Lin Wang, Lin Niu, Jixiang Liu
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12934-020-01349-6
Repeated fed-batch strategy and metabolomic analysis to achieve high docosahexaenoic acid productivity in Crypthecodinium cohnii
Cited by: 9
Author(s): Liangsen Liu, Fangzhong Wang, Guangsheng Pei, Jinyu Cui, Jinjin Diao, Mingming Lv, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 4 years ago
10.1155/2019/9637479
Xiao-Qing-Long Tang Prevents Cardiomyocyte Hypertrophy, Fibrosis, and the Development of Heart Failure with Preserved Ejection Faction in Rats by Modulating the Composition of the Gut Microbiota
Cited by: 14
Author(s): Guocheng Zhou, Yue-Hua Jiang, Daifu Ma, Yongcheng Wang, Jinlong Yang, Jiye Chen, Chen-Yu Chi, Xiaowei Han, Zhaoyu Li, Xiao Li
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-019-5777-z
Differential expression of innate and adaptive immune genes in the survivors of three gibel carp gynogenetic clones after herpesvirus challenge
Cited by: 17
Author(s): Wei-Jia Lu, Fan-Xiang Gao, Yan Wang, Qi-Ya Zhang, Zhi Li, Xiaojuan Zhang, Li Zhou, Jian‐Fang Gui
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2164-11-161
Functional annotation of novel lineage-specific genes using co-expression and promoter analysis
Cited by: 8
Author(s): Charu G. Kumar, Robin E. Everts, Juan J. Loor, Harris A. Lewin
Software Mentions: 1
Published: over 14 years ago
10.1093/dnares/dsz016
Phased genome sequence of an interspecific hybrid flowering cherry, ‘Somei-Yoshino’ (Cerasus × yedoensis)
Cited by: 44
Author(s): Kenta Shirasawa, Tomoya Esumi, Hideki Hirakawa, Hideyuki Tanaka, Akihiro Itai, Andrea Ghelfi, Hideki Nagasaki, Sachiko Isobe
Software Mentions: 1
Published: over 5 years ago
10.1155/2018/2914280
A Risk Stratification Model for Lung Cancer Based on Gene Coexpression Network and Deep Learning
Cited by: 13
Author(s): Hongyoon Choi, Kwon Joong Na
Software Mentions: 1
Published: almost 7 years ago
10.1093/dnares/dsu024
Associative Transcriptomics Study Dissects the Genetic Architecture of Seed Glucosinolate Content in Brassica napus
Cited by: 60
Author(s): Guangyuan Lu, Andrea L. Harper, Martin Trick, Colin Morgan, F C Fråser, Carmel M. O’Neill, Ian Bancroft
Software Mentions: 1
Published: over 10 years ago
10.1002/pld3.70
A sorghum <scp>NAC</scp> gene is associated with variation in biomass properties and yield potential
Cited by: 32
Author(s): Jingnu Xia, Yunjun Zhao, Payne S. Burks, Markus Pauly, Patrick J. Brown
Software Mentions: 1
Published: over 6 years ago
10.1007/s11897-021-00504-3
Single-Cell RNA Sequencing of the Adult Mammalian Heart—State-of-the-Art and Future Perspectives
Cited by: 9
Author(s): Monika M Gladka
Software Mentions: 1
Published: over 3 years ago
10.1111/jcmm.16703
Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
Cited by: 12
Author(s): Jingxia Lin, Xuefei Li, Fangfei Zhang, Lei Zhu, Yongfeng Chen
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0224497
Characterization of the placental transcriptome through mid to late gestation in the mare
Cited by: 13
Author(s): Shavahn C. Loux, Pouya Dini, Hesham A. Ali, Theodore S. Kalbfleisch, Barry A. Ball
Software Mentions: 1
Published: about 5 years ago
10.3390/ani11061745
Gene Expression Profile and Co-Expression Network of Pearl Gentian Grouper under Cold Stress by Integrating Illumina and PacBio Sequences
Cited by: 10
Author(s): Ben‐Ben Miao, Su‐Fang Niu, Renxie Wu, Zhen‐Bang Liang, Tang Baogui, Yun Zhai, Xue-Qi Xu
Software Mentions: 1
Published: over 3 years ago
10.3390/ani11020314
Lactation Associated Genes Revealed in Holstein Dairy Cows by Weighted Gene Co-Expression Network Analysis (WGCNA)
Cited by: 8
Author(s): Yongliang Fan, Abdelaziz Adam Idriss Arbab, Huimin Zhang, Yi Yang, Mudasir Nazar, Ziyin Han, Zhangping Yang
Software Mentions: 1
Published: almost 4 years ago
10.1155/2020/6782046
Gene Coexpression Network and Module Analysis across 52 Human Tissues
Cited by: 1
Author(s): Binsheng He, Junlin Xu, Yingxiang Tian, Bo Liao, Jidong Lang, Huixin Lin, Xiaofei Mo, Qingqing Lu, Geng Tian, Pingping Bing
Software Mentions: 1
Published: over 4 years ago
10.1002/jcla.23680
Constructing a 10‐core genes panel for diagnosis of pediatric sepsis
Cited by: 4
Author(s): Xiaojie Zhou, Yumin Wang, Jie Chen, Jingye Pan
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0193334
Chemokine expression in the early response to injury in human airway epithelial cells
Cited by: 7
Author(s): Bingqing Xie, Bharathi Laxman, Somaye Hashemifar, Randi Stern, T. Conrad Gilliam, Natalia Maltsev, Steven R. White
Software Mentions: 1
Published: over 6 years ago
10.3390/jcm8101719
Reformulating Pro-Oxidant Microglia in Neurodegeneration
Cited by: 45
Author(s): Juan García-Revilla, Isabel María Alonso-Bellido, Miguel Ángel Burguillos, Antonio J. Herrera, Ana M. Espinosa-Oliva, Rocío Ruiz, Luis Cruz-Hernández, Irene García-Domínguez, María Angustias Roca-Ceballos, Marti Santiago, José A. Rodríguez‐Gómez, Manuel Sarmiento Soto, Rocío M. de Pablos, José L. Venero
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0073413
A Network-Based Method to Assess the Statistical Significance of Mild Co-Regulation Effects
Cited by: 18
Author(s): Emőke-Ágnes Horvát, Jitaovid Da Zhang, Stefan Uhlmann, Özgür Şahin, Katharina Anna Zweig
Software Mentions: 1
Published: about 11 years ago
10.1155/2020/5478574
The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
Cited by: 18
Author(s): Hao Ding, Xiao-Xing Xiong, Guanlan Fan, Yuexiong Yi, Yurou Chen, Jingtao Wang, Wei Zhang
Software Mentions: 1
Published: over 4 years ago
10.2174/138920209788921029
One Decade Later: What has Gene Expression Profiling Told us About Neuronal Cell Types, Brain Function and Disease?
Cited by: 3
Author(s): Elizabeth Díaz
Software Mentions: 1
Published: over 15 years ago
10.1186/s12935-021-01880-5
Silencing SHMT2 inhibits the progression of tongue squamous cell carcinoma through cell cycle regulation
Cited by: 12
Author(s): Yan Liao, Fang Wang, Yadong Zhang, Hao Cai, Song Fan, Jinsong Hou
Software Mentions: 1
Published: over 3 years ago
10.18632/oncotarget.14739
A methodological study of genome-wide DNA methylation analyses using matched archival formalin-fixed paraffin embedded and fresh frozen breast tumors
Cited by: 8
Author(s): Allyson C. Espinal, Dan Wang, Li Yan, Song Liu, Li Tang, Qiang Hu, Carl Morrison, Christine B. Ambrosone, Michael J. Higgins, Lara E. Sucheston‐Campbell
Software Mentions: 1
Published: almost 8 years ago
10.1111/pbi.13325
DcMYB113, a root‐specific R2R3‐MYB, conditions anthocyanin biosynthesis and modification in carrot
Cited by: 74
Author(s): Zhihong Xu, Qingqing Yang, Kai Feng, Xin Yu, Ai‐Sheng Xiong
Software Mentions: 1
Published: almost 5 years ago
10.3390/biology9080201
Unravelling the Role of miR-20b-5p, CCNB1, HMGA2 and E2F7 in Development and Progression of Non-Small Cell Lung Cancer (NSCLC)
Cited by: 16
Author(s): Shweta Arora, Prithvi Singh, Arshad Husain Rahmani, Saleh A. Almatroodi, Ravins Dohare, Mansoor Ali Syed
Software Mentions: 1
Published: over 4 years ago
10.1177/1759091419854627
Identification of the Molecular Events Involved in the Development of Prefrontal Cortex Through the Analysis of RNA-Seq Data From BrainSpan
Cited by: 2
Author(s): Hadi Najafi, Mohadeseh Naseri, Javad Zahiri, Mehdi Totonchi, Shahana Majid
Software Mentions: 1
Published: almost 6 years ago
10.1007/s12975-020-00869-y
Molecular Correlates of Hemorrhage and Edema Volumes Following Human Intracerebral Hemorrhage Implicate Inflammation, Autophagy, mRNA Splicing, and T Cell Receptor Signaling
Cited by: 21
Author(s): Marc Durocher, Bodie Knepp, Alan Yee, Glen C. Jickling, Fernando Rodríguez Rodríguez, Kwan Ng, Xinhua Zhan, Farah Hamade, Eva Ferino, Hajar Amini, Paulina Carmona-Mora, Heather Hull, Bradley P. Ander, Frank R. Sharp, Boryana Stamova
Software Mentions: 1
Published: about 4 years ago
10.1007/s12170-012-0280-y
Systems Biology Approaches and Applications in Obesity, Diabetes, and Cardiovascular Diseases
Cited by: 47
Author(s): Qingying Meng, Ville-Petteri Mäkinen, Helen Luk, Xia Yang
Software Mentions: 1
Published: about 12 years ago
10.18632/oncotarget.17023
Prognosis of stage III colorectal carcinomas with FOLFOX adjuvant chemotherapy can be predicted by molecular subtype
Cited by: 33
Author(s): Yu-Jin Kwon, Min Hee Park, Mi Jang, SeongJu Yun, Won Kyu Kim, Sora Kim, Soonmyung Paik, Hyun Jung Lee, Suck Joon Hong, Tae Il Kim, Byung-Soh Min, Hoguen Kim
Software Mentions: 1
Published: over 7 years ago
10.1155/2021/5533483
Altered Gene Expression in the Testis of Infertile Patients with Nonobstructive Azoospermia
Cited by: 3
Author(s): Zhiqiang Wang, Zhongjun Ding, Yan Guan, Chunhui Liu, Linjun Wang, Wen-Sheng Shan, Jie Yang
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-018-4999-9
Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)
Cited by: 57
Author(s): Yuling Tai, Liu Chun, Shijie Yu, Hua Yang, Jun Sun, Chunxiao Guo, Bei Huang, Zhaoye Liu, Yuan Yang, Enhua Xia, Chaoling Wei, Xiaochun Wan
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pntd.0005123
Blood Transcriptional Profiling Reveals Immunological Signatures of Distinct States of Infection of Humans with Leishmania infantum
Cited by: 46
Author(s): Luiz Gustavo Gardinassi, Gustavo García, Carlos Henrique Nery Costa, Vladimir Costa Silva, Isabel Kinney Ferreira de Miranda Santos
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pmed.1003451
Associations among circulating sphingolipids, β-cell function, and risk of developing type 2 diabetes: A population-based cohort study in China
Cited by: 47
Author(s): Huan Yun, Liang Sun, Qingqing Wu, Geng Zong, Qibin Qi, Huaixing Li, Zheng He, Rong Zeng, Liming Liang, Xu Lin
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-019-6025-2
Transcriptome-wide association study and eQTL analysis to assess the genetic basis of bulb-yield traits in garlic (Allium sativum)
Cited by: 7
Author(s): Siyuan Zhu, Xiaojun Chen, Xia Liu, Jian Zhao, Touming Liu
Software Mentions: 1
Published: over 5 years ago
10.1093/jxb/eraa206
Low temperature modulates natural peel degreening in lemon fruit independently of endogenous ethylene
Cited by: 24
Author(s): Oscar W. Mitalo, Takumi Otsuki, Rui Okada, Saeka Obitsu, Kanae Masuda, Yuko Hojo, Takakazu Matsuura, Izumi C. Mori, Daigo Abe, William Olubero Asiche, Takashi Akagi, Yasutaka Kubo, Koichiro Ushijima
Software Mentions: 1
Published: over 4 years ago
10.1155/2021/5584684
RAMRSGL: A Robust Adaptive Multinomial Regression Model for Multicancer Classification
Cited by: 0
Author(s): Lei Wang, Juntao Li, Juanfang Liu, Mingming Chang
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.ppat.1003196
Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross
Cited by: 179
Author(s): Martin T. Ferris, David L. Aylor, Daniel Bottomly, Alan C. Whitmore, Lauri Aicher, Timothy A. Bell, Birgit Bradel-Tretheway, Janine T. Bryan, Ryan J. Buus, Lisa E. Gralinski, Bart L. Haagmans, Leonard McMillan, Darla R. Miller, Elizabeth Rosenzweig, William Valdar, Jeremy Wang, Gary A. Churchill, David W. Threadgill, Shannon K. McWeeney, Michael G. Katze, Fernando Pardo-Manuel de Villena, Ralph S. Baric, Mark T. Heise
Software Mentions: 1
Published: over 11 years ago
10.1186/s12864-015-1398-3
Hsf and Hsp gene families in Populus: genome-wide identification, organization and correlated expression during development and in stress responses
Cited by: 79
Author(s): Zening Jin, Bobin Liu, Jianbo Li, Li Zhang, Yan Wang, Huanquan Zheng, Mengzhu Lu, Jun Chen
Software Mentions: 1
Published: over 9 years ago
10.1161/HYPERTENSIONAHA.118.12409
<i>Camk2n1</i> Is a Negative Regulator of Blood Pressure, Left Ventricular Mass, Insulin Sensitivity, and Promotes Adiposity
Cited by: 13
Author(s): Neza Alfazema, Marjorie Barrier, Sophie Marion de Procé, Robert Menzies, Roderick Nicholas Carter, Kevin Stewart, Ana García Díaz, Ben Moyon, Zoë Webster, Christopher Bellamy, Mark J. Arends, Roland H Stimson, Nicholas M. Morton, Timothy J. Aitman, Philip Coan
Software Mentions: 1
Published: about 5 years ago
10.18632/oncotarget.15031
Comprehensive analysis of PD-L1 expression in glioblastoma multiforme
Cited by: 73
Author(s): Dieter Henrik Heiland, Gerrit Haaker, Daniel Delev, Bianca Mercas, Waseem Masalha, Sabrina Heynckes, Annette Gäbelein, Dietmar Pfeifer, Maria Stella Carro, Astrid Weyerbrock, Marco Prinz, Oliver Schnell
Software Mentions: 1
Published: almost 8 years ago
10.1155/2015/316735
Gene Coexpression and Evolutionary Conservation Analysis of the Human Preimplantation Embryos
Cited by: 3
Author(s): Tiancheng Liu, Yuling Lin, Guohui Ding, Zhen Wang, Lei Liu, Hong Li, Yixue Li
Software Mentions: 1
Published: almost 10 years ago
10.1038/s42003-021-02421-6
Metabolomic signatures associated with depression and predictors of antidepressant response in humans: A CAN-BIND-1 report
Cited by: 11
Author(s): Giorgia Caspani, Gustavo Turecki, Raymond W. Lam, Roumen Milev, Benício N. Frey, Glenda MacQueen, Daniel J. Müller, Susan Rotzinger, Sidney H. Kennedy, Jane A. Foster, Jonathan R. Swann
Software Mentions: 1
Published: over 3 years ago
10.1155/2021/9957569
Application of Weighted Gene Coexpression Network Analysis to Identify Key Modules and Hub Genes in Systemic Juvenile Idiopathic Arthritis
Cited by: 5
Author(s): Mi Zhou, Ruru Guo, Yong Fei Wang, Wanling Yang, Rongxiu Li, Liangjing Lu
Software Mentions: 1
Published: over 3 years ago
10.1155/2020/4921387
Investigation of Potential Genetic Biomarkers and Molecular Mechanism of Ulcerative Colitis Utilizing Bioinformatics Analysis
Cited by: 19
Author(s): Jiaqi Zhang, Xue Wang, Lin Xu, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 4 years ago
10.1038/s42003-018-0271-8
Regulation of RNA editing by RNA-binding proteins in human cells
Cited by: 89
Author(s): Giovanni Quinones-Valdez, Stephen Tran, Hyun-Ik Jun, Jae Hoon Bahn, Ei-Wen Yang, Lijun Zhan, Anneke Brümmer, Xintao Wei, Eric L. Van Nostrand, Gabriel A. Pratt, G Yeo, Brenton R. Graveley, Xinshu Xiao
Software Mentions: 1
Published: almost 6 years ago
10.1186/1710-1492-10-S2-A58
Transcriptional networks in whole blood of asthmatics
Cited by: 1
Author(s): Young Woong Kim, Amrit Singh, Casey P. Shannon, Gail M. Gauvreau, Scott J. Tebbutt
Software Mentions: 1
Published: almost 10 years ago
10.1111/acel.13414
Epigenetic clock and methylation studies in elephants
Cited by: 31
Author(s): Natalia A. Prado, Janine L. Brown, Joseph A. Zoller, Amin Haghani, Mingjia Yao, Lora Bagryanova, Michael G. Campana, Jesús E. Maldonado, Kenneth Raj, Dennis L. Schmitt, Todd R. Robeck, Steve Horvath
Software Mentions: 1
Published: over 3 years ago
10.1186/s12920-020-0702-5
Gene co-expression networks are associated with obesity-related traits in kidney transplant recipients
Cited by: 4
Author(s): Rosario B. Jaime-Lara, Abhrarup Roy, Yupeng Wang, Ansley Grimes Stanfill, Ann K. Cashion, Paule V. Joseph
Software Mentions: 1
Published: over 4 years ago
10.1155/2020/4169691
Identifying Tumorigenesis and Prognosis-Related Genes of Lung Adenocarcinoma: Based on Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Ming Yi, Tianye Li, Shuang Qin, Shengnan Yu, Qian Chu, An‐Ping Li, Kongming Wu
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pgen.1002367
Integrating Genome-Wide Genetic Variations and Monocyte Expression Data Reveals Trans-Regulated Gene Modules in Humans
Cited by: 122
Author(s): Maxime Rotival, Tanja Zeller, Philipp S. Wild, Seraya Maouche, Silke Szymczak, Arne Schillert, Raphaële Castagné, Arne Deiseroth, Carole Proust, Jessy Brocheton, Tiphaine Godefroy, Claire Perret, Marine Germain, Medea Eleftheriadis, Christoph Sinning, Renate B. Schnabel, Edith Lubos, Karl J. Lackner, Heidi Rossmann, Thomas Münzel, Augusto Rendon, Cardiogenics Consortium, Jeanette Erdmann, Panos Deloukas, Christian Hengstenberg, Patrick Diemert, Gilles Montalescot, Willem H. Ouwehand, Nilesh J. Samani, Heribert Schunkert, David‐Alexandre Trégouët, Andreas Ziegler, Alison H. Goodall, François Cambien, Laurence Tiret, Stefan Blankenberg
Software Mentions: 1
Published: almost 13 years ago
10.1155/2020/3876834
Identification of Genes Associated with the Metastasis of Pheochromocytoma/Paraganglioma Based on Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Qingde Su, Qinpei Ding, Zunni Zhang, Zheng Yang, Yuling Qiu, Xiaohong Li, Wuning Mo
Software Mentions: 1
Published: almost 5 years ago
10.1007/s13238-016-0247-8
Coupled electrophysiological recording and single cell transcriptome analyses revealed molecular mechanisms underlying neuronal maturation
Cited by: 34
Author(s): Xiaoying Chen, Kunshan Zhang, Libing Zhou, Xinpei Gao, Junbang Wang, Yinan Yao, Fei He, Yuan Luo, Yongchun Yu, Siguang Li, Liming Cheng, Yi Sun
Software Mentions: 1
Published: almost 9 years ago
10.1038/tp.2015.118
Increased abundance of translation machinery in stem cell–derived neural progenitor cells from four schizophrenia patients
Cited by: 46
Author(s): Aaron Topol, James English, Erin Flaherty, Prashanth Rajarajan, Brigham J. Hartley, Siddharth Gupta, Fiona Desland, Shijia Zhu, Troy Goff, Lawrence Friedman, Judith L. Rapoport, Dan P. Felsenfeld, Gerard Cagney, Alan Mackay‐Sim, Jeffrey N. Savas, Bruce J. Aronow, Gang Fang, B Zhang, David Cotter, Kristen J. Brennand
Software Mentions: 1
Published: about 9 years ago
10.1007/s13238-018-0559-y
Unbiased transcriptomic analyses reveal distinct effects of immune deficiency in CNS function with and without injury
Cited by: 9
Author(s): Dandan Luo, Weihong Ge, Xiao Hu, Chen Li, Chia Ming Lee, Libing Zhou, Zhourui Wu, Juehua Yu, Shaochong Lin, Jing Yu, Wei Xu, Lei Chen, Chong Zhang, Kun Jiang, Xuding Zhu, Haotian Li, Xinpei Gao, Yanan Geng, Bo Jing, Zhen Wang, Changhong Zheng, Rongrong Zhu, Yan Qiao, Qing Lin, Keqiang Ye, Yi Sun, Liming Cheng
Software Mentions: 1
Published: over 6 years ago
10.1111/acel.13349
Epigenetic clock and methylation study of oocytes from a bovine model of reproductive aging
Cited by: 19
Author(s): Paweł Kordowitzki, Amin Haghani, Joseph A. Zoller, Caesar Z. Li, Ken Raj, Matthew L Spangler, Steve Horvath
Software Mentions: 1
Published: over 3 years ago
10.1093/hmg/ddaa132
Serum biomarkers associated with baseline clinical severity in young steroid-naïve Duchenne muscular dystrophy boys
Cited by: 14
Author(s): Utkarsh J. Dang, Michael Ziemba, Paula R. Clemens, Yetrib Hathout, Laurie S. Conklin, Cinrg Vamorolone, Investigators, Eric P. Hoffman
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pgen.1001113
An Immune Response Network Associated with Blood Lipid Levels
Cited by: 122
Author(s): Michael Inouye, Kaisa Silander, Eija Hämäläinen, Veikko Salomaa, Kennet Harald, Pekka Jousilahti, Satu Männistö, Johan G. Eriksson, Janna Saarela, Samuli Ripatti, Markus Perola, Gert‐Jan B. van Ommen, Marja‐Riitta Taskinen, Aarno Palotie, Emmanouil T. Dermitzakis, Leena Peltonen
Software Mentions: 1
Published: about 14 years ago
10.1136/rmdopen-2015-000183
Leucocyte subset-specific type 1 interferon signatures in SLE and other immune-mediated diseases
Cited by: 25
Author(s): Shaun Flint, Vojislav Jovanović, Boon Wee Teo, Anselm Mak, Julian Thumboo, Eoín McKinney, James C. Lee, Paul A. MacAry, David M. Kemeny, David Jayne, Kok Yong Fong, Paul Lyons, Kenneth G. C. Smith
Software Mentions: 1
Published: over 8 years ago
10.1098/rsos.172062
Transcriptional analyses provide new insight into the late-stage immune response of a diseased Caribbean coral
Cited by: 28
Author(s): Lauren E. Fuess, Whitney T. Mann, Lea R. Jinks, Vanessa Brinkhuis, Laura D. Mydlarz
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pgen.1004006
Multi-tissue Analysis of Co-expression Networks by Higher-Order Generalized Singular Value Decomposition Identifies Functionally Coherent Transcriptional Modules
Cited by: 53
Author(s): Xiaolin Xiao, Aida Moreno‐Moral, Maxime Rotival, Leonardo Bottolo, Enrico Petretto
Software Mentions: 1
Published: almost 11 years ago
10.1007/s11306-020-01733-8
Evaluation of the use of untargeted metabolomics in the safety assessment of genetically modified crops
Cited by: 17
Author(s): Mohamed Bedair, Kevin C. Glenn
Software Mentions: 1
Published: about 4 years ago
10.1016/j.redox.2021.101933
Network analysis of nitrate-sensitive oral microbiome reveals interactions with cognitive function and cardiovascular health across dietary interventions
Cited by: 20
Author(s): Anni Vanhatalo, Joanna E. L’Heureux, James Kelly, Jamie R. Blackwell, Lee J. Wylie, Jonathan Fulford, Paul G. Winyard, David Wynne Williams, Mark van der Giezen, Andrew M. Jones
Software Mentions: 1
Published: over 3 years ago
10.1186/s12958-021-00785-2
Abnormally increased DNA methylation in chorionic tissue might play an important role in development of ectopic pregnancy
Cited by: 1
Author(s): Chen Wen, Yang Liu, Ruiqing Zhang, Yang Yao, Shuangdi Li, Jiarong Zhang
Software Mentions: 1
Published: over 3 years ago
10.1007/s00425-020-03544-6
Systematic identification and characterization of circular RNAs involved in flag leaf senescence of rice
Cited by: 15
Author(s): Xiaoping Huang, Hongyu Zhang, Rong Guo, Qiang Wang, Xuanzhi Liu, Weigang Kuang, Haiyan Song, Jiang-Lin Liao, Yongji Huang, Zhaohai Wang
Software Mentions: 1
Published: almost 4 years ago
10.1038/s42003-021-02536-w
The genome of the thin-necked bladder worm Taenia hydatigena reveals evolutionary strategies for helminth survival
Cited by: 2
Author(s): Shuai Wang, Xiaolin Liu, Zhongli Liu, Yugui Wang, Aijiang Guo, Wanlong Huang, Qianhao Wang, Shaohua Zhang, Guangxi Zhu, Xin Luo, Xing‐Quan Zhu, Xuepeng Cai
Software Mentions: 1
Published: about 3 years ago
10.1186/s12931-017-0558-1
Network-based analysis reveals novel gene signatures in peripheral blood of patients with chronic obstructive pulmonary disease
Cited by: 31
Author(s): Ma’en Obeidat, Yunlong Nie, Virginia Chen, Casey P. Shannon, Anand Kumar Andiappan, Bernett Lee, Olaf Rötzschke, Peter J. Castaldi, Craig P. Hersh, Nick Fishbane, Raymond T. Ng, Bruce M. McManus, Bruce E. Miller, Stephen I. Rennard, Peter D. Paré, Don D. Sin
Software Mentions: 1
Published: over 7 years ago
10.1186/s12931-018-0965-y
Do sputum or circulating blood samples reflect the pulmonary transcriptomic differences of COPD patients? A multi-tissue transcriptomic network META-analysis
Cited by: 8
Author(s): Rosa Faner, Jarrett Morrow, Sandra Casas-Recasens, Suzanne M. Cloonan, Guillaume Noell, Alejandra López-Giraldo, Ruth Tal‐Singer, Bruce E. Miller, Edwin K. Silverman, Àlvar Agustí, Craig P. Hersh
Software Mentions: 1
Published: almost 6 years ago
10.1002/ctm2.225
A prognostic stemness biomarker CCDC80 reveals acquired drug resistance and immune infiltration in colorectal cancer
Cited by: 12
Author(s): Weida Wang, G.X. Wu, Kunhao Bai, Lingling Shu, Peidong Chi, Siyuan He, Xin Huang, Qian-Yi Zhang, Li Liang, Dawei Wang, Yong Dai
Software Mentions: 1
Published: about 4 years ago
10.1186/s12931-019-1105-z
Multi-level immune response network in mild-moderate Chronic Obstructive Pulmonary Disease (COPD)
Cited by: 33
Author(s): Tamara Cruz, Alejandra López-Giraldo, Guillaume Noell, Sandra Casas-Recasens, Tamara García, Laureano Molins, Manel Juan, Marco A. Fernández, Àlvar Agustí, Rosa Faner
Software Mentions: 1
Published: over 5 years ago
10.18632/oncotarget.17785
Gene co-expression network reveals shared modules predictive of stage and grade in serous ovarian cancers
Cited by: 43
Author(s): Qian Sun, Hongbo Zhao, Cong Zhang, Ting Hu, Jiankang Wu, Xingguang Lin, Danfeng Luo, Changyu Wang, Meng Li, Xi Liu, Kezhen Li, Junbo Hu, Ding Ma, Tao Zhu
Software Mentions: 1
Published: over 7 years ago
10.14814/phy2.12208
Genetic modulation of diabetic nephropathy among mouse strains with Ins2<i>Akita</i>mutation
Cited by: 7
Author(s): Xinhui Wu, Richard C. Davis, Timothy S. McMillen, Valérie Schaeffer, Zhiqiang Zhou, Hongxiu Qi, Parisa N. Mazandarani, Roshanak Alialy, Kelly L. Hudkins, Aldons J. Lusis, Renée C. LeBoeuf
Software Mentions: 1
Published: about 10 years ago
10.1186/s12284-020-00437-w
Long Non-coding RNAs Responsive to Blast Fungus Infection in Rice
Cited by: 16
Author(s): Lanlan Wang, Jingjing Jin, Lihua Li, Shaohong Qu
Software Mentions: 1
Published: about 4 years ago
10.1186/s12284-020-00439-8
Weighted Gene Co-Expression Network Coupled with a Critical-Time-Point Analysis during Pathogenesis for Predicting the Molecular Mechanism Underlying Blast Resistance in Rice
Cited by: 2
Author(s): Dagang Tian, Zaijie Chen, Yan Lin, Ziqiang Chen, Zonghua Wang, Wang Feng
Software Mentions: 1
Published: almost 4 years ago
10.1111/acel.12788
Synergistic effects of TGFβ2, WNT9a, and FGFR4 signals attenuate satellite cell differentiation during skeletal muscle development
Cited by: 19
Author(s): Weiya Zhang, Yongming Xu, Lu Zhang, Sheng Wang, Binxu Yin, Zhao Song, Xinyun Li
Software Mentions: 1
Published: over 6 years ago
10.1002/cam4.3369
Microarray profiling of differentially expressed lncRNAs and mRNAs in lung adenocarcinomas and bioinformatics analysis
Cited by: 12
Author(s): Fei He, Liping Huang, Qiuping Xu, Weimin Xiong, Shuang Liu, Huimin Yang, Wenzhou Lu, Rendong Xiao, Zhijian Hu, Lin Cai
Software Mentions: 1
Published: about 4 years ago
10.1038/s41398-018-0325-1
Dopamine perturbation of gene co-expression networks reveals differential response in schizophrenia for translational machinery
Cited by: 7
Author(s): Mark Z. Kos, Jubao Duan, Alan R. Sanders, Lucy Blondell, Eugene Drigalenko, Melanie A. Carless, Pablo V. Gejman, Harald H.H. Göring, Mgs
Software Mentions: 1
Published: almost 6 years ago
10.1002/ctm2.330
Forty‐three key gene expressions involved in the effect of indoleamine 2,3‐dioxygenase 1 expression on cancer prognosis may be a potential indoleamine 2,3‐dioxygenase 1 inhibitor biomarker
Cited by: 0
Author(s): Weirui Li, Leilei Guo, Zikang Xing, Xin Fang, Heng Liang, Shengnan Zhang, Lei Shi, Chunxiang Kuang, Leming Shi, Yuanting Zheng, Yue‐Qing Hu, Qing Yang
Software Mentions: 1
Published: almost 4 years ago
10.1038/tp.2016.245
Peripheral blood gene expression profiles linked to monoamine metabolite levels in cerebrospinal fluid
Cited by: 13
Author(s): Jurjen J. Luykx, Loes Olde Loohuis, M Neeleman, Eric Strengman, Steven C. Bakker, Eef G.W.M. Lentjes, Paul Borgdorff, Eric P.A. van Dongen, Peter Bruins, René S. Kahn, Steve Horvath, Simone de Jong, Roel A. Ophoff
Software Mentions: 1
Published: almost 8 years ago
10.3390/biom8030070
Functional Annotation of Caenorhabditis elegans Genes by Analysis of Gene Co-Expression Networks
Cited by: 4
Author(s): Wei Liu, Ling Li, Yiruo He, Sen Cai, Wenjie Zhao, Hao Zheng, Yuexian Zhong, Shaobo Wang, Yang Zou, Zhenhua Xu, Yu Zhang, Wei Tu
Software Mentions: 1
Published: over 6 years ago
10.18632/aging.102816
Cancer stem cell-specific expression profiles reveal emerging bladder cancer biomarkers and identify circRNA_103809 as an important regulator in bladder cancer
Cited by: 19
Author(s): Tao Tao, Simin Yuan, Jinjian Liu, Da Shi, Mian Peng, Chong Li, Song Wu
Software Mentions: 1
Published: almost 5 years ago
10.18632/aging.103054
A novel immune-related genes prognosis biomarker for melanoma: associated with tumor microenvironment
Cited by: 73
Author(s): Rongzhi Huang, Min Mao, Yong Lu, Qingliang Yu, Liang Liao
Software Mentions: 1
Published: over 4 years ago
10.1038/s41597-021-00828-8
Nelumbo genome database, an integrative resource for gene expression and variants of Nelumbo nucifera
Cited by: 22
Author(s): Hui Li, Xingyu Yang, Yue Zhang, Zhiyan Gao, Yuting Liang, Jin‐Ming Chen, Tao Shi
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.4107
Constructing a comprehensive gene co-expression based interactome in <i>Bos taurus</i>
Cited by: 9
Author(s): Yan Chen, Yining Liu, Min Du, Wengang Zhang, Lei Xu, Xue Gao, Lupei Zhang, Huijiang Gao, Lingyang Xu, Junya Li, Min Zhao
Software Mentions: 1
Published: almost 7 years ago
10.3390/biom10040549
Biochemical and Comparative Transcriptome Analyses Reveal Key Genes Involved in Major Metabolic Regulation Related to Colored Leaf Formation in Osmanthus fragrans ‘Yinbi Shuanghui’ during Development
Cited by: 13
Author(s): Xuan Chen, Xia Yang, Jun Xie, Wenjie Ding, Yuli Li, Yuanzheng Yue
Software Mentions: 1
Published: over 4 years ago
10.1038/srep12298
Network analysis of immunotherapy-induced regressing tumours identifies novel synergistic drug combinations
Cited by: 55
Author(s): W. Joost Lesterhuis, Catherine Rinaldi, Anya C. Jones, Esdy N. Rozali, Ian M. Dick, Andrea Khong, Louis Boon, Bruce Robinson, Anna K. Nowak, Anthony Bosco, Richard Lake
Software Mentions: 1
Published: over 9 years ago
10.1186/s40478-015-0203-5
Induction of a common microglia gene expression signature by aging and neurodegenerative conditions: a co-expression meta-analysis
Cited by: 436
Author(s): Inge R. Holtman, Divya Raj, Jeremy A. Miller, W. Schaafsma, Zhuoran Yin, Nieske Brouwer, Paul D. Wes, Thomas Møller, Marie Orre, Willem Kamphuis, Elly M. Hol, Erik Boddeke, Bart J. L. Eggen
Software Mentions: 1
Published: over 9 years ago
10.1038/srep13248
Derivation of a fifteen gene prognostic panel for six cancers
Cited by: 22
Author(s): Mamata F. Khirade, Girdhari Lal, Sharmila A. Bapat
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pgen.1007879
An interaction-based model for neuropsychiatric features of copy-number variants
Cited by: 38
Author(s): Matthew Jensen, Santhosh Girirajan
Software Mentions: 1
Published: almost 6 years ago
10.1002/ctm2.343
Clinical significance and immune landscapes of stemness‐related and immune gene set‐based signature in oral cancer
Cited by: 12
Author(s): Xian Lin, Xiong-Zhou Zheng, Baichun Yang, Jian Chen, Qin Xu, Qingwen Wang
Software Mentions: 1
Published: almost 4 years ago
10.1038/srep17494
Honey bee microRNAs respond to infection by the microsporidian parasite Nosema ceranae
Cited by: 15
Author(s): Qiang Huang, Yanping Chen, Rui Wu Wang, Ryan S. Schwarz, Jay D. Evans
Software Mentions: 1
Published: almost 9 years ago
10.1038/srep18045
Proteome Analysis of Renoprotection Mediated by a Novel Cyclic Helix B Peptide in Acute Kidney Injury
Cited by: 18
Author(s): Cheng Yang, Junjun Liu, Li Long, Man Hu, Ya‐Qiu Long, Xiaohui Liu, Tongyu Zhu, Xiao Huang, Shouliang Zhao, Shangfeng Liu, Ruiming Rong
Software Mentions: 1
Published: almost 9 years ago
10.1038/srep19430
DNA co-methylation modules in postmortem prefrontal cortex tissues of European Australians with alcohol use disorders
Cited by: 66
Author(s): Fan Wang, Hao Xu, Hongyu Zhao, Joel Gelernter, Huiping Zhang
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13601-020-00332-z
Distinct type 2-high inflammation associated molecular signatures of chronic rhinosinusitis with nasal polyps with comorbid asthma
Cited by: 34
Author(s): Ming Wang, Xiangting Bu, Ge Luan, Lishan Lin, Yan Wang, Jianmin Jin, Luo Zhang, Chengshuo Wang
Software Mentions: 1
Published: over 4 years ago
10.1007/s11306-019-1511-8
Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [CO2] and temperature
Cited by: 21
Author(s): Jessica M. Wedow, Craig R. Yendrek, Tathyana Rachel Palo Mello, Silvana Creste, Carlos A. Martínez, Elizabeth A. Ainsworth
Software Mentions: 1
Published: over 5 years ago
10.1007/s11306-017-1263-2
Estimation of metabolite networks with regard to a specific covariable: applications to plant and human data
Cited by: 9
Author(s): Georgios Bartzis, Joris Deelen, Júlio Maia, Wilco Ligterink, Henk W. M. Hilhorst, Jeanine J. Houwing-Duistermaat, Fred van Eeuwijk, Hae‐Won Uh
Software Mentions: 1
Published: about 7 years ago
10.7717/peerj.9773
Significance of hub genes and immune cell infiltration identified by bioinformatics analysis in pelvic organ prolapse
Cited by: 8
Author(s): Ying Zhao, Zhijun Xia, Te Yu Lin, Yitong Yin
Software Mentions: 1
Published: over 4 years ago
10.1038/srep25261
Elucidation of molecular and functional heterogeneity through differential expression network analyses of discrete tumor subsets
Cited by: 6
Author(s): Rutika R. Naik, Nilesh Gardi, Sharmila A. Bapat
Software Mentions: 1
Published: over 8 years ago